0s autopkgtest [08:14:15]: starting date and time: 2024-11-13 08:14:15+0000 0s autopkgtest [08:14:15]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [08:14:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e1kk4hyr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade custodian --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-2.secgroup --name adt-plucky-amd64-custodian-20241113-081415-juju-7f2275-prod-proposed-migration-environment-15-1b851917-3946-450e-96ad-00ba8efeb3ca --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 50s autopkgtest [08:15:05]: testbed dpkg architecture: amd64 51s autopkgtest [08:15:06]: testbed apt version: 2.9.8 51s autopkgtest [08:15:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 51s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 52s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 52s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [848 kB] 52s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 52s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 52s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 52s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 52s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 52s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 52s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 52s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 52s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 52s Fetched 2171 kB in 1s (2337 kB/s) 52s Reading package lists... 54s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s Calculating upgrade... 55s The following NEW packages will be installed: 55s python3.13-gdbm 55s The following packages will be upgraded: 55s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 55s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 253 kB of archives. 55s After this operation, 147 kB of additional disk space will be used. 55s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 55s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 55s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 55s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 55s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 55s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 56s Fetched 253 kB in 0s (620 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 56s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 56s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Setting up python3-minimal (3.12.7-1) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 56s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 56s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 56s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 56s Selecting previously unselected package python3.13-gdbm. 56s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 56s Unpacking python3.13-gdbm (3.13.0-2) ... 56s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 56s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 56s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 56s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 56s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 56s Setting up python3.13-gdbm (3.13.0-2) ... 56s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 56s Setting up python3 (3.12.7-1) ... 56s Setting up python3-gdbm:amd64 (3.12.7-1) ... 56s Processing triggers for man-db (2.12.1-3) ... 57s Processing triggers for libc-bin (2.40-1ubuntu3) ... 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 58s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 58s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 58s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 58s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 59s Reading package lists... 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Reading package lists... 59s Building dependency tree... 59s Reading state information... 60s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [08:15:17]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 62s autopkgtest [08:15:17]: @@@@@@@@@@@@@@@@@@@@ apt-source custodian 69s Get:1 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (dsc) [2322 B] 69s Get:2 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (tar) [46.6 MB] 69s Get:3 http://ftpmaster.internal/ubuntu plucky/universe custodian 2024.6.24-1 (diff) [8232 B] 69s gpgv: Signature made Mon Aug 5 23:32:47 2024 UTC 69s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 69s gpgv: Can't check signature: No public key 69s dpkg-source: warning: cannot verify inline signature for ./custodian_2024.6.24-1.dsc: no acceptable signature found 71s autopkgtest [08:15:26]: testing package custodian version 2024.6.24-1 71s autopkgtest [08:15:26]: build not needed 81s autopkgtest [08:15:36]: test test-custodian: preparing testbed 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Starting pkgProblemResolver with broken count: 0 83s Starting 2 pkgProblemResolver with broken count: 0 83s Done 83s The following additional packages will be installed: 83s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 83s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 83s libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 83s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 83s libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0 83s libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 83s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 83s python3-all python3-annotated-types python3-appdirs python3-brotli 83s python3-bson python3-contourpy python3-custodian python3-cycler 83s python3-dateutil python3-decorator python3-dnspython python3-email-validator 83s python3-fastjsonschema python3-fonttools python3-fs python3-iniconfig 83s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 83s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpmath 83s python3-nbformat python3-networkx python3-numpy python3-packaging 83s python3-palettable python3-pandas python3-pandas-lib python3-pil 83s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 83s python3-psutil python3-pybtex python3-pydantic python3-pydantic-core 83s python3-pymatgen python3-pytest python3-ruamel.yaml python3-ruamel.yaml.clib 83s python3-scipy python3-six python3-spglib python3-sympy python3-tabulate 83s python3-tenacity python3-tk python3-tqdm python3-traitlets python3-tz 83s python3-ufolib2 python3-uncertainties python3-unicodedata2 python3.12-tk 83s python3.13 python3.13-minimal python3.13-tk tk8.6-blt2.5 unicode-data 83s x11-common 83s Suggested packages: 83s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 83s python-custodian-doc python-cycler-doc python3-trio python3-aioquic 83s python3-h2 python3-httpx python3-httpcore python-fastjsonschema-doc 83s python-joblib-doc python3-pip python-latexcodec-doc python-lxml-doc 83s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 83s inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi 83s python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado 83s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 83s python3-gdal python3-pydot python3-pygraphviz gcc gfortran python-numpy-doc 83s python3-dev python-pandas-doc python3-statsmodels python-pil-doc 83s python3-ipykernel python-pybtex-doc python-pymatgen-doc python3-mp-api 83s python-scipy-doc texlive-fonts-extra python-sympy-doc python-tenacity-doc 83s tix python3-tk-dbg python-traitlets-doc python-uncertainties-doc 83s python3.13-venv python3.13-doc binfmt-support 83s Recommended packages: 83s javascript-common python3-bson-ext python3-simplejson python3-bs4 83s python3-cssselect python3-html5lib python-monty-doc python3-torch 83s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 83s python3-tables python3-numba python3-olefile python3-openbabel python3-ase 83s g++ | c++-compiler isympy-common 84s The following NEW packages will be installed: 84s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 84s fonts-lyx libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 84s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 84s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 84s libopenjp2-7 libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 84s libraqm0 libsharpyuv0 libsymspg2 libtcl8.6 libtiff6 libtk8.6 libwebp7 84s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 84s python-matplotlib-data python3-all python3-annotated-types python3-appdirs 84s python3-brotli python3-bson python3-contourpy python3-custodian 84s python3-cycler python3-dateutil python3-decorator python3-dnspython 84s python3-email-validator python3-fastjsonschema python3-fonttools python3-fs 84s python3-iniconfig python3-joblib python3-jupyter-core python3-kiwisolver 84s python3-latexcodec python3-lxml python3-lz4 python3-matplotlib python3-monty 84s python3-mpmath python3-nbformat python3-networkx python3-numpy 84s python3-packaging python3-palettable python3-pandas python3-pandas-lib 84s python3-pil python3-pil.imagetk python3-platformdirs python3-plotly 84s python3-pluggy python3-psutil python3-pybtex python3-pydantic 84s python3-pydantic-core python3-pymatgen python3-pytest python3-ruamel.yaml 84s python3-ruamel.yaml.clib python3-scipy python3-six python3-spglib 84s python3-sympy python3-tabulate python3-tenacity python3-tk python3-tqdm 84s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 84s python3-unicodedata2 python3.12-tk python3.13 python3.13-minimal 84s python3.13-tk tk8.6-blt2.5 unicode-data x11-common 84s 0 upgraded, 106 newly installed, 0 to remove and 0 not upgraded. 84s Need to get 94.5 MB/94.5 MB of archives. 84s After this operation, 476 MB of additional disk space will be used. 84s Get:1 /tmp/autopkgtest.7nNyNm/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [728 B] 84s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 84s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 84s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1085 kB] 84s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 84s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 84s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-1.1ubuntu2 [37.3 kB] 84s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-1.1ubuntu2 [139 kB] 84s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 84s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 84s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 84s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 84s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.15-1 [862 kB] 84s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 85s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 85s Get:16 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.2.1-1 [171 kB] 85s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 85s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 85s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 85s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 85s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 85s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.0.1-1 [540 kB] 85s Get:23 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 85s Get:24 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu2 [150 kB] 85s Get:25 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 85s Get:26 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 85s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 85s Get:28 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 85s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 85s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 85s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu2 [179 kB] 85s Get:32 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 85s Get:33 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 85s Get:34 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB] 85s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [17.5 kB] 85s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsymspg2 amd64 2.4.0-1ubuntu1 [209 kB] 85s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 85s Get:38 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.4.0-0.1 [231 kB] 85s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 85s Get:40 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB] 85s Get:41 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB] 85s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu1 [169 kB] 85s Get:43 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3 [2928 kB] 85s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 85s Get:45 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 85s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 85s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 85s Get:48 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB] 85s Get:49 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-bson all 4.7.3-2ubuntu1 [41.1 kB] 85s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 85s Get:51 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.0-2 [217 kB] 85s Get:52 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.16.0-7 [13.1 kB] 85s Get:53 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 85s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2024.1-2 [31.4 kB] 85s Get:55 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-5 [5087 kB] 85s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-5 [3112 kB] 86s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic-core amd64 2.23.4-2 [1591 kB] 86s Get:58 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dnspython all 2.6.1-1ubuntu1 [163 kB] 86s Get:59 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 86s Get:60 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pydantic amd64 2.9.1-1 [290 kB] 86s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tqdm all 4.67.0-1 [91.6 kB] 86s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-monty all 2024.7.29-1 [38.0 kB] 86s Get:63 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 86s Get:64 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2 [138 kB] 86s Get:65 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 86s Get:66 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-custodian all 2024.6.24-1 [90.2 kB] 86s Get:67 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 86s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 86s Get:69 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fastjsonschema all 2.20.0-1 [20.1 kB] 86s Get:70 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.13.1-5 [18.2 MB] 86s Get:71 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.16.1+dfsg1-1 [33.4 kB] 86s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 86s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 86s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-4 [91.3 kB] 86s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.0-1 [1282 kB] 86s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB] 86s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB] 86s Get:78 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 86s Get:79 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB] 86s Get:80 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 86s Get:81 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-joblib all 1.3.2-5 [206 kB] 86s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 86s Get:83 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 87s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-jupyter-core all 5.7.2-4 [28.0 kB] 87s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-2 [55.1 kB] 87s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 87s Get:87 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu1 [184 kB] 87s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 10.4.0-1ubuntu1 [463 kB] 87s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.7-3 [116 kB] 87s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.0-2 [106 kB] 87s Get:91 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-tk amd64 3.12.7-1 [9752 B] 87s Get:92 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 10.4.0-1ubuntu1 [9394 B] 87s Get:93 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 87s Get:94 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3 [4545 kB] 87s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 87s Get:96 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 87s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 87s Get:98 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tenacity all 8.5.0-0ubuntu1 [17.0 kB] 87s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 87s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 87s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 87s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-spglib amd64 2.4.0-1ubuntu1 [29.6 kB] 87s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 87s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB] 87s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pymatgen amd64 2024.6.10+dfsg1-8 [2506 kB] 88s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 89s Fetched 94.5 MB in 5s (20.4 MB/s) 89s Selecting previously unselected package libpython3.13-minimal:amd64. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 89s Preparing to unpack .../000-libpython3.13-minimal_3.13.0-2_amd64.deb ... 89s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 89s Selecting previously unselected package python3.13-minimal. 89s Preparing to unpack .../001-python3.13-minimal_3.13.0-2_amd64.deb ... 89s Unpacking python3.13-minimal (3.13.0-2) ... 89s Selecting previously unselected package libtcl8.6:amd64. 89s Preparing to unpack .../002-libtcl8.6_8.6.15+dfsg-2_amd64.deb ... 89s Unpacking libtcl8.6:amd64 (8.6.15+dfsg-2) ... 89s Selecting previously unselected package fonts-dejavu-mono. 89s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-mono (2.37-8) ... 89s Selecting previously unselected package fonts-dejavu-core. 89s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 89s Unpacking fonts-dejavu-core (2.37-8) ... 89s Selecting previously unselected package fontconfig-config. 89s Preparing to unpack .../005-fontconfig-config_2.15.0-1.1ubuntu2_amd64.deb ... 89s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 89s Selecting previously unselected package libfontconfig1:amd64. 89s Preparing to unpack .../006-libfontconfig1_2.15.0-1.1ubuntu2_amd64.deb ... 89s Unpacking libfontconfig1:amd64 (2.15.0-1.1ubuntu2) ... 89s Selecting previously unselected package libxrender1:amd64. 89s Preparing to unpack .../007-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 89s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 89s Selecting previously unselected package libxft2:amd64. 89s Preparing to unpack .../008-libxft2_2.3.6-1build1_amd64.deb ... 89s Unpacking libxft2:amd64 (2.3.6-1build1) ... 89s Selecting previously unselected package x11-common. 89s Preparing to unpack .../009-x11-common_1%3a7.7+23ubuntu3_all.deb ... 89s Unpacking x11-common (1:7.7+23ubuntu3) ... 89s Selecting previously unselected package libxss1:amd64. 89s Preparing to unpack .../010-libxss1_1%3a1.2.3-1build3_amd64.deb ... 89s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 89s Selecting previously unselected package libtk8.6:amd64. 89s Preparing to unpack .../011-libtk8.6_8.6.15-1_amd64.deb ... 89s Unpacking libtk8.6:amd64 (8.6.15-1) ... 89s Selecting previously unselected package tk8.6-blt2.5. 89s Preparing to unpack .../012-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 89s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 89s Selecting previously unselected package blt. 89s Preparing to unpack .../013-blt_2.5.3+dfsg-7build1_amd64.deb ... 89s Unpacking blt (2.5.3+dfsg-7build1) ... 89s Selecting previously unselected package fonts-lyx. 89s Preparing to unpack .../014-fonts-lyx_2.4.2.1-1_all.deb ... 89s Unpacking fonts-lyx (2.4.2.1-1) ... 89s Selecting previously unselected package libblas3:amd64. 89s Preparing to unpack .../015-libblas3_3.12.0-3build2_amd64.deb ... 89s Unpacking libblas3:amd64 (3.12.0-3build2) ... 89s Selecting previously unselected package libdeflate0:amd64. 89s Preparing to unpack .../016-libdeflate0_1.22-1_amd64.deb ... 89s Unpacking libdeflate0:amd64 (1.22-1) ... 89s Selecting previously unselected package libgfortran5:amd64. 89s Preparing to unpack .../017-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 89s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 89s Selecting previously unselected package libgomp1:amd64. 89s Preparing to unpack .../018-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 89s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 89s Selecting previously unselected package libgraphite2-3:amd64. 89s Preparing to unpack .../019-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 89s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 89s Selecting previously unselected package libharfbuzz0b:amd64. 89s Preparing to unpack .../020-libharfbuzz0b_10.0.1-1_amd64.deb ... 89s Unpacking libharfbuzz0b:amd64 (10.0.1-1) ... 89s Selecting previously unselected package libimagequant0:amd64. 89s Preparing to unpack .../021-libimagequant0_2.18.0-1build1_amd64.deb ... 89s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 89s Selecting previously unselected package libjpeg-turbo8:amd64. 89s Preparing to unpack .../022-libjpeg-turbo8_2.1.5-2ubuntu2_amd64.deb ... 89s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu2) ... 89s Selecting previously unselected package libjpeg8:amd64. 89s Preparing to unpack .../023-libjpeg8_8c-2ubuntu11_amd64.deb ... 89s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 89s Selecting previously unselected package libjs-jquery. 89s Preparing to unpack .../024-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 89s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 89s Selecting previously unselected package libjs-jquery-ui. 89s Preparing to unpack .../025-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 89s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 90s Selecting previously unselected package liblapack3:amd64. 90s Preparing to unpack .../026-liblapack3_3.12.0-3build2_amd64.deb ... 90s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 90s Selecting previously unselected package liblbfgsb0:amd64. 90s Preparing to unpack .../027-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 90s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 90s Selecting previously unselected package liblcms2-2:amd64. 90s Preparing to unpack .../028-liblcms2-2_2.16-2_amd64.deb ... 90s Unpacking liblcms2-2:amd64 (2.16-2) ... 90s Selecting previously unselected package liblerc4:amd64. 90s Preparing to unpack .../029-liblerc4_4.0.0+ds-4ubuntu2_amd64.deb ... 90s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu2) ... 90s Selecting previously unselected package libpython3.13-stdlib:amd64. 90s Preparing to unpack .../030-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 90s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 90s Selecting previously unselected package libqhull-r8.0:amd64. 90s Preparing to unpack .../031-libqhull-r8.0_2020.2-6build1_amd64.deb ... 90s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 90s Selecting previously unselected package libraqm0:amd64. 90s Preparing to unpack .../032-libraqm0_0.10.1-1build1_amd64.deb ... 90s Unpacking libraqm0:amd64 (0.10.1-1build1) ... 90s Selecting previously unselected package libsharpyuv0:amd64. 90s Preparing to unpack .../033-libsharpyuv0_1.4.0-0.1_amd64.deb ... 90s Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... 90s Selecting previously unselected package libsymspg2:amd64. 90s Preparing to unpack .../034-libsymspg2_2.4.0-1ubuntu1_amd64.deb ... 90s Unpacking libsymspg2:amd64 (2.4.0-1ubuntu1) ... 90s Selecting previously unselected package libjbig0:amd64. 90s Preparing to unpack .../035-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 90s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 90s Selecting previously unselected package libwebp7:amd64. 90s Preparing to unpack .../036-libwebp7_1.4.0-0.1_amd64.deb ... 90s Unpacking libwebp7:amd64 (1.4.0-0.1) ... 90s Selecting previously unselected package libtiff6:amd64. 90s Preparing to unpack .../037-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 90s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 90s Selecting previously unselected package libwebpdemux2:amd64. 90s Preparing to unpack .../038-libwebpdemux2_1.4.0-0.1_amd64.deb ... 90s Unpacking libwebpdemux2:amd64 (1.4.0-0.1) ... 90s Selecting previously unselected package libwebpmux3:amd64. 90s Preparing to unpack .../039-libwebpmux3_1.4.0-0.1_amd64.deb ... 90s Unpacking libwebpmux3:amd64 (1.4.0-0.1) ... 90s Selecting previously unselected package libxslt1.1:amd64. 90s Preparing to unpack .../040-libxslt1.1_1.1.39-0exp1ubuntu1_amd64.deb ... 90s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu1) ... 90s Selecting previously unselected package python-matplotlib-data. 90s Preparing to unpack .../041-python-matplotlib-data_3.8.3-3_all.deb ... 90s Unpacking python-matplotlib-data (3.8.3-3) ... 90s Selecting previously unselected package python3.13. 90s Preparing to unpack .../042-python3.13_3.13.0-2_amd64.deb ... 90s Unpacking python3.13 (3.13.0-2) ... 90s Selecting previously unselected package python3-all. 90s Preparing to unpack .../043-python3-all_3.12.7-1_amd64.deb ... 90s Unpacking python3-all (3.12.7-1) ... 90s Selecting previously unselected package python3-annotated-types. 90s Preparing to unpack .../044-python3-annotated-types_0.7.0-1_all.deb ... 90s Unpacking python3-annotated-types (0.7.0-1) ... 90s Selecting previously unselected package python3-appdirs. 90s Preparing to unpack .../045-python3-appdirs_1.4.4-4_all.deb ... 90s Unpacking python3-appdirs (1.4.4-4) ... 90s Selecting previously unselected package python3-brotli. 90s Preparing to unpack .../046-python3-brotli_1.1.0-2build2_amd64.deb ... 90s Unpacking python3-brotli (1.1.0-2build2) ... 90s Selecting previously unselected package python3-bson. 90s Preparing to unpack .../047-python3-bson_4.7.3-2ubuntu1_all.deb ... 90s Unpacking python3-bson (4.7.3-2ubuntu1) ... 90s Selecting previously unselected package python3-numpy. 90s Preparing to unpack .../048-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 90s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 90s Selecting previously unselected package python3-contourpy. 90s Preparing to unpack .../049-python3-contourpy_1.3.0-2_amd64.deb ... 90s Unpacking python3-contourpy (1.3.0-2) ... 90s Selecting previously unselected package python3-six. 90s Preparing to unpack .../050-python3-six_1.16.0-7_all.deb ... 90s Unpacking python3-six (1.16.0-7) ... 90s Selecting previously unselected package python3-dateutil. 90s Preparing to unpack .../051-python3-dateutil_2.9.0-2_all.deb ... 90s Unpacking python3-dateutil (2.9.0-2) ... 90s Selecting previously unselected package python3-tz. 90s Preparing to unpack .../052-python3-tz_2024.1-2_all.deb ... 90s Unpacking python3-tz (2024.1-2) ... 90s Selecting previously unselected package python3-pandas-lib:amd64. 91s Preparing to unpack .../053-python3-pandas-lib_2.2.3+dfsg-5_amd64.deb ... 91s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 91s Selecting previously unselected package python3-pandas. 91s Preparing to unpack .../054-python3-pandas_2.2.3+dfsg-5_all.deb ... 91s Unpacking python3-pandas (2.2.3+dfsg-5) ... 91s Selecting previously unselected package python3-pydantic-core. 91s Preparing to unpack .../055-python3-pydantic-core_2.23.4-2_amd64.deb ... 91s Unpacking python3-pydantic-core (2.23.4-2) ... 91s Selecting previously unselected package python3-dnspython. 91s Preparing to unpack .../056-python3-dnspython_2.6.1-1ubuntu1_all.deb ... 91s Unpacking python3-dnspython (2.6.1-1ubuntu1) ... 91s Selecting previously unselected package python3-email-validator. 91s Preparing to unpack .../057-python3-email-validator_2.2.0-1_all.deb ... 91s Unpacking python3-email-validator (2.2.0-1) ... 91s Selecting previously unselected package python3-pydantic. 91s Preparing to unpack .../058-python3-pydantic_2.9.1-1_amd64.deb ... 91s Unpacking python3-pydantic (2.9.1-1) ... 91s Selecting previously unselected package python3-tqdm. 91s Preparing to unpack .../059-python3-tqdm_4.67.0-1_all.deb ... 91s Unpacking python3-tqdm (4.67.0-1) ... 91s Selecting previously unselected package python3-monty. 91s Preparing to unpack .../060-python3-monty_2024.7.29-1_all.deb ... 91s Unpacking python3-monty (2024.7.29-1) ... 91s Selecting previously unselected package python3-psutil. 91s Preparing to unpack .../061-python3-psutil_5.9.8-2build2_amd64.deb ... 91s Unpacking python3-psutil (5.9.8-2build2) ... 91s Selecting previously unselected package python3-ruamel.yaml.clib:amd64. 91s Preparing to unpack .../062-python3-ruamel.yaml.clib_0.2.8+ds-2_amd64.deb ... 91s Unpacking python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2) ... 91s Selecting previously unselected package python3-ruamel.yaml. 91s Preparing to unpack .../063-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 91s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 91s Selecting previously unselected package python3-custodian. 91s Preparing to unpack .../064-python3-custodian_2024.6.24-1_all.deb ... 91s Unpacking python3-custodian (2024.6.24-1) ... 91s Selecting previously unselected package python3-cycler. 91s Preparing to unpack .../065-python3-cycler_0.12.1-1_all.deb ... 91s Unpacking python3-cycler (0.12.1-1) ... 91s Selecting previously unselected package python3-decorator. 91s Preparing to unpack .../066-python3-decorator_5.1.1-5_all.deb ... 91s Unpacking python3-decorator (5.1.1-5) ... 91s Selecting previously unselected package python3-fastjsonschema. 91s Preparing to unpack .../067-python3-fastjsonschema_2.20.0-1_all.deb ... 91s Unpacking python3-fastjsonschema (2.20.0-1) ... 91s Selecting previously unselected package python3-scipy. 91s Preparing to unpack .../068-python3-scipy_1.13.1-5_amd64.deb ... 91s Unpacking python3-scipy (1.13.1-5) ... 92s Selecting previously unselected package python3-ufolib2. 92s Preparing to unpack .../069-python3-ufolib2_0.16.1+dfsg1-1_all.deb ... 92s Unpacking python3-ufolib2 (0.16.1+dfsg1-1) ... 92s Selecting previously unselected package python3-mpmath. 92s Preparing to unpack .../070-python3-mpmath_1.3.0-1_all.deb ... 92s Unpacking python3-mpmath (1.3.0-1) ... 92s Selecting previously unselected package python3-sympy. 92s Preparing to unpack .../071-python3-sympy_1.13.3-1_all.deb ... 92s Unpacking python3-sympy (1.13.3-1) ... 92s Selecting previously unselected package python3-fs. 92s Preparing to unpack .../072-python3-fs_2.4.16-4_all.deb ... 92s Unpacking python3-fs (2.4.16-4) ... 92s Selecting previously unselected package python3-lxml:amd64. 92s Preparing to unpack .../073-python3-lxml_5.3.0-1_amd64.deb ... 92s Unpacking python3-lxml:amd64 (5.3.0-1) ... 92s Selecting previously unselected package python3-lz4. 92s Preparing to unpack .../074-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ... 92s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 92s Selecting previously unselected package python3-unicodedata2. 92s Preparing to unpack .../075-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ... 92s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 92s Selecting previously unselected package unicode-data. 92s Preparing to unpack .../076-unicode-data_15.1.0-1_all.deb ... 92s Unpacking unicode-data (15.1.0-1) ... 92s Selecting previously unselected package python3-fonttools. 92s Preparing to unpack .../077-python3-fonttools_4.46.0-1build2_amd64.deb ... 92s Unpacking python3-fonttools (4.46.0-1build2) ... 92s Selecting previously unselected package python3-iniconfig. 92s Preparing to unpack .../078-python3-iniconfig_1.1.1-2_all.deb ... 92s Unpacking python3-iniconfig (1.1.1-2) ... 92s Selecting previously unselected package python3-joblib. 92s Preparing to unpack .../079-python3-joblib_1.3.2-5_all.deb ... 92s Unpacking python3-joblib (1.3.2-5) ... 92s Selecting previously unselected package python3-platformdirs. 92s Preparing to unpack .../080-python3-platformdirs_4.3.6-1_all.deb ... 92s Unpacking python3-platformdirs (4.3.6-1) ... 92s Selecting previously unselected package python3-traitlets. 92s Preparing to unpack .../081-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 92s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 92s Selecting previously unselected package python3-jupyter-core. 92s Preparing to unpack .../082-python3-jupyter-core_5.7.2-4_all.deb ... 92s Unpacking python3-jupyter-core (5.7.2-4) ... 92s Selecting previously unselected package python3-kiwisolver. 92s Preparing to unpack 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103s Setting up python3.13-minimal (3.13.0-2) ... 104s Setting up libharfbuzz0b:amd64 (10.0.1-1) ... 104s Setting up python3-dateutil (2.9.0-2) ... 104s Setting up python3-email-validator (2.2.0-1) ... 104s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 104s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 104s Setting up python3-mpmath (1.3.0-1) ... 105s Setting up python-matplotlib-data (3.8.3-3) ... 105s Setting up libwebpmux3:amd64 (1.4.0-0.1) ... 105s Setting up python3-appdirs (1.4.4-4) ... 105s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 105s Setting up python3-jupyter-core (5.7.2-4) ... 105s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 105s Setting up python3-sympy (1.13.3-1) ... 115s Setting up liblapack3:amd64 (3.12.0-3build2) ... 115s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 115s Setting up python3.13 (3.13.0-2) ... 115s Setting up 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(1.13.1-5) ... 136s Setting up libtk8.6:amd64 (8.6.15-1) ... 136s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-5) ... 136s Setting up python3.12-tk (3.12.7-3) ... 136s Setting up python3.13-tk (3.13.0-2) ... 136s Setting up python3-pil:amd64 (10.4.0-1ubuntu1) ... 136s Setting up python3-pandas (2.2.3+dfsg-5) ... 143s Setting up python3-monty (2024.7.29-1) ... 144s Setting up python3-custodian (2024.6.24-1) ... 144s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 144s Setting up blt (2.5.3+dfsg-7build1) ... 144s Setting up python3-tk:amd64 (3.12.7-1) ... 144s Setting up python3-pil.imagetk:amd64 (10.4.0-1ubuntu1) ... 144s Setting up python3-fonttools (4.46.0-1build2) ... 145s Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... 146s Setting up python3-matplotlib (3.8.3-3) ... 148s Setting up python3-pymatgen (2024.6.10+dfsg1-8) ... 149s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 149s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 150s /usr/lib/python3/dist-packages/pymatgen/io/lammps/outputs.py:115: SyntaxWarning: invalid escape sequence '\+' 150s pattern = file_pattern.replace("+","\+").replace("*", "([0-9]+)").replace("\\", "\\\\") 150s Setting up autopkgtest-satdep (0) ... 150s Processing triggers for libc-bin (2.40-1ubuntu3) ... 150s Processing triggers for systemd (256.5-2ubuntu4) ... 150s Processing triggers for man-db (2.12.1-3) ... 154s (Reading database ... 103806 files and directories currently installed.) 154s Removing autopkgtest-satdep (0) ... 155s autopkgtest [08:16:50]: test test-custodian: [----------------------- 155s ============================= test session starts ============================== 155s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 155s cachedir: .pytest_cache 155s rootdir: /tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests 155s plugins: typeguard-4.4.1 156s collecting ... collected 18 items / 13 errors / 3 skipped 156s 156s ==================================== ERRORS ==================================== 156s _________________ ERROR collecting tests/cp2k/test_handlers.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/cp2k/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/cp2k/test_handlers.py:11: in 156s from pymatgen.io.cp2k.inputs import Keyword, KeywordList 156s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:41: in 156s from pymatgen.core import Element 156s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:12: in 156s from pymatgen.core.composition import Composition 156s /usr/lib/python3/dist-packages/pymatgen/core/composition.py:22: in 156s from pymatgen.core.periodic_table import DummySpecies, Element, ElementType, Species, get_el_sp 156s /usr/lib/python3/dist-packages/pymatgen/core/periodic_table.py:17: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/cp2k/test_jobs.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/cp2k/test_jobs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/cp2k/test_jobs.py:11: in 156s from custodian.cp2k.jobs import Cp2kJob 156s /usr/lib/python3/dist-packages/custodian/cp2k/jobs.py:10: in 156s from pymatgen.io.cp2k.inputs import Cp2kInput, Keyword 156s /usr/lib/python3/dist-packages/pymatgen/io/cp2k/inputs.py:41: in 156s from pymatgen.core import Element 156s /usr/lib/python3/dist-packages/pymatgen/core/__init__.py:12: in 156s from pymatgen.core.composition import Composition 156s /usr/lib/python3/dist-packages/pymatgen/core/composition.py:22: in 156s from pymatgen.core.periodic_table import DummySpecies, Element, ElementType, Species, get_el_sp 156s /usr/lib/python3/dist-packages/pymatgen/core/periodic_table.py:17: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/feff/test_handlers.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/feff/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/feff/test_handlers.py:6: in 156s from custodian.feff.handlers import UnconvergedErrorHandler 156s /usr/lib/python3/dist-packages/custodian/feff/handlers.py:9: in 156s from pymatgen.io.feff.sets import FEFFDictSet 156s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 156s from .inputs import ( 156s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:15: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/feff/test_jobs.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/feff/test_jobs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/feff/test_jobs.py:5: in 156s from pymatgen.io.feff.inputs import Atoms, Tags 156s /usr/lib/python3/dist-packages/pymatgen/io/feff/__init__.py:9: in 156s from .inputs import ( 156s /usr/lib/python3/dist-packages/pymatgen/io/feff/inputs.py:15: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _______________ ERROR collecting tests/gaussian/test_handlers.py _______________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/gaussian/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/gaussian/test_handlers.py:8: in 156s from custodian.gaussian.handlers import GaussianErrorHandler, WallTimeErrorHandler 156s /usr/lib/python3/dist-packages/custodian/gaussian/handlers.py:14: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/gaussian/test_jobs.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/gaussian/test_jobs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/gaussian/test_jobs.py:7: in 156s from custodian.gaussian.jobs import GaussianJob 156s /usr/lib/python3/dist-packages/custodian/gaussian/jobs.py:12: in 156s from pymatgen.io.gaussian import GaussianInput, GaussianOutput 156s /usr/lib/python3/dist-packages/pymatgen/io/gaussian.py:9: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _______________ ERROR collecting tests/lobster/test_handlers.py ________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/lobster/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/lobster/test_handlers.py:3: in 156s from custodian.lobster.handlers import ChargeSpillingValidator, EnoughBandsValidator, LobsterFilesValidator 156s /usr/lib/python3/dist-packages/custodian/lobster/handlers.py:5: in 156s from pymatgen.io.lobster import Lobsterout 156s /usr/lib/python3/dist-packages/pymatgen/io/lobster/__init__.py:10: in 156s from .inputs import Lobsterin 156s /usr/lib/python3/dist-packages/pymatgen/io/lobster/inputs.py:20: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ________________ ERROR collecting tests/nwchem/test_handlers.py ________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/nwchem/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/nwchem/test_handlers.py:5: in 156s from custodian.nwchem.handlers import NwchemErrorHandler 156s /usr/lib/python3/dist-packages/custodian/nwchem/handlers.py:8: in 156s from pymatgen.io.nwchem import NwInput, NwOutput 156s /usr/lib/python3/dist-packages/pymatgen/io/nwchem.py:29: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s _________________ ERROR collecting tests/vasp/test_handlers.py _________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/vasp/test_handlers.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/vasp/test_handlers.py:10: in 156s from pymatgen.io.vasp.inputs import Incar, Kpoints, Structure, VaspInput 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 156s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ____________________ ERROR collecting tests/vasp/test_io.py ____________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/vasp/test_io.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/vasp/test_io.py:5: in 156s from custodian.vasp.io import load_outcar, load_vasprun 156s /usr/lib/python3/dist-packages/custodian/vasp/io.py:3: in 156s from pymatgen.io.vasp.outputs import Outcar, Vasprun 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 156s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ___________________ ERROR collecting tests/vasp/test_jobs.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/vasp/test_jobs.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/vasp/test_jobs.py:10: in 156s from pymatgen.io.vasp import Incar, Kpoints, Poscar 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 156s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s __________________ ERROR collecting tests/vasp/test_utils.py ___________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/vasp/test_utils.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/vasp/test_utils.py:5: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s ________________ ERROR collecting tests/vasp/test_validators.py ________________ 156s ImportError while importing test module '/tmp/autopkgtest.7nNyNm/autopkgtest_tmp/runtests/tests/vasp/test_validators.py'. 156s Hint: make sure your test modules/packages have valid Python names. 156s Traceback: 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in 156s from . import multiarray 156s /usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in 156s from . import overrides 156s /usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in 156s from numpy.core._multiarray_umath import ( 156s E ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 156s 156s During handling of the above exception, another exception occurred: 156s /usr/lib/python3/dist-packages/numpy/__init__.py:130: in 156s from numpy.__config__ import show as show_config 156s /usr/lib/python3/dist-packages/numpy/__config__.py:4: in 156s from numpy.core._multiarray_umath import ( 156s /usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in 156s raise ImportError(msg) 156s E ImportError: 156s E 156s E IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 156s E 156s E Importing the numpy C-extensions failed. This error can happen for 156s E many reasons, often due to issues with your setup or how NumPy was 156s E installed. 156s E 156s E We have compiled some common reasons and troubleshooting tips at: 156s E 156s E https://numpy.org/devdocs/user/troubleshooting-importerror.html 156s E 156s E Please note and check the following: 156s E 156s E * The Python version is: Python3.13 from "/usr/bin/python3.13" 156s E * The NumPy version is: "1.26.4" 156s E 156s E and make sure that they are the versions you expect. 156s E Please carefully study the documentation linked above for further help. 156s E 156s E Original error was: No module named 'numpy.core._multiarray_umath' 156s 156s The above exception was the direct cause of the following exception: 156s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 156s return _bootstrap._gcd_import(name[level:], package, level) 156s tests/vasp/test_validators.py:6: in 156s from custodian.vasp.validators import VaspAECCARValidator, VaspFilesValidator, VaspNpTMDValidator, VasprunXMLValidator 156s /usr/lib/python3/dist-packages/custodian/vasp/validators.py:9: in 156s from pymatgen.io.vasp import Chgcar, Incar 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/__init__.py:10: in 156s from .inputs import Incar, Kpoints, Poscar, Potcar, PotcarSingle, VaspInput 156s /usr/lib/python3/dist-packages/pymatgen/io/vasp/inputs.py:27: in 156s import numpy as np 156s /usr/lib/python3/dist-packages/numpy/__init__.py:135: in 156s raise ImportError(msg) from e 156s E ImportError: Error importing numpy: you should not try to import numpy from 156s E its source directory; please exit the numpy source tree, and relaunch 156s E your python interpreter from there. 156s =========================== short test summary info ============================ 156s ERROR tests/cp2k/test_handlers.py 156s ERROR tests/cp2k/test_jobs.py 156s ERROR tests/feff/test_handlers.py 156s ERROR tests/feff/test_jobs.py 156s ERROR tests/gaussian/test_handlers.py 156s ERROR tests/gaussian/test_jobs.py 156s ERROR tests/lobster/test_handlers.py 156s ERROR tests/nwchem/test_handlers.py 156s ERROR tests/vasp/test_handlers.py 156s ERROR tests/vasp/test_io.py 156s ERROR tests/vasp/test_jobs.py 156s ERROR tests/vasp/test_utils.py 156s ERROR tests/vasp/test_validators.py 156s !!!!!!!!!!!!!!!!!!! Interrupted: 13 errors during collection !!!!!!!!!!!!!!!!!!! 156s ======================== 3 skipped, 13 errors in 1.11s ========================= 157s autopkgtest [08:16:52]: test test-custodian: -----------------------] 157s autopkgtest [08:16:52]: test test-custodian: - - - - - - - - - - results - - - - - - - - - - 157s test-custodian FAIL non-zero exit status 2 158s autopkgtest [08:16:53]: @@@@@@@@@@@@@@@@@@@@ summary 158s test-custodian FAIL non-zero exit status 2 169s nova [W] Skipping flock for amd64 169s Creating nova instance adt-plucky-amd64-custodian-20241113-081415-juju-7f2275-prod-proposed-migration-environment-15-1b851917-3946-450e-96ad-00ba8efeb3ca from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...