0s autopkgtest [08:09:06]: starting date and time: 2024-11-13 08:09:06+0000 0s autopkgtest [08:09:06]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [08:09:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xmzp2ydi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade bottleneck --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-24.secgroup --name adt-plucky-amd64-bottleneck-20241113-080905-juju-7f2275-prod-proposed-migration-environment-2-61dd9111-9074-4506-8580-11945bae913d --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 48s autopkgtest [08:09:54]: testbed dpkg architecture: amd64 48s autopkgtest [08:09:54]: testbed apt version: 2.9.8 48s autopkgtest [08:09:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 49s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 49s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 49s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 49s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 49s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [848 kB] 50s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 50s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 50s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 50s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 50s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 50s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 50s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 50s Fetched 2171 kB in 1s (1794 kB/s) 50s Reading package lists... 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 53s Calculating upgrade... 53s The following NEW packages will be installed: 53s python3.13-gdbm 53s The following packages will be upgraded: 53s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 53s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 53s Need to get 253 kB of archives. 53s After this operation, 147 kB of additional disk space will be used. 53s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 53s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 53s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 53s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 53s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 53s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 54s Fetched 253 kB in 0s (618 kB/s) 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 54s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 54s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Setting up python3-minimal (3.12.7-1) ... 54s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 54s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 54s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 54s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 54s Selecting previously unselected package python3.13-gdbm. 54s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 54s Unpacking python3.13-gdbm (3.13.0-2) ... 54s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 54s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 54s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 54s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 54s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 54s Setting up python3.13-gdbm (3.13.0-2) ... 54s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 54s Setting up python3 (3.12.7-1) ... 54s Setting up python3-gdbm:amd64 (3.12.7-1) ... 54s Processing triggers for man-db (2.12.1-3) ... 55s Processing triggers for libc-bin (2.40-1ubuntu3) ... 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 55s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 56s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 56s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 56s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 57s Reading package lists... 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade... 57s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 58s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s autopkgtest [08:10:06]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 61s autopkgtest [08:10:07]: @@@@@@@@@@@@@@@@@@@@ apt-source bottleneck 62s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bottleneck 1.3.8+ds1-1 (dsc) [2362 B] 62s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bottleneck 1.3.8+ds1-1 (tar) [76.3 kB] 62s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bottleneck 1.3.8+ds1-1 (diff) [6020 B] 63s gpgv: Signature made Wed May 29 09:30:28 2024 UTC 63s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 63s gpgv: Can't check signature: No public key 63s dpkg-source: warning: cannot verify inline signature for ./bottleneck_1.3.8+ds1-1.dsc: no acceptable signature found 63s autopkgtest [08:10:09]: testing package bottleneck version 1.3.8+ds1-1 63s autopkgtest [08:10:09]: build not needed 63s autopkgtest [08:10:09]: test command1: preparing testbed 64s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Starting pkgProblemResolver with broken count: 0 65s Starting 2 pkgProblemResolver with broken count: 0 65s Done 65s The following additional packages will be installed: 65s libblas3 libgfortran5 liblapack3 libpython3.13-minimal libpython3.13-stdlib 65s python3-all python3-bottleneck python3-iniconfig python3-numpy 65s python3-packaging python3-pluggy python3-pytest python3.13 65s python3.13-minimal 65s Suggested packages: 65s python-bottleneck-doc gcc gfortran python-numpy-doc python3-dev 65s python3.13-venv python3.13-doc binfmt-support 65s The following NEW packages will be installed: 65s autopkgtest-satdep libblas3 libgfortran5 liblapack3 libpython3.13-minimal 65s libpython3.13-stdlib python3-all python3-bottleneck python3-iniconfig 65s python3-numpy python3-packaging python3-pluggy python3-pytest python3.13 65s python3.13-minimal 65s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 14.6 MB/14.6 MB of archives. 65s After this operation, 60.0 MB of additional disk space will be used. 65s Get:1 /tmp/autopkgtest.G4VomQ/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 65s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 66s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 66s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-3build2 [247 kB] 66s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 66s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-3build2 [2668 kB] 66s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 66s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 66s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 66s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11build1 [4479 kB] 67s Get:11 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bottleneck amd64 1.3.8+ds1-1 [85.7 kB] 67s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 67s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 67s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 67s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 67s Fetched 14.6 MB in 1s (10.2 MB/s) 67s Selecting previously unselected package libpython3.13-minimal:amd64. 67s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 67s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 67s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 67s Selecting previously unselected package python3.13-minimal. 67s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 67s Unpacking python3.13-minimal (3.13.0-2) ... 67s Selecting previously unselected package libblas3:amd64. 67s Preparing to unpack .../02-libblas3_3.12.0-3build2_amd64.deb ... 67s Unpacking libblas3:amd64 (3.12.0-3build2) ... 67s Selecting previously unselected package libgfortran5:amd64. 67s Preparing to unpack .../03-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 67s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 67s Selecting previously unselected package liblapack3:amd64. 67s Preparing to unpack .../04-liblapack3_3.12.0-3build2_amd64.deb ... 67s Unpacking liblapack3:amd64 (3.12.0-3build2) ... 67s Selecting previously unselected package libpython3.13-stdlib:amd64. 67s Preparing to unpack .../05-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 67s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 67s Selecting previously unselected package python3.13. 67s Preparing to unpack .../06-python3.13_3.13.0-2_amd64.deb ... 67s Unpacking python3.13 (3.13.0-2) ... 67s Selecting previously unselected package python3-all. 67s Preparing to unpack .../07-python3-all_3.12.7-1_amd64.deb ... 67s Unpacking python3-all (3.12.7-1) ... 67s Selecting previously unselected package python3-numpy. 67s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-11build1_amd64.deb ... 67s Unpacking python3-numpy (1:1.26.4+ds-11build1) ... 68s Selecting previously unselected package python3-bottleneck. 68s Preparing to unpack .../09-python3-bottleneck_1.3.8+ds1-1_amd64.deb ... 68s Unpacking python3-bottleneck (1.3.8+ds1-1) ... 68s Selecting previously unselected package python3-iniconfig. 68s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 68s Unpacking python3-iniconfig (1.1.1-2) ... 68s Selecting previously unselected package python3-packaging. 68s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 68s Unpacking python3-packaging (24.1-1) ... 68s Selecting previously unselected package python3-pluggy. 68s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ... 68s Unpacking python3-pluggy (1.5.0-1) ... 68s Selecting previously unselected package python3-pytest. 68s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ... 68s Unpacking python3-pytest (8.3.3-1) ... 68s Selecting previously unselected package autopkgtest-satdep. 68s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 68s Unpacking autopkgtest-satdep (0) ... 68s Setting up python3-iniconfig (1.1.1-2) ... 68s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 68s Setting up libblas3:amd64 (3.12.0-3build2) ... 68s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 68s Setting up python3-packaging (24.1-1) ... 68s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 68s Setting up python3-pluggy (1.5.0-1) ... 68s Setting up python3.13-minimal (3.13.0-2) ... 69s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 69s Setting up liblapack3:amd64 (3.12.0-3build2) ... 69s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 69s Setting up python3.13 (3.13.0-2) ... 70s Setting up python3-pytest (8.3.3-1) ... 70s Setting up python3-all (3.12.7-1) ... 70s Setting up python3-numpy (1:1.26.4+ds-11build1) ... 73s Setting up python3-bottleneck (1.3.8+ds1-1) ... 73s Setting up autopkgtest-satdep (0) ... 73s Processing triggers for systemd (256.5-2ubuntu4) ... 74s Processing triggers for man-db (2.12.1-3) ... 74s Processing triggers for libc-bin (2.40-1ubuntu3) ... 76s (Reading database ... 77397 files and directories currently installed.) 76s Removing autopkgtest-satdep (0) ... 77s autopkgtest [08:10:23]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import bottleneck as bn; bn.test()" ; done 77s autopkgtest [08:10:23]: test command1: [----------------------- 77s Testing with python3.13: 77s Traceback (most recent call last): 77s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 24, in 77s from . import multiarray 77s File "/usr/lib/python3/dist-packages/numpy/core/multiarray.py", line 10, in 77s from . import overrides 77s File "/usr/lib/python3/dist-packages/numpy/core/overrides.py", line 8, in 77s from numpy.core._multiarray_umath import ( 77s add_docstring, _get_implementing_args, _ArrayFunctionDispatcher) 77s ModuleNotFoundError: No module named 'numpy.core._multiarray_umath' 77s 77s During handling of the above exception, another exception occurred: 77s 77s Traceback (most recent call last): 77s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 130, in 77s from numpy.__config__ import show as show_config 77s File "/usr/lib/python3/dist-packages/numpy/__config__.py", line 4, in 77s from numpy.core._multiarray_umath import ( 77s ...<3 lines>... 77s ) 77s File "/usr/lib/python3/dist-packages/numpy/core/__init__.py", line 50, in 77s raise ImportError(msg) 77s ImportError: 77s 77s IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! 77s 77s Importing the numpy C-extensions failed. This error can happen for 77s many reasons, often due to issues with your setup or how NumPy was 77s installed. 77s 77s We have compiled some common reasons and troubleshooting tips at: 77s 77s https://numpy.org/devdocs/user/troubleshooting-importerror.html 77s 77s Please note and check the following: 77s 77s * The Python version is: Python3.13 from "/usr/bin/python3.13" 77s * The NumPy version is: "1.26.4" 77s 77s and make sure that they are the versions you expect. 77s Please carefully study the documentation linked above for further help. 77s 77s Original error was: No module named 'numpy.core._multiarray_umath' 77s 77s 77s The above exception was the direct cause of the following exception: 77s 77s Traceback (most recent call last): 77s File "", line 1, in 77s import bottleneck as bn; bn.test() 77s ^^^^^^^^^^^^^^^^^^^^^^^ 77s File "/usr/lib/python3/dist-packages/bottleneck/__init__.py", line 1, in 77s from bottleneck.benchmark.bench import bench 77s File "/usr/lib/python3/dist-packages/bottleneck/benchmark/bench.py", line 1, in 77s import numpy as np 77s File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 135, in 77s raise ImportError(msg) from e 77s ImportError: Error importing numpy: you should not try to import numpy from 77s its source directory; please exit the numpy source tree, and relaunch 77s your python interpreter from there. 77s autopkgtest [08:10:23]: test command1: -----------------------] 78s command1 FAIL non-zero exit status 1 78s autopkgtest [08:10:24]: test command1: - - - - - - - - - - results - - - - - - - - - - 78s autopkgtest [08:10:24]: @@@@@@@@@@@@@@@@@@@@ summary 78s command1 FAIL non-zero exit status 1 83s virt: nova [W] Skipping flock for amd64 83s virt: Creating nova instance adt-plucky-amd64-bottleneck-20241113-080905-juju-7f2275-prod-proposed-migration-environment-2-61dd9111-9074-4506-8580-11945bae913d from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 62c21ac4-2290-4c8d-8313-dddd18eacff4)...