0s autopkgtest [06:53:15]: starting date and time: 2025-02-21 06:53:15+0000 0s autopkgtest [06:53:15]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [06:53:15]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.wgjbnnnh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:numpy --apt-upgrade bmtk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=numpy/1:2.2.3+ds-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-24.secgroup --name adt-plucky-amd64-bmtk-20250221-065315-juju-7f2275-prod-proposed-migration-environment-15-4e87e6ff-5b13-491c-a7a4-0663e1eec14a --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 55s autopkgtest [06:54:10]: testbed dpkg architecture: amd64 55s autopkgtest [06:54:10]: testbed apt version: 2.9.30ubuntu1 55s autopkgtest [06:54:10]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [06:54:10]: testbed release detected to be: None 56s autopkgtest [06:54:11]: updating testbed package index (apt update) 57s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 57s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.8 kB] 57s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [94.6 kB] 57s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [722 kB] 57s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 57s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [115 kB] 57s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [144 kB] 57s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2412 B] 57s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [7984 B] 57s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [708 kB] 57s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [280 kB] 57s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [9128 B] 57s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [22.5 kB] 57s Fetched 2234 kB in 1s (2265 kB/s) 58s Reading package lists... 59s + lsb_release --codename --short 59s Reading package lists...+ RELEASE=plucky 59s + cat 59s + [ plucky != trusty ] 59s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 59s 59s Building dependency tree... 59s Reading state information... 59s Calculating upgrade... 59s Calculating upgrade... 59s The following packages will be upgraded: 59s cloud-init cloud-init-base 60s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 60s Need to get 618 kB of archives. 60s After this operation, 19.5 kB of additional disk space will be used. 60s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init-base all 25.1-0ubuntu1 [616 kB] 60s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 cloud-init all 25.1-0ubuntu1 [2088 B] 60s Preconfiguring packages ... 60s Fetched 618 kB in 1s (1155 kB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108974 files and directories currently installed.) 61s Preparing to unpack .../cloud-init-base_25.1-0ubuntu1_all.deb ... 61s /usr/bin/py3clean:101: DeprecationWarning: glob.glob1 is deprecated and will be removed in Python 3.15. Use glob.glob and pass a directory to its root_dir argument instead. 61s for fn in glob1(directory, "%s.*" % fname): 61s Unpacking cloud-init-base (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 61s Preparing to unpack .../cloud-init_25.1-0ubuntu1_all.deb ... 61s Unpacking cloud-init (25.1-0ubuntu1) over (25.1~3geb1965a4-0ubuntu1) ... 61s Setting up cloud-init-base (25.1-0ubuntu1) ... 62s Setting up cloud-init (25.1-0ubuntu1) ... 62s Processing triggers for man-db (2.13.0-1) ... 63s Processing triggers for rsyslog (8.2412.0-2ubuntu1) ... 63s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 63s + /usr/lib/apt/apt-helper analyze-pattern ?true 63s + uname -r 63s + sed s/\./\\./g 63s + running_kernel_pattern=^linux-.*6\.12\.0-15-generic.* 63s + apt list ?obsolete 63s + tail -n+2 63s + cut -d/ -f1 63s + grep -v ^linux-.*6\.12\.0-15-generic.* 63s + true 63s + obsolete_pkgs= 63s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove 63s Reading package lists... 64s Building dependency tree... 64s Reading state information... 64s Solving dependencies... 64s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s + grep -q trusty /etc/lsb-release 64s + [ ! -d /usr/share/doc/unattended-upgrades ] 64s + [ ! -d /usr/share/doc/lxd ] 64s + [ ! -d /usr/share/doc/lxd-client ] 64s + [ ! -d /usr/share/doc/snapd ] 64s + type iptables 64s + cat 64s + chmod 755 /etc/rc.local 64s + . /etc/rc.local 64s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 64s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 64s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 64s + uname -m 64s + [ x86_64 = ppc64le ] 64s + [ -d /run/systemd/system ] 64s + systemd-detect-virt --quiet --vm 64s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 64s + cat 64s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 64s + echo COMPRESS=lz4 64s autopkgtest [06:54:19]: upgrading testbed (apt dist-upgrade and autopurge) 64s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 65s Starting 2 pkgProblemResolver with broken count: 0 65s Done 65s Entering ResolveByKeep 66s 66s Calculating upgrade... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [06:54:22]: rebooting testbed after setup commands that affected boot 90s autopkgtest [06:54:45]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Tue Feb 4 16:02:16 UTC 2025 92s autopkgtest [06:54:47]: @@@@@@@@@@@@@@@@@@@@ apt-source bmtk 98s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bmtk 1.1.1+ds-3 (dsc) [2744 B] 98s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bmtk 1.1.1+ds-3 (tar) [62.8 MB] 98s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bmtk 1.1.1+ds-3 (diff) [10.9 kB] 99s gpgv: Signature made Fri Dec 6 20:37:01 2024 UTC 99s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 99s gpgv: issuer "tille@debian.org" 99s gpgv: Can't check signature: No public key 99s dpkg-source: warning: cannot verify inline signature for ./bmtk_1.1.1+ds-3.dsc: no acceptable signature found 101s autopkgtest [06:54:56]: testing package bmtk version 1.1.1+ds-3 101s autopkgtest [06:54:56]: build not needed 110s autopkgtest [06:55:04]: test run-unit-test: preparing testbed 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 111s The following NEW packages will be installed: 111s blt fontconfig-config fonts-bebas-neue fonts-dejavu-core fonts-dejavu-mono 111s fonts-lyx fonts-mathjax libaec0 libamd-comgr2 libamdhip64-5 libblas3 111s libdeflate0 libevent-pthreads-2.1-7t64 libfabric1 libfontconfig1 111s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 111s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 111s libibmad5 libibumad3 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 111s libjs-jquery libjs-jquery-ui libjs-mathjax libjs-requirejs libjs-sphinxdoc 111s libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libllvm17t64 111s liblzf1 libmunge2 libopenjp2-7 libopenmpi40 libpciaccess0 libpmix2t64 111s libpsm-infinipath1 libpsm2-2 libqhull-r8.0 libraqm0 librdmacm1t64 111s libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 libucx0 libwebp7 111s libwebpdemux2 libwebpmux3 libxft2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 111s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common 111s python-matplotlib-data python3-all python3-bmtk python3-bmtk-doc 111s python3-bmtk-examples python3-brotli python3-contourpy python3-cycler 111s python3-dateutil python3-decorator python3-fonttools python3-fs python3-h5py 111s python3-h5py-serial python3-imageio python3-iniconfig python3-kiwisolver 111s python3-lazy-loader python3-lxml python3-lz4 python3-matplotlib 111s python3-mpi4py python3-mpmath python3-networkx python3-numpy 111s python3-numpy-dev python3-packaging python3-pandas python3-pandas-lib 111s python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy 111s python3-pytest python3-pytz python3-scipy python3-six python3-skimage 111s python3-skimage-lib python3-sympy python3-tifffile python3-tk python3-tz 111s python3-ufolib2 python3-unicodedata2 python3.12 python3.12-minimal 111s python3.12-tk python3.13-tk tk8.6-blt2.5 unicode-data x11-common 111s 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 279 MB of archives. 111s After this operation, 1102 MB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-minimal amd64 3.12.9-1 [2348 kB] 112s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-2 [147 kB] 112s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 112s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 15-20250213-1ubuntu1 [920 kB] 112s Get:5 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 112s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-numpy amd64 1:2.2.3+ds-2 [8537 kB] 112s Get:7 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12 amd64 3.12.9-1 [671 kB] 112s Get:8 http://ftpmaster.internal/ubuntu plucky/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 112s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 112s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 112s Get:11 http://ftpmaster.internal/ubuntu plucky/main amd64 fontconfig-config amd64 2.15.0-2ubuntu1 [37.4 kB] 112s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libfontconfig1 amd64 2.15.0-2ubuntu1 [164 kB] 112s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 112s Get:14 http://ftpmaster.internal/ubuntu plucky/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 112s Get:15 http://ftpmaster.internal/ubuntu plucky/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 112s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 112s Get:17 http://ftpmaster.internal/ubuntu plucky/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 112s Get:18 http://ftpmaster.internal/ubuntu plucky/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB] 112s Get:19 http://ftpmaster.internal/ubuntu plucky/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B] 112s Get:20 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-bebas-neue all 3.0-2 [94.6 kB] 112s Get:21 http://ftpmaster.internal/ubuntu plucky/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 112s Get:22 http://ftpmaster.internal/ubuntu plucky/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 113s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 113s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-20 [26.0 MB] 114s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 114s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 114s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 114s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 115s Get:29 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.23-1 [64.1 kB] 115s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 115s Get:31 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 115s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 115s Get:33 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 55.0-1ubuntu1 [71.5 kB] 115s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 115s Get:35 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 15-20250213-1ubuntu1 [148 kB] 115s Get:36 http://ftpmaster.internal/ubuntu plucky/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 115s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 115s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 115s Get:39 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 115s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 115s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 115s Get:42 http://ftpmaster.internal/ubuntu plucky/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 115s Get:43 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 115s Get:44 http://ftpmaster.internal/ubuntu plucky/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 115s Get:45 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 115s Get:46 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 115s Get:47 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 115s Get:48 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.9 kB] 115s Get:49 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 115s Get:50 http://ftpmaster.internal/ubuntu plucky/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 115s Get:51 http://ftpmaster.internal/ubuntu plucky/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 115s Get:52 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 115s Get:53 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 115s Get:54 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 115s Get:55 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 115s Get:56 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 115s Get:57 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 115s Get:58 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.6-3 [714 kB] 115s Get:59 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 55.0-1ubuntu1 [29.7 kB] 115s Get:60 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 55.0-1ubuntu1 [42.7 kB] 115s Get:61 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 115s Get:62 http://ftpmaster.internal/ubuntu plucky/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 116s Get:63 http://ftpmaster.internal/ubuntu plucky/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 116s Get:64 http://ftpmaster.internal/ubuntu plucky/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 116s Get:65 http://ftpmaster.internal/ubuntu plucky/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 116s Get:66 http://ftpmaster.internal/ubuntu plucky/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 116s Get:67 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 116s Get:68 http://ftpmaster.internal/ubuntu plucky/main amd64 libtiff6 amd64 4.5.1+git230720-4ubuntu4 [200 kB] 116s Get:69 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 116s Get:70 http://ftpmaster.internal/ubuntu plucky/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 116s Get:71 http://ftpmaster.internal/ubuntu plucky/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu2 [175 kB] 116s Get:72 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 116s Get:73 http://ftpmaster.internal/ubuntu plucky/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 116s Get:74 http://ftpmaster.internal/ubuntu plucky/universe amd64 python-matplotlib-data all 3.8.3-3ubuntu2 [2929 kB] 116s Get:75 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.13.1-1~exp2 [894 B] 116s Get:76 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py-serial amd64 3.12.1-1 [1677 kB] 116s Get:77 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-h5py all 3.12.1-1 [7970 B] 116s Get:78 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-dateutil all 2.9.0-3 [80.2 kB] 116s Get:79 http://ftpmaster.internal/ubuntu plucky/main amd64 libopenjp2-7 amd64 2.5.0-2ubuntu3 [217 kB] 116s Get:80 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pil amd64 11.1.0-5 [589 kB] 116s Get:81 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.12-tk amd64 3.12.9-1 [116 kB] 116s Get:82 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-tk amd64 3.13.2-1 [107 kB] 116s Get:83 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tk amd64 3.13.1-1 [9770 B] 116s Get:84 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pil.imagetk amd64 11.1.0-5 [9936 B] 116s Get:85 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-contourpy amd64 1.3.1-1 [271 kB] 116s Get:86 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 116s Get:87 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-brotli amd64 1.1.0-2build3 [368 kB] 116s Get:88 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-pytz all 2025.1-3 [162 kB] 116s Get:89 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-tz all 2025.1-3 [1866 B] 116s Get:90 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 116s Get:91 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fs all 2.4.16-6 [90.7 kB] 116s Get:92 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-lxml amd64 5.3.1-1 [1831 kB] 116s Get:93 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1 [27.4 kB] 116s Get:94 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 116s Get:95 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-scipy amd64 1.14.1-4ubuntu1 [22.3 MB] 117s Get:96 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 117s Get:97 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-sympy all 1.13.3-1 [4228 kB] 117s Get:98 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 117s Get:99 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build2 [360 kB] 117s Get:100 http://ftpmaster.internal/ubuntu plucky/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 118s Get:101 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-fonttools amd64 4.55.3-2 [1755 kB] 118s Get:102 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-kiwisolver amd64 1.4.7-3 [70.4 kB] 118s Get:103 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 118s Get:104 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-matplotlib amd64 3.8.3-3ubuntu2 [4697 kB] 119s Get:105 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [8248 kB] 119s Get:106 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pandas all 2.2.3+dfsg-8 [3112 kB] 119s Get:107 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-six all 1.17.0-1 [13.2 kB] 119s Get:108 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 120s Get:109 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-skimage-lib amd64 0.25.1-1 [5052 kB] 121s Get:110 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-imageio all 2.37.0-1 [234 kB] 121s Get:111 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-lazy-loader all 0.4-1 [11.1 kB] 121s Get:112 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-tifffile all 20250110-1 [177 kB] 121s Get:113 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-skimage all 0.25.1-1 [21.5 MB] 123s Get:114 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bmtk amd64 1.1.1+ds-3 [575 kB] 123s Get:115 http://ftpmaster.internal/ubuntu plucky/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 124s Get:116 http://ftpmaster.internal/ubuntu plucky/universe amd64 libjs-requirejs all 2.3.7+ds+~2.1.37-1 [201 kB] 124s Get:117 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bmtk-doc all 1.1.1+ds-3 [52.9 MB] 129s Get:118 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-bmtk-examples all 1.1.1+ds-3 [32.6 MB] 133s Get:119 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 133s Get:120 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 133s Get:121 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.4-1 [252 kB] 133s Get:122 http://ftpmaster.internal/ubuntu plucky/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 133s Get:123 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-mpi4py amd64 4.0.1-6ubuntu1 [1098 kB] 133s Fetched 279 MB in 22s (12.9 MB/s) 133s Selecting previously unselected package python3.12-minimal. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 108975 files and directories currently installed.) 133s Preparing to unpack .../000-python3.12-minimal_3.12.9-1_amd64.deb ... 133s Unpacking python3.12-minimal (3.12.9-1) ... 133s Selecting previously unselected package python3-numpy-dev:amd64. 133s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-2_amd64.deb ... 133s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... 133s Selecting previously unselected package libblas3:amd64. 134s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... 134s Unpacking libblas3:amd64 (3.12.1-2) ... 134s Selecting previously unselected package libgfortran5:amd64. 134s Preparing to unpack .../003-libgfortran5_15-20250213-1ubuntu1_amd64.deb ... 134s Unpacking libgfortran5:amd64 (15-20250213-1ubuntu1) ... 134s Selecting previously unselected package liblapack3:amd64. 134s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... 134s Unpacking liblapack3:amd64 (3.12.1-2) ... 134s Selecting previously unselected package python3-numpy. 134s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-2_amd64.deb ... 134s Unpacking python3-numpy (1:2.2.3+ds-2) ... 134s Selecting previously unselected package python3.12. 134s Preparing to unpack .../006-python3.12_3.12.9-1_amd64.deb ... 134s Unpacking python3.12 (3.12.9-1) ... 134s Selecting previously unselected package libtcl8.6:amd64. 134s Preparing to unpack .../007-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 134s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 134s Selecting previously unselected package fonts-dejavu-mono. 134s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 134s Unpacking fonts-dejavu-mono (2.37-8) ... 134s Selecting previously unselected package fonts-dejavu-core. 134s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 134s Unpacking fonts-dejavu-core (2.37-8) ... 134s Selecting previously unselected package fontconfig-config. 134s Preparing to unpack .../010-fontconfig-config_2.15.0-2ubuntu1_amd64.deb ... 135s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 135s Selecting previously unselected package libfontconfig1:amd64. 135s Preparing to unpack .../011-libfontconfig1_2.15.0-2ubuntu1_amd64.deb ... 135s Unpacking libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 135s Selecting previously unselected package libxrender1:amd64. 135s Preparing to unpack .../012-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 135s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 135s Selecting previously unselected package libxft2:amd64. 135s Preparing to unpack .../013-libxft2_2.3.6-1build1_amd64.deb ... 135s Unpacking libxft2:amd64 (2.3.6-1build1) ... 135s Selecting previously unselected package x11-common. 135s Preparing to unpack .../014-x11-common_1%3a7.7+23ubuntu3_all.deb ... 135s Unpacking x11-common (1:7.7+23ubuntu3) ... 135s Selecting previously unselected package libxss1:amd64. 135s Preparing to unpack .../015-libxss1_1%3a1.2.3-1build3_amd64.deb ... 135s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 135s Selecting previously unselected package libtk8.6:amd64. 135s Preparing to unpack .../016-libtk8.6_8.6.16-1_amd64.deb ... 135s Unpacking libtk8.6:amd64 (8.6.16-1) ... 135s Selecting previously unselected package tk8.6-blt2.5. 135s Preparing to unpack .../017-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ... 135s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 135s Selecting previously unselected package blt. 135s Preparing to unpack .../018-blt_2.5.3+dfsg-7build1_amd64.deb ... 135s Unpacking blt (2.5.3+dfsg-7build1) ... 135s Selecting previously unselected package fonts-bebas-neue. 135s Preparing to unpack .../019-fonts-bebas-neue_3.0-2_all.deb ... 135s Unpacking fonts-bebas-neue (3.0-2) ... 135s Selecting previously unselected package fonts-lyx. 135s Preparing to unpack .../020-fonts-lyx_2.4.3-1_all.deb ... 135s Unpacking fonts-lyx (2.4.3-1) ... 135s Selecting previously unselected package fonts-mathjax. 135s Preparing to unpack .../021-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 135s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 135s Selecting previously unselected package libaec0:amd64. 135s Preparing to unpack .../022-libaec0_1.1.3-1_amd64.deb ... 135s Unpacking libaec0:amd64 (1.1.3-1) ... 135s Selecting previously unselected package libllvm17t64:amd64. 135s Preparing to unpack .../023-libllvm17t64_1%3a17.0.6-20_amd64.deb ... 135s Unpacking libllvm17t64:amd64 (1:17.0.6-20) ... 136s Selecting previously unselected package libamd-comgr2:amd64. 136s Preparing to unpack .../024-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 136s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 136s Selecting previously unselected package libhsakmt1:amd64. 136s Preparing to unpack .../025-libhsakmt1_5.7.0-1build1_amd64.deb ... 136s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 136s Selecting previously unselected package libhsa-runtime64-1. 136s Preparing to unpack .../026-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 136s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 136s Selecting previously unselected package libamdhip64-5. 136s Preparing to unpack .../027-libamdhip64-5_5.7.1-5_amd64.deb ... 136s Unpacking libamdhip64-5 (5.7.1-5) ... 136s Selecting previously unselected package libdeflate0:amd64. 136s Preparing to unpack .../028-libdeflate0_1.23-1_amd64.deb ... 136s Unpacking libdeflate0:amd64 (1.23-1) ... 136s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 136s Preparing to unpack .../029-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 136s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 136s Selecting previously unselected package libpsm-infinipath1. 136s Preparing to unpack .../030-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 136s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 136s Selecting previously unselected package libpsm2-2. 136s Preparing to unpack .../031-libpsm2-2_11.2.185-2.1_amd64.deb ... 136s Unpacking libpsm2-2 (11.2.185-2.1) ... 136s Selecting previously unselected package librdmacm1t64:amd64. 136s Preparing to unpack .../032-librdmacm1t64_55.0-1ubuntu1_amd64.deb ... 136s Unpacking librdmacm1t64:amd64 (55.0-1ubuntu1) ... 136s Selecting previously unselected package libfabric1:amd64. 136s Preparing to unpack .../033-libfabric1_1.17.0-3.1_amd64.deb ... 136s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 136s Selecting previously unselected package libgomp1:amd64. 136s Preparing to unpack .../034-libgomp1_15-20250213-1ubuntu1_amd64.deb ... 136s Unpacking libgomp1:amd64 (15-20250213-1ubuntu1) ... 136s Selecting previously unselected package libgraphite2-3:amd64. 136s Preparing to unpack .../035-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 136s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 137s Selecting previously unselected package libharfbuzz0b:amd64. 137s Preparing to unpack .../036-libharfbuzz0b_10.2.0-1_amd64.deb ... 137s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 137s Selecting previously unselected package libsz2:amd64. 137s Preparing to unpack .../037-libsz2_1.1.3-1_amd64.deb ... 137s Unpacking libsz2:amd64 (1.1.3-1) ... 137s Selecting previously unselected package libhdf5-310:amd64. 137s Preparing to unpack .../038-libhdf5-310_1.14.5+repack-3_amd64.deb ... 137s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 137s Selecting previously unselected package libhdf5-hl-310:amd64. 137s Preparing to unpack .../039-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 137s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 137s Selecting previously unselected package libhwloc15:amd64. 137s Preparing to unpack .../040-libhwloc15_2.12.0-1_amd64.deb ... 137s Unpacking libhwloc15:amd64 (2.12.0-1) ... 137s Selecting previously unselected package libimagequant0:amd64. 137s Preparing to unpack .../041-libimagequant0_2.18.0-1build1_amd64.deb ... 137s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 137s Selecting previously unselected package libjpeg-turbo8:amd64. 137s Preparing to unpack .../042-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 137s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 137s Selecting previously unselected package libjpeg8:amd64. 137s Preparing to unpack .../043-libjpeg8_8c-2ubuntu11_amd64.deb ... 137s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 137s Selecting previously unselected package libjs-jquery. 137s Preparing to unpack .../044-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 137s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 137s Selecting previously unselected package libjs-jquery-ui. 137s Preparing to unpack .../045-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 137s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 137s Selecting previously unselected package libjs-underscore. 137s Preparing to unpack .../046-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 137s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 137s Selecting previously unselected package libjs-sphinxdoc. 137s Preparing to unpack .../047-libjs-sphinxdoc_8.1.3-4_all.deb ... 137s Unpacking libjs-sphinxdoc (8.1.3-4) ... 137s Selecting previously unselected package liblbfgsb0:amd64. 137s Preparing to unpack .../048-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 137s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 137s Selecting previously unselected package liblcms2-2:amd64. 137s Preparing to unpack .../049-liblcms2-2_2.16-2_amd64.deb ... 137s Unpacking liblcms2-2:amd64 (2.16-2) ... 137s Selecting previously unselected package liblerc4:amd64. 137s Preparing to unpack .../050-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 137s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 137s Selecting previously unselected package liblzf1:amd64. 137s Preparing to unpack .../051-liblzf1_3.6-4_amd64.deb ... 137s Unpacking liblzf1:amd64 (3.6-4) ... 137s Selecting previously unselected package libmunge2:amd64. 137s Preparing to unpack .../052-libmunge2_0.5.16-1_amd64.deb ... 137s Unpacking libmunge2:amd64 (0.5.16-1) ... 137s Selecting previously unselected package libpciaccess0:amd64. 137s Preparing to unpack .../053-libpciaccess0_0.17-3build1_amd64.deb ... 137s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 137s Selecting previously unselected package libxnvctrl0:amd64. 137s Preparing to unpack .../054-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 137s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 137s Selecting previously unselected package ocl-icd-libopencl1:amd64. 137s Preparing to unpack .../055-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 137s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 137s Selecting previously unselected package libhwloc-plugins:amd64. 137s Preparing to unpack .../056-libhwloc-plugins_2.12.0-1_amd64.deb ... 137s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 137s Selecting previously unselected package libpmix2t64:amd64. 137s Preparing to unpack .../057-libpmix2t64_5.0.6-3_amd64.deb ... 137s Unpacking libpmix2t64:amd64 (5.0.6-3) ... 137s Selecting previously unselected package libibumad3:amd64. 137s Preparing to unpack .../058-libibumad3_55.0-1ubuntu1_amd64.deb ... 137s Unpacking libibumad3:amd64 (55.0-1ubuntu1) ... 137s Selecting previously unselected package libibmad5:amd64. 137s Preparing to unpack .../059-libibmad5_55.0-1ubuntu1_amd64.deb ... 137s Unpacking libibmad5:amd64 (55.0-1ubuntu1) ... 137s Selecting previously unselected package libucx0:amd64. 137s Preparing to unpack .../060-libucx0_1.17.0+ds-3build1_amd64.deb ... 137s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 137s Selecting previously unselected package libopenmpi40:amd64. 137s Preparing to unpack .../061-libopenmpi40_5.0.7-1_amd64.deb ... 137s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 138s Selecting previously unselected package libqhull-r8.0:amd64. 138s Preparing to unpack .../062-libqhull-r8.0_2020.2-6build1_amd64.deb ... 138s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 138s Selecting previously unselected package libraqm0:amd64. 138s Preparing to unpack .../063-libraqm0_0.10.2-1_amd64.deb ... 138s Unpacking libraqm0:amd64 (0.10.2-1) ... 138s Selecting previously unselected package libsharpyuv0:amd64. 138s Preparing to unpack .../064-libsharpyuv0_1.5.0-0.1_amd64.deb ... 138s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 138s Selecting previously unselected package libjbig0:amd64. 138s Preparing to unpack .../065-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 138s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 138s Selecting previously unselected package libwebp7:amd64. 138s Preparing to unpack .../066-libwebp7_1.5.0-0.1_amd64.deb ... 138s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 138s Selecting previously unselected package libtiff6:amd64. 138s Preparing to unpack .../067-libtiff6_4.5.1+git230720-4ubuntu4_amd64.deb ... 138s Unpacking libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 138s Selecting previously unselected package libwebpdemux2:amd64. 138s Preparing to unpack .../068-libwebpdemux2_1.5.0-0.1_amd64.deb ... 138s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 138s Selecting previously unselected package libwebpmux3:amd64. 138s Preparing to unpack .../069-libwebpmux3_1.5.0-0.1_amd64.deb ... 138s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 138s Selecting previously unselected package libxslt1.1:amd64. 138s Preparing to unpack .../070-libxslt1.1_1.1.39-0exp1ubuntu2_amd64.deb ... 138s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 138s Selecting previously unselected package openmpi-common. 138s Preparing to unpack .../071-openmpi-common_5.0.7-1_all.deb ... 138s Unpacking openmpi-common (5.0.7-1) ... 138s Selecting previously unselected package openmpi-bin. 138s Preparing to unpack .../072-openmpi-bin_5.0.7-1_amd64.deb ... 138s Unpacking openmpi-bin (5.0.7-1) ... 138s Selecting previously unselected package python-matplotlib-data. 138s Preparing to unpack .../073-python-matplotlib-data_3.8.3-3ubuntu2_all.deb ... 138s Unpacking python-matplotlib-data (3.8.3-3ubuntu2) ... 138s Selecting previously unselected package python3-all. 138s Preparing to unpack .../074-python3-all_3.13.1-1~exp2_amd64.deb ... 138s Unpacking python3-all (3.13.1-1~exp2) ... 138s Selecting previously unselected package python3-h5py-serial. 138s Preparing to unpack .../075-python3-h5py-serial_3.12.1-1_amd64.deb ... 138s Unpacking python3-h5py-serial (3.12.1-1) ... 138s Selecting previously unselected package python3-h5py. 138s Preparing to unpack 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up libjs-mathjax (2.7.9+dfsg-1) ... 146s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 146s Setting up python3-lz4 (4.4.0+dfsg-1) ... 146s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 146s Setting up python3-unicodedata2 (15.1.0+ds-1build2) ... 146s Setting up fonts-lyx (2.4.3-1) ... 146s Setting up python3.12 (3.12.9-1) ... 147s Setting up x11-common (1:7.7+23ubuntu3) ... 147s Setting up libibumad3:amd64 (55.0-1ubuntu1) ... 147s Setting up libdeflate0:amd64 (1.23-1) ... 147s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 147s Setting up python3-all (3.13.1-1~exp2) ... 147s Setting up python3-pytz (2025.1-3) ... 147s Setting up libibmad5:amd64 (55.0-1ubuntu1) ... 147s Setting up libgomp1:amd64 (15-20250213-1ubuntu1) ... 147s Setting up libjs-requirejs (2.3.7+ds+~2.1.37-1) ... 147s Setting up python3-networkx (3.2.1-4ubuntu1) ... 149s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 149s Setting up libaec0:amd64 (1.1.3-1) ... 149s Setting up python3-platformdirs (4.3.6-1) ... 150s Setting up python3-tz (2025.1-3) ... 150s Setting up python3-fs (2.4.16-6) ... 150s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 150s Setting up unicode-data (15.1.0-1) ... 150s Setting up python3-six (1.17.0-1) ... 150s Setting up python3-decorator (5.1.1-5) ... 150s Setting up libblas3:amd64 (3.12.1-2) ... 150s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 150s Setting up python3-packaging (24.2-1) ... 150s Setting up libmunge2:amd64 (0.5.16-1) ... 150s Setting up libllvm17t64:amd64 (1:17.0.6-20) ... 150s Setting up python3-brotli (1.1.0-2build3) ... 150s Setting up liblzf1:amd64 (3.6-4) ... 150s Setting up python3-cycler (0.12.1-1) ... 150s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 150s Setting up fonts-dejavu-mono (2.37-8) ... 150s Setting up python3-kiwisolver (1.4.7-3) ... 151s Setting up libhwloc15:amd64 (2.12.0-1) ... 151s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-2) ... 151s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 151s Setting up fonts-dejavu-core (2.37-8) ... 151s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 151s Setting up libgfortran5:amd64 (15-20250213-1ubuntu1) ... 151s Setting up python3-pluggy (1.5.0-1) ... 151s Setting up libwebp7:amd64 (1.5.0-0.1) ... 151s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 151s Setting up fonts-bebas-neue (3.0-2) ... 151s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu2) ... 151s Setting up libpsm2-2 (11.2.185-2.1) ... 151s Setting up openmpi-common (5.0.7-1) ... 151s Setting up librdmacm1t64:amd64 (55.0-1ubuntu1) ... 151s Setting up libopenjp2-7:amd64 (2.5.0-2ubuntu3) ... 151s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 151s Setting up python3-dateutil (2.9.0-3) ... 151s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 151s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 151s Setting up python3-lazy-loader (0.4-1) ... 151s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 151s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 151s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Setting up python3-mpmath (1.3.0-1) ... 152s Setting up python-matplotlib-data (3.8.3-3ubuntu2) ... 152s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 152s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 152s Setting up libsz2:amd64 (1.1.3-1) ... 152s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 152s Setting up python3-bmtk-examples (1.1.1+ds-3) ... 152s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 152s Setting up libfabric1:amd64 (1.17.0-3.1) ... 152s Setting up python3-sympy (1.13.3-1) ... 163s Setting up liblapack3:amd64 (3.12.1-2) ... 163s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 163s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 163s Setting up python3-pytest (8.3.4-1) ... 164s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 164s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 164s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 164s Setting up libraqm0:amd64 (0.10.2-1) ... 164s Setting up libpmix2t64:amd64 (5.0.6-3) ... 164s Setting up python3-numpy (1:2.2.3+ds-2) ... 168s Setting up libjs-sphinxdoc (8.1.3-4) ... 168s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 168s Setting up python3-lxml:amd64 (5.3.1-1) ... 168s Setting up libtiff6:amd64 (4.5.1+git230720-4ubuntu4) ... 168s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 168s Setting up python3-contourpy (1.3.1-1) ... 168s Setting up libfontconfig1:amd64 (2.15.0-2ubuntu1) ... 168s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 168s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 168s Setting up libxft2:amd64 (2.3.6-1build1) ... 168s Setting up python3-scipy (1.14.1-4ubuntu1) ... 173s Setting up python3-skimage-lib:amd64 (0.25.1-1) ... 173s Setting up python3-bmtk-doc (1.1.1+ds-3) ... 173s Setting up libtk8.6:amd64 (8.6.16-1) ... 173s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... 173s Setting up python3.12-tk (3.12.9-1) ... 173s Setting up python3-h5py-serial (3.12.1-1) ... 174s Setting up python3-tifffile (20250110-1) ... 174s Setting up python3.13-tk (3.13.2-1) ... 174s Setting up python3-pil:amd64 (11.1.0-5) ... 175s Setting up python3-pandas (2.2.3+dfsg-8) ... 183s Setting up libamdhip64-5 (5.7.1-5) ... 183s Setting up python3-h5py (3.12.1-1) ... 183s Setting up python3-imageio (2.37.0-1) ... 183s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 183s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 183s Setting up blt (2.5.3+dfsg-7build1) ... 183s Setting up python3-tk:amd64 (3.13.1-1) ... 183s Setting up python3-pil.imagetk:amd64 (11.1.0-5) ... 183s Setting up libopenmpi40:amd64 (5.0.7-1) ... 183s Setting up openmpi-bin (5.0.7-1) ... 183s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 183s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 183s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 183s Setting up mpi-default-bin (1.18) ... 184s Setting up python3-mpi4py (4.0.1-6ubuntu1) ... 184s Setting up python3-fonttools (4.55.3-2) ... 185s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 186s Setting up python3-matplotlib (3.8.3-3ubuntu2) ... 189s Setting up python3-skimage (0.25.1-1) ... 190s Setting up python3-bmtk (1.1.1+ds-3) ... 191s Processing triggers for libc-bin (2.40-4ubuntu1) ... 191s Processing triggers for systemd (257.2-3ubuntu1) ... 191s Processing triggers for man-db (2.13.0-1) ... 193s autopkgtest [06:56:28]: test run-unit-test: [----------------------- 194s ============================= test session starts ============================== 194s platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 194s cachedir: .pytest_cache 194s rootdir: /tmp/autopkgtest.lrCGH0/autopkgtest_tmp 194s plugins: typeguard-4.4.1 197s collecting ... collected 361 items / 5 skipped 197s 197s tests/builder/auxi/test_edge_connectors.py::test_distance_connector PASSED [ 0%] 197s tests/builder/auxi/test_edge_connectors.py::test_connect_random PASSED [ 0%] 197s tests/builder/auxi/test_node_params.py::test_positions_columinar PASSED [ 0%] 197s tests/builder/auxi/test_node_params.py::test_positions_cuboid PASSED [ 1%] 197s tests/builder/auxi/test_node_params.py::test_positions_list PASSED [ 1%] 197s tests/builder/auxi/test_node_params.py::test_positions_rect_prism PASSED [ 1%] 197s tests/builder/auxi/test_node_params.py::test_positions_ellipsoid PASSED [ 1%] 197s 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tests/utils/reports/spike_trains/test_csv_adaptor.py::test_write_csv_byid[write_csv_itr-STCSVBuffer] PASSED [ 59%] 206s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader PASSED [ 60%] 206s tests/utils/reports/spike_trains/test_csv_adaptor.py::test_csv_reader_nopop PASSED [ 60%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STMPIBuffer] PASSED [ 60%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv-STCSVMPIBufferV2] PASSED [ 60%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STMPIBuffer] PASSED [ 61%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv[write_csv_itr-STCSVMPIBufferV2] PASSED [ 61%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_byid[write_csv-STMPIBuffer] PASSED [ 61%] 206s 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206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv-STCSVMPIBufferV2] PASSED [ 64%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STMPIBuffer] PASSED [ 64%] 206s tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py::test_write_csv_empty[write_csv_itr-STCSVMPIBufferV2] PASSED [ 64%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_api PASSED [ 65%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_load_spikes_file PASSED [ 65%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-None] PASSED [ 65%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups1] PASSED [ 65%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[True-node_groups2] PASSED [ 66%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-None] PASSED [ 66%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups1] PASSED [ 66%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_raster[False-node_groups2] PASSED [ 67%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-None] PASSED [ 67%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups1] PASSED [ 67%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[True-node_groups2] PASSED [ 67%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-None] PASSED [ 68%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups1] PASSED [ 68%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[False-node_groups2] PASSED [ 68%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-None] PASSED [ 68%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups1] PASSED [ 69%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates[None-node_groups2] PASSED [ 69%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[None] PASSED [ 69%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups1] PASSED [ 70%] 206s tests/utils/reports/spike_trains/test_plotting.py::test_plot_rates_boxplot[node_groups2] PASSED [ 70%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STMemoryBuffer] PASSED [ 70%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata-STCSVBuffer] PASSED [ 70%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STMemoryBuffer] PASSED [ 71%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata[write_sonata_itr-STCSVBuffer] PASSED [ 71%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STMemoryBuffer] PASSED [ 71%] 206s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata-STCSVBuffer] PASSED [ 72%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STMemoryBuffer] PASSED [ 72%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_compression[write_sonata_itr-STCSVBuffer] PASSED [ 72%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STMemoryBuffer] PASSED [ 72%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata-STCSVBuffer] PASSED [ 73%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STMemoryBuffer] PASSED [ 73%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_empty[write_sonata_itr-STCSVBuffer] PASSED [ 73%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STMemoryBuffer] PASSED [ 73%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata-STCSVBuffer] PASSED [ 74%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STMemoryBuffer] PASSED [ 74%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_append[write_sonata_itr-STCSVBuffer] PASSED [ 74%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STMemoryBuffer] PASSED [ 75%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata-STCSVBuffer] PASSED [ 75%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STMemoryBuffer] PASSED [ 75%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_bytime[write_sonata_itr-STCSVBuffer] PASSED [ 75%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STMemoryBuffer] PASSED [ 76%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata-STCSVBuffer] PASSED [ 76%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STMemoryBuffer] PASSED [ 76%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_write_sonata_byid[write_sonata_itr-STCSVBuffer] PASSED [ 77%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_sonata_reader PASSED [ 77%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_oldsonata_reader PASSED [ 77%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor.py::test_load_sonata PASSED [ 77%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STMPIBuffer] PASSED [ 78%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata-STCSVMPIBufferV2] PASSED [ 78%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STMPIBuffer] PASSED [ 78%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 78%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STMPIBuffer] PASSED [ 79%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata-STCSVMPIBufferV2] PASSED [ 79%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STMPIBuffer] PASSED [ 79%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_compression[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 80%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STMPIBuffer] PASSED [ 80%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata-STCSVMPIBufferV2] PASSED [ 80%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STMPIBuffer] PASSED [ 80%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_byid[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 81%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STMPIBuffer] PASSED [ 81%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata-STCSVMPIBufferV2] PASSED [ 81%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STMPIBuffer] PASSED [ 81%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_bytime[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 82%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STMPIBuffer] PASSED [ 82%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata-STCSVMPIBufferV2] PASSED [ 82%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STMPIBuffer] PASSED [ 83%] 207s tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py::test_write_sonata_empty[write_sonata_itr-STCSVMPIBufferV2] PASSED [ 83%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer0] PASSED [ 83%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer1] PASSED [ 83%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spike[spiketrain_buffer2] PASSED [ 84%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer0] PASSED [ 84%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer1] PASSED [ 84%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_add_spikes[spiketrain_buffer2] PASSED [ 85%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer0] PASSED [ 85%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer1] PASSED [ 85%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_to_dataframe[spiketrain_buffer2] PASSED [ 85%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer0] PASSED [ 86%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer1] PASSED [ 86%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_iterator[spiketrain_buffer2] PASSED [ 86%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer0] PASSED [ 86%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer1] PASSED [ 87%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_invalid_pop[spiketrain_buffer2] PASSED [ 87%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer0] PASSED [ 87%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer1] PASSED [ 88%] 207s tests/utils/reports/spike_trains/test_spikes_buffer.py::test_no_spikes[spiketrain_buffer2] PASSED [ 88%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st0] PASSED [ 88%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic[st1] PASSED [ 88%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st0] PASSED [ 89%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_basic_root[st1] PASSED [ 89%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st0] PASSED [ 89%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_split_ids[st1] PASSED [ 90%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st0] PASSED [ 90%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_to_dataframe[st1] PASSED [ 90%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st0] PASSED [ 90%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_iterator[st1] PASSED [ 91%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st0] PASSED [ 91%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_root_spikes[st1] PASSED [ 91%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st0] PASSED [ 91%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_root_spikesonly[st1] PASSED [ 92%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st0] PASSED [ 92%] 207s tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py::test_no_spikes[st1] PASSED [ 92%] 207s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_fixed PASSED [ 93%] 207s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_variable PASSED [ 93%] 207s tests/utils/reports/spike_trains/test_spikes_core.py::test_psg_none_seed PASSED [ 93%] 207s tests/utils/reports/spike_trains/test_spikes_core.py::test_equals PASSED [ 93%] 207s tests/utils/reports/spike_trains/test_spikes_core.py::test_subset PASSED [ 94%] 207s tests/utils/sonata/test_config.py::test_json PASSED [ 94%] 207s tests/utils/sonata/test_config.py::test_json_split PASSED [ 94%] 207s tests/utils/sonata/test_config.py::test_dict PASSED [ 95%] 207s tests/utils/sonata/test_config.py::test_build_manifest1 PASSED [ 95%] 207s tests/utils/sonata/test_config.py::test_build_manifest2 PASSED [ 95%] 207s tests/utils/sonata/test_config.py::test_build_manifest_fail1 PASSED [ 95%] 207s tests/utils/sonata/test_config.py::test_build_manifest_fail2 PASSED [ 96%] 207s tests/utils/sonata/test_config.py::test_output_dir PASSED [ 96%] 207s tests/utils/sonata/test_config.py::test_speical_vars PASSED [ 96%] 207s tests/utils/sonata/test_config.py::test_user_vars PASSED [ 96%] 207s tests/utils/sonata/test_config.py::test_node_set_file PASSED [ 97%] 207s tests/utils/sonata/test_config_validator.py::test_valid_config PASSED [ 97%] 207s tests/utils/sonata/test_config_validator.py::test_negative_tstop PASSED [ 97%] 207s tests/utils/sonata/test_config_validator.py::test_missing_nodes_file PASSED [ 98%] 207s tests/utils/sonata/test_config_validator.py::test_inputs PASSED [ 98%] 207s tests/utils/sonata/test_edge_stats.py::test_to_edges_dataframe PASSED [ 98%] 207s tests/utils/sonata/test_edge_stats.py::test_to_nodes_dataframe PASSED [ 98%] 207s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution PASSED [ 99%] 207s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution PASSED [ 99%] 207s tests/utils/sonata/test_edge_stats.py::test_nconnections_distributions PASSED [ 99%] 207s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table PASSED [100%] 207s 207s =================================== FAILURES =================================== 207s _________________ test_get_data_metrics[sus_sus-expected_val4] _________________ 207s 207s cell_subclass = 'sus_sus' 207s expected_val = {'TF15': {'N_class': 10, 'f0_exp': array([ 8.0764, 9.4097, 9.8472, 10.4931, 14.0764]), 'f0_std': array([3.3489, 2.87...rray([[6.3896, 6.3896, 6.3896, 6.3896, 6.3896]]), 'f1_exp': array([ 2.6772, 1.8792, 6.7428, 12.2499, 3.5095]), ...}} 207s 207s @pytest.mark.parametrize("cell_subclass,expected_val", 207s [ 207s ('tOFF', tOFF_expected), 207s ('tON', tON_expected), 207s ('sOFF', sOFF_expected), 207s ('sON', sON_expected), 207s ('sus_sus', sus_sus_expected), 207s ('trans_sus', trans_sus_expected) 207s ]) 207s def test_get_data_metrics(cell_subclass, expected_val): 207s > cell_metrics = get_data_metrics_for_each_subclass(cell_subclass) 207s 207s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py:89: 207s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:145: in get_data_metrics_for_each_subclass 207s return metrics.get_metrics(ctype) 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:39: in get_metrics 207s subtype_metrics = self._load_metrics(subclass_type) 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:79: in _load_metrics 207s si_exp = np.NaN * np.ones((1, 5)) 207s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 207s 207s attr = 'NaN' 207s 207s def __getattr__(attr): 207s # Warn for expired attributes 207s import warnings 207s 207s if attr == "linalg": 207s import numpy.linalg as linalg 207s return linalg 207s elif attr == "fft": 207s import numpy.fft as fft 207s return fft 207s elif attr == "dtypes": 207s import numpy.dtypes as dtypes 207s return dtypes 207s elif attr == "random": 207s import numpy.random as random 207s return random 207s elif attr == "polynomial": 207s import numpy.polynomial as polynomial 207s return polynomial 207s elif attr == "ma": 207s import numpy.ma as ma 207s return ma 207s elif attr == "ctypeslib": 207s import numpy.ctypeslib as ctypeslib 207s return ctypeslib 207s elif attr == "exceptions": 207s import numpy.exceptions as exceptions 207s return exceptions 207s elif attr == "testing": 207s import numpy.testing as testing 207s return testing 207s elif attr == "matlib": 207s import numpy.matlib as matlib 207s return matlib 207s elif attr == "f2py": 207s import numpy.f2py as f2py 207s return f2py 207s elif attr == "typing": 207s import numpy.typing as typing 207s return typing 207s elif attr == "rec": 207s import numpy.rec as rec 207s return rec 207s elif attr == "char": 207s import numpy.char as char 207s return char 207s elif attr == "array_api": 207s raise AttributeError("`numpy.array_api` is not available from " 207s "numpy 2.0 onwards", name=None) 207s elif attr == "core": 207s import numpy.core as core 207s return core 207s elif attr == "strings": 207s import numpy.strings as strings 207s return strings 207s elif attr == "distutils": 207s if 'distutils' in __numpy_submodules__: 207s import numpy.distutils as distutils 207s return distutils 207s else: 207s raise AttributeError("`numpy.distutils` is not available from " 207s "Python 3.12 onwards", name=None) 207s 207s if attr in __future_scalars__: 207s # And future warnings for those that will change, but also give 207s # the AttributeError 207s warnings.warn( 207s f"In the future `np.{attr}` will be defined as the " 207s "corresponding NumPy scalar.", FutureWarning, stacklevel=2) 207s 207s if attr in __former_attrs__: 207s raise AttributeError(__former_attrs__[attr], name=None) 207s 207s if attr in __expired_attributes__: 207s > raise AttributeError( 207s f"`np.{attr}` was removed in the NumPy 2.0 release. " 207s f"{__expired_attributes__[attr]}", 207s name=None 207s ) 207s E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. 207s 207s /usr/lib/python3/dist-packages/numpy/__init__.py:400: AttributeError 207s ________________ test_get_data_metrics[trans_sus-expected_val5] ________________ 207s 207s cell_subclass = 'trans_sus' 207s expected_val = {'TF1': {'N_class': 7, 'f0_exp': array([36. , 21.0417, 22.4167, 23.5417, 12.0417]), 'f0_std': array([[nan, nan, nan...]), 'f0_std': array([[nan, nan, nan, nan, nan]]), 'f1_exp': array([5.2451, 3.8353, 4.9944, 3.695 , 1.7501]), ...}, ...} 207s 207s @pytest.mark.parametrize("cell_subclass,expected_val", 207s [ 207s ('tOFF', tOFF_expected), 207s ('tON', tON_expected), 207s ('sOFF', sOFF_expected), 207s ('sON', sON_expected), 207s ('sus_sus', sus_sus_expected), 207s ('trans_sus', trans_sus_expected) 207s ]) 207s def test_get_data_metrics(cell_subclass, expected_val): 207s > cell_metrics = get_data_metrics_for_each_subclass(cell_subclass) 207s 207s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py:89: 207s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:145: in get_data_metrics_for_each_subclass 207s return metrics.get_metrics(ctype) 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:39: in get_metrics 207s subtype_metrics = self._load_metrics(subclass_type) 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:79: in _load_metrics 207s si_exp = np.NaN * np.ones((1, 5)) 207s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 207s 207s attr = 'NaN' 207s 207s def __getattr__(attr): 207s # Warn for expired attributes 207s import warnings 207s 207s if attr == "linalg": 207s import numpy.linalg as linalg 207s return linalg 207s elif attr == "fft": 207s import numpy.fft as fft 207s return fft 207s elif attr == "dtypes": 207s import numpy.dtypes as dtypes 207s return dtypes 207s elif attr == "random": 207s import numpy.random as random 207s return random 207s elif attr == "polynomial": 207s import numpy.polynomial as polynomial 207s return polynomial 207s elif attr == "ma": 207s import numpy.ma as ma 207s return ma 207s elif attr == "ctypeslib": 207s import numpy.ctypeslib as ctypeslib 207s return ctypeslib 207s elif attr == "exceptions": 207s import numpy.exceptions as exceptions 207s return exceptions 207s elif attr == "testing": 207s import numpy.testing as testing 207s return testing 207s elif attr == "matlib": 207s import numpy.matlib as matlib 207s return matlib 207s elif attr == "f2py": 207s import numpy.f2py as f2py 207s return f2py 207s elif attr == "typing": 207s import numpy.typing as typing 207s return typing 207s elif attr == "rec": 207s import numpy.rec as rec 207s return rec 207s elif attr == "char": 207s import numpy.char as char 207s return char 207s elif attr == "array_api": 207s raise AttributeError("`numpy.array_api` is not available from " 207s "numpy 2.0 onwards", name=None) 207s elif attr == "core": 207s import numpy.core as core 207s return core 207s elif attr == "strings": 207s import numpy.strings as strings 207s return strings 207s elif attr == "distutils": 207s if 'distutils' in __numpy_submodules__: 207s import numpy.distutils as distutils 207s return distutils 207s else: 207s raise AttributeError("`numpy.distutils` is not available from " 207s "Python 3.12 onwards", name=None) 207s 207s if attr in __future_scalars__: 207s # And future warnings for those that will change, but also give 207s # the AttributeError 207s warnings.warn( 207s f"In the future `np.{attr}` will be defined as the " 207s "corresponding NumPy scalar.", FutureWarning, stacklevel=2) 207s 207s if attr in __former_attrs__: 207s raise AttributeError(__former_attrs__[attr], name=None) 207s 207s if attr in __expired_attributes__: 207s > raise AttributeError( 207s f"`np.{attr}` was removed in the NumPy 2.0 release. " 207s f"{__expired_attributes__[attr]}", 207s name=None 207s ) 207s E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. 207s 207s /usr/lib/python3/dist-packages/numpy/__init__.py:400: AttributeError 207s =============================== warnings summary =============================== 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead. 207s i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill') 207s 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. 207s The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy. 207s 207s For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object. 207s 207s 207s i2r_table_df['range_end'].fillna(0, inplace=True) 207s 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1] 207s /usr/lib/python3/dist-packages/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0! 207s You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy. 207s A typical example is when you are setting values in a column of a DataFrame, like: 207s 207s df["col"][row_indexer] = value 207s 207s Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`. 207s 207s See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy 207s 207s i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask] 207s 207s tests/simulator/core/test_simulation_config_validator.py::test_validate_network 207s /usr/lib/python3/dist-packages/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library. 207s class SimulationConfigValidator(Draft4Validator): 207s 207s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 207s tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 207s /usr/lib/python3/dist-packages/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError 207s exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1) 207s 207s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 207s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 207s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 207s tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution 207s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 207s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 207s tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution 207s /usr/lib/python3/dist-packages/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 207s edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val) 207s 207s tests/utils/sonata/test_edge_stats.py::test_edge_stats_table 207s /usr/lib/python3/dist-packages/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` 207s edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1) 207s 207s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 207s =========================== short test summary info ============================ 207s FAILED tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4] 207s FAILED tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5] 207s =========== 2 failed, 309 passed, 55 skipped, 29 warnings in 13.31s ============ 208s autopkgtest [06:56:43]: test run-unit-test: -----------------------] 209s autopkgtest [06:56:44]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 209s run-unit-test FAIL non-zero exit status 1 209s autopkgtest [06:56:44]: @@@@@@@@@@@@@@@@@@@@ summary 209s run-unit-test FAIL non-zero exit status 1 228s nova [W] Skipping flock for amd64 228s Creating nova instance adt-plucky-amd64-bmtk-20250221-065315-juju-7f2275-prod-proposed-migration-environment-15-4e87e6ff-5b13-491c-a7a4-0663e1eec14a from image adt/ubuntu-plucky-amd64-server-20250221.img (UUID f8adf81d-a4e1-422a-a97d-49135c3a99c7)... 228s nova [W] Timed out waiting for 0ab7bd84-7b2d-43a4-8390-2014b1aa2302 to get deleted.