0s autopkgtest [10:44:58]: starting date and time: 2024-12-02 10:44:58+0000 0s autopkgtest [10:44:58]: git checkout: be626eda Fix armhf LXD image generation for plucky 0s autopkgtest [10:44:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bprzpzva/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:openmpi --apt-upgrade bitshuffle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.11.0-8ubuntu3 openmpi/5.0.6-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-22.secgroup --name adt-plucky-amd64-bitshuffle-20241202-104458-juju-7f2275-prod-proposed-migration-environment-2-9b800cf0-8e2c-4f0f-9c7e-aade043c70f4 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 648s autopkgtest [10:55:46]: testbed dpkg architecture: amd64 649s autopkgtest [10:55:47]: testbed apt version: 2.9.14ubuntu1 649s autopkgtest [10:55:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 649s autopkgtest [10:55:47]: testbed release detected to be: None 650s autopkgtest [10:55:48]: updating testbed package index (apt update) 650s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 650s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 650s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 651s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 651s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 651s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.4 kB] 651s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [906 kB] 651s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.6 kB] 651s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [139 kB] 651s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [94.1 kB] 651s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.6 kB] 651s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2572 B] 651s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [831 kB] 651s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [325 kB] 651s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [22.7 kB] 651s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [6924 B] 651s Fetched 2546 kB in 1s (2715 kB/s) 652s Reading package lists... 653s Reading package lists... 653s Building dependency tree... 653s Reading state information... 653s Calculating upgrade... 653s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 653s Reading package lists... 654s Building dependency tree... 654s Reading state information... 654s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 654s autopkgtest [10:55:52]: upgrading testbed (apt dist-upgrade and autopurge) 654s Reading package lists... 655s Building dependency tree... 655s Reading state information... 655s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 655s Starting 2 pkgProblemResolver with broken count: 0 655s Done 656s Entering ResolveByKeep 657s 657s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 657s Reading package lists... 658s Building dependency tree... 658s Reading state information... 658s Starting pkgProblemResolver with broken count: 0 658s Starting 2 pkgProblemResolver with broken count: 0 658s Done 659s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 661s autopkgtest [10:55:59]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 661s autopkgtest [10:55:59]: @@@@@@@@@@@@@@@@@@@@ apt-source bitshuffle 663s Get:1 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (dsc) [2640 B] 663s Get:2 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (tar) [197 kB] 663s Get:3 http://ftpmaster.internal/ubuntu plucky/universe bitshuffle 0.5.2-1 (diff) [7612 B] 663s gpgv: Signature made Tue Nov 19 11:16:33 2024 UTC 663s gpgv: using RSA key D9B453B799B8830D945E6A0A5BF54E5E12B900BB 663s gpgv: issuer "picca@debian.org" 663s gpgv: Can't check signature: No public key 663s dpkg-source: warning: cannot verify inline signature for ./bitshuffle_0.5.2-1.dsc: no acceptable signature found 663s autopkgtest [10:56:01]: testing package bitshuffle version 0.5.2-1 664s autopkgtest [10:56:02]: build not needed 664s autopkgtest [10:56:02]: test command1: preparing testbed 664s Reading package lists... 665s Building dependency tree... 665s Reading state information... 665s Starting pkgProblemResolver with broken count: 0 665s Starting 2 pkgProblemResolver with broken count: 0 665s Done 665s The following NEW packages will be installed: 665s bitshuffle libaec0 libamd-comgr2 libamdhip64-5 libblas3 665s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libhdf5-103-1t64 665s libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 libhsa-runtime64-1 libhsakmt1 665s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 665s liblzf1 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 665s libpsm-infinipath1 libpsm2-2 librdmacm1t64 libsz2 libucx0 libxnvctrl0 665s ocl-icd-libopencl1 python3-h5py python3-h5py-serial python3-numpy 665s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 665s Need to get 70.5 MB of archives. 665s After this operation, 302 MB of additional disk space will be used. 665s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 666s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 666s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 666s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 666s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 666s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 666s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 666s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 666s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 666s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-8ubuntu3 [1689 kB] 666s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-8ubuntu3 [7982 B] 666s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 666s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 666s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 666s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 666s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 666s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 666s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 666s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 666s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 666s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 666s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 666s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 666s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.4-1 [723 kB] 666s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 667s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 668s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 668s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 668s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 668s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 668s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 668s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 668s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 668s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1337 kB] 668s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 bitshuffle amd64 0.5.2-1 [207 kB] 669s Fetched 70.5 MB in 3s (23.4 MB/s) 669s Selecting previously unselected package libblas3:amd64. 669s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 669s Preparing to unpack .../00-libblas3_3.12.0-4_amd64.deb ... 669s Unpacking libblas3:amd64 (3.12.0-4) ... 669s Selecting previously unselected package libgfortran5:amd64. 669s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 669s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 669s Selecting previously unselected package liblapack3:amd64. 669s Preparing to unpack .../02-liblapack3_3.12.0-4_amd64.deb ... 669s Unpacking liblapack3:amd64 (3.12.0-4) ... 669s Selecting previously unselected package python3-numpy. 669s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 669s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 669s Selecting previously unselected package libaec0:amd64. 669s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 669s Unpacking libaec0:amd64 (1.1.3-1) ... 669s Selecting previously unselected package libsz2:amd64. 669s Preparing to unpack .../05-libsz2_1.1.3-1_amd64.deb ... 669s Unpacking libsz2:amd64 (1.1.3-1) ... 669s Selecting previously unselected package libhdf5-103-1t64:amd64. 669s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 669s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 669s Selecting previously unselected package libhdf5-hl-100t64:amd64. 669s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 669s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 669s Selecting previously unselected package liblzf1:amd64. 669s Preparing to unpack .../08-liblzf1_3.6-4_amd64.deb ... 669s Unpacking liblzf1:amd64 (3.6-4) ... 669s Selecting previously unselected package python3-h5py-serial. 669s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu3_amd64.deb ... 669s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 669s Selecting previously unselected package python3-h5py. 669s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu3_all.deb ... 669s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 670s Selecting previously unselected package libgomp1:amd64. 670s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 670s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 670s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 670s Preparing to unpack .../12-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 670s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 670s Selecting previously unselected package libpsm-infinipath1. 670s Preparing to unpack .../13-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 670s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 670s Selecting previously unselected package libpsm2-2. 670s Preparing to unpack .../14-libpsm2-2_11.2.185-2.1_amd64.deb ... 670s Unpacking libpsm2-2 (11.2.185-2.1) ... 670s Selecting previously unselected package librdmacm1t64:amd64. 670s Preparing to unpack .../15-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 670s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 670s Selecting previously unselected package libfabric1:amd64. 670s Preparing to unpack .../16-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 670s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 670s Selecting previously unselected package libhwloc15:amd64. 670s Preparing to unpack .../17-libhwloc15_2.11.2-1_amd64.deb ... 670s Unpacking libhwloc15:amd64 (2.11.2-1) ... 670s Selecting previously unselected package libmunge2:amd64. 670s Preparing to unpack .../18-libmunge2_0.5.15-4build1_amd64.deb ... 670s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 670s Selecting previously unselected package libpciaccess0:amd64. 670s Preparing to unpack .../19-libpciaccess0_0.17-3build1_amd64.deb ... 670s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 670s Selecting previously unselected package libxnvctrl0:amd64. 670s Preparing to unpack .../20-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 670s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 670s Selecting previously unselected package ocl-icd-libopencl1:amd64. 670s Preparing to unpack .../21-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 670s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 670s Selecting previously unselected package libhwloc-plugins:amd64. 670s Preparing to unpack .../22-libhwloc-plugins_2.11.2-1_amd64.deb ... 670s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 670s Selecting previously unselected package libpmix2t64:amd64. 670s Preparing to unpack .../23-libpmix2t64_5.0.4-1_amd64.deb ... 670s Unpacking libpmix2t64:amd64 (5.0.4-1) ... 670s Selecting previously unselected package libllvm17t64:amd64. 670s Preparing to unpack .../24-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 670s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 670s Selecting previously unselected package libamd-comgr2:amd64. 670s Preparing to unpack .../25-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 670s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 671s Selecting previously unselected package libhsakmt1:amd64. 671s Preparing to unpack .../26-libhsakmt1_5.7.0-1build1_amd64.deb ... 671s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 671s Selecting previously unselected package libhsa-runtime64-1. 671s Preparing to unpack .../27-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 671s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 671s Selecting previously unselected package libamdhip64-5. 671s Preparing to unpack .../28-libamdhip64-5_5.7.1-5_amd64.deb ... 671s Unpacking libamdhip64-5 (5.7.1-5) ... 671s Selecting previously unselected package libibumad3:amd64. 671s Preparing to unpack .../29-libibumad3_52.0-2ubuntu1_amd64.deb ... 671s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 671s Selecting previously unselected package libibmad5:amd64. 671s Preparing to unpack .../30-libibmad5_52.0-2ubuntu1_amd64.deb ... 671s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 671s Selecting previously unselected package libucx0:amd64. 671s Preparing to unpack .../31-libucx0_1.17.0+ds-3build1_amd64.deb ... 671s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 671s Selecting previously unselected package libopenmpi3t64:amd64. 671s Preparing to unpack .../32-libopenmpi3t64_5.0.5-6_amd64.deb ... 671s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 671s Selecting previously unselected package libhdf5-openmpi-103-1t64:amd64. 671s Preparing to unpack .../33-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 671s Unpacking libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 671s Selecting previously unselected package bitshuffle. 671s Preparing to unpack .../34-bitshuffle_0.5.2-1_amd64.deb ... 671s Unpacking bitshuffle (0.5.2-1) ... 671s Setting up libpciaccess0:amd64 (0.17-3build1) ... 671s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 671s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 671s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 671s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 671s Setting up libaec0:amd64 (1.1.3-1) ... 671s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 671s Setting up libblas3:amd64 (3.12.0-4) ... 671s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 671s Setting up libmunge2:amd64 (0.5.15-4build1) ... 671s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 671s Setting up liblzf1:amd64 (3.6-4) ... 671s Setting up libhwloc15:amd64 (2.11.2-1) ... 671s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 671s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 671s Setting up libpsm2-2 (11.2.185-2.1) ... 671s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 671s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 671s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 671s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 671s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 671s Setting up libsz2:amd64 (1.1.3-1) ... 671s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 671s Setting up liblapack3:amd64 (3.12.0-4) ... 671s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 671s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 671s Setting up libpmix2t64:amd64 (5.0.4-1) ... 671s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 673s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 673s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 673s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 673s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 673s Setting up libamdhip64-5 (5.7.1-5) ... 673s Setting up python3-h5py (3.11.0-8ubuntu3) ... 673s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 673s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 673s Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 673s Setting up bitshuffle (0.5.2-1) ... 673s Processing triggers for man-db (2.13.0-1) ... 674s Processing triggers for libc-bin (2.40-1ubuntu3) ... 675s autopkgtest [10:56:13]: test command1: python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 675s autopkgtest [10:56:13]: test command1: [----------------------- 675s autopkgtest [10:56:13]: test command1: -----------------------] 676s autopkgtest [10:56:14]: test command1: - - - - - - - - - - results - - - - - - - - - - 676s command1 PASS 676s autopkgtest [10:56:14]: test command2: preparing testbed 677s Reading package lists... 677s Building dependency tree... 677s Reading state information... 677s Starting pkgProblemResolver with broken count: 0 677s Starting 2 pkgProblemResolver with broken count: 0 677s Done 677s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 678s autopkgtest [10:56:16]: test command2: H5PY_ALWAYS_USE_MPI=1 python3 -c 'import sys, h5py; sys.exit(not h5py.h5z.filter_avail(32008))' 678s autopkgtest [10:56:16]: test command2: [----------------------- 679s autopkgtest [10:56:17]: test command2: -----------------------] 679s autopkgtest [10:56:17]: test command2: - - - - - - - - - - results - - - - - - - - - - 679s command2 PASS 680s autopkgtest [10:56:18]: test testsuite: preparing testbed 741s autopkgtest [10:57:19]: testbed dpkg architecture: amd64 741s autopkgtest [10:57:19]: testbed apt version: 2.9.14ubuntu1 741s autopkgtest [10:57:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 741s autopkgtest [10:57:19]: testbed release detected to be: plucky 742s autopkgtest [10:57:20]: updating testbed package index (apt update) 742s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 743s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 743s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 743s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 743s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [16.4 kB] 743s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [906 kB] 744s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [9708 B] 744s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [78.6 kB] 744s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [94.1 kB] 744s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [139 kB] 744s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/restricted i386 Packages [2572 B] 744s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [40.6 kB] 744s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [831 kB] 744s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [325 kB] 744s Get:15 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [22.7 kB] 744s Get:16 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [6924 B] 744s Fetched 2546 kB in 2s (1248 kB/s) 745s Reading package lists... 746s Reading package lists... 746s Building dependency tree... 746s Reading state information... 747s Calculating upgrade... 747s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 747s Reading package lists... 747s Building dependency tree... 747s Reading state information... 747s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 747s autopkgtest [10:57:25]: upgrading testbed (apt dist-upgrade and autopurge) 748s Reading package lists... 748s Building dependency tree... 748s Reading state information... 748s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 748s Starting 2 pkgProblemResolver with broken count: 0 748s Done 749s Entering ResolveByKeep 750s 750s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 750s Reading package lists... 750s Building dependency tree... 750s Reading state information... 751s Starting pkgProblemResolver with broken count: 0 751s Starting 2 pkgProblemResolver with broken count: 0 751s Done 751s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 755s Reading package lists... 755s Building dependency tree... 755s Reading state information... 756s Starting pkgProblemResolver with broken count: 0 756s Starting 2 pkgProblemResolver with broken count: 0 756s Done 756s The following NEW packages will be installed: 756s bitshuffle hdf5-tools libaec0 libamd-comgr2 libamdhip64-5 libblas3 756s libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libgomp1 libhdf5-103-1t64 756s libhdf5-hl-100t64 libhdf5-openmpi-103-1t64 libhsa-runtime64-1 libhsakmt1 756s libhwloc-plugins libhwloc15 libibmad5 libibumad3 liblapack3 libllvm17t64 756s liblzf1 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64 756s libpsm-infinipath1 libpsm2-2 librdmacm1t64 libsz2 libucx0 libxnvctrl0 756s ocl-icd-libopencl1 python3-all python3-h5py python3-h5py-serial 756s python3-iniconfig python3-numpy python3-packaging python3-pluggy 756s python3-pytest 756s 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. 756s Need to get 71.2 MB of archives. 756s After this operation, 305 MB of additional disk space will be used. 756s Get:1 http://ftpmaster.internal/ubuntu plucky/main amd64 libblas3 amd64 3.12.0-4 [332 kB] 757s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libgfortran5 amd64 14.2.0-8ubuntu1 [909 kB] 757s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 liblapack3 amd64 3.12.0-4 [3177 kB] 758s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-numpy amd64 1:1.26.4+ds-11ubuntu1 [5319 kB] 760s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 760s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 760s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1280 kB] 760s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-4ubuntu3 [56.6 kB] 760s Get:9 http://ftpmaster.internal/ubuntu plucky/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 760s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py-serial amd64 3.11.0-8ubuntu3 [1689 kB] 760s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 python3-h5py all 3.11.0-8ubuntu3 [7982 B] 760s Get:12 http://ftpmaster.internal/ubuntu plucky/main amd64 libgomp1 amd64 14.2.0-8ubuntu1 [148 kB] 760s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 760s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3build1 [178 kB] 760s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 760s Get:16 http://ftpmaster.internal/ubuntu plucky/main amd64 librdmacm1t64 amd64 52.0-2ubuntu1 [70.8 kB] 760s Get:17 http://ftpmaster.internal/ubuntu plucky/universe amd64 libfabric1 amd64 1.17.0-3ubuntu1 [658 kB] 761s Get:18 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc15 amd64 2.11.2-1 [193 kB] 761s Get:19 http://ftpmaster.internal/ubuntu plucky/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 761s Get:20 http://ftpmaster.internal/ubuntu plucky/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 761s Get:21 http://ftpmaster.internal/ubuntu plucky/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 761s Get:22 http://ftpmaster.internal/ubuntu plucky/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 761s Get:23 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhwloc-plugins amd64 2.11.2-1 [16.0 kB] 761s Get:24 http://ftpmaster.internal/ubuntu plucky/universe amd64 libpmix2t64 amd64 5.0.4-1 [723 kB] 761s Get:25 http://ftpmaster.internal/ubuntu plucky/universe amd64 libllvm17t64 amd64 1:17.0.6-18 [26.0 MB] 768s Get:26 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 773s Get:27 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 773s Get:28 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 773s Get:29 http://ftpmaster.internal/ubuntu plucky/universe amd64 libamdhip64-5 amd64 5.7.1-5 [9643 kB] 777s Get:30 http://ftpmaster.internal/ubuntu plucky/main amd64 libibumad3 amd64 52.0-2ubuntu1 [29.0 kB] 777s Get:31 http://ftpmaster.internal/ubuntu plucky/main amd64 libibmad5 amd64 52.0-2ubuntu1 [42.6 kB] 777s Get:32 http://ftpmaster.internal/ubuntu plucky/universe amd64 libucx0 amd64 1.17.0+ds-3build1 [1162 kB] 777s Get:33 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 libopenmpi3t64 amd64 5.0.5-6 [2093 kB] 778s Get:34 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhdf5-openmpi-103-1t64 amd64 1.10.10+repack-4ubuntu3 [1337 kB] 778s Get:35 http://ftpmaster.internal/ubuntu plucky/universe amd64 bitshuffle amd64 0.5.2-1 [207 kB] 778s Get:36 http://ftpmaster.internal/ubuntu plucky/universe amd64 hdf5-tools amd64 1.10.10+repack-4ubuntu3 [336 kB] 778s Get:37 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-all amd64 3.12.6-0ubuntu1 [886 B] 778s Get:38 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 778s Get:39 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.2-1 [51.5 kB] 778s Get:40 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 778s Get:41 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 779s Fetched 71.2 MB in 22s (3220 kB/s) 779s Selecting previously unselected package libblas3:amd64. 779s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75952 files and directories currently installed.) 779s Preparing to unpack .../00-libblas3_3.12.0-4_amd64.deb ... 779s Unpacking libblas3:amd64 (3.12.0-4) ... 779s Selecting previously unselected package libgfortran5:amd64. 779s Preparing to unpack .../01-libgfortran5_14.2.0-8ubuntu1_amd64.deb ... 779s Unpacking libgfortran5:amd64 (14.2.0-8ubuntu1) ... 779s Selecting previously unselected package liblapack3:amd64. 779s Preparing to unpack .../02-liblapack3_3.12.0-4_amd64.deb ... 779s Unpacking liblapack3:amd64 (3.12.0-4) ... 779s Selecting previously unselected package python3-numpy. 779s Preparing to unpack .../03-python3-numpy_1%3a1.26.4+ds-11ubuntu1_amd64.deb ... 779s Unpacking python3-numpy (1:1.26.4+ds-11ubuntu1) ... 779s Selecting previously unselected package libaec0:amd64. 779s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 779s Unpacking libaec0:amd64 (1.1.3-1) ... 779s Selecting previously unselected package libsz2:amd64. 779s Preparing to unpack .../05-libsz2_1.1.3-1_amd64.deb ... 779s Unpacking libsz2:amd64 (1.1.3-1) ... 779s Selecting previously unselected package libhdf5-103-1t64:amd64. 779s Preparing to unpack .../06-libhdf5-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 779s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 779s Selecting previously unselected package libhdf5-hl-100t64:amd64. 779s Preparing to unpack .../07-libhdf5-hl-100t64_1.10.10+repack-4ubuntu3_amd64.deb ... 779s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 779s Selecting previously unselected package liblzf1:amd64. 779s Preparing to unpack .../08-liblzf1_3.6-4_amd64.deb ... 779s Unpacking liblzf1:amd64 (3.6-4) ... 779s Selecting previously unselected package python3-h5py-serial. 779s Preparing to unpack .../09-python3-h5py-serial_3.11.0-8ubuntu3_amd64.deb ... 779s Unpacking python3-h5py-serial (3.11.0-8ubuntu3) ... 779s Selecting previously unselected package python3-h5py. 779s Preparing to unpack .../10-python3-h5py_3.11.0-8ubuntu3_all.deb ... 779s Unpacking python3-h5py (3.11.0-8ubuntu3) ... 779s Selecting previously unselected package libgomp1:amd64. 779s Preparing to unpack .../11-libgomp1_14.2.0-8ubuntu1_amd64.deb ... 779s Unpacking libgomp1:amd64 (14.2.0-8ubuntu1) ... 779s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 779s Preparing to unpack .../12-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 779s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 779s Selecting previously unselected package libpsm-infinipath1. 779s Preparing to unpack .../13-libpsm-infinipath1_3.3+20.604758e7-6.3build1_amd64.deb ... 779s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 779s Selecting previously unselected package libpsm2-2. 779s Preparing to unpack .../14-libpsm2-2_11.2.185-2.1_amd64.deb ... 779s Unpacking libpsm2-2 (11.2.185-2.1) ... 779s Selecting previously unselected package librdmacm1t64:amd64. 779s Preparing to unpack .../15-librdmacm1t64_52.0-2ubuntu1_amd64.deb ... 779s Unpacking librdmacm1t64:amd64 (52.0-2ubuntu1) ... 779s Selecting previously unselected package libfabric1:amd64. 779s Preparing to unpack .../16-libfabric1_1.17.0-3ubuntu1_amd64.deb ... 779s Unpacking libfabric1:amd64 (1.17.0-3ubuntu1) ... 780s Selecting previously unselected package libhwloc15:amd64. 780s Preparing to unpack .../17-libhwloc15_2.11.2-1_amd64.deb ... 780s Unpacking libhwloc15:amd64 (2.11.2-1) ... 780s Selecting previously unselected package libmunge2:amd64. 780s Preparing to unpack .../18-libmunge2_0.5.15-4build1_amd64.deb ... 780s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 780s Selecting previously unselected package libpciaccess0:amd64. 780s Preparing to unpack .../19-libpciaccess0_0.17-3build1_amd64.deb ... 780s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 780s Selecting previously unselected package libxnvctrl0:amd64. 780s Preparing to unpack .../20-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 780s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 780s Selecting previously unselected package ocl-icd-libopencl1:amd64. 780s Preparing to unpack .../21-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 780s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 780s Selecting previously unselected package libhwloc-plugins:amd64. 780s Preparing to unpack .../22-libhwloc-plugins_2.11.2-1_amd64.deb ... 780s Unpacking libhwloc-plugins:amd64 (2.11.2-1) ... 780s Selecting previously unselected package libpmix2t64:amd64. 780s Preparing to unpack .../23-libpmix2t64_5.0.4-1_amd64.deb ... 780s Unpacking libpmix2t64:amd64 (5.0.4-1) ... 780s Selecting previously unselected package libllvm17t64:amd64. 780s Preparing to unpack .../24-libllvm17t64_1%3a17.0.6-18_amd64.deb ... 780s Unpacking libllvm17t64:amd64 (1:17.0.6-18) ... 780s Selecting previously unselected package libamd-comgr2:amd64. 780s Preparing to unpack .../25-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 780s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 781s Selecting previously unselected package libhsakmt1:amd64. 781s Preparing to unpack .../26-libhsakmt1_5.7.0-1build1_amd64.deb ... 781s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 781s Selecting previously unselected package libhsa-runtime64-1. 781s Preparing to unpack .../27-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 781s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 781s Selecting previously unselected package libamdhip64-5. 781s Preparing to unpack .../28-libamdhip64-5_5.7.1-5_amd64.deb ... 781s Unpacking libamdhip64-5 (5.7.1-5) ... 781s Selecting previously unselected package libibumad3:amd64. 781s Preparing to unpack .../29-libibumad3_52.0-2ubuntu1_amd64.deb ... 781s Unpacking libibumad3:amd64 (52.0-2ubuntu1) ... 781s Selecting previously unselected package libibmad5:amd64. 781s Preparing to unpack .../30-libibmad5_52.0-2ubuntu1_amd64.deb ... 781s Unpacking libibmad5:amd64 (52.0-2ubuntu1) ... 781s Selecting previously unselected package libucx0:amd64. 781s Preparing to unpack .../31-libucx0_1.17.0+ds-3build1_amd64.deb ... 781s Unpacking libucx0:amd64 (1.17.0+ds-3build1) ... 781s Selecting previously unselected package libopenmpi3t64:amd64. 781s Preparing to unpack .../32-libopenmpi3t64_5.0.5-6_amd64.deb ... 781s Unpacking libopenmpi3t64:amd64 (5.0.5-6) ... 781s Selecting previously unselected package libhdf5-openmpi-103-1t64:amd64. 781s Preparing to unpack .../33-libhdf5-openmpi-103-1t64_1.10.10+repack-4ubuntu3_amd64.deb ... 781s Unpacking libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 781s Selecting previously unselected package bitshuffle. 781s Preparing to unpack .../34-bitshuffle_0.5.2-1_amd64.deb ... 781s Unpacking bitshuffle (0.5.2-1) ... 781s Selecting previously unselected package hdf5-tools. 781s Preparing to unpack .../35-hdf5-tools_1.10.10+repack-4ubuntu3_amd64.deb ... 781s Unpacking hdf5-tools (1.10.10+repack-4ubuntu3) ... 781s Selecting previously unselected package python3-all. 781s Preparing to unpack .../36-python3-all_3.12.6-0ubuntu1_amd64.deb ... 781s Unpacking python3-all (3.12.6-0ubuntu1) ... 781s Selecting previously unselected package python3-iniconfig. 781s Preparing to unpack .../37-python3-iniconfig_1.1.1-2_all.deb ... 781s Unpacking python3-iniconfig (1.1.1-2) ... 781s Selecting previously unselected package python3-packaging. 781s Preparing to unpack .../38-python3-packaging_24.2-1_all.deb ... 781s Unpacking python3-packaging (24.2-1) ... 781s Selecting previously unselected package python3-pluggy. 781s Preparing to unpack .../39-python3-pluggy_1.5.0-1_all.deb ... 781s Unpacking python3-pluggy (1.5.0-1) ... 781s Selecting previously unselected package python3-pytest. 781s Preparing to unpack .../40-python3-pytest_8.3.3-1_all.deb ... 781s Unpacking python3-pytest (8.3.3-1) ... 781s Setting up python3-iniconfig (1.1.1-2) ... 781s Setting up libpciaccess0:amd64 (0.17-3build1) ... 781s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 781s Setting up libibumad3:amd64 (52.0-2ubuntu1) ... 781s Setting up python3-all (3.12.6-0ubuntu1) ... 781s Setting up libibmad5:amd64 (52.0-2ubuntu1) ... 781s Setting up libgomp1:amd64 (14.2.0-8ubuntu1) ... 781s Setting up libaec0:amd64 (1.1.3-1) ... 781s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 781s Setting up libblas3:amd64 (3.12.0-4) ... 781s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 781s Setting up python3-packaging (24.2-1) ... 781s Setting up libmunge2:amd64 (0.5.15-4build1) ... 781s Setting up libllvm17t64:amd64 (1:17.0.6-18) ... 781s Setting up liblzf1:amd64 (3.6-4) ... 781s Setting up libhwloc15:amd64 (2.11.2-1) ... 781s Setting up libgfortran5:amd64 (14.2.0-8ubuntu1) ... 781s Setting up python3-pluggy (1.5.0-1) ... 782s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 782s Setting up libpsm2-2 (11.2.185-2.1) ... 782s Setting up librdmacm1t64:amd64 (52.0-2ubuntu1) ... 782s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 782s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3build1) ... 782s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 782s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 782s Setting up libsz2:amd64 (1.1.3-1) ... 782s Setting up libfabric1:amd64 (1.17.0-3ubuntu1) ... 782s Setting up liblapack3:amd64 (3.12.0-4) ... 782s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 782s Setting up python3-pytest (8.3.3-1) ... 782s Setting up libhwloc-plugins:amd64 (2.11.2-1) ... 782s Setting up libpmix2t64:amd64 (5.0.4-1) ... 782s Setting up python3-numpy (1:1.26.4+ds-11ubuntu1) ... 784s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 784s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 784s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-4ubuntu3) ... 784s Setting up python3-h5py-serial (3.11.0-8ubuntu3) ... 784s Setting up hdf5-tools (1.10.10+repack-4ubuntu3) ... 784s Setting up libamdhip64-5 (5.7.1-5) ... 784s Setting up python3-h5py (3.11.0-8ubuntu3) ... 784s Setting up libucx0:amd64 (1.17.0+ds-3build1) ... 784s Setting up libopenmpi3t64:amd64 (5.0.5-6) ... 784s Setting up libhdf5-openmpi-103-1t64:amd64 (1.10.10+repack-4ubuntu3) ... 784s Setting up bitshuffle (0.5.2-1) ... 784s Processing triggers for man-db (2.13.0-1) ... 785s Processing triggers for libc-bin (2.40-1ubuntu3) ... 787s autopkgtest [10:58:05]: test testsuite: [----------------------- 787s 'tests' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests' 787s 'tests/test_ext.py' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/test_ext.py' 787s 'tests/test_regression.py' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/test_regression.py' 787s 'tests/make_regression_tdata.py' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/make_regression_tdata.py' 787s 'tests/test_h5plugin.py' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/test_h5plugin.py' 787s 'tests/data' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/data' 787s 'tests/data/regression_0.4.0.h5' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/data/regression_0.4.0.h5' 787s 'tests/data/regression_0.1.3.h5' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/data/regression_0.1.3.h5' 787s 'tests/test_h5filter.py' -> '/tmp/autopkgtest.vbPn8A/autopkgtest_tmp/tests/test_h5filter.py' 787s [*] testing on python3.12: 787s ============================= test session starts ============================== 787s platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12 787s cachedir: .pytest_cache 787s rootdir: /tmp/autopkgtest.vbPn8A/autopkgtest_tmp 787s plugins: typeguard-4.4.1 787s collecting ... collected 80 items 787s 787s tests/test_ext.py::TestProfile::test_00_copy PASSED [ 1%] 787s tests/test_ext.py::TestProfile::test_01a_trans_byte_elem_scal_16 PASSED [ 2%] 787s tests/test_ext.py::TestProfile::test_01b_trans_byte_elem_scal_32 PASSED [ 3%] 787s tests/test_ext.py::TestProfile::test_01c_trans_byte_elem_scal_64 PASSED [ 5%] 787s tests/test_ext.py::TestProfile::test_01d_trans_byte_elem_16 PASSED [ 6%] 787s tests/test_ext.py::TestProfile::test_01e_trans_byte_elem_32 PASSED [ 7%] 787s tests/test_ext.py::TestProfile::test_01f_trans_byte_elem_64 PASSED [ 8%] 787s tests/test_ext.py::TestProfile::test_01g_trans_byte_elem_128 PASSED [ 10%] 787s tests/test_ext.py::TestProfile::test_01h_trans_byte_elem_96 PASSED [ 11%] 787s tests/test_ext.py::TestProfile::test_01i_trans_byte_elem_80 PASSED [ 12%] 787s tests/test_ext.py::TestProfile::test_03a_trans_bit_byte PASSED [ 13%] 787s tests/test_ext.py::TestProfile::test_03d_trans_bit_byte_SSE PASSED [ 15%] 787s tests/test_ext.py::TestProfile::test_03f_trans_bit_byte_AVX PASSED [ 16%] 787s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX512_32 PASSED [ 17%] 787s tests/test_ext.py::TestProfile::test_03g_trans_bit_byte_AVX_32 PASSED [ 18%] 787s tests/test_ext.py::TestProfile::test_03h_trans_bit_byte_AVX512 PASSED [ 20%] 787s tests/test_ext.py::TestProfile::test_04a_trans_bit_elem_AVX PASSED [ 21%] 787s tests/test_ext.py::TestProfile::test_04b_trans_bit_elem_AVX_128 PASSED [ 22%] 787s tests/test_ext.py::TestProfile::test_04c_trans_bit_elem_AVX_32 PASSED [ 23%] 787s tests/test_ext.py::TestProfile::test_04d_trans_bit_elem_AVX_16 PASSED [ 25%] 787s tests/test_ext.py::TestProfile::test_04e_trans_bit_elem_64 PASSED [ 26%] 787s tests/test_ext.py::TestProfile::test_04f_trans_bit_elem_SSE_32 PASSED [ 27%] 787s tests/test_ext.py::TestProfile::test_04g_trans_bit_elem_SSE_64 PASSED [ 28%] 787s tests/test_ext.py::TestProfile::test_04h_trans_bit_elem_AVX512 PASSED [ 30%] 787s tests/test_ext.py::TestProfile::test_04i_trans_bit_elem_AVX512 PASSED [ 31%] 787s tests/test_ext.py::TestProfile::test_04j_trans_bit_elem_AVX512_32 PASSED [ 32%] 787s tests/test_ext.py::TestProfile::test_04k_trans_bit_elem_AVX512_16 PASSED [ 33%] 787s tests/test_ext.py::TestProfile::test_06a_untrans_bit_elem_16 PASSED [ 35%] 787s tests/test_ext.py::TestProfile::test_06b_untrans_bit_elem_128 PASSED [ 36%] 787s tests/test_ext.py::TestProfile::test_06c_untrans_bit_elem_32 PASSED [ 37%] 787s tests/test_ext.py::TestProfile::test_06d_untrans_bit_elem_32 PASSED [ 38%] 787s tests/test_ext.py::TestProfile::test_06e_untrans_bit_elem_64 PASSED [ 40%] 787s tests/test_ext.py::TestProfile::test_06f_untrans_bit_elem_64 PASSED [ 41%] 787s tests/test_ext.py::TestProfile::test_06g_untrans_bit_elem_64 PASSED [ 42%] 787s tests/test_ext.py::TestProfile::test_06h_untrans_bit_elem_32 PASSED [ 43%] 787s tests/test_ext.py::TestProfile::test_06i_untrans_bit_elem_64 PASSED [ 45%] 787s tests/test_ext.py::TestProfile::test_07a_trans_byte_bitrow_64 PASSED [ 46%] 787s tests/test_ext.py::TestProfile::test_07b_trans_byte_bitrow_SSE_64 PASSED [ 47%] 787s tests/test_ext.py::TestProfile::test_07c_trans_byte_bitrow_AVX_64 PASSED [ 48%] 787s tests/test_ext.py::TestProfile::test_08a_shuffle_bit_eight_scal_64 PASSED [ 50%] 787s tests/test_ext.py::TestProfile::test_08b_shuffle_bit_eight_SSE_64 PASSED [ 51%] 787s tests/test_ext.py::TestProfile::test_08c_shuffle_bit_eight_AVX_32 PASSED [ 52%] 787s tests/test_ext.py::TestProfile::test_08d_shuffle_bit_eight_AVX_64 PASSED [ 53%] 787s tests/test_ext.py::TestProfile::test_08e_shuffle_bit_eight_AVX_16 PASSED [ 55%] 787s tests/test_ext.py::TestProfile::test_08f_shuffle_bit_eight_AVX_128 PASSED [ 56%] 787s tests/test_ext.py::TestProfile::test_08g_shuffle_bit_eight_AVX512_32 PASSED [ 57%] 787s tests/test_ext.py::TestProfile::test_08h_shuffle_bit_eight_AVX512_64 PASSED [ 58%] 787s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_128 PASSED [ 60%] 787s tests/test_ext.py::TestProfile::test_08i_shuffle_bit_eight_AVX512_16 PASSED [ 61%] 787s tests/test_ext.py::TestProfile::test_09a_trans_bit_elem_scal_64 PASSED [ 62%] 787s tests/test_ext.py::TestProfile::test_09b_trans_bit_elem_SSE_64 PASSED [ 63%] 787s tests/test_ext.py::TestProfile::test_09c_trans_bit_elem_AVX_64 PASSED [ 65%] 787s tests/test_ext.py::TestProfile::test_09d_untrans_bit_elem_scal_64 PASSED [ 66%] 787s tests/test_ext.py::TestProfile::test_09e_untrans_bit_elem_SSE_64 PASSED [ 67%] 787s tests/test_ext.py::TestProfile::test_09f_untrans_bit_elem_AVX_64 PASSED [ 68%] 787s tests/test_ext.py::TestProfile::test_09g_untrans_bit_elem_AVX_64 PASSED [ 70%] 787s tests/test_ext.py::TestProfile::test_10a_bitshuffle_64 PASSED [ 71%] 787s tests/test_ext.py::TestProfile::test_10b_bitunshuffle_64 PASSED [ 72%] 787s tests/test_ext.py::TestProfile::test_10c_compress_64 PASSED [ 73%] 787s tests/test_ext.py::TestProfile::test_10c_compress_z64 PASSED [ 75%] 787s tests/test_ext.py::TestProfile::test_10d_decompress_64 PASSED [ 76%] 787s tests/test_ext.py::TestProfile::test_10d_decompress_z64 PASSED [ 77%] 787s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX PASSED [ 78%] 787s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_AVX512 PASSED [ 80%] 787s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_SSE PASSED [ 81%] 788s tests/test_ext.py::TestOddLengths::test_trans_bit_elem_scal PASSED [ 82%] 788s tests/test_ext.py::TestOddLengths::test_trans_byte_elem_SSE PASSED [ 83%] 788s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX PASSED [ 85%] 788s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_AVX512 PASSED [ 86%] 788s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_SSE PASSED [ 87%] 788s tests/test_ext.py::TestOddLengths::test_untrans_bit_elem_scal PASSED [ 88%] 788s tests/test_ext.py::TestBitShuffleCircle::test_circle PASSED [ 90%] 788s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_compression PASSED [ 91%] 789s tests/test_ext.py::TestBitShuffleCircle::test_circle_with_zstd_compression PASSED [ 92%] 789s tests/test_h5filter.py::TestFilter::test_filter PASSED [ 93%] 789s tests/test_h5filter.py::TestFilter::test_with_block_size PASSED [ 95%] 789s tests/test_h5filter.py::TestFilter::test_with_lz4_compression PASSED [ 96%] 789s tests/test_h5filter.py::TestFilter::test_with_zstd_compression PASSED [ 97%] 789s tests/test_h5plugin.py::TestFilterPlugins::test_plugins PASSED [ 98%] 789s tests/test_regression.py::TestAll::test_regression PASSED [100%] 789s 789s ============================== 80 passed in 2.20s ============================== 790s autopkgtest [10:58:08]: test testsuite: -----------------------] 790s testsuite PASS 790s autopkgtest [10:58:08]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 791s autopkgtest [10:58:09]: @@@@@@@@@@@@@@@@@@@@ summary 791s command1 PASS 791s command2 PASS 791s testsuite PASS 805s nova [W] Skipping flock for amd64 805s Creating nova instance adt-plucky-amd64-bitshuffle-20241202-104458-juju-7f2275-prod-proposed-migration-environment-2-9b800cf0-8e2c-4f0f-9c7e-aade043c70f4 from image adt/ubuntu-plucky-amd64-server-20241202.img (UUID e2dd381a-9f8d-4c68-9282-8ccd9f59e142)... 805s nova [W] nova quota exceeded (attempt #0) 805s nova [W] nova quota exceeded (attempt #1) 805s nova [W] Skipping flock for amd64 805s Creating nova instance adt-plucky-amd64-bitshuffle-20241202-104458-juju-7f2275-prod-proposed-migration-environment-2-9b800cf0-8e2c-4f0f-9c7e-aade043c70f4 from image adt/ubuntu-plucky-amd64-server-20241202.img (UUID e2dd381a-9f8d-4c68-9282-8ccd9f59e142)...