0s autopkgtest [08:06:32]: starting date and time: 2024-11-13 08:06:32+0000 0s autopkgtest [08:06:32]: git checkout: 0acbae0a WIP show VirtSubproc stderr in real-time 0s autopkgtest [08:06:32]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._5ih6vyr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade atropos --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.7-1 python3-stdlib-extensions/3.12.7-1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-39.secgroup --name adt-plucky-amd64-atropos-20241113-080631-juju-7f2275-prod-proposed-migration-environment-2-c8cf69a6-f3d5-48f2-8d54-d2686250eb75 --image adt/ubuntu-plucky-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 133s autopkgtest [08:08:45]: testbed dpkg architecture: amd64 133s autopkgtest [08:08:45]: testbed apt version: 2.9.8 133s autopkgtest [08:08:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 133s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [848 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [76.4 kB] 133s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 Packages [111 kB] 133s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main i386 Packages [65.2 kB] 133s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/restricted amd64 Packages [32.6 kB] 133s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/universe i386 Packages [255 kB] 133s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/universe amd64 Packages [637 kB] 133s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse i386 Packages [13.0 kB] 133s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse amd64 Packages [37.7 kB] 133s Fetched 2171 kB in 0s (5800 kB/s) 134s Reading package lists... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s Calculating upgrade... 136s The following NEW packages will be installed: 136s python3.13-gdbm 136s The following packages will be upgraded: 136s libgpgme11t64 libpython3-stdlib python3 python3-gdbm python3-minimal 136s 5 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 253 kB of archives. 136s After this operation, 147 kB of additional disk space will be used. 136s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-minimal amd64 3.12.7-1 [27.4 kB] 136s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3 amd64 3.12.7-1 [24.0 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 libpython3-stdlib amd64 3.12.7-1 [10.0 kB] 136s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-gdbm amd64 3.13.0-2 [31.3 kB] 136s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-gdbm amd64 3.12.7-1 [8642 B] 136s Get:6 http://ftpmaster.internal/ubuntu plucky/main amd64 libgpgme11t64 amd64 1.23.2-5ubuntu4 [152 kB] 136s Fetched 253 kB in 0s (6271 kB/s) 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 137s Preparing to unpack .../python3-minimal_3.12.7-1_amd64.deb ... 137s Unpacking python3-minimal (3.12.7-1) over (3.12.6-0ubuntu1) ... 137s Setting up python3-minimal (3.12.7-1) ... 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75541 files and directories currently installed.) 137s Preparing to unpack .../python3_3.12.7-1_amd64.deb ... 137s Unpacking python3 (3.12.7-1) over (3.12.6-0ubuntu1) ... 137s Preparing to unpack .../libpython3-stdlib_3.12.7-1_amd64.deb ... 137s Unpacking libpython3-stdlib:amd64 (3.12.7-1) over (3.12.6-0ubuntu1) ... 137s Selecting previously unselected package python3.13-gdbm. 137s Preparing to unpack .../python3.13-gdbm_3.13.0-2_amd64.deb ... 137s Unpacking python3.13-gdbm (3.13.0-2) ... 137s Preparing to unpack .../python3-gdbm_3.12.7-1_amd64.deb ... 137s Unpacking python3-gdbm:amd64 (3.12.7-1) over (3.12.6-1ubuntu1) ... 137s Preparing to unpack .../libgpgme11t64_1.23.2-5ubuntu4_amd64.deb ... 137s Unpacking libgpgme11t64:amd64 (1.23.2-5ubuntu4) over (1.18.0-4.1ubuntu4) ... 137s Setting up libgpgme11t64:amd64 (1.23.2-5ubuntu4) ... 137s Setting up python3.13-gdbm (3.13.0-2) ... 137s Setting up libpython3-stdlib:amd64 (3.12.7-1) ... 137s Setting up python3 (3.12.7-1) ... 137s Setting up python3-gdbm:amd64 (3.12.7-1) ... 137s Processing triggers for man-db (2.12.1-3) ... 138s Processing triggers for libc-bin (2.40-1ubuntu3) ... 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 139s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 139s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 141s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s autopkgtest [08:08:55]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP PREEMPT_DYNAMIC Mon Sep 16 13:41:20 UTC 2024 143s autopkgtest [08:08:55]: @@@@@@@@@@@@@@@@@@@@ apt-source atropos 144s Get:1 http://ftpmaster.internal/ubuntu plucky/universe atropos 1.1.32+dfsg-2 (dsc) [2234 B] 144s Get:2 http://ftpmaster.internal/ubuntu plucky/universe atropos 1.1.32+dfsg-2 (tar) [3117 kB] 144s Get:3 http://ftpmaster.internal/ubuntu plucky/universe atropos 1.1.32+dfsg-2 (diff) [6800 B] 144s gpgv: Signature made Wed Jul 31 09:03:58 2024 UTC 144s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.32+dfsg-2.dsc: no acceptable signature found 144s autopkgtest [08:08:56]: testing package atropos version 1.1.32+dfsg-2 144s autopkgtest [08:08:56]: build not needed 144s autopkgtest [08:08:56]: test run-unit-test: preparing testbed 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 146s The following additional packages will be installed: 146s atropos libdeflate0 libhts3t64 libhtscodecs2 libpython3.13-minimal 146s libpython3.13-stdlib python3-all python3-iniconfig python3-packaging 146s python3-pluggy python3-pysam python3-pytest python3.13 python3.13-minimal 146s Suggested packages: 146s python3.13-venv python3.13-doc binfmt-support 146s The following NEW packages will be installed: 146s atropos autopkgtest-satdep libdeflate0 libhts3t64 libhtscodecs2 146s libpython3.13-minimal libpython3.13-stdlib python3-all python3-iniconfig 146s python3-packaging python3-pluggy python3-pysam python3-pytest python3.13 146s python3.13-minimal 146s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 10.6 MB/10.6 MB of archives. 146s After this operation, 61.5 MB of additional disk space will be used. 146s Get:1 /tmp/autopkgtest.ddHC6l/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 146s Get:2 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-minimal amd64 3.13.0-2 [879 kB] 146s Get:3 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13-minimal amd64 3.13.0-2 [2188 kB] 146s Get:4 http://ftpmaster.internal/ubuntu plucky/main amd64 libdeflate0 amd64 1.22-1 [64.5 kB] 146s Get:5 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhtscodecs2 amd64 1.6.1-1 [132 kB] 146s Get:6 http://ftpmaster.internal/ubuntu plucky/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB] 146s Get:7 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pysam amd64 0.22.1+ds-2 [3504 kB] 146s Get:8 http://ftpmaster.internal/ubuntu plucky/universe amd64 atropos amd64 1.1.32+dfsg-2 [226 kB] 146s Get:9 http://ftpmaster.internal/ubuntu plucky/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [2107 kB] 146s Get:10 http://ftpmaster.internal/ubuntu plucky/main amd64 python3.13 amd64 3.13.0-2 [719 kB] 146s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/main amd64 python3-all amd64 3.12.7-1 [890 B] 146s Get:12 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 146s Get:13 http://ftpmaster.internal/ubuntu plucky/main amd64 python3-packaging all 24.1-1 [41.4 kB] 146s Get:14 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 146s Get:15 http://ftpmaster.internal/ubuntu plucky/universe amd64 python3-pytest all 8.3.3-1 [251 kB] 146s Fetched 10.6 MB in 0s (32.8 MB/s) 146s Selecting previously unselected package libpython3.13-minimal:amd64. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75548 files and directories currently installed.) 146s Preparing to unpack .../00-libpython3.13-minimal_3.13.0-2_amd64.deb ... 146s Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... 146s Selecting previously unselected package python3.13-minimal. 146s Preparing to unpack .../01-python3.13-minimal_3.13.0-2_amd64.deb ... 146s Unpacking python3.13-minimal (3.13.0-2) ... 147s Selecting previously unselected package libdeflate0:amd64. 147s Preparing to unpack .../02-libdeflate0_1.22-1_amd64.deb ... 147s Unpacking libdeflate0:amd64 (1.22-1) ... 147s Selecting previously unselected package libhtscodecs2:amd64. 147s Preparing to unpack .../03-libhtscodecs2_1.6.1-1_amd64.deb ... 147s Unpacking libhtscodecs2:amd64 (1.6.1-1) ... 147s Selecting previously unselected package libhts3t64:amd64. 147s Preparing to unpack .../04-libhts3t64_1.20+ds-1_amd64.deb ... 147s Unpacking libhts3t64:amd64 (1.20+ds-1) ... 147s Selecting previously unselected package python3-pysam. 147s Preparing to unpack .../05-python3-pysam_0.22.1+ds-2_amd64.deb ... 147s Unpacking python3-pysam (0.22.1+ds-2) ... 147s Selecting previously unselected package atropos. 147s Preparing to unpack .../06-atropos_1.1.32+dfsg-2_amd64.deb ... 147s Unpacking atropos (1.1.32+dfsg-2) ... 147s Selecting previously unselected package libpython3.13-stdlib:amd64. 147s Preparing to unpack .../07-libpython3.13-stdlib_3.13.0-2_amd64.deb ... 147s Unpacking libpython3.13-stdlib:amd64 (3.13.0-2) ... 147s Selecting previously unselected package python3.13. 147s Preparing to unpack .../08-python3.13_3.13.0-2_amd64.deb ... 147s Unpacking python3.13 (3.13.0-2) ... 147s Selecting previously unselected package python3-all. 147s Preparing to unpack .../09-python3-all_3.12.7-1_amd64.deb ... 147s Unpacking python3-all (3.12.7-1) ... 147s Selecting previously unselected package python3-iniconfig. 147s Preparing to unpack .../10-python3-iniconfig_1.1.1-2_all.deb ... 147s Unpacking python3-iniconfig (1.1.1-2) ... 147s Selecting previously unselected package python3-packaging. 147s Preparing to unpack .../11-python3-packaging_24.1-1_all.deb ... 147s Unpacking python3-packaging (24.1-1) ... 147s Selecting previously unselected package python3-pluggy. 147s Preparing to unpack .../12-python3-pluggy_1.5.0-1_all.deb ... 147s Unpacking python3-pluggy (1.5.0-1) ... 147s Selecting previously unselected package python3-pytest. 147s Preparing to unpack .../13-python3-pytest_8.3.3-1_all.deb ... 147s Unpacking python3-pytest (8.3.3-1) ... 147s Selecting previously unselected package autopkgtest-satdep. 147s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 147s Unpacking autopkgtest-satdep (0) ... 147s Setting up libhtscodecs2:amd64 (1.6.1-1) ... 147s Setting up python3-iniconfig (1.1.1-2) ... 148s Setting up libdeflate0:amd64 (1.22-1) ... 148s Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... 148s Setting up python3-packaging (24.1-1) ... 148s Setting up python3-pluggy (1.5.0-1) ... 148s Setting up libhts3t64:amd64 (1.20+ds-1) ... 148s Setting up python3.13-minimal (3.13.0-2) ... 149s Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... 149s Setting up python3-pysam (0.22.1+ds-2) ... 149s Setting up python3.13 (3.13.0-2) ... 150s Setting up python3-pytest (8.3.3-1) ... 150s Setting up atropos (1.1.32+dfsg-2) ... 151s Setting up python3-all (3.12.7-1) ... 151s Setting up autopkgtest-satdep (0) ... 151s Processing triggers for systemd (256.5-2ubuntu4) ... 151s Processing triggers for man-db (2.12.1-3) ... 151s Processing triggers for libc-bin (2.40-1ubuntu3) ... 153s (Reading database ... 76890 files and directories currently installed.) 153s Removing autopkgtest-satdep (0) ... 154s autopkgtest [08:09:06]: test run-unit-test: [----------------------- 154s ============================= test session starts ============================== 154s platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13 154s cachedir: .pytest_cache 154s rootdir: /tmp/autopkgtest.ddHC6l/autopkgtest_tmp 154s plugins: typeguard-4.4.1 160s collecting ... collected 137 items / 8 errors 160s 160s ==================================== ERRORS ==================================== 160s ___________________ ERROR collecting tests/test_adapters.py ____________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_adapters.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_adapters.py:3: in 160s from atropos.adapters import ( 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s _____________________ ERROR collecting tests/test_align.py _____________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_align.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_align.py:4: in 160s from atropos.adapters import BACK 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s ___________________ ERROR collecting tests/test_commands.py ____________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_commands.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_commands.py:3: in 160s from atropos.commands.trim.multicore import OrderPreservingWriterResultHandler 160s /usr/lib/python3/dist-packages/atropos/commands/trim/__init__.py:8: in 160s from atropos.commands.base import ( 160s /usr/lib/python3/dist-packages/atropos/commands/base.py:8: in 160s from atropos.adapters import AdapterCache 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s ____________________ ERROR collecting tests/test_filters.py ____________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_filters.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_filters.py:5: in 160s from atropos.commands.trim.filters import ( 160s /usr/lib/python3/dist-packages/atropos/commands/trim/__init__.py:8: in 160s from atropos.commands.base import ( 160s /usr/lib/python3/dist-packages/atropos/commands/base.py:8: in 160s from atropos.adapters import AdapterCache 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s ___________________ ERROR collecting tests/test_modifiers.py ___________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_modifiers.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_modifiers.py:2: in 160s from atropos.adapters import * 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s ___________________ ERROR collecting tests/test_qualtrim.py ____________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_qualtrim.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_qualtrim.py:2: in 160s from atropos.commands.trim.qualtrim import nextseq_trim_index 160s /usr/lib/python3/dist-packages/atropos/commands/trim/__init__.py:8: in 160s from atropos.commands.base import ( 160s /usr/lib/python3/dist-packages/atropos/commands/base.py:8: in 160s from atropos.adapters import AdapterCache 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s _____________________ ERROR collecting tests/test_seqio.py _____________________ 160s tests/test_seqio.py:10: in 160s from atropos.io.seqio import ( 160s /usr/lib/python3/dist-packages/atropos/io/seqio.py:108: in 160s class ColorspaceSequence(Sequence): 160s E NameError: name 'Sequence' is not defined 160s _____________________ ERROR collecting tests/test_trim.py ______________________ 160s ImportError while importing test module '/tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_trim.py'. 160s Hint: make sure your test modules/packages have valid Python names. 160s Traceback: 160s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 160s return _bootstrap._gcd_import(name[level:], package, level) 160s tests/test_trim.py:2: in 160s from atropos.adapters import Adapter, ColorspaceAdapter, PREFIX, BACK 160s /usr/lib/python3/dist-packages/atropos/adapters/__init__.py:13: in 160s from atropos import align 160s /usr/lib/python3/dist-packages/atropos/align/__init__.py:6: in 160s from atropos.align._align import Aligner, MultiAligner, compare_prefixes, locate 160s E ModuleNotFoundError: No module named 'atropos.align._align' 160s =============================== warnings summary =============================== 160s tests/test_paired.py:638 160s /tmp/autopkgtest.ddHC6l/autopkgtest_tmp/tests/test_paired.py:638: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 160s @pytest.mark.timeout(10) 160s 160s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 160s =========================== short test summary info ============================ 160s ERROR tests/test_adapters.py 160s ERROR tests/test_align.py 160s ERROR tests/test_commands.py 160s ERROR tests/test_filters.py 160s ERROR tests/test_modifiers.py 160s ERROR tests/test_qualtrim.py 160s ERROR tests/test_seqio.py - NameError: name 'Sequence' is not defined 160s ERROR tests/test_trim.py 160s !!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!! 160s ========================= 1 warning, 8 errors in 5.80s ========================= 160s autopkgtest [08:09:12]: test run-unit-test: -----------------------] 161s autopkgtest [08:09:13]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 161s run-unit-test FAIL non-zero exit status 2 161s autopkgtest [08:09:13]: @@@@@@@@@@@@@@@@@@@@ summary 161s run-unit-test FAIL non-zero exit status 2 172s virt: nova [W] Skipping flock for amd64 172s virt: Creating nova instance adt-plucky-amd64-atropos-20241113-080631-juju-7f2275-prod-proposed-migration-environment-2-c8cf69a6-f3d5-48f2-8d54-d2686250eb75 from image adt/ubuntu-plucky-amd64-server-20241113.img (UUID 76b850f9-98f4-4b79-af06-fa11000b95b2)...