0s autopkgtest [16:02:53]: starting date and time: 2024-07-26 16:02:53+0000 0s autopkgtest [16:02:53]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [16:02:53]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bnm0cy05/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xgboost --apt-upgrade xgboost --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xgboost/2.1.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-8.secgroup --name adt-oracular-s390x-xgboost-20240726-160253-juju-7f2275-prod-proposed-migration-environment-2-525e3ed6-d05a-4311-b134-d4dcde805705 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 122s autopkgtest [16:04:55]: testbed dpkg architecture: s390x 122s autopkgtest [16:04:55]: testbed apt version: 2.9.6 122s autopkgtest [16:04:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 123s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 123s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 123s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4288 B] 123s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [436 kB] 123s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 123s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [66.8 kB] 123s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 123s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 123s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 123s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [397 kB] 123s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 123s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [2072 B] 123s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 124s Fetched 1104 kB in 1s (1378 kB/s) 124s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Calculating upgrade... 127s The following packages will be upgraded: 127s bpfcc-tools bpftrace libbpfcc liblz4-1 mawk python3-bpfcc 127s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 17.4 MB of archives. 127s After this operation, 58.9 MB of additional disk space will be used. 127s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x liblz4-1 s390x 1.9.4-3 [75.5 kB] 127s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x mawk s390x 1.3.4.20240622-2 [132 kB] 127s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libbpfcc s390x 0.30.0+ds-1ubuntu2 [677 kB] 128s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x python3-bpfcc all 0.30.0+ds-1ubuntu2 [40.3 kB] 128s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x bpfcc-tools all 0.30.0+ds-1ubuntu2 [697 kB] 128s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x bpftrace s390x 0.21.0-1ubuntu6 [15.8 MB] 129s Fetched 17.4 MB in 2s (9965 kB/s) 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54767 files and directories currently installed.) 129s Preparing to unpack .../liblz4-1_1.9.4-3_s390x.deb ... 129s Unpacking liblz4-1:s390x (1.9.4-3) over (1.9.4-2) ... 129s Setting up liblz4-1:s390x (1.9.4-3) ... 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54767 files and directories currently installed.) 129s Preparing to unpack .../mawk_1.3.4.20240622-2_s390x.deb ... 129s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ... 129s Preparing to unpack .../libbpfcc_0.30.0+ds-1ubuntu2_s390x.deb ... 129s Unpacking libbpfcc:s390x (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 129s Preparing to unpack .../python3-bpfcc_0.30.0+ds-1ubuntu2_all.deb ... 129s Unpacking python3-bpfcc (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 129s Preparing to unpack .../bpfcc-tools_0.30.0+ds-1ubuntu2_all.deb ... 129s Unpacking bpfcc-tools (0.30.0+ds-1ubuntu2) over (0.29.1+ds-1ubuntu7) ... 130s Preparing to unpack .../bpftrace_0.21.0-1ubuntu6_s390x.deb ... 130s Unpacking bpftrace (0.21.0-1ubuntu6) over (0.20.2-1ubuntu4) ... 130s Setting up mawk (1.3.4.20240622-2) ... 130s Setting up libbpfcc:s390x (0.30.0+ds-1ubuntu2) ... 130s Setting up python3-bpfcc (0.30.0+ds-1ubuntu2) ... 130s Setting up bpftrace (0.21.0-1ubuntu6) ... 130s Setting up bpfcc-tools (0.30.0+ds-1ubuntu2) ... 130s Processing triggers for man-db (2.12.1-2) ... 131s Processing triggers for libc-bin (2.39-0ubuntu9) ... 131s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 133s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 134s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Calculating upgrade... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [16:05:12]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 139s autopkgtest [16:05:12]: @@@@@@@@@@@@@@@@@@@@ apt-source xgboost 142s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (dsc) [2256 B] 142s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (tar) [2125 kB] 142s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe xgboost 2.1.0-1 (diff) [22.4 kB] 142s gpgv: Signature made Mon Jul 15 06:59:46 2024 UTC 142s gpgv: using RSA key 638BC75EC1E5C589067E35DE62645EB35F686A8A 142s gpgv: issuer "lumin@debian.org" 142s gpgv: Can't check signature: No public key 142s dpkg-source: warning: cannot verify inline signature for ./xgboost_2.1.0-1.dsc: no acceptable signature found 142s autopkgtest [16:05:15]: testing package xgboost version 2.1.0-1 143s autopkgtest [16:05:16]: build not needed 144s autopkgtest [16:05:17]: test command1: preparing testbed 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Starting pkgProblemResolver with broken count: 0 145s Starting 2 pkgProblemResolver with broken count: 0 145s Done 146s The following additional packages will be installed: 146s libblas3 libgfortran5 liblapack3 liblbfgsb0 libxgboost-dev libxgboost0 146s python3-decorator python3-joblib python3-numpy python3-scipy python3-sklearn 146s python3-sklearn-lib python3-threadpoolctl python3-xgboost 146s Suggested packages: 146s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 146s python3-dap python-sklearn-doc ipython3 146s Recommended packages: 146s python3-pytest python3-simplejson python3-psutil g++ | c++-compiler 146s python3-pil python3-matplotlib 146s The following NEW packages will be installed: 146s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 146s libxgboost-dev libxgboost0 python3-decorator python3-joblib python3-numpy 146s python3-scipy python3-sklearn python3-sklearn-lib python3-threadpoolctl 146s python3-xgboost 146s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 33.7 MB/33.7 MB of archives. 146s After this operation, 145 MB of additional disk space will be used. 146s Get:1 /tmp/autopkgtest.AKPiRo/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [736 B] 146s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 146s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-5ubuntu1 [587 kB] 146s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 147s Get:5 http://ftpmaster.internal/ubuntu oracular/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 147s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libxgboost0 s390x 2.1.0-1 [1796 kB] 147s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libxgboost-dev s390x 2.1.0-1 [74.2 kB] 147s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 147s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-joblib all 1.3.2-2 [208 kB] 147s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 147s Get:11 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-scipy s390x 1.12.0-2 [17.3 MB] 150s Get:12 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 150s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-3 [3971 kB] 150s Get:14 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 151s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x python3-xgboost s390x 2.1.0-1 [116 kB] 151s Fetched 33.7 MB in 5s (6872 kB/s) 151s Selecting previously unselected package libblas3:s390x. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54774 files and directories currently installed.) 151s Preparing to unpack .../00-libblas3_3.12.0-3build1_s390x.deb ... 151s Unpacking libblas3:s390x (3.12.0-3build1) ... 151s Selecting previously unselected package libgfortran5:s390x. 151s Preparing to unpack .../01-libgfortran5_14.1.0-5ubuntu1_s390x.deb ... 151s Unpacking libgfortran5:s390x (14.1.0-5ubuntu1) ... 151s Selecting previously unselected package liblapack3:s390x. 151s Preparing to unpack .../02-liblapack3_3.12.0-3build1_s390x.deb ... 151s Unpacking liblapack3:s390x (3.12.0-3build1) ... 151s Selecting previously unselected package liblbfgsb0:s390x. 151s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 151s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 151s Selecting previously unselected package libxgboost0. 151s Preparing to unpack .../04-libxgboost0_2.1.0-1_s390x.deb ... 151s Unpacking libxgboost0 (2.1.0-1) ... 151s Selecting previously unselected package libxgboost-dev. 151s Preparing to unpack .../05-libxgboost-dev_2.1.0-1_s390x.deb ... 151s Unpacking libxgboost-dev (2.1.0-1) ... 151s Selecting previously unselected package python3-decorator. 151s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 151s Unpacking python3-decorator (5.1.1-5) ... 151s Selecting previously unselected package python3-joblib. 151s Preparing to unpack .../07-python3-joblib_1.3.2-2_all.deb ... 151s Unpacking python3-joblib (1.3.2-2) ... 151s Selecting previously unselected package python3-numpy. 151s Preparing to unpack .../08-python3-numpy_1%3a1.26.4+ds-10_s390x.deb ... 151s Unpacking python3-numpy (1:1.26.4+ds-10) ... 152s Selecting previously unselected package python3-scipy. 152s Preparing to unpack .../09-python3-scipy_1.12.0-2_s390x.deb ... 152s Unpacking python3-scipy (1.12.0-2) ... 152s Selecting previously unselected package python3-threadpoolctl. 152s Preparing to unpack .../10-python3-threadpoolctl_3.1.0-1_all.deb ... 152s Unpacking python3-threadpoolctl (3.1.0-1) ... 152s Selecting previously unselected package python3-sklearn-lib:s390x. 152s Preparing to unpack .../11-python3-sklearn-lib_1.4.2+dfsg-3_s390x.deb ... 152s Unpacking python3-sklearn-lib:s390x (1.4.2+dfsg-3) ... 152s Selecting previously unselected package python3-sklearn. 152s Preparing to unpack .../12-python3-sklearn_1.4.2+dfsg-3_all.deb ... 152s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 152s Selecting previously unselected package python3-xgboost. 152s Preparing to unpack .../13-python3-xgboost_2.1.0-1_s390x.deb ... 152s Unpacking python3-xgboost (2.1.0-1) ... 152s Selecting previously unselected package autopkgtest-satdep. 152s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 152s Unpacking autopkgtest-satdep (0) ... 153s Setting up python3-joblib (1.3.2-2) ... 153s Setting up python3-threadpoolctl (3.1.0-1) ... 153s Setting up python3-decorator (5.1.1-5) ... 153s Setting up libblas3:s390x (3.12.0-3build1) ... 153s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 153s Setting up libgfortran5:s390x (14.1.0-5ubuntu1) ... 153s Setting up libxgboost0 (2.1.0-1) ... 153s Setting up liblapack3:s390x (3.12.0-3build1) ... 153s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 153s Setting up libxgboost-dev (2.1.0-1) ... 153s Setting up python3-numpy (1:1.26.4+ds-10) ... 156s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 156s Setting up python3-scipy (1.12.0-2) ... 160s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-3) ... 160s Setting up python3-xgboost (2.1.0-1) ... 160s Setting up python3-sklearn (1.4.2+dfsg-3) ... 163s Setting up autopkgtest-satdep (0) ... 163s Processing triggers for man-db (2.12.1-2) ... 163s Processing triggers for libc-bin (2.39-0ubuntu9) ... 166s (Reading database ... 58230 files and directories currently installed.) 166s Removing autopkgtest-satdep (0) ... 167s autopkgtest [16:05:40]: test command1: python3 demo/guide-python/basic_walkthrough.py 167s autopkgtest [16:05:40]: test command1: [----------------------- 168s Traceback (most recent call last): 168s File "/tmp/autopkgtest.AKPiRo/build.KZE/src/demo/guide-python/basic_walkthrough.py", line 18, in 168s import xgboost as xgb 168s File "/usr/lib/python3/dist-packages/xgboost/__init__.py", line 6, in 168s from . import tracker # noqa 168s ^^^^^^^^^^^^^^^^^^^^^ 168s File "/usr/lib/python3/dist-packages/xgboost/tracker.py", line 9, in 168s from .core import _LIB, _check_call, make_jcargs 168s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 269, in 168s _LIB = _load_lib() 168s ^^^^^^^^^^^ 168s File "/usr/lib/python3/dist-packages/xgboost/core.py", line 222, in _load_lib 168s raise XGBoostError( 168s xgboost.core.XGBoostError: 168s XGBoost Library (libxgboost.so) could not be loaded. 168s Likely causes: 168s * OpenMP runtime is not installed 168s - vcomp140.dll or libgomp-1.dll for Windows 168s - libomp.dylib for Mac OSX 168s - libgomp.so for Linux and other UNIX-like OSes 168s Mac OSX users: Run `brew install libomp` to install OpenMP runtime. 168s 168s * You are running 32-bit Python on a 64-bit OS 168s 168s Error message(s): ['/usr/lib/python3/dist-packages/xgboost/lib/libxgboost.so: undefined symbol: _ZN4dmlc6ParserIjfE6CreateEPKcjjS3_'] 168s 168s autopkgtest [16:05:41]: test command1: -----------------------] 169s autopkgtest [16:05:42]: test command1: - - - - - - - - - - results - - - - - - - - - - 169s command1 FAIL non-zero exit status 1 170s autopkgtest [16:05:43]: @@@@@@@@@@@@@@@@@@@@ summary 170s command1 FAIL non-zero exit status 1 184s nova [W] Using flock in scalingstack-bos01-s390x 184s Creating nova instance adt-oracular-s390x-xgboost-20240726-160253-juju-7f2275-prod-proposed-migration-environment-2-525e3ed6-d05a-4311-b134-d4dcde805705 from image adt/ubuntu-oracular-s390x-server-20240726.img (UUID dfbcf47e-ed98-4bf2-ad84-36ab9700c5bd)...