0s autopkgtest [15:54:00]: starting date and time: 2024-04-08 15:54:00+0000
  0s autopkgtest [15:54:00]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline
  0s autopkgtest [15:54:00]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9mr5s7hr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-igraph --apt-upgrade r-cran-ggm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-igraph/2.0.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-21.secgroup --name adt-noble-s390x-r-cran-ggm-20240408-155400-juju-7f2275-prod-proposed-migration-environment-3-aea2e8ab-c5cc-481c-950d-d6b28cea46e3 --image adt/ubuntu-noble-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
250s autopkgtest [15:58:10]: testbed dpkg architecture: s390x
251s autopkgtest [15:58:11]: testbed apt version: 2.7.14build2
251s autopkgtest [15:58:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup
251s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
251s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [11.3 kB]
251s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [849 kB]
252s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [94.4 kB]
252s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4680 B]
252s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [106 kB]
252s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x c-n-f Metadata [3032 B]
252s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x Packages [1192 B]
252s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted s390x c-n-f Metadata [116 B]
252s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [810 kB]
252s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x c-n-f Metadata [7292 B]
252s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x Packages [4848 B]
252s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse s390x c-n-f Metadata [116 B]
253s Fetched 2008 kB in 1s (1836 kB/s)
253s Reading package lists...
256s Reading package lists...
256s Building dependency tree...
256s Reading state information...
256s Calculating upgrade...
256s The following packages will be upgraded:
256s   libpython3.12-minimal libpython3.12-stdlib libsasl2-2 libsasl2-modules
256s   libsasl2-modules-db python3-gi python3.12 python3.12-minimal
257s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
257s Need to get 6391 kB of archives.
257s After this operation, 280 kB disk space will be freed.
257s Get:1 http://ftpmaster.internal/ubuntu noble/main s390x python3.12 s390x 3.12.2-5ubuntu3 [644 kB]
257s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-stdlib s390x 3.12.2-5ubuntu3 [2066 kB]
257s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x python3.12-minimal s390x 3.12.2-5ubuntu3 [2459 kB]
257s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libpython3.12-minimal s390x 3.12.2-5ubuntu3 [830 kB]
257s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x python3-gi s390x 3.48.2-1 [236 kB]
257s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules-db s390x 2.1.28+dfsg1-5ubuntu3 [21.3 kB]
257s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-2 s390x 2.1.28+dfsg1-5ubuntu3 [57.8 kB]
257s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libsasl2-modules s390x 2.1.28+dfsg1-5ubuntu3 [76.7 kB]
258s Fetched 6391 kB in 1s (7407 kB/s)
258s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 78332 files and directories currently installed.)
258s Preparing to unpack .../0-python3.12_3.12.2-5ubuntu3_s390x.deb ...
258s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ...
258s Preparing to unpack .../1-libpython3.12-stdlib_3.12.2-5ubuntu3_s390x.deb ...
258s Unpacking libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ...
258s Preparing to unpack .../2-python3.12-minimal_3.12.2-5ubuntu3_s390x.deb ...
258s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ...
258s Preparing to unpack .../3-libpython3.12-minimal_3.12.2-5ubuntu3_s390x.deb ...
259s Unpacking libpython3.12-minimal:s390x (3.12.2-5ubuntu3) over (3.12.2-4build4) ...
259s Preparing to unpack .../4-python3-gi_3.48.2-1_s390x.deb ...
259s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ...
259s Preparing to unpack .../5-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_s390x.deb ...
259s Unpacking libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ...
259s Preparing to unpack .../6-libsasl2-2_2.1.28+dfsg1-5ubuntu3_s390x.deb ...
259s Unpacking libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ...
259s Preparing to unpack .../7-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_s390x.deb ...
259s Unpacking libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ...
259s Setting up libsasl2-modules:s390x (2.1.28+dfsg1-5ubuntu3) ...
259s Setting up libpython3.12-minimal:s390x (3.12.2-5ubuntu3) ...
259s Setting up libsasl2-modules-db:s390x (2.1.28+dfsg1-5ubuntu3) ...
259s Setting up python3-gi (3.48.2-1) ...
259s Setting up libsasl2-2:s390x (2.1.28+dfsg1-5ubuntu3) ...
259s Setting up python3.12-minimal (3.12.2-5ubuntu3) ...
261s Setting up libpython3.12-stdlib:s390x (3.12.2-5ubuntu3) ...
261s Setting up python3.12 (3.12.2-5ubuntu3) ...
263s Processing triggers for systemd (255.4-1ubuntu7) ...
263s Processing triggers for man-db (2.12.0-4build1) ...
263s Processing triggers for libc-bin (2.39-0ubuntu8) ...
264s Reading package lists...
264s Building dependency tree...
264s Reading state information...
264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
265s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
265s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
265s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
265s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
266s Reading package lists...
267s Reading package lists...
267s Building dependency tree...
267s Reading state information...
267s Calculating upgrade...
267s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
268s Reading package lists...
268s Building dependency tree...
268s Reading state information...
268s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
271s autopkgtest [15:58:31]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr  4 21:54:17 UTC 2024
271s autopkgtest [15:58:31]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-ggm
273s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-ggm 2.5.1-1 (dsc) [2094 B]
273s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-ggm 2.5.1-1 (tar) [78.0 kB]
273s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-ggm 2.5.1-1 (diff) [2332 B]
273s gpgv: Signature made Mon Jan 29 20:43:29 2024 UTC
273s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
273s gpgv:                issuer "tille@debian.org"
273s gpgv: Can't check signature: No public key
273s dpkg-source: warning: cannot verify inline signature for ./r-cran-ggm_2.5.1-1.dsc: no acceptable signature found
273s autopkgtest [15:58:33]: testing package r-cran-ggm version 2.5.1-1
274s autopkgtest [15:58:34]: build not needed
275s autopkgtest [15:58:35]: test pkg-r-autopkgtest: preparing testbed
276s Reading package lists...
276s Building dependency tree...
276s Reading state information...
277s Starting pkgProblemResolver with broken count: 0
277s Starting 2 pkgProblemResolver with broken count: 0
277s Done
277s The following additional packages will be installed:
277s   build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu
277s   dctrl-tools fontconfig g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu
277s   gcc gcc-13 gcc-13-base gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran
277s   gfortran-13 gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu
277s   icu-devtools libamd3 libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
277s   libcairo2 libcc1-0 libcolamd3 libdatrie1 libgcc-13-dev libgfortran-13-dev
277s   libgfortran5 libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libice6
277s   libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev
277s   liblapack-dev liblapack3 libltdl7 liblzma-dev libmpc3 libncurses-dev
277s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
277s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
277s   libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsm6 libstdc++-13-dev
277s   libsuitesparseconfig7 libtcl8.6 libthai-data libthai0 libtk8.6 libubsan1
277s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 pkg-config
277s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
277s   r-bioc-biocgenerics r-bioc-graph r-cran-biocmanager r-cran-cli r-cran-cpp11
277s   r-cran-ggm r-cran-glue r-cran-igraph r-cran-lattice r-cran-lifecycle
277s   r-cran-magrittr r-cran-matrix r-cran-pkgconfig r-cran-rlang r-cran-vctrs
277s   unzip x11-common xdg-utils zip zlib1g-dev
277s Suggested packages:
277s   cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib
277s   gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison
277s   gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib
277s   gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev
277s   liblapack-doc libiodbc2-dev default-libmysqlclient-dev icu-doc liblzma-doc
277s   ncurses-doc readline-doc libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info
277s   | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
277s   texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
277s   texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
277s   r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges
277s   r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi
277s   r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-sparsem
277s   r-cran-xml r-bioc-rbgl r-cran-cluster r-bioc-biocstyle r-cran-knitr
277s   r-cran-covr r-cran-rmarkdown r-cran-testthat
277s Recommended packages:
277s   bzip2-doc libpng-tools r-recommended r-doc-html r-bioc-biocversion
277s   r-cran-remotes r-cran-rmarkdown r-cran-testthat r-cran-withr r-cran-curl
277s   r-cran-knitr r-cran-callr r-cran-covr r-cran-crayon r-cran-digest
277s   r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps
277s   r-cran-rprojroot r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-bench
277s   r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr
277s   r-cran-progress r-cran-scales r-cran-rcpp r-cran-dbi r-cran-dplyr
277s   r-cran-rsqlite r-cran-waldo r-cran-ape r-cran-rgl r-cran-vdiffr r-cran-lintr
277s   r-cran-tidyverse r-cran-fs r-cran-pillar r-cran-usethis r-cran-bit64
277s   r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot
277s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
277s   x11-xserver-utils
277s The following NEW packages will be installed:
277s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu
277s   cpp-s390x-linux-gnu dctrl-tools fontconfig g++ g++-13 g++-13-s390x-linux-gnu
277s   g++-s390x-linux-gnu gcc gcc-13 gcc-13-base gcc-13-s390x-linux-gnu
277s   gcc-s390x-linux-gnu gfortran gfortran-13 gfortran-13-s390x-linux-gnu
277s   gfortran-s390x-linux-gnu icu-devtools libamd3 libasan8 libatomic1
277s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libcolamd3 libdatrie1
277s   libgcc-13-dev libgfortran-13-dev libgfortran5 libglpk40 libgomp1
277s   libgraphite2-3 libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjpeg-dev
277s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 libltdl7
277s   liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0
277s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0
277s   libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev
277s   libreadline-dev libsm6 libstdc++-13-dev libsuitesparseconfig7 libtcl8.6
277s   libthai-data libthai0 libtk8.6 libubsan1 libxcb-render0 libxcb-shm0 libxft2
277s   libxrender1 libxss1 libxt6t64 pkg-config pkg-r-autopkgtest pkgconf
277s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-graph
277s   r-cran-biocmanager r-cran-cli r-cran-cpp11 r-cran-ggm r-cran-glue
277s   r-cran-igraph r-cran-lattice r-cran-lifecycle r-cran-magrittr r-cran-matrix
277s   r-cran-pkgconfig r-cran-rlang r-cran-vctrs unzip x11-common xdg-utils zip
277s   zlib1g-dev
278s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded.
278s Need to get 137 MB/137 MB of archives.
278s After this operation, 388 MB of additional disk space will be used.
278s Get:1 /tmp/autopkgtest.nT4wid/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [720 B]
278s Get:2 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-23ubuntu3 [48.6 kB]
278s Get:3 http://ftpmaster.internal/ubuntu noble/main s390x libisl23 s390x 0.26-3 [722 kB]
278s Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libmpc3 s390x 1.3.1-1 [54.9 kB]
278s Get:5 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [9936 kB]
279s Get:6 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-23ubuntu3 [1026 B]
279s Get:7 http://ftpmaster.internal/ubuntu noble/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B]
279s Get:8 http://ftpmaster.internal/ubuntu noble/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB]
279s Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 14-20240330-1ubuntu2 [49.8 kB]
279s Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 14-20240330-1ubuntu2 [151 kB]
279s Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 14-20240330-1ubuntu2 [31.1 kB]
279s Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 14-20240330-1ubuntu2 [9386 B]
279s Get:13 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 14-20240330-1ubuntu2 [2994 kB]
279s Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 14-20240330-1ubuntu2 [1186 kB]
279s Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu3 [1003 kB]
279s Get:16 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [19.1 MB]
280s Get:17 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-23ubuntu3 [469 kB]
280s Get:18 http://ftpmaster.internal/ubuntu noble/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B]
280s Get:19 http://ftpmaster.internal/ubuntu noble/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B]
280s Get:20 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu3 [2494 kB]
280s Get:21 http://ftpmaster.internal/ubuntu noble/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [11.3 MB]
280s Get:22 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-23ubuntu3 [14.5 kB]
280s Get:23 http://ftpmaster.internal/ubuntu noble/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B]
280s Get:24 http://ftpmaster.internal/ubuntu noble/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B]
280s Get:25 http://ftpmaster.internal/ubuntu noble/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
280s Get:26 http://ftpmaster.internal/ubuntu noble/main s390x dctrl-tools s390x 2.24-3build2 [65.4 kB]
280s Get:27 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB]
280s Get:28 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran5 s390x 14-20240330-1ubuntu2 [598 kB]
280s Get:29 http://ftpmaster.internal/ubuntu noble/main s390x libgfortran-13-dev s390x 13.2.0-23ubuntu3 [623 kB]
280s Get:30 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-23ubuntu3 [10.4 MB]
280s Get:31 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-13 s390x 13.2.0-23ubuntu3 [10.9 kB]
280s Get:32 http://ftpmaster.internal/ubuntu noble/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B]
280s Get:33 http://ftpmaster.internal/ubuntu noble/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B]
280s Get:34 http://ftpmaster.internal/ubuntu noble/main s390x icu-devtools s390x 74.2-1ubuntu1 [224 kB]
280s Get:35 http://ftpmaster.internal/ubuntu noble/main s390x libsuitesparseconfig7 s390x 1:7.6.1+dfsg-1build1 [12.8 kB]
280s Get:36 http://ftpmaster.internal/ubuntu noble/universe s390x libamd3 s390x 1:7.6.1+dfsg-1build1 [34.7 kB]
280s Get:37 http://ftpmaster.internal/ubuntu noble/main s390x libblas3 s390x 3.12.0-3 [245 kB]
280s Get:38 http://ftpmaster.internal/ubuntu noble/main s390x libblas-dev s390x 3.12.0-3 [239 kB]
280s Get:39 http://ftpmaster.internal/ubuntu noble/main s390x libbz2-dev s390x 1.0.8-5ubuntu1 [39.4 kB]
280s Get:40 http://ftpmaster.internal/ubuntu noble/main s390x libpixman-1-0 s390x 0.42.2-1 [173 kB]
280s Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-render0 s390x 1.15-1 [17.0 kB]
280s Get:42 http://ftpmaster.internal/ubuntu noble/main s390x libxcb-shm0 s390x 1.15-1 [5782 B]
280s Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libxrender1 s390x 1:0.9.10-1.1 [19.4 kB]
280s Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libcairo2 s390x 1.18.0-3 [589 kB]
280s Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libcolamd3 s390x 1:7.6.1+dfsg-1build1 [23.4 kB]
280s Get:46 http://ftpmaster.internal/ubuntu noble/main s390x libdatrie1 s390x 0.2.13-3 [22.6 kB]
280s Get:47 http://ftpmaster.internal/ubuntu noble/main s390x libltdl7 s390x 2.4.7-7 [41.6 kB]
280s Get:48 http://ftpmaster.internal/ubuntu noble/universe s390x libglpk40 s390x 5.0-1build1 [402 kB]
280s Get:49 http://ftpmaster.internal/ubuntu noble/main s390x libgraphite2-3 s390x 1.3.14-2 [90.4 kB]
280s Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB]
281s Get:51 http://ftpmaster.internal/ubuntu noble/main s390x x11-common all 1:7.7+23ubuntu2 [23.4 kB]
281s Get:52 http://ftpmaster.internal/ubuntu noble/main s390x libice6 s390x 2:1.0.10-1build2 [40.8 kB]
281s Get:53 http://ftpmaster.internal/ubuntu noble/main s390x libicu-dev s390x 74.2-1ubuntu1 [11.9 MB]
281s Get:54 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu1 [264 kB]
281s Get:55 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
281s Get:56 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
281s Get:57 http://ftpmaster.internal/ubuntu noble/main s390x liblapack3 s390x 3.12.0-3 [2979 kB]
281s Get:58 http://ftpmaster.internal/ubuntu noble/main s390x liblapack-dev s390x 3.12.0-3 [5983 kB]
281s Get:59 http://ftpmaster.internal/ubuntu noble/main s390x libncurses-dev s390x 6.4+20240113-1ubuntu1 [412 kB]
281s Get:60 http://ftpmaster.internal/ubuntu noble/main s390x libthai-data all 0.1.29-2 [158 kB]
281s Get:61 http://ftpmaster.internal/ubuntu noble/main s390x libthai0 s390x 0.1.29-2 [20.6 kB]
281s Get:62 http://ftpmaster.internal/ubuntu noble/main s390x libpango-1.0-0 s390x 1.52.1+ds-1build1 [243 kB]
281s Get:63 http://ftpmaster.internal/ubuntu noble/main s390x libpangoft2-1.0-0 s390x 1.52.1+ds-1build1 [44.0 kB]
281s Get:64 http://ftpmaster.internal/ubuntu noble/main s390x libpangocairo-1.0-0 s390x 1.52.1+ds-1build1 [28.8 kB]
281s Get:65 http://ftpmaster.internal/ubuntu noble/main s390x libpaper1 s390x 1.1.29 [13.3 kB]
281s Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libpaper-utils s390x 1.1.29 [8452 B]
281s Get:67 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-16-0 s390x 10.42-4ubuntu1 [229 kB]
281s Get:68 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-32-0 s390x 10.42-4ubuntu1 [217 kB]
281s Get:69 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-posix3 s390x 10.42-4ubuntu1 [6704 B]
281s Get:70 http://ftpmaster.internal/ubuntu noble/main s390x libpcre2-dev s390x 10.42-4ubuntu1 [805 kB]
281s Get:71 http://ftpmaster.internal/ubuntu noble/main s390x libpkgconf3 s390x 1.8.1-2 [30.4 kB]
281s Get:72 http://ftpmaster.internal/ubuntu noble/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB]
281s Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libpng-dev s390x 1.6.43-5build1 [277 kB]
281s Get:74 http://ftpmaster.internal/ubuntu noble/main s390x libreadline-dev s390x 8.2-4build1 [189 kB]
281s Get:75 http://ftpmaster.internal/ubuntu noble/main s390x libsm6 s390x 2:1.2.3-1build2 [16.9 kB]
281s Get:76 http://ftpmaster.internal/ubuntu noble/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB]
281s Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libxft2 s390x 2.3.6-1 [44.3 kB]
281s Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libxss1 s390x 1:1.2.3-1build2 [8192 B]
281s Get:79 http://ftpmaster.internal/ubuntu noble/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB]
281s Get:80 http://ftpmaster.internal/ubuntu noble/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
281s Get:81 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf-bin s390x 1.8.1-2 [20.8 kB]
281s Get:82 http://ftpmaster.internal/ubuntu noble/main s390x pkgconf s390x 1.8.1-2 [16.7 kB]
281s Get:83 http://ftpmaster.internal/ubuntu noble/main s390x pkg-config s390x 1.8.1-2 [7170 B]
281s Get:84 http://ftpmaster.internal/ubuntu noble/main s390x zip s390x 3.0-13 [175 kB]
281s Get:85 http://ftpmaster.internal/ubuntu noble/main s390x unzip s390x 6.0-28ubuntu3 [180 kB]
281s Get:86 http://ftpmaster.internal/ubuntu noble/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
281s Get:87 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-core s390x 4.3.3-2build2 [27.1 MB]
282s Get:88 http://ftpmaster.internal/ubuntu noble/main s390x liblzma-dev s390x 5.6.1+really5.4.5-1 [184 kB]
282s Get:89 http://ftpmaster.internal/ubuntu noble/universe s390x r-base-dev all 4.3.3-2build2 [4334 B]
282s Get:90 http://ftpmaster.internal/ubuntu noble/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
282s Get:91 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-biocgenerics all 0.48.1-2 [595 kB]
282s Get:92 http://ftpmaster.internal/ubuntu noble/universe s390x r-bioc-graph s390x 1.80.0-1 [1290 kB]
282s Get:93 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
282s Get:94 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB]
282s Get:95 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-cpp11 all 0.4.7-1 [266 kB]
282s Get:96 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB]
282s Get:97 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-rlang s390x 1.1.3-1 [1672 kB]
282s Get:98 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
282s Get:99 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
282s Get:100 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-lattice s390x 0.22-5-1 [1341 kB]
282s Get:101 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-matrix s390x 1.6-5-1 [3983 kB]
282s Get:102 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
283s Get:103 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
283s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x r-cran-igraph s390x 2.0.3-1 [5205 kB]
283s Get:105 http://ftpmaster.internal/ubuntu noble/universe s390x r-cran-ggm all 2.5.1-1 [440 kB]
284s Preconfiguring packages ...
284s Fetched 137 MB in 6s (23.9 MB/s)
284s Selecting previously unselected package gcc-13-base:s390x.
284s (Reading database ... 
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(Reading database ... 78333 files and directories currently installed.)
284s Preparing to unpack .../000-gcc-13-base_13.2.0-23ubuntu3_s390x.deb ...
284s Unpacking gcc-13-base:s390x (13.2.0-23ubuntu3) ...
284s Selecting previously unselected package libisl23:s390x.
284s Preparing to unpack .../001-libisl23_0.26-3_s390x.deb ...
284s Unpacking libisl23:s390x (0.26-3) ...
284s Selecting previously unselected package libmpc3:s390x.
284s Preparing to unpack .../002-libmpc3_1.3.1-1_s390x.deb ...
284s Unpacking libmpc3:s390x (1.3.1-1) ...
284s Selecting previously unselected package cpp-13-s390x-linux-gnu.
284s Preparing to unpack .../003-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ...
284s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
285s Selecting previously unselected package cpp-13.
285s Preparing to unpack .../004-cpp-13_13.2.0-23ubuntu3_s390x.deb ...
285s Unpacking cpp-13 (13.2.0-23ubuntu3) ...
285s Selecting previously unselected package cpp-s390x-linux-gnu.
285s Preparing to unpack .../005-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
285s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
285s Selecting previously unselected package cpp.
285s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ...
285s Unpacking cpp (4:13.2.0-7ubuntu1) ...
285s Selecting previously unselected package libcc1-0:s390x.
285s Preparing to unpack .../007-libcc1-0_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libcc1-0:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libgomp1:s390x.
285s Preparing to unpack .../008-libgomp1_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libgomp1:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libitm1:s390x.
285s Preparing to unpack .../009-libitm1_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libitm1:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libatomic1:s390x.
285s Preparing to unpack .../010-libatomic1_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libatomic1:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libasan8:s390x.
285s Preparing to unpack .../011-libasan8_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libasan8:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libubsan1:s390x.
285s Preparing to unpack .../012-libubsan1_14-20240330-1ubuntu2_s390x.deb ...
285s Unpacking libubsan1:s390x (14-20240330-1ubuntu2) ...
285s Selecting previously unselected package libgcc-13-dev:s390x.
285s Preparing to unpack .../013-libgcc-13-dev_13.2.0-23ubuntu3_s390x.deb ...
285s Unpacking libgcc-13-dev:s390x (13.2.0-23ubuntu3) ...
285s Selecting previously unselected package gcc-13-s390x-linux-gnu.
285s Preparing to unpack .../014-gcc-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ...
285s Unpacking gcc-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package gcc-13.
286s Preparing to unpack .../015-gcc-13_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking gcc-13 (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package gcc-s390x-linux-gnu.
286s Preparing to unpack .../016-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
286s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
286s Selecting previously unselected package gcc.
286s Preparing to unpack .../017-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ...
286s Unpacking gcc (4:13.2.0-7ubuntu1) ...
286s Selecting previously unselected package libstdc++-13-dev:s390x.
286s Preparing to unpack .../018-libstdc++-13-dev_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking libstdc++-13-dev:s390x (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package g++-13-s390x-linux-gnu.
286s Preparing to unpack .../019-g++-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking g++-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package g++-13.
286s Preparing to unpack .../020-g++-13_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking g++-13 (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package g++-s390x-linux-gnu.
286s Preparing to unpack .../021-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
286s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
286s Selecting previously unselected package g++.
286s Preparing to unpack .../022-g++_4%3a13.2.0-7ubuntu1_s390x.deb ...
286s Unpacking g++ (4:13.2.0-7ubuntu1) ...
286s Selecting previously unselected package build-essential.
286s Preparing to unpack .../023-build-essential_12.10ubuntu1_s390x.deb ...
286s Unpacking build-essential (12.10ubuntu1) ...
286s Selecting previously unselected package dctrl-tools.
286s Preparing to unpack .../024-dctrl-tools_2.24-3build2_s390x.deb ...
286s Unpacking dctrl-tools (2.24-3build2) ...
286s Selecting previously unselected package fontconfig.
286s Preparing to unpack .../025-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ...
286s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
286s Selecting previously unselected package libgfortran5:s390x.
286s Preparing to unpack .../026-libgfortran5_14-20240330-1ubuntu2_s390x.deb ...
286s Unpacking libgfortran5:s390x (14-20240330-1ubuntu2) ...
286s Selecting previously unselected package libgfortran-13-dev:s390x.
286s Preparing to unpack .../027-libgfortran-13-dev_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking libgfortran-13-dev:s390x (13.2.0-23ubuntu3) ...
286s Selecting previously unselected package gfortran-13-s390x-linux-gnu.
286s Preparing to unpack .../028-gfortran-13-s390x-linux-gnu_13.2.0-23ubuntu3_s390x.deb ...
286s Unpacking gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
287s Selecting previously unselected package gfortran-13.
287s Preparing to unpack .../029-gfortran-13_13.2.0-23ubuntu3_s390x.deb ...
287s Unpacking gfortran-13 (13.2.0-23ubuntu3) ...
287s Selecting previously unselected package gfortran-s390x-linux-gnu.
287s Preparing to unpack .../030-gfortran-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
287s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
287s Selecting previously unselected package gfortran.
287s Preparing to unpack .../031-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ...
287s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
287s Selecting previously unselected package icu-devtools.
287s Preparing to unpack .../032-icu-devtools_74.2-1ubuntu1_s390x.deb ...
287s Unpacking icu-devtools (74.2-1ubuntu1) ...
287s Selecting previously unselected package libsuitesparseconfig7:s390x.
287s Preparing to unpack .../033-libsuitesparseconfig7_1%3a7.6.1+dfsg-1build1_s390x.deb ...
287s Unpacking libsuitesparseconfig7:s390x (1:7.6.1+dfsg-1build1) ...
287s Selecting previously unselected package libamd3:s390x.
287s Preparing to unpack .../034-libamd3_1%3a7.6.1+dfsg-1build1_s390x.deb ...
287s Unpacking libamd3:s390x (1:7.6.1+dfsg-1build1) ...
287s Selecting previously unselected package libblas3:s390x.
287s Preparing to unpack .../035-libblas3_3.12.0-3_s390x.deb ...
287s Unpacking libblas3:s390x (3.12.0-3) ...
287s Selecting previously unselected package libblas-dev:s390x.
287s Preparing to unpack .../036-libblas-dev_3.12.0-3_s390x.deb ...
287s Unpacking libblas-dev:s390x (3.12.0-3) ...
287s Selecting previously unselected package libbz2-dev:s390x.
287s Preparing to unpack .../037-libbz2-dev_1.0.8-5ubuntu1_s390x.deb ...
287s Unpacking libbz2-dev:s390x (1.0.8-5ubuntu1) ...
287s Selecting previously unselected package libpixman-1-0:s390x.
287s Preparing to unpack .../038-libpixman-1-0_0.42.2-1_s390x.deb ...
287s Unpacking libpixman-1-0:s390x (0.42.2-1) ...
287s Selecting previously unselected package libxcb-render0:s390x.
287s Preparing to unpack .../039-libxcb-render0_1.15-1_s390x.deb ...
287s Unpacking libxcb-render0:s390x (1.15-1) ...
287s Selecting previously unselected package libxcb-shm0:s390x.
287s Preparing to unpack .../040-libxcb-shm0_1.15-1_s390x.deb ...
287s Unpacking libxcb-shm0:s390x (1.15-1) ...
287s Selecting previously unselected package libxrender1:s390x.
287s Preparing to unpack .../041-libxrender1_1%3a0.9.10-1.1_s390x.deb ...
287s Unpacking libxrender1:s390x (1:0.9.10-1.1) ...
287s Selecting previously unselected package libcairo2:s390x.
287s Preparing to unpack .../042-libcairo2_1.18.0-3_s390x.deb ...
287s Unpacking libcairo2:s390x (1.18.0-3) ...
287s Selecting previously unselected package libcolamd3:s390x.
287s Preparing to unpack .../043-libcolamd3_1%3a7.6.1+dfsg-1build1_s390x.deb ...
287s Unpacking libcolamd3:s390x (1:7.6.1+dfsg-1build1) ...
287s Selecting previously unselected package libdatrie1:s390x.
287s Preparing to unpack .../044-libdatrie1_0.2.13-3_s390x.deb ...
287s Unpacking libdatrie1:s390x (0.2.13-3) ...
287s Selecting previously unselected package libltdl7:s390x.
287s Preparing to unpack .../045-libltdl7_2.4.7-7_s390x.deb ...
287s Unpacking libltdl7:s390x (2.4.7-7) ...
287s Selecting previously unselected package libglpk40:s390x.
287s Preparing to unpack .../046-libglpk40_5.0-1build1_s390x.deb ...
287s Unpacking libglpk40:s390x (5.0-1build1) ...
287s Selecting previously unselected package libgraphite2-3:s390x.
287s Preparing to unpack .../047-libgraphite2-3_1.3.14-2_s390x.deb ...
287s Unpacking libgraphite2-3:s390x (1.3.14-2) ...
287s Selecting previously unselected package libharfbuzz0b:s390x.
287s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2build2_s390x.deb ...
287s Unpacking libharfbuzz0b:s390x (8.3.0-2build2) ...
287s Selecting previously unselected package x11-common.
287s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu2_all.deb ...
287s Unpacking x11-common (1:7.7+23ubuntu2) ...
287s Selecting previously unselected package libice6:s390x.
287s Preparing to unpack .../050-libice6_2%3a1.0.10-1build2_s390x.deb ...
287s Unpacking libice6:s390x (2:1.0.10-1build2) ...
287s Selecting previously unselected package libicu-dev:s390x.
287s Preparing to unpack .../051-libicu-dev_74.2-1ubuntu1_s390x.deb ...
287s Unpacking libicu-dev:s390x (74.2-1ubuntu1) ...
288s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
288s Preparing to unpack .../052-libjpeg-turbo8-dev_2.1.5-2ubuntu1_s390x.deb ...
288s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ...
288s Selecting previously unselected package libjpeg8-dev:s390x.
288s Preparing to unpack .../053-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
288s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
288s Selecting previously unselected package libjpeg-dev:s390x.
288s Preparing to unpack .../054-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
288s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
288s Selecting previously unselected package liblapack3:s390x.
288s Preparing to unpack .../055-liblapack3_3.12.0-3_s390x.deb ...
288s Unpacking liblapack3:s390x (3.12.0-3) ...
288s Selecting previously unselected package liblapack-dev:s390x.
288s Preparing to unpack .../056-liblapack-dev_3.12.0-3_s390x.deb ...
288s Unpacking liblapack-dev:s390x (3.12.0-3) ...
288s Selecting previously unselected package libncurses-dev:s390x.
288s Preparing to unpack .../057-libncurses-dev_6.4+20240113-1ubuntu1_s390x.deb ...
288s Unpacking libncurses-dev:s390x (6.4+20240113-1ubuntu1) ...
288s Selecting previously unselected package libthai-data.
288s Preparing to unpack .../058-libthai-data_0.1.29-2_all.deb ...
288s Unpacking libthai-data (0.1.29-2) ...
288s Selecting previously unselected package libthai0:s390x.
288s Preparing to unpack .../059-libthai0_0.1.29-2_s390x.deb ...
288s Unpacking libthai0:s390x (0.1.29-2) ...
288s Selecting previously unselected package libpango-1.0-0:s390x.
288s Preparing to unpack .../060-libpango-1.0-0_1.52.1+ds-1build1_s390x.deb ...
288s Unpacking libpango-1.0-0:s390x (1.52.1+ds-1build1) ...
288s Selecting previously unselected package libpangoft2-1.0-0:s390x.
288s Preparing to unpack .../061-libpangoft2-1.0-0_1.52.1+ds-1build1_s390x.deb ...
288s Unpacking libpangoft2-1.0-0:s390x (1.52.1+ds-1build1) ...
288s Selecting previously unselected package libpangocairo-1.0-0:s390x.
288s Preparing to unpack .../062-libpangocairo-1.0-0_1.52.1+ds-1build1_s390x.deb ...
288s Unpacking libpangocairo-1.0-0:s390x (1.52.1+ds-1build1) ...
288s Selecting previously unselected package libpaper1:s390x.
288s Preparing to unpack .../063-libpaper1_1.1.29_s390x.deb ...
288s Unpacking libpaper1:s390x (1.1.29) ...
288s Selecting previously unselected package libpaper-utils.
288s Preparing to unpack .../064-libpaper-utils_1.1.29_s390x.deb ...
288s Unpacking libpaper-utils (1.1.29) ...
288s Selecting previously unselected package libpcre2-16-0:s390x.
288s Preparing to unpack .../065-libpcre2-16-0_10.42-4ubuntu1_s390x.deb ...
288s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu1) ...
288s Selecting previously unselected package libpcre2-32-0:s390x.
288s Preparing to unpack .../066-libpcre2-32-0_10.42-4ubuntu1_s390x.deb ...
288s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu1) ...
288s Selecting previously unselected package libpcre2-posix3:s390x.
289s Preparing to unpack .../067-libpcre2-posix3_10.42-4ubuntu1_s390x.deb ...
289s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu1) ...
289s Selecting previously unselected package libpcre2-dev:s390x.
289s Preparing to unpack .../068-libpcre2-dev_10.42-4ubuntu1_s390x.deb ...
289s Unpacking libpcre2-dev:s390x (10.42-4ubuntu1) ...
289s Selecting previously unselected package libpkgconf3:s390x.
289s Preparing to unpack .../069-libpkgconf3_1.8.1-2_s390x.deb ...
289s Unpacking libpkgconf3:s390x (1.8.1-2) ...
289s Selecting previously unselected package zlib1g-dev:s390x.
289s Preparing to unpack .../070-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ...
289s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
289s Selecting previously unselected package libpng-dev:s390x.
289s Preparing to unpack .../071-libpng-dev_1.6.43-5build1_s390x.deb ...
289s Unpacking libpng-dev:s390x (1.6.43-5build1) ...
289s Selecting previously unselected package libreadline-dev:s390x.
289s Preparing to unpack .../072-libreadline-dev_8.2-4build1_s390x.deb ...
289s Unpacking libreadline-dev:s390x (8.2-4build1) ...
289s Selecting previously unselected package libsm6:s390x.
289s Preparing to unpack .../073-libsm6_2%3a1.2.3-1build2_s390x.deb ...
289s Unpacking libsm6:s390x (2:1.2.3-1build2) ...
289s Selecting previously unselected package libtcl8.6:s390x.
289s Preparing to unpack .../074-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ...
289s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ...
289s Selecting previously unselected package libxft2:s390x.
289s Preparing to unpack .../075-libxft2_2.3.6-1_s390x.deb ...
289s Unpacking libxft2:s390x (2.3.6-1) ...
289s Selecting previously unselected package libxss1:s390x.
289s Preparing to unpack .../076-libxss1_1%3a1.2.3-1build2_s390x.deb ...
289s Unpacking libxss1:s390x (1:1.2.3-1build2) ...
289s Selecting previously unselected package libtk8.6:s390x.
289s Preparing to unpack .../077-libtk8.6_8.6.14-1build1_s390x.deb ...
289s Unpacking libtk8.6:s390x (8.6.14-1build1) ...
289s Selecting previously unselected package libxt6t64:s390x.
289s Preparing to unpack .../078-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
289s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
289s Selecting previously unselected package pkgconf-bin.
289s Preparing to unpack .../079-pkgconf-bin_1.8.1-2_s390x.deb ...
289s Unpacking pkgconf-bin (1.8.1-2) ...
289s Selecting previously unselected package pkgconf:s390x.
289s Preparing to unpack .../080-pkgconf_1.8.1-2_s390x.deb ...
289s Unpacking pkgconf:s390x (1.8.1-2) ...
289s Selecting previously unselected package pkg-config:s390x.
289s Preparing to unpack .../081-pkg-config_1.8.1-2_s390x.deb ...
289s Unpacking pkg-config:s390x (1.8.1-2) ...
289s Selecting previously unselected package zip.
289s Preparing to unpack .../082-zip_3.0-13_s390x.deb ...
289s Unpacking zip (3.0-13) ...
289s Selecting previously unselected package unzip.
289s Preparing to unpack .../083-unzip_6.0-28ubuntu3_s390x.deb ...
289s Unpacking unzip (6.0-28ubuntu3) ...
289s Selecting previously unselected package xdg-utils.
289s Preparing to unpack .../084-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
289s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
289s Selecting previously unselected package r-base-core.
289s Preparing to unpack .../085-r-base-core_4.3.3-2build2_s390x.deb ...
289s Unpacking r-base-core (4.3.3-2build2) ...
290s Selecting previously unselected package liblzma-dev:s390x.
290s Preparing to unpack .../086-liblzma-dev_5.6.1+really5.4.5-1_s390x.deb ...
290s Unpacking liblzma-dev:s390x (5.6.1+really5.4.5-1) ...
290s Selecting previously unselected package r-base-dev.
290s Preparing to unpack .../087-r-base-dev_4.3.3-2build2_all.deb ...
290s Unpacking r-base-dev (4.3.3-2build2) ...
290s Selecting previously unselected package pkg-r-autopkgtest.
290s Preparing to unpack .../088-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
290s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
290s Selecting previously unselected package r-bioc-biocgenerics.
290s Preparing to unpack .../089-r-bioc-biocgenerics_0.48.1-2_all.deb ...
290s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
290s Selecting previously unselected package r-bioc-graph.
290s Preparing to unpack .../090-r-bioc-graph_1.80.0-1_s390x.deb ...
290s Unpacking r-bioc-graph (1.80.0-1) ...
290s Selecting previously unselected package r-cran-biocmanager.
290s Preparing to unpack .../091-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
290s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
290s Selecting previously unselected package r-cran-cli.
290s Preparing to unpack .../092-r-cran-cli_3.6.2-1_s390x.deb ...
290s Unpacking r-cran-cli (3.6.2-1) ...
290s Selecting previously unselected package r-cran-cpp11.
290s Preparing to unpack .../093-r-cran-cpp11_0.4.7-1_all.deb ...
290s Unpacking r-cran-cpp11 (0.4.7-1) ...
290s Selecting previously unselected package r-cran-glue.
290s Preparing to unpack .../094-r-cran-glue_1.7.0-1_s390x.deb ...
290s Unpacking r-cran-glue (1.7.0-1) ...
290s Selecting previously unselected package r-cran-rlang.
290s Preparing to unpack .../095-r-cran-rlang_1.1.3-1_s390x.deb ...
290s Unpacking r-cran-rlang (1.1.3-1) ...
290s Selecting previously unselected package r-cran-lifecycle.
290s Preparing to unpack .../096-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
290s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
290s Selecting previously unselected package r-cran-magrittr.
290s Preparing to unpack .../097-r-cran-magrittr_2.0.3-1_s390x.deb ...
290s Unpacking r-cran-magrittr (2.0.3-1) ...
290s Selecting previously unselected package r-cran-lattice.
290s Preparing to unpack .../098-r-cran-lattice_0.22-5-1_s390x.deb ...
290s Unpacking r-cran-lattice (0.22-5-1) ...
290s Selecting previously unselected package r-cran-matrix.
290s Preparing to unpack .../099-r-cran-matrix_1.6-5-1_s390x.deb ...
290s Unpacking r-cran-matrix (1.6-5-1) ...
290s Selecting previously unselected package r-cran-pkgconfig.
290s Preparing to unpack .../100-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
290s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
290s Selecting previously unselected package r-cran-vctrs.
290s Preparing to unpack .../101-r-cran-vctrs_0.6.5-1_s390x.deb ...
290s Unpacking r-cran-vctrs (0.6.5-1) ...
290s Selecting previously unselected package r-cran-igraph.
290s Preparing to unpack .../102-r-cran-igraph_2.0.3-1_s390x.deb ...
290s Unpacking r-cran-igraph (2.0.3-1) ...
291s Selecting previously unselected package r-cran-ggm.
291s Preparing to unpack .../103-r-cran-ggm_2.5.1-1_all.deb ...
291s Unpacking r-cran-ggm (2.5.1-1) ...
291s Selecting previously unselected package autopkgtest-satdep.
291s Preparing to unpack .../104-1-autopkgtest-satdep.deb ...
291s Unpacking autopkgtest-satdep (0) ...
291s Setting up libgraphite2-3:s390x (1.3.14-2) ...
291s Setting up libpixman-1-0:s390x (0.42.2-1) ...
291s Setting up libpaper1:s390x (1.1.29) ...
291s 
291s Creating config file /etc/papersize with new version
291s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
293s Regenerating fonts cache... done.
293s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu1) ...
293s Setting up libncurses-dev:s390x (6.4+20240113-1ubuntu1) ...
293s Setting up libxrender1:s390x (1:0.9.10-1.1) ...
293s Setting up libdatrie1:s390x (0.2.13-3) ...
293s Setting up libxcb-render0:s390x (1.15-1) ...
293s Setting up unzip (6.0-28ubuntu3) ...
293s Setting up x11-common (1:7.7+23ubuntu2) ...
293s Setting up libxcb-shm0:s390x (1.15-1) ...
293s Setting up libpaper-utils (1.1.29) ...
293s Setting up libreadline-dev:s390x (8.2-4build1) ...
293s Setting up libgomp1:s390x (14-20240330-1ubuntu2) ...
293s Setting up libcairo2:s390x (1.18.0-3) ...
293s Setting up libpcre2-16-0:s390x (10.42-4ubuntu1) ...
293s Setting up zip (3.0-13) ...
293s Setting up libpcre2-32-0:s390x (10.42-4ubuntu1) ...
293s Setting up libblas3:s390x (3.12.0-3) ...
293s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
293s Setting up libpkgconf3:s390x (1.8.1-2) ...
293s Setting up gcc-13-base:s390x (13.2.0-23ubuntu3) ...
293s Setting up libmpc3:s390x (1.3.1-1) ...
293s Setting up libatomic1:s390x (14-20240330-1ubuntu2) ...
293s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ...
293s Setting up icu-devtools (74.2-1ubuntu1) ...
293s Setting up pkgconf-bin (1.8.1-2) ...
293s Setting up libltdl7:s390x (2.4.7-7) ...
293s Setting up libgfortran5:s390x (14-20240330-1ubuntu2) ...
293s Setting up liblzma-dev:s390x (5.6.1+really5.4.5-1) ...
293s Setting up libubsan1:s390x (14-20240330-1ubuntu2) ...
293s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
293s Setting up libpcre2-posix3:s390x (10.42-4ubuntu1) ...
293s Setting up libasan8:s390x (14-20240330-1ubuntu2) ...
293s Setting up libsuitesparseconfig7:s390x (1:7.6.1+dfsg-1build1) ...
293s Setting up libharfbuzz0b:s390x (8.3.0-2build2) ...
293s Setting up libthai-data (0.1.29-2) ...
293s Setting up libxss1:s390x (1:1.2.3-1build2) ...
293s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
293s Setting up libisl23:s390x (0.26-3) ...
293s Setting up libicu-dev:s390x (74.2-1ubuntu1) ...
293s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
293s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
293s Setting up libcc1-0:s390x (14-20240330-1ubuntu2) ...
293s Setting up libblas-dev:s390x (3.12.0-3) ...
293s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
293s Setting up dctrl-tools (2.24-3build2) ...
293s Setting up libitm1:s390x (14-20240330-1ubuntu2) ...
293s Setting up libbz2-dev:s390x (1.0.8-5ubuntu1) ...
293s Setting up libice6:s390x (2:1.0.10-1build2) ...
293s Setting up liblapack3:s390x (3.12.0-3) ...
293s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
293s Setting up libxft2:s390x (2.3.6-1) ...
293s Setting up libamd3:s390x (1:7.6.1+dfsg-1build1) ...
293s Setting up libpcre2-dev:s390x (10.42-4ubuntu1) ...
293s Setting up libcolamd3:s390x (1:7.6.1+dfsg-1build1) ...
293s Setting up libtk8.6:s390x (8.6.14-1build1) ...
293s Setting up libpng-dev:s390x (1.6.43-5build1) ...
293s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
293s Setting up pkgconf:s390x (1.8.1-2) ...
293s Setting up libthai0:s390x (0.1.29-2) ...
293s Setting up cpp-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
293s Setting up libglpk40:s390x (5.0-1build1) ...
293s Setting up liblapack-dev:s390x (3.12.0-3) ...
293s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
293s Setting up pkg-config:s390x (1.8.1-2) ...
293s Setting up libgcc-13-dev:s390x (13.2.0-23ubuntu3) ...
293s Setting up libgfortran-13-dev:s390x (13.2.0-23ubuntu3) ...
293s Setting up libsm6:s390x (2:1.2.3-1build2) ...
293s Setting up libstdc++-13-dev:s390x (13.2.0-23ubuntu3) ...
293s Setting up cpp-13 (13.2.0-23ubuntu3) ...
293s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
293s Setting up libpango-1.0-0:s390x (1.52.1+ds-1build1) ...
293s Setting up gcc-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
293s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
293s Setting up g++-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
293s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
293s Setting up gcc-13 (13.2.0-23ubuntu3) ...
293s Setting up cpp (4:13.2.0-7ubuntu1) ...
293s Setting up gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu3) ...
293s Setting up libpangoft2-1.0-0:s390x (1.52.1+ds-1build1) ...
293s Setting up libpangocairo-1.0-0:s390x (1.52.1+ds-1build1) ...
293s Setting up g++-13 (13.2.0-23ubuntu3) ...
293s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
293s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
293s Setting up gcc (4:13.2.0-7ubuntu1) ...
293s Setting up gfortran-13 (13.2.0-23ubuntu3) ...
293s Setting up r-base-core (4.3.3-2build2) ...
294s 
294s Creating config file /etc/R/Renviron with new version
294s Setting up r-cran-lattice (0.22-5-1) ...
294s Setting up g++ (4:13.2.0-7ubuntu1) ...
294s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
294s Setting up build-essential (12.10ubuntu1) ...
294s Setting up r-cran-magrittr (2.0.3-1) ...
294s Setting up r-bioc-biocgenerics (0.48.1-2) ...
294s Setting up r-cran-rlang (1.1.3-1) ...
294s Setting up r-cran-glue (1.7.0-1) ...
294s Setting up r-cran-cli (3.6.2-1) ...
294s Setting up gfortran (4:13.2.0-7ubuntu1) ...
294s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
294s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
294s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
294s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
294s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
294s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
294s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
294s Setting up r-cran-cpp11 (0.4.7-1) ...
294s Setting up r-cran-matrix (1.6-5-1) ...
294s Setting up r-cran-vctrs (0.6.5-1) ...
294s Setting up r-bioc-graph (1.80.0-1) ...
294s Setting up r-base-dev (4.3.3-2build2) ...
294s Setting up r-cran-igraph (2.0.3-1) ...
294s Setting up r-cran-ggm (2.5.1-1) ...
294s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
294s Setting up autopkgtest-satdep (0) ...
294s Processing triggers for man-db (2.12.0-4build1) ...
295s Processing triggers for install-info (7.1-3build2) ...
295s Processing triggers for libc-bin (2.39-0ubuntu8) ...
300s (Reading database ... 83693 files and directories currently installed.)
300s Removing autopkgtest-satdep (0) ...
300s autopkgtest [15:59:00]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
300s autopkgtest [15:59:00]: test pkg-r-autopkgtest: [-----------------------
301s Test: Try to load the R library ggm
301s 
301s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
301s Copyright (C) 2024 The R Foundation for Statistical Computing
301s Platform: s390x-ibm-linux-gnu (64-bit)
301s 
301s R is free software and comes with ABSOLUTELY NO WARRANTY.
301s You are welcome to redistribute it under certain conditions.
301s Type 'license()' or 'licence()' for distribution details.
301s 
301s R is a collaborative project with many contributors.
301s Type 'contributors()' for more information and
301s 'citation()' on how to cite R or R packages in publications.
301s 
301s Type 'demo()' for some demos, 'help()' for on-line help, or
301s 'help.start()' for an HTML browser interface to help.
301s Type 'q()' to quit R.
301s 
301s > library('ggm')
302s > 
302s > 
302s Other tests are currently unsupported!
302s They will be progressively added.
302s autopkgtest [15:59:02]: test pkg-r-autopkgtest: -----------------------]
302s pkg-r-autopkgtest    PASS
302s autopkgtest [15:59:02]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
303s autopkgtest [15:59:03]: @@@@@@@@@@@@@@@@@@@@ summary
303s pkg-r-autopkgtest    PASS
317s Creating nova instance adt-noble-s390x-r-cran-ggm-20240408-155400-juju-7f2275-prod-proposed-migration-environment-3-aea2e8ab-c5cc-481c-950d-d6b28cea46e3 from image adt/ubuntu-noble-s390x-server-20240408.img (UUID ba451603-1cf6-4234-8732-73f1ede19770)...