0s autopkgtest [10:25:48]: starting date and time: 2024-06-16 10:25:48+0000
  0s autopkgtest [10:25:48]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [10:25:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gkuzqg1s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bigmemory --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-8.secgroup --name adt-oracular-s390x-r-cran-bigmemory-20240616-102548-juju-7f2275-prod-proposed-migration-environment-2-347f356d-5911-4349-b28a-29d0c6905633 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
194s autopkgtest [10:29:02]: testbed dpkg architecture: s390x
195s autopkgtest [10:29:03]: testbed apt version: 2.9.5
195s autopkgtest [10:29:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup
196s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
196s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
196s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [389 kB]
196s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
196s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [36.1 kB]
196s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [43.9 kB]
196s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1860 B]
196s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [298 kB]
196s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [2528 B]
196s Fetched 892 kB in 1s (1125 kB/s)
196s Reading package lists...
199s Reading package lists...
199s Building dependency tree...
199s Reading state information...
199s Calculating upgrade...
199s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
199s Reading package lists...
199s Building dependency tree...
199s Reading state information...
200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
200s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
200s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [110 kB]
200s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
200s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
200s Get:5 http://ftpmaster.internal/ubuntu oracular/main Sources [1384 kB]
201s Get:6 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.1 MB]
202s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1336 kB]
202s Get:8 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.9 MB]
207s Fetched 37.8 MB in 7s (5171 kB/s)
208s Reading package lists...
208s Reading package lists...
208s Building dependency tree...
208s Reading state information...
208s Calculating upgrade...
209s The following packages will be upgraded:
209s   libldap-common libldap2
209s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
209s Need to get 230 kB of archives.
209s After this operation, 16.4 kB disk space will be freed.
209s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x libldap-common all 2.6.7+dfsg-1~exp1ubuntu9 [31.5 kB]
209s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libldap2 s390x 2.6.7+dfsg-1~exp1ubuntu9 [199 kB]
209s Fetched 230 kB in 0s (557 kB/s)
209s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54671 files and directories currently installed.)
209s Preparing to unpack .../libldap-common_2.6.7+dfsg-1~exp1ubuntu9_all.deb ...
209s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
209s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu9_s390x.deb ...
209s Unpacking libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
209s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu9) ...
209s Setting up libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu9) ...
209s Processing triggers for man-db (2.12.1-2) ...
210s Processing triggers for libc-bin (2.39-0ubuntu9) ...
210s Reading package lists...
210s Building dependency tree...
210s Reading state information...
210s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
213s autopkgtest [10:29:21]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024
213s autopkgtest [10:29:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bigmemory
214s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (dsc) [2219 B]
214s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (tar) [72.3 kB]
214s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe r-cran-bigmemory 4.6.4-1 (diff) [3096 B]
214s gpgv: Signature made Wed Jan 17 13:08:49 2024 UTC
214s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
214s gpgv:                issuer "tille@debian.org"
214s gpgv: Can't check signature: No public key
214s dpkg-source: warning: cannot verify inline signature for ./r-cran-bigmemory_4.6.4-1.dsc: no acceptable signature found
215s autopkgtest [10:29:23]: testing package r-cran-bigmemory version 4.6.4-1
215s autopkgtest [10:29:23]: build not needed
216s autopkgtest [10:29:24]: test run-unit-test: preparing testbed
217s Reading package lists...
217s Building dependency tree...
217s Reading state information...
217s Starting pkgProblemResolver with broken count: 0
217s Starting 2 pkgProblemResolver with broken count: 0
217s Done
217s The following additional packages will be installed:
217s   fontconfig gcc-13-base libasan8 libatomic1 libblas3 libboost-dev
217s   libboost1.83-dev libcairo2 libdatrie1 libgcc-13-dev libgfortran5 libgomp1
217s   libgraphite2-3 libharfbuzz0b libice6 libitm1 liblapack3 libpango-1.0-0
217s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0
217s   libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtk8.6 libubsan1
217s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
217s   r-base-core r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri r-cran-brio
217s   r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
217s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
217s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
217s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
217s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
217s   r-cran-rematch2 r-cran-remotes r-cran-rlang r-cran-rprojroot r-cran-testthat
217s   r-cran-tibble r-cran-utf8 r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr
217s   unzip x11-common xdg-utils zip
217s Suggested packages:
217s   libboost-doc libboost1.83-doc libboost-atomic1.83-dev
217s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
217s   libboost-contract1.83-dev libboost-coroutine1.83-dev
217s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
217s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
217s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
217s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
217s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
217s   libboost-numpy1.83-dev libboost-program-options1.83-dev
217s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
217s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
217s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
217s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
217s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
217s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
217s   r-base-html r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-getopt
217s   r-cran-covr r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable
217s   r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales
217s   r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline
217s   r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-htmltools
217s   r-cran-purrr r-cran-tidyr
217s Recommended packages:
217s   r-recommended r-base-dev r-doc-html r-cran-covr r-cran-mockery
217s   r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
217s   r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-ggplot2
217s   r-cran-lattice r-cran-unitizer r-cran-dbi r-cran-dplyr r-cran-rsqlite
217s   r-cran-httr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse
217s   r-cran-lubridate r-cran-cpp11 r-cran-bitops r-cran-mathjaxr r-cran-mockr
217s   r-cran-codetools r-cran-curl r-cran-webfakes r-cran-pingr r-cran-brew
217s   r-cran-git2r r-cran-usethis r-cran-shiny r-cran-xml2 r-cran-data.table
217s   r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
217s   r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
217s   x11-utils x11-xserver-utils
217s The following NEW packages will be installed:
217s   autopkgtest-satdep fontconfig gcc-13-base libasan8 libatomic1 libblas3
217s   libboost-dev libboost1.83-dev libcairo2 libdatrie1 libgcc-13-dev
217s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libitm1
217s   liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
217s   libpaper-utils libpaper1 libpixman-1-0 libsm6 libstdc++-13-dev libtcl8.6
217s   libthai-data libthai0 libtk8.6 libubsan1 libxcb-render0 libxcb-shm0 libxft2
217s   libxrender1 libxss1 libxt6t64 littler r-base-core r-cran-bh r-cran-bigmemory
217s   r-cran-bigmemory.sri r-cran-brio r-cran-callr r-cran-cli r-cran-crayon
217s   r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi
217s   r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle r-cran-littler
217s   r-cran-magrittr r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
217s   r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
217s   r-cran-r6 r-cran-rcpp r-cran-rematch2 r-cran-remotes r-cran-rlang
217s   r-cran-rprojroot r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-uuid
217s   r-cran-vctrs r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip
218s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded.
218s Need to get 72.1 MB/72.1 MB of archives.
218s After this operation, 311 MB of additional disk space will be used.
218s Get:1 /tmp/autopkgtest.72NmtE/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B]
218s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB]
218s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13-base s390x 13.2.0-23ubuntu4 [48.9 kB]
218s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libasan8 s390x 14.1.0-1ubuntu1 [3003 kB]
218s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x libatomic1 s390x 14.1.0-1ubuntu1 [9378 B]
218s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB]
218s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB]
218s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libitm1 s390x 14.1.0-1ubuntu1 [31.1 kB]
218s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libubsan1 s390x 14.1.0-1ubuntu1 [1189 kB]
218s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu4 [1004 kB]
218s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu4 [2494 kB]
219s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libboost1.83-dev s390x 1.83.0-3ubuntu1 [10.7 MB]
219s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libboost-dev s390x 1.83.0.1ubuntu2 [4310 B]
219s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libpixman-1-0 s390x 0.42.2-1build1 [206 kB]
219s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
219s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
219s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
219s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libcairo2 s390x 1.18.0-3build1 [589 kB]
219s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
219s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB]
219s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libgraphite2-3 s390x 1.3.14-2build1 [80.0 kB]
219s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB]
219s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
219s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libice6 s390x 2:1.0.10-1build3 [44.8 kB]
219s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB]
219s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x libthai-data all 0.1.29-2build1 [158 kB]
219s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
219s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libpango-1.0-0 s390x 1.54.0+ds-1 [243 kB]
219s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libpangoft2-1.0-0 s390x 1.54.0+ds-1 [43.4 kB]
219s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libpangocairo-1.0-0 s390x 1.54.0+ds-1 [28.2 kB]
219s Get:31 http://ftpmaster.internal/ubuntu oracular/main s390x libpaper1 s390x 1.1.29build1 [13.4 kB]
219s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x libpaper-utils s390x 1.1.29build1 [8442 B]
219s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x libsm6 s390x 2:1.2.3-1build3 [17.7 kB]
219s Get:34 http://ftpmaster.internal/ubuntu oracular/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB]
219s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
219s Get:36 http://ftpmaster.internal/ubuntu oracular/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
219s Get:37 http://ftpmaster.internal/ubuntu oracular/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB]
219s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
219s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x zip s390x 3.0-13build1 [189 kB]
219s Get:40 http://ftpmaster.internal/ubuntu oracular/main s390x unzip s390x 6.0-28ubuntu5 [186 kB]
219s Get:41 http://ftpmaster.internal/ubuntu oracular/main s390x xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
219s Get:42 http://ftpmaster.internal/ubuntu oracular/universe s390x r-base-core s390x 4.4.1-1 [28.6 MB]
220s Get:43 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-littler s390x 0.3.20-1 [94.9 kB]
220s Get:44 http://ftpmaster.internal/ubuntu oracular/universe s390x littler all 0.3.20-1 [2486 B]
220s Get:45 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
220s Get:46 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB]
220s Get:47 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
220s Get:48 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-rcpp s390x 1.0.12-1 [1985 kB]
220s Get:49 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-uuid s390x 1.2-0-1 [48.7 kB]
220s Get:50 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x r-cran-bigmemory s390x 4.6.4-1 [505 kB]
220s Get:51 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
220s Get:52 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-ps s390x 1.7.6-1 [313 kB]
220s Get:53 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB]
220s Get:54 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-processx s390x 3.8.3-1 [364 kB]
220s Get:55 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
220s Get:56 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-cli s390x 3.6.2-1 [1382 kB]
220s Get:57 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-crayon all 1.5.2-1 [164 kB]
220s Get:58 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
220s Get:59 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
220s Get:60 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-digest s390x 0.6.35-1 [201 kB]
220s Get:61 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-evaluate all 0.23-1 [90.2 kB]
220s Get:62 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
220s Get:63 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-fs s390x 1.6.3+dfsg-1build2 [230 kB]
220s Get:64 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-glue s390x 1.7.0-1 [154 kB]
220s Get:65 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-jsonlite s390x 1.8.8+dfsg-1 [444 kB]
220s Get:66 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-rlang s390x 1.1.4-1 [1715 kB]
220s Get:67 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
220s Get:68 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
220s Get:69 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
220s Get:70 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
220s Get:71 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
220s Get:72 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-pkgbuild all 1.4.4-1 [212 kB]
220s Get:73 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
220s Get:74 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-rprojroot all 2.0.4-1 [124 kB]
220s Get:75 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-withr all 2.5.0-1 [225 kB]
220s Get:76 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-pkgload all 1.3.4-1 [207 kB]
220s Get:77 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
220s Get:78 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-tibble s390x 3.2.1+dfsg-2 [415 kB]
220s Get:79 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
220s Get:80 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB]
220s Get:81 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-waldo all 0.5.2-1build1 [120 kB]
220s Get:82 http://ftpmaster.internal/ubuntu oracular/universe s390x r-cran-testthat s390x 3.2.1-1 [1688 kB]
221s Preconfiguring packages ...
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221s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ...
221s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
221s Selecting previously unselected package gcc-13-base:s390x.
221s Preparing to unpack .../01-gcc-13-base_13.2.0-23ubuntu4_s390x.deb ...
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221s Selecting previously unselected package libasan8:s390x.
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221s Selecting previously unselected package libatomic1:s390x.
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221s Selecting previously unselected package libblas3:s390x.
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221s Selecting previously unselected package libubsan1:s390x.
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221s Selecting previously unselected package libstdc++-13-dev:s390x.
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221s Selecting previously unselected package libboost1.83-dev:s390x.
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224s Selecting previously unselected package libdatrie1:s390x.
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224s Selecting previously unselected package libgfortran5:s390x.
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224s Selecting previously unselected package libgraphite2-3:s390x.
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224s Selecting previously unselected package libharfbuzz0b:s390x.
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224s Selecting previously unselected package libice6:s390x.
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224s Selecting previously unselected package liblapack3:s390x.
224s Preparing to unpack .../23-liblapack3_3.12.0-3build1_s390x.deb ...
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224s Selecting previously unselected package libthai-data.
224s Preparing to unpack .../24-libthai-data_0.1.29-2build1_all.deb ...
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224s Selecting previously unselected package libthai0:s390x.
224s Preparing to unpack .../25-libthai0_0.1.29-2build1_s390x.deb ...
224s Unpacking libthai0:s390x (0.1.29-2build1) ...
224s Selecting previously unselected package libpango-1.0-0:s390x.
224s Preparing to unpack .../26-libpango-1.0-0_1.54.0+ds-1_s390x.deb ...
224s Unpacking libpango-1.0-0:s390x (1.54.0+ds-1) ...
224s Selecting previously unselected package libpangoft2-1.0-0:s390x.
224s Preparing to unpack .../27-libpangoft2-1.0-0_1.54.0+ds-1_s390x.deb ...
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224s Selecting previously unselected package libpangocairo-1.0-0:s390x.
224s Preparing to unpack .../28-libpangocairo-1.0-0_1.54.0+ds-1_s390x.deb ...
224s Unpacking libpangocairo-1.0-0:s390x (1.54.0+ds-1) ...
224s Selecting previously unselected package libpaper1:s390x.
224s Preparing to unpack .../29-libpaper1_1.1.29build1_s390x.deb ...
224s Unpacking libpaper1:s390x (1.1.29build1) ...
224s Selecting previously unselected package libpaper-utils.
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224s Selecting previously unselected package libsm6:s390x.
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224s Selecting previously unselected package libtcl8.6:s390x.
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225s Selecting previously unselected package libxft2:s390x.
225s Preparing to unpack .../33-libxft2_2.3.6-1build1_s390x.deb ...
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225s Selecting previously unselected package libxss1:s390x.
225s Preparing to unpack .../34-libxss1_1%3a1.2.3-1build3_s390x.deb ...
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225s Selecting previously unselected package libtk8.6:s390x.
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225s Selecting previously unselected package libxt6t64:s390x.
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225s Unpacking unzip (6.0-28ubuntu5) ...
225s Selecting previously unselected package xdg-utils.
225s Preparing to unpack .../39-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
225s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
225s Selecting previously unselected package r-base-core.
225s Preparing to unpack .../40-r-base-core_4.4.1-1_s390x.deb ...
225s Unpacking r-base-core (4.4.1-1) ...
225s Selecting previously unselected package r-cran-littler.
225s Preparing to unpack .../41-r-cran-littler_0.3.20-1_s390x.deb ...
225s Unpacking r-cran-littler (0.3.20-1) ...
225s Selecting previously unselected package littler.
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225s Unpacking r-cran-bh (1.84.0-1) ...
225s Selecting previously unselected package r-cran-bigmemory.sri.
225s Preparing to unpack .../44-r-cran-bigmemory.sri_0.1.8-1_all.deb ...
225s Unpacking r-cran-bigmemory.sri (0.1.8-1) ...
225s Selecting previously unselected package r-cran-pkgkitten.
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225s Unpacking r-cran-pkgkitten (0.2.3-1) ...
225s Selecting previously unselected package r-cran-rcpp.
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225s Unpacking r-cran-rcpp (1.0.12-1) ...
225s Selecting previously unselected package r-cran-uuid.
225s Preparing to unpack .../47-r-cran-uuid_1.2-0-1_s390x.deb ...
225s Unpacking r-cran-uuid (1.2-0-1) ...
225s Selecting previously unselected package r-cran-bigmemory.
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225s Unpacking r-cran-bigmemory (4.6.4-1) ...
225s Selecting previously unselected package r-cran-brio.
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225s Selecting previously unselected package r-cran-ps.
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225s Unpacking r-cran-ps (1.7.6-1) ...
225s Selecting previously unselected package r-cran-r6.
226s Preparing to unpack .../51-r-cran-r6_2.5.1-1_all.deb ...
226s Unpacking r-cran-r6 (2.5.1-1) ...
226s Selecting previously unselected package r-cran-processx.
226s Preparing to unpack .../52-r-cran-processx_3.8.3-1_s390x.deb ...
226s Unpacking r-cran-processx (3.8.3-1) ...
226s Selecting previously unselected package r-cran-callr.
226s Preparing to unpack .../53-r-cran-callr_3.7.6-1_all.deb ...
226s Unpacking r-cran-callr (3.7.6-1) ...
226s Selecting previously unselected package r-cran-cli.
226s Preparing to unpack .../54-r-cran-cli_3.6.2-1_s390x.deb ...
226s Unpacking r-cran-cli (3.6.2-1) ...
226s Selecting previously unselected package r-cran-crayon.
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226s Selecting previously unselected package r-cran-desc.
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226s Unpacking r-cran-desc (1.4.3-1) ...
226s Selecting previously unselected package r-cran-diffobj.
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226s Unpacking r-cran-diffobj (0.3.5-1) ...
226s Selecting previously unselected package r-cran-digest.
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226s Unpacking r-cran-digest (0.6.35-1) ...
226s Selecting previously unselected package r-cran-evaluate.
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226s Unpacking r-cran-evaluate (0.23-1) ...
226s Selecting previously unselected package r-cran-fansi.
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226s Selecting previously unselected package r-cran-fs.
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226s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
226s Selecting previously unselected package r-cran-glue.
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226s Selecting previously unselected package r-cran-jsonlite.
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226s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
226s Selecting previously unselected package r-cran-rlang.
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226s Selecting previously unselected package r-cran-lifecycle.
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226s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
226s Selecting previously unselected package r-cran-magrittr.
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226s Unpacking r-cran-magrittr (2.0.3-1) ...
226s Selecting previously unselected package r-cran-utf8.
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226s Unpacking r-cran-utf8 (1.2.4-1) ...
226s Selecting previously unselected package r-cran-vctrs.
226s Preparing to unpack .../68-r-cran-vctrs_0.6.5-1_s390x.deb ...
226s Unpacking r-cran-vctrs (0.6.5-1) ...
226s Selecting previously unselected package r-cran-pillar.
226s Preparing to unpack .../69-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
226s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
226s Selecting previously unselected package r-cran-pkgbuild.
226s Preparing to unpack .../70-r-cran-pkgbuild_1.4.4-1_all.deb ...
226s Unpacking r-cran-pkgbuild (1.4.4-1) ...
226s Selecting previously unselected package r-cran-pkgconfig.
226s Preparing to unpack .../71-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
226s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
226s Selecting previously unselected package r-cran-rprojroot.
226s Preparing to unpack .../72-r-cran-rprojroot_2.0.4-1_all.deb ...
226s Unpacking r-cran-rprojroot (2.0.4-1) ...
226s Selecting previously unselected package r-cran-withr.
226s Preparing to unpack .../73-r-cran-withr_2.5.0-1_all.deb ...
226s Unpacking r-cran-withr (2.5.0-1) ...
226s Selecting previously unselected package r-cran-pkgload.
226s Preparing to unpack .../74-r-cran-pkgload_1.3.4-1_all.deb ...
226s Unpacking r-cran-pkgload (1.3.4-1) ...
226s Selecting previously unselected package r-cran-praise.
226s Preparing to unpack .../75-r-cran-praise_1.0.0-4build1_all.deb ...
226s Unpacking r-cran-praise (1.0.0-4build1) ...
226s Selecting previously unselected package r-cran-tibble.
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226s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
226s Selecting previously unselected package r-cran-rematch2.
226s Preparing to unpack .../77-r-cran-rematch2_2.1.2-2build1_all.deb ...
226s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
226s Selecting previously unselected package r-cran-remotes.
226s Preparing to unpack .../78-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ...
226s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ...
226s Selecting previously unselected package r-cran-waldo.
226s Preparing to unpack .../79-r-cran-waldo_0.5.2-1build1_all.deb ...
226s Unpacking r-cran-waldo (0.5.2-1build1) ...
226s Selecting previously unselected package r-cran-testthat.
227s Preparing to unpack .../80-r-cran-testthat_3.2.1-1_s390x.deb ...
227s Unpacking r-cran-testthat (3.2.1-1) ...
227s Selecting previously unselected package autopkgtest-satdep.
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227s Unpacking autopkgtest-satdep (0) ...
227s Setting up libgraphite2-3:s390x (1.3.14-2build1) ...
227s Setting up libpixman-1-0:s390x (0.42.2-1build1) ...
227s Setting up libpaper1:s390x (1.1.29build1) ...
227s 
227s Creating config file /etc/papersize with new version
227s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
229s Regenerating fonts cache... done.
229s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
229s Setting up libdatrie1:s390x (0.2.13-3build1) ...
229s Setting up libxcb-render0:s390x (1.17.0-2) ...
229s Setting up unzip (6.0-28ubuntu5) ...
229s Setting up x11-common (1:7.7+23ubuntu3) ...
229s Setting up libxcb-shm0:s390x (1.17.0-2) ...
229s Setting up libpaper-utils (1.1.29build1) ...
230s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ...
230s Setting up libcairo2:s390x (1.18.0-3build1) ...
230s Setting up zip (3.0-13build1) ...
230s Setting up libblas3:s390x (3.12.0-3build1) ...
230s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
230s Setting up gcc-13-base:s390x (13.2.0-23ubuntu4) ...
230s Setting up libatomic1:s390x (14.1.0-1ubuntu1) ...
230s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ...
230s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ...
230s Setting up libubsan1:s390x (14.1.0-1ubuntu1) ...
230s Setting up libasan8:s390x (14.1.0-1ubuntu1) ...
230s Setting up libharfbuzz0b:s390x (8.3.0-2build2) ...
230s Setting up libthai-data (0.1.29-2build1) ...
230s Setting up libxss1:s390x (1:1.2.3-1build3) ...
230s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
230s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
230s Setting up libitm1:s390x (14.1.0-1ubuntu1) ...
230s Setting up libice6:s390x (2:1.0.10-1build3) ...
230s Setting up liblapack3:s390x (3.12.0-3build1) ...
230s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
230s Setting up libxft2:s390x (2.3.6-1build1) ...
230s Setting up libtk8.6:s390x (8.6.14-1build1) ...
230s Setting up libthai0:s390x (0.1.29-2build1) ...
230s Setting up libgcc-13-dev:s390x (13.2.0-23ubuntu4) ...
230s Setting up libsm6:s390x (2:1.2.3-1build3) ...
230s Setting up libstdc++-13-dev:s390x (13.2.0-23ubuntu4) ...
230s Setting up libboost1.83-dev:s390x (1.83.0-3ubuntu1) ...
230s Setting up libpango-1.0-0:s390x (1.54.0+ds-1) ...
230s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
230s Setting up libboost-dev:s390x (1.83.0.1ubuntu2) ...
230s Setting up libpangoft2-1.0-0:s390x (1.54.0+ds-1) ...
230s Setting up libpangocairo-1.0-0:s390x (1.54.0+ds-1) ...
230s Setting up r-base-core (4.4.1-1) ...
230s 
230s Creating config file /etc/R/Renviron with new version
230s Setting up r-cran-crayon (1.5.2-1) ...
230s Setting up r-cran-ps (1.7.6-1) ...
230s Setting up r-cran-remotes (2.4.2.1+dfsg-2) ...
230s Setting up r-cran-r6 (2.5.1-1) ...
230s Setting up r-cran-pkgkitten (0.2.3-1) ...
230s Setting up r-cran-magrittr (2.0.3-1) ...
230s Setting up r-cran-littler (0.3.20-1) ...
230s Setting up r-cran-bh (1.84.0-1) ...
230s Setting up r-cran-fs (1.6.3+dfsg-1build2) ...
230s Setting up r-cran-rcpp (1.0.12-1) ...
230s Setting up r-cran-brio (1.1.5-1) ...
230s Setting up r-cran-diffobj (0.3.5-1) ...
230s Setting up r-cran-bigmemory.sri (0.1.8-1) ...
230s Setting up r-cran-rlang (1.1.4-1) ...
230s Setting up littler (0.3.20-1) ...
230s Setting up r-cran-uuid (1.2-0-1) ...
230s Setting up r-cran-withr (2.5.0-1) ...
230s Setting up r-cran-processx (3.8.3-1) ...
230s Setting up r-cran-praise (1.0.0-4build1) ...
230s Setting up r-cran-digest (0.6.35-1) ...
230s Setting up r-cran-evaluate (0.23-1) ...
230s Setting up r-cran-bigmemory (4.6.4-1) ...
230s Setting up r-cran-fansi (1.0.5-1) ...
230s Setting up r-cran-glue (1.7.0-1) ...
230s Setting up r-cran-cli (3.6.2-1) ...
230s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
230s Setting up r-cran-rprojroot (2.0.4-1) ...
230s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
230s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
230s Setting up r-cran-utf8 (1.2.4-1) ...
230s Setting up r-cran-vctrs (0.6.5-1) ...
230s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
230s Setting up r-cran-callr (3.7.6-1) ...
230s Setting up r-cran-desc (1.4.3-1) ...
230s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
230s Setting up r-cran-pkgbuild (1.4.4-1) ...
230s Setting up r-cran-pkgload (1.3.4-1) ...
230s Setting up r-cran-rematch2 (2.1.2-2build1) ...
230s Setting up r-cran-waldo (0.5.2-1build1) ...
230s Setting up r-cran-testthat (3.2.1-1) ...
230s Setting up autopkgtest-satdep (0) ...
230s Processing triggers for man-db (2.12.1-2) ...
230s Processing triggers for install-info (7.1-3build2) ...
231s Processing triggers for libc-bin (2.39-0ubuntu9) ...
235s (Reading database ... 79126 files and directories currently installed.)
235s Removing autopkgtest-satdep (0) ...
235s autopkgtest [10:29:43]: test run-unit-test: [-----------------------
235s BEGIN TEST testthat.R
235s 
235s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
235s Copyright (C) 2024 The R Foundation for Statistical Computing
235s Platform: s390x-ibm-linux-gnu
235s 
235s R is free software and comes with ABSOLUTELY NO WARRANTY.
235s You are welcome to redistribute it under certain conditions.
235s Type 'license()' or 'licence()' for distribution details.
235s 
235s R is a collaborative project with many contributors.
235s Type 'contributors()' for more information and
235s 'citation()' on how to cite R or R packages in publications.
235s 
235s Type 'demo()' for some demos, 'help()' for on-line help, or
235s 'help.start()' for an HTML browser interface to help.
235s Type 'q()' to quit R.
235s 
236s > library(testthat)
236s > library(bigmemory)
236s > 
236s > test_check("bigmemory")
238s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
238s 
238s ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
238s • empty test (7): 'test_assignment.R:175:1', 'test_assignment.R:179:1',
238s   'test_assignment.R:183:1', 'test_assignment.R:187:1',
238s   'test_assignment.R:191:1', 'test_matrix_manips.R:3:1', 'test_mwhich.R:38:1'
238s 
238s ══ Failed tests ════════════════════════════════════════════════════════════════
238s ── Failure ('test_raw.R:31:3'): Making sure the 'char' matrix behaves like signed byte ──
238s mchar[1:3, 1] not equal to c(40, -123, NA).
238s 2/3 mismatches (average diff: NaN)
238s [2]  NA - -123 == NA
238s [3] 190 -   NA == NA
238s 
238s [ FAIL 1 | WARN 0 | SKIP 7 | PASS 189 ]
238s Error: Test failures
238s Execution halted
238s autopkgtest [10:29:46]: test run-unit-test: -----------------------]
239s run-unit-test        FAIL non-zero exit status 1
239s autopkgtest [10:29:47]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
239s autopkgtest [10:29:47]: test pkg-r-autopkgtest: preparing testbed
240s Reading package lists...
241s Building dependency tree...
241s Reading state information...
241s Starting pkgProblemResolver with broken count: 0
241s Starting 2 pkgProblemResolver with broken count: 0
241s Done
241s The following additional packages will be installed:
241s   build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu
241s   dctrl-tools g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13
241s   gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-13
241s   gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
241s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgfortran-13-dev libicu-dev
241s   libisl23 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev
241s   liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev
241s   libpcre2-posix3 libpkgconf3 libpng-dev libreadline-dev libtirpc-dev
241s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
241s Suggested packages:
241s   cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib
241s   gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison
241s   gdb gcc-doc gcc-13-multilib gdb-s390x-linux-gnu gfortran-multilib
241s   gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev
241s   liblapack-doc icu-doc liblzma-doc ncurses-doc readline-doc texlive-base
241s   texlive-latex-base texlive-plain-generic texlive-fonts-recommended
241s   texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
241s   texlive-latex-extra texinfo
241s Recommended packages:
241s   bzip2-doc libpng-tools
241s The following NEW packages will be installed:
241s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu
241s   cpp-s390x-linux-gnu dctrl-tools g++ g++-13 g++-13-s390x-linux-gnu
241s   g++-s390x-linux-gnu gcc gcc-13 gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu
241s   gfortran gfortran-13 gfortran-13-s390x-linux-gnu gfortran-s390x-linux-gnu
241s   icu-devtools libblas-dev libbz2-dev libcc1-0 libdeflate-dev
241s   libgfortran-13-dev libicu-dev libisl23 libjpeg-dev libjpeg-turbo8-dev
241s   libjpeg8-dev liblapack-dev liblzma-dev libmpc3 libncurses-dev libpcre2-16-0
241s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev
241s   libreadline-dev libtirpc-dev pkg-r-autopkgtest pkgconf pkgconf-bin
241s   r-base-dev zlib1g-dev
241s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
241s Need to get 75.1 MB/75.1 MB of archives.
241s After this operation, 240 MB of additional disk space will be used.
241s Get:1 /tmp/autopkgtest.72NmtE/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [736 B]
241s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libisl23 s390x 0.26-3build1 [713 kB]
242s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB]
242s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [9939 kB]
242s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-13 s390x 13.2.0-23ubuntu4 [1030 B]
242s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B]
242s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB]
242s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libcc1-0 s390x 14.1.0-1ubuntu1 [50.7 kB]
242s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [19.1 MB]
242s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13 s390x 13.2.0-23ubuntu4 [472 kB]
242s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B]
242s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B]
242s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [11.3 MB]
243s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x g++-13 s390x 13.2.0-23ubuntu4 [14.5 kB]
243s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B]
243s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B]
243s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
243s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
243s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran-13-dev s390x 13.2.0-23ubuntu4 [623 kB]
243s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x gfortran-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [10.4 MB]
243s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x gfortran-13 s390x 13.2.0-23ubuntu4 [11.7 kB]
243s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x gfortran-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1016 B]
243s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x gfortran s390x 4:13.2.0-7ubuntu1 [1174 B]
243s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x icu-devtools s390x 74.2-1ubuntu3 [223 kB]
243s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libblas-dev s390x 3.12.0-3build1 [239 kB]
243s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x libbz2-dev s390x 1.0.8-5.1 [39.4 kB]
243s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x libdeflate-dev s390x 1.20-1 [52.1 kB]
243s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libicu-dev s390x 74.2-1ubuntu3 [11.9 MB]
243s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libjpeg-turbo8-dev s390x 2.1.5-2ubuntu2 [284 kB]
243s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
243s Get:31 http://ftpmaster.internal/ubuntu oracular/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
243s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack-dev s390x 3.12.0-3build1 [5983 kB]
243s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x libncurses-dev s390x 6.5-2 [404 kB]
243s Get:34 http://ftpmaster.internal/ubuntu oracular/main s390x libpcre2-16-0 s390x 10.42-4ubuntu2 [233 kB]
243s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x libpcre2-32-0 s390x 10.42-4ubuntu2 [219 kB]
243s Get:36 http://ftpmaster.internal/ubuntu oracular/main s390x libpcre2-posix3 s390x 10.42-4ubuntu2 [6752 B]
243s Get:37 http://ftpmaster.internal/ubuntu oracular/main s390x libpcre2-dev s390x 10.42-4ubuntu2 [809 kB]
243s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x libpkgconf3 s390x 1.8.1-3 [30.8 kB]
244s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB]
244s Get:40 http://ftpmaster.internal/ubuntu oracular/main s390x libpng-dev s390x 1.6.43-5build1 [277 kB]
244s Get:41 http://ftpmaster.internal/ubuntu oracular/main s390x libreadline-dev s390x 8.2-4build1 [189 kB]
244s Get:42 http://ftpmaster.internal/ubuntu oracular/main s390x liblzma-dev s390x 5.6.1+really5.4.5-1 [184 kB]
244s Get:43 http://ftpmaster.internal/ubuntu oracular/main s390x pkgconf-bin s390x 1.8.1-3 [21.4 kB]
244s Get:44 http://ftpmaster.internal/ubuntu oracular/main s390x pkgconf s390x 1.8.1-3 [16.8 kB]
244s Get:45 http://ftpmaster.internal/ubuntu oracular/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
244s Get:46 http://ftpmaster.internal/ubuntu oracular/universe s390x r-base-dev all 4.4.1-1 [4338 B]
244s Get:47 http://ftpmaster.internal/ubuntu oracular/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
244s Fetched 75.1 MB in 3s (29.5 MB/s)
244s Selecting previously unselected package libisl23:s390x.
244s (Reading database ... 
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(Reading database ... 79126 files and directories currently installed.)
244s Preparing to unpack .../00-libisl23_0.26-3build1_s390x.deb ...
244s Unpacking libisl23:s390x (0.26-3build1) ...
244s Selecting previously unselected package libmpc3:s390x.
244s Preparing to unpack .../01-libmpc3_1.3.1-1build1_s390x.deb ...
244s Unpacking libmpc3:s390x (1.3.1-1build1) ...
244s Selecting previously unselected package cpp-13-s390x-linux-gnu.
244s Preparing to unpack .../02-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ...
244s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
244s Selecting previously unselected package cpp-13.
244s Preparing to unpack .../03-cpp-13_13.2.0-23ubuntu4_s390x.deb ...
244s Unpacking cpp-13 (13.2.0-23ubuntu4) ...
244s Selecting previously unselected package cpp-s390x-linux-gnu.
244s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ...
244s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
244s Selecting previously unselected package cpp.
244s Preparing to unpack .../05-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ...
244s Unpacking cpp (4:13.2.0-7ubuntu1) ...
244s Selecting previously unselected package libcc1-0:s390x.
244s Preparing to unpack .../06-libcc1-0_14.1.0-1ubuntu1_s390x.deb ...
244s Unpacking libcc1-0:s390x (14.1.0-1ubuntu1) ...
244s Selecting previously unselected package gcc-13-s390x-linux-gnu.
244s Preparing to unpack .../07-gcc-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ...
244s Unpacking gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
245s Selecting previously unselected package gcc-13.
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245s Unpacking gcc-13 (13.2.0-23ubuntu4) ...
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245s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
245s Selecting previously unselected package gcc.
245s Preparing to unpack .../10-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ...
245s Unpacking gcc (4:13.2.0-7ubuntu1) ...
245s Selecting previously unselected package g++-13-s390x-linux-gnu.
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245s Unpacking g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
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245s Unpacking g++-13 (13.2.0-23ubuntu4) ...
245s Selecting previously unselected package g++-s390x-linux-gnu.
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245s Preparing to unpack .../14-g++_4%3a13.2.0-7ubuntu1_s390x.deb ...
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245s Selecting previously unselected package libgfortran-13-dev:s390x.
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246s Selecting previously unselected package gfortran-13.
246s Preparing to unpack .../19-gfortran-13_13.2.0-23ubuntu4_s390x.deb ...
246s Unpacking gfortran-13 (13.2.0-23ubuntu4) ...
246s Selecting previously unselected package gfortran-s390x-linux-gnu.
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246s Unpacking gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
246s Selecting previously unselected package gfortran.
246s Preparing to unpack .../21-gfortran_4%3a13.2.0-7ubuntu1_s390x.deb ...
246s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
246s Selecting previously unselected package icu-devtools.
246s Preparing to unpack .../22-icu-devtools_74.2-1ubuntu3_s390x.deb ...
246s Unpacking icu-devtools (74.2-1ubuntu3) ...
246s Selecting previously unselected package libblas-dev:s390x.
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246s Unpacking libblas-dev:s390x (3.12.0-3build1) ...
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246s Unpacking libdeflate-dev:s390x (1.20-1) ...
246s Selecting previously unselected package libicu-dev:s390x.
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246s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
246s Selecting previously unselected package liblapack-dev:s390x.
246s Preparing to unpack .../30-liblapack-dev_3.12.0-3build1_s390x.deb ...
246s Unpacking liblapack-dev:s390x (3.12.0-3build1) ...
246s Selecting previously unselected package libncurses-dev:s390x.
246s Preparing to unpack .../31-libncurses-dev_6.5-2_s390x.deb ...
246s Unpacking libncurses-dev:s390x (6.5-2) ...
246s Selecting previously unselected package libpcre2-16-0:s390x.
246s Preparing to unpack .../32-libpcre2-16-0_10.42-4ubuntu2_s390x.deb ...
246s Unpacking libpcre2-16-0:s390x (10.42-4ubuntu2) ...
246s Selecting previously unselected package libpcre2-32-0:s390x.
246s Preparing to unpack .../33-libpcre2-32-0_10.42-4ubuntu2_s390x.deb ...
246s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu2) ...
246s Selecting previously unselected package libpcre2-posix3:s390x.
246s Preparing to unpack .../34-libpcre2-posix3_10.42-4ubuntu2_s390x.deb ...
246s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu2) ...
246s Selecting previously unselected package libpcre2-dev:s390x.
246s Preparing to unpack .../35-libpcre2-dev_10.42-4ubuntu2_s390x.deb ...
246s Unpacking libpcre2-dev:s390x (10.42-4ubuntu2) ...
246s Selecting previously unselected package libpkgconf3:s390x.
246s Preparing to unpack .../36-libpkgconf3_1.8.1-3_s390x.deb ...
246s Unpacking libpkgconf3:s390x (1.8.1-3) ...
246s Selecting previously unselected package zlib1g-dev:s390x.
246s Preparing to unpack .../37-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ...
246s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
246s Selecting previously unselected package libpng-dev:s390x.
246s Preparing to unpack .../38-libpng-dev_1.6.43-5build1_s390x.deb ...
246s Unpacking libpng-dev:s390x (1.6.43-5build1) ...
247s Selecting previously unselected package libreadline-dev:s390x.
247s Preparing to unpack .../39-libreadline-dev_8.2-4build1_s390x.deb ...
247s Unpacking libreadline-dev:s390x (8.2-4build1) ...
247s Selecting previously unselected package liblzma-dev:s390x.
247s Preparing to unpack .../40-liblzma-dev_5.6.1+really5.4.5-1_s390x.deb ...
247s Unpacking liblzma-dev:s390x (5.6.1+really5.4.5-1) ...
247s Selecting previously unselected package pkgconf-bin.
247s Preparing to unpack .../41-pkgconf-bin_1.8.1-3_s390x.deb ...
247s Unpacking pkgconf-bin (1.8.1-3) ...
247s Selecting previously unselected package pkgconf:s390x.
247s Preparing to unpack .../42-pkgconf_1.8.1-3_s390x.deb ...
247s Unpacking pkgconf:s390x (1.8.1-3) ...
247s Selecting previously unselected package libtirpc-dev:s390x.
247s Preparing to unpack .../43-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
247s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
247s Selecting previously unselected package r-base-dev.
247s Preparing to unpack .../44-r-base-dev_4.4.1-1_all.deb ...
247s Unpacking r-base-dev (4.4.1-1) ...
247s Selecting previously unselected package pkg-r-autopkgtest.
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247s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
247s Selecting previously unselected package autopkgtest-satdep.
247s Preparing to unpack .../46-2-autopkgtest-satdep.deb ...
247s Unpacking autopkgtest-satdep (0) ...
247s Setting up libjpeg-turbo8-dev:s390x (2.1.5-2ubuntu2) ...
247s Setting up libncurses-dev:s390x (6.5-2) ...
247s Setting up libreadline-dev:s390x (8.2-4build1) ...
247s Setting up libpcre2-16-0:s390x (10.42-4ubuntu2) ...
247s Setting up libpcre2-32-0:s390x (10.42-4ubuntu2) ...
247s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
247s Setting up libpkgconf3:s390x (1.8.1-3) ...
247s Setting up libmpc3:s390x (1.3.1-1build1) ...
247s Setting up icu-devtools (74.2-1ubuntu3) ...
247s Setting up pkgconf-bin (1.8.1-3) ...
247s Setting up liblzma-dev:s390x (5.6.1+really5.4.5-1) ...
247s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
247s Setting up libpcre2-posix3:s390x (10.42-4ubuntu2) ...
247s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
247s Setting up libisl23:s390x (0.26-3build1) ...
247s Setting up libgfortran-13-dev:s390x (13.2.0-23ubuntu4) ...
247s Setting up libdeflate-dev:s390x (1.20-1) ...
247s Setting up libicu-dev:s390x (74.2-1ubuntu3) ...
247s Setting up libcc1-0:s390x (14.1.0-1ubuntu1) ...
247s Setting up libblas-dev:s390x (3.12.0-3build1) ...
247s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
247s Setting up dctrl-tools (2.24-3build3) ...
247s Setting up libbz2-dev:s390x (1.0.8-5.1) ...
247s Setting up libpcre2-dev:s390x (10.42-4ubuntu2) ...
247s Setting up libpng-dev:s390x (1.6.43-5build1) ...
247s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
247s Setting up pkgconf:s390x (1.8.1-3) ...
247s Setting up cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
247s Setting up gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
247s Setting up g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
247s Setting up gcc-13 (13.2.0-23ubuntu4) ...
247s Setting up liblapack-dev:s390x (3.12.0-3build1) ...
247s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
247s Setting up gfortran-13-s390x-linux-gnu (13.2.0-23ubuntu4) ...
247s Setting up g++-13 (13.2.0-23ubuntu4) ...
247s Setting up cpp-13 (13.2.0-23ubuntu4) ...
247s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
247s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
247s Setting up gfortran-13 (13.2.0-23ubuntu4) ...
247s Setting up cpp (4:13.2.0-7ubuntu1) ...
247s Setting up gfortran-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
247s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ...
247s Setting up gcc (4:13.2.0-7ubuntu1) ...
247s Setting up g++ (4:13.2.0-7ubuntu1) ...
247s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
247s Setting up build-essential (12.10ubuntu1) ...
247s Setting up gfortran (4:13.2.0-7ubuntu1) ...
247s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
247s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
247s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
247s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
247s Setting up r-base-dev (4.4.1-1) ...
247s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
247s Setting up autopkgtest-satdep (0) ...
247s Processing triggers for man-db (2.12.1-2) ...
248s Processing triggers for install-info (7.1-3build2) ...
248s Processing triggers for libc-bin (2.39-0ubuntu9) ...
250s (Reading database ... 80129 files and directories currently installed.)
250s Removing autopkgtest-satdep (0) ...
251s autopkgtest [10:29:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
251s autopkgtest [10:29:59]: test pkg-r-autopkgtest: [-----------------------
252s Test: Try to load the R library bigmemory
252s 
252s R version 4.4.1 (2024-06-14) -- "Race for Your Life"
252s Copyright (C) 2024 The R Foundation for Statistical Computing
252s Platform: s390x-ibm-linux-gnu
252s 
252s R is free software and comes with ABSOLUTELY NO WARRANTY.
252s You are welcome to redistribute it under certain conditions.
252s Type 'license()' or 'licence()' for distribution details.
252s 
252s R is a collaborative project with many contributors.
252s Type 'contributors()' for more information and
252s 'citation()' on how to cite R or R packages in publications.
252s 
252s Type 'demo()' for some demos, 'help()' for on-line help, or
252s 'help.start()' for an HTML browser interface to help.
252s Type 'q()' to quit R.
252s 
252s > library('bigmemory')
252s > 
252s > 
252s Other tests are currently unsupported!
252s They will be progressively added.
252s autopkgtest [10:30:00]: test pkg-r-autopkgtest: -----------------------]
253s autopkgtest [10:30:01]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
253s pkg-r-autopkgtest    PASS
253s autopkgtest [10:30:01]: @@@@@@@@@@@@@@@@@@@@ summary
253s run-unit-test        FAIL non-zero exit status 1
253s pkg-r-autopkgtest    PASS
268s nova [W] Using flock in scalingstack-bos01-s390x
268s Creating nova instance adt-oracular-s390x-r-cran-bigmemory-20240616-102548-juju-7f2275-prod-proposed-migration-environment-2-347f356d-5911-4349-b28a-29d0c6905633 from image adt/ubuntu-oracular-s390x-server-20240616.img (UUID d6f70b60-e0c1-480d-8231-cedbbc2f917e)...