0s autopkgtest [09:17:22]: starting date and time: 2024-07-08 09:17:22+0000 0s autopkgtest [09:17:22]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [09:17:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mgstwoj1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade q2-taxa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-7.secgroup --name adt-oracular-s390x-q2-taxa-20240708-091722-juju-7f2275-prod-proposed-migration-environment-2-c8a08724-5d43-4358-9925-08b21502bd3b --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 61s autopkgtest [09:18:23]: testbed dpkg architecture: s390x 61s autopkgtest [09:18:23]: testbed apt version: 2.9.6 61s autopkgtest [09:18:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 62s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 62s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB] 62s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 62s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 62s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 62s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [82.5 kB] 62s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2548 B] 62s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 62s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 62s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [327 kB] 62s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8624 B] 62s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 62s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 63s Fetched 957 kB in 1s (1354 kB/s) 63s Reading package lists... 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 65s Calculating upgrade... 65s The following packages will be upgraded: 65s fuse3 libfuse3-3 65s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 65s Need to get 108 kB of archives. 65s After this operation, 4096 B disk space will be freed. 65s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x fuse3 s390x 3.14.0-6 [26.2 kB] 66s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libfuse3-3 s390x 3.14.0-6 [81.9 kB] 66s Fetched 108 kB in 0s (233 kB/s) 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54700 files and directories currently installed.) 66s Preparing to unpack .../fuse3_3.14.0-6_s390x.deb ... 66s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 66s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 66s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 66s Preparing to unpack .../libfuse3-3_3.14.0-6_s390x.deb ... 66s Unpacking libfuse3-3:s390x (3.14.0-6) over (3.14.0-5build1) ... 66s Setting up libfuse3-3:s390x (3.14.0-6) ... 66s Setting up fuse3 (3.14.0-6) ... 66s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 66s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 66s update-initramfs: deferring update (trigger activated) 66s Processing triggers for libc-bin (2.39-0ubuntu9) ... 66s Processing triggers for man-db (2.12.1-2) ... 67s Processing triggers for initramfs-tools (0.142ubuntu29) ... 67s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 67s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 71s Using config file '/etc/zipl.conf' 71s Building bootmap in '/boot' 71s Adding IPL section 'ubuntu' (default) 71s Preparing boot device for LD-IPL: vda (0000). 71s Done. 71s Reading package lists... 72s Building dependency tree... 72s Reading state information... 72s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 73s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Calculating upgrade... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 74s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 74s autopkgtest [09:18:36]: rebooting testbed after setup commands that affected boot 78s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 100s autopkgtest [09:19:02]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 103s autopkgtest [09:19:05]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-taxa 104s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (dsc) [2504 B] 104s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (tar) [234 kB] 104s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (diff) [7856 B] 104s gpgv: Signature made Mon Jun 3 18:53:13 2024 UTC 104s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 104s gpgv: issuer "athos.ribeiro@canonical.com" 104s gpgv: Can't check signature: No public key 104s dpkg-source: warning: cannot verify inline signature for ./q2-taxa_2024.2.0+dfsg-1ubuntu1.dsc: no acceptable signature found 104s autopkgtest [09:19:06]: testing package q2-taxa version 2024.2.0+dfsg-1ubuntu1 105s autopkgtest [09:19:07]: build not needed 105s autopkgtest [09:19:07]: test run-unit-test: preparing testbed 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Starting pkgProblemResolver with broken count: 1 106s Starting 2 pkgProblemResolver with broken count: 1 106s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 106s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 106s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 106s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 106s Re-Instated libaec0:s390x 106s Re-Instated libsz2:s390x 106s Re-Instated libhdf5-103-1t64:s390x 106s Re-Instated libhdf5-hl-100t64:s390x 106s Re-Instated liblzf1:s390x 106s Re-Instated python3-h5py-serial:s390x 106s Re-Instated python3-h5py:s390x 106s Re-Instated liblbfgsb0:s390x 106s Re-Instated python3-scipy:s390x 106s Re-Instated python3-biom-format:s390x 106s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 106s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 106s Re-Instated libyajl2:s390x 106s Re-Instated python3-ijson:s390x 106s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 106s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 106s Re-Instated libopenblas0-pthread:s390x 106s Re-Instated libopenblas0:s390x 106s Done 106s Some packages could not be installed. This may mean that you have 106s requested an impossible situation or if you are using the unstable 106s distribution that some required packages have not yet been created 106s or been moved out of Incoming. 106s The following information may help to resolve the situation: 106s 106s The following packages have unmet dependencies: 107s q2-types : Depends: python3-skbio but it is not installable 107s E: Unable to correct problems, you have held broken packages. 107s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 1 107s Starting 2 pkgProblemResolver with broken count: 1 107s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 107s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 107s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 107s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 107s Re-Instated libaec0:s390x 107s Re-Instated libsz2:s390x 107s Re-Instated libhdf5-103-1t64:s390x 107s Re-Instated libhdf5-hl-100t64:s390x 107s Re-Instated liblzf1:s390x 107s Re-Instated python3-h5py-serial:s390x 107s Re-Instated python3-h5py:s390x 107s Re-Instated liblbfgsb0:s390x 107s Re-Instated python3-scipy:s390x 107s Re-Instated python3-biom-format:s390x 107s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 107s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 107s Re-Instated libyajl2:s390x 107s Re-Instated python3-ijson:s390x 107s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 107s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 107s Re-Instated libopenblas0-pthread:s390x 107s Re-Instated libopenblas0:s390x 107s Done 107s Some packages could not be installed. This may mean that you have 107s requested an impossible situation or if you are using the unstable 107s distribution that some required packages have not yet been created 107s or been moved out of Incoming. 107s The following information may help to resolve the situation: 107s 107s The following packages have unmet dependencies: 108s q2-types : Depends: python3-skbio but it is not installable 108s E: Unable to correct problems, you have held broken packages. 108s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Starting pkgProblemResolver with broken count: 1 108s Starting 2 pkgProblemResolver with broken count: 1 108s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 108s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 108s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 108s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 108s Re-Instated libaec0:s390x 108s Re-Instated libsz2:s390x 108s Re-Instated libhdf5-103-1t64:s390x 108s Re-Instated libhdf5-hl-100t64:s390x 108s Re-Instated liblzf1:s390x 108s Re-Instated python3-h5py-serial:s390x 108s Re-Instated python3-h5py:s390x 108s Re-Instated liblbfgsb0:s390x 108s Re-Instated python3-scipy:s390x 108s Re-Instated python3-biom-format:s390x 108s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 108s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 108s Re-Instated libyajl2:s390x 108s Re-Instated python3-ijson:s390x 108s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 108s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 108s Re-Instated libopenblas0-pthread:s390x 108s Re-Instated libopenblas0:s390x 108s Done 108s Some packages could not be installed. This may mean that you have 108s requested an impossible situation or if you are using the unstable 108s distribution that some required packages have not yet been created 108s or been moved out of Incoming. 108s The following information may help to resolve the situation: 108s 108s The following packages have unmet dependencies: 108s q2-types : Depends: python3-skbio but it is not installable 108s E: Unable to correct problems, you have held broken packages. 108s autopkgtest [09:19:10]: @@@@@@@@@@@@@@@@@@@@ summary 108s run-unit-test SKIP installation fails and skip-not-installable set 108s run-unit-test SKIP installation fails and skip-not-installable set 120s nova [W] Using flock in scalingstack-bos02-s390x 120s Creating nova instance adt-oracular-s390x-q2-taxa-20240708-091722-juju-7f2275-prod-proposed-migration-environment-2-c8a08724-5d43-4358-9925-08b21502bd3b from image adt/ubuntu-oracular-s390x-server-20240707.img (UUID 29599ff8-3ecc-44d5-aba8-57056276a828)...