0s autopkgtest [09:17:05]: starting date and time: 2024-07-08 09:17:05+0000 0s autopkgtest [09:17:05]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [09:17:05]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3v2dtmz4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade q2-quality-filter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-s390x-16.secgroup --name adt-oracular-s390x-q2-quality-filter-20240708-091705-juju-7f2275-prod-proposed-migration-environment-3-36d4761a-86a6-416d-8a04-ab39aa09e4e0 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 446s autopkgtest [09:24:31]: testbed dpkg architecture: s390x 446s autopkgtest [09:24:31]: testbed apt version: 2.9.6 446s autopkgtest [09:24:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup 447s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 448s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 448s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 448s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB] 449s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 449s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [82.5 kB] 450s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2548 B] 450s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 450s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 450s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [327 kB] 450s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8624 B] 450s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 450s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 451s Fetched 957 kB in 3s (292 kB/s) 451s Reading package lists... 453s Reading package lists... 454s Building dependency tree... 454s Reading state information... 454s Calculating upgrade... 454s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 454s Reading package lists... 454s Building dependency tree... 454s Reading state information... 454s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 455s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 455s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB] 455s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 455s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 456s Get:5 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.3 MB] 461s Get:6 http://ftpmaster.internal/ubuntu oracular/main Sources [1386 kB] 461s Get:7 http://ftpmaster.internal/ubuntu oracular/multiverse Sources [301 kB] 461s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1336 kB] 461s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.6 MB] 462s Get:10 http://ftpmaster.internal/ubuntu oracular/multiverse s390x Packages [167 kB] 465s Fetched 38.2 MB in 11s (3579 kB/s) 466s Reading package lists... 466s Reading package lists... 467s Building dependency tree... 467s Reading state information... 467s Calculating upgrade... 467s The following packages will be upgraded: 467s fuse3 libfuse3-3 467s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 467s Need to get 108 kB of archives. 467s After this operation, 4096 B disk space will be freed. 467s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x fuse3 s390x 3.14.0-6 [26.2 kB] 467s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libfuse3-3 s390x 3.14.0-6 [81.9 kB] 468s Fetched 108 kB in 0s (305 kB/s) 468s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54700 files and directories currently installed.) 468s Preparing to unpack .../fuse3_3.14.0-6_s390x.deb ... 468s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 468s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 468s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 468s Preparing to unpack .../libfuse3-3_3.14.0-6_s390x.deb ... 468s Unpacking libfuse3-3:s390x (3.14.0-6) over (3.14.0-5build1) ... 468s Setting up libfuse3-3:s390x (3.14.0-6) ... 468s Setting up fuse3 (3.14.0-6) ... 468s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 468s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 468s update-initramfs: deferring update (trigger activated) 468s Processing triggers for libc-bin (2.39-0ubuntu9) ... 468s Processing triggers for man-db (2.12.1-2) ... 471s Processing triggers for initramfs-tools (0.142ubuntu29) ... 471s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 471s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 477s Using config file '/etc/zipl.conf' 477s Building bootmap in '/boot' 477s Adding IPL section 'ubuntu' (default) 477s Preparing boot device for LD-IPL: vda (0000). 477s Done. 477s Reading package lists... 477s Building dependency tree... 477s Reading state information... 478s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 478s autopkgtest [09:25:03]: rebooting testbed after setup commands that affected boot 482s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 505s autopkgtest [09:25:30]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 508s autopkgtest [09:25:33]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-quality-filter 512s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (dsc) [2421 B] 512s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (tar) [257 kB] 512s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (diff) [7140 B] 521s gpgv: Signature made Mon Jun 3 19:34:06 2024 UTC 521s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 521s gpgv: issuer "athos.ribeiro@canonical.com" 521s gpgv: Can't check signature: No public key 521s dpkg-source: warning: cannot verify inline signature for ./q2-quality-filter_2024.2.0-1ubuntu1.dsc: no acceptable signature found 523s autopkgtest [09:25:48]: testing package q2-quality-filter version 2024.2.0-1ubuntu1 524s autopkgtest [09:25:49]: build not needed 524s autopkgtest [09:25:49]: test run-unit-test: preparing testbed 525s Reading package lists... 525s Building dependency tree... 525s Reading state information... 525s Starting pkgProblemResolver with broken count: 1 525s Starting 2 pkgProblemResolver with broken count: 1 525s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 525s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 525s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 525s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 3 525s Re-Instated libaec0:s390x 525s Re-Instated libsz2:s390x 525s Re-Instated libhdf5-103-1t64:s390x 525s Re-Instated libhdf5-hl-100t64:s390x 525s Re-Instated liblzf1:s390x 525s Re-Instated python3-h5py-serial:s390x 525s Re-Instated python3-h5py:s390x 525s Re-Instated liblbfgsb0:s390x 525s Re-Instated python3-scipy:s390x 525s Re-Instated python3-biom-format:s390x 525s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 525s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 3 525s Re-Instated libyajl2:s390x 525s Re-Instated python3-ijson:s390x 525s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 525s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 3 525s Re-Instated libopenblas0-pthread:s390x 525s Re-Instated libopenblas0:s390x 525s Done 525s Some packages could not be installed. This may mean that you have 525s requested an impossible situation or if you are using the unstable 525s distribution that some required packages have not yet been created 525s or been moved out of Incoming. 525s The following information may help to resolve the situation: 525s 525s The following packages have unmet dependencies: 526s q2-types : Depends: python3-skbio but it is not installable 526s E: Unable to correct problems, you have held broken packages. 526s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed 526s Reading package lists... 527s Building dependency tree... 527s Reading state information... 527s Starting pkgProblemResolver with broken count: 1 527s Starting 2 pkgProblemResolver with broken count: 1 527s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 527s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 527s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 527s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 3 527s Re-Instated libaec0:s390x 527s Re-Instated libsz2:s390x 527s Re-Instated libhdf5-103-1t64:s390x 527s Re-Instated libhdf5-hl-100t64:s390x 527s Re-Instated liblzf1:s390x 527s Re-Instated python3-h5py-serial:s390x 527s Re-Instated python3-h5py:s390x 527s Re-Instated liblbfgsb0:s390x 527s Re-Instated python3-scipy:s390x 527s Re-Instated python3-biom-format:s390x 527s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 527s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 3 527s Re-Instated libyajl2:s390x 527s Re-Instated python3-ijson:s390x 527s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 527s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 3 527s Re-Instated libopenblas0-pthread:s390x 527s Re-Instated libopenblas0:s390x 527s Done 527s Some packages could not be installed. This may mean that you have 527s requested an impossible situation or if you are using the unstable 527s distribution that some required packages have not yet been created 527s or been moved out of Incoming. 527s The following information may help to resolve the situation: 527s 527s The following packages have unmet dependencies: 527s q2-types : Depends: python3-skbio but it is not installable 527s E: Unable to correct problems, you have held broken packages. 527s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 527s Reading package lists... 527s Building dependency tree... 527s Reading state information... 527s Starting pkgProblemResolver with broken count: 1 527s Starting 2 pkgProblemResolver with broken count: 1 527s Investigating (0) q2-types:s390x < none -> 2024.2.0-1ubuntu1 @un puN Ib > 527s Broken q2-types:s390x Depends on python3-skbio:s390x < none @un H > 527s Broken q2-types:s390x Depends on python3-biom-format:s390x < none | 2.1.16-1 @un uH > 527s Considering python3-biom-format:s390x 1 as a solution to q2-types:s390x 2 527s Re-Instated libaec0:s390x 527s Re-Instated libsz2:s390x 527s Re-Instated libhdf5-103-1t64:s390x 527s Re-Instated libhdf5-hl-100t64:s390x 527s Re-Instated liblzf1:s390x 527s Re-Instated python3-h5py-serial:s390x 527s Re-Instated python3-h5py:s390x 527s Re-Instated liblbfgsb0:s390x 527s Re-Instated python3-scipy:s390x 527s Re-Instated python3-biom-format:s390x 527s Broken q2-types:s390x Depends on python3-ijson:s390x < none | 3.3.0-1 @un uH > 527s Considering python3-ijson:s390x 1 as a solution to q2-types:s390x 2 527s Re-Instated libyajl2:s390x 527s Re-Instated python3-ijson:s390x 527s Broken q2-types:s390x Depends on libopenblas0:s390x < none | 0.3.27+ds-2 @un uH > 527s Considering libopenblas0:s390x 1 as a solution to q2-types:s390x 2 527s Re-Instated libopenblas0-pthread:s390x 527s Re-Instated libopenblas0:s390x 527s Done 527s Some packages could not be installed. This may mean that you have 527s requested an impossible situation or if you are using the unstable 527s distribution that some required packages have not yet been created 527s or been moved out of Incoming. 527s The following information may help to resolve the situation: 527s 527s The following packages have unmet dependencies: 528s q2-types : Depends: python3-skbio but it is not installable 528s E: Unable to correct problems, you have held broken packages. 528s run-unit-test SKIP installation fails and skip-not-installable set 528s autopkgtest [09:25:53]: @@@@@@@@@@@@@@@@@@@@ summary 528s run-unit-test SKIP installation fails and skip-not-installable set 532s nova [W] Using flock in scalingstack-bos02-s390x 532s Creating nova instance adt-oracular-s390x-q2-quality-filter-20240708-091705-juju-7f2275-prod-proposed-migration-environment-3-36d4761a-86a6-416d-8a04-ab39aa09e4e0 from image adt/ubuntu-oracular-s390x-server-20240707.img (UUID 29599ff8-3ecc-44d5-aba8-57056276a828)...