0s autopkgtest [02:41:18]: starting date and time: 2024-06-08 02:41:18+0000 0s autopkgtest [02:41:18]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [02:41:18]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.491m_kxq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-5.secgroup --name adt-oracular-s390x-python-skbio-20240608-024117-juju-7f2275-prod-proposed-migration-environment-3-5d882311-1175-4a3c-9a73-b628a8d3b222 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 122s autopkgtest [02:43:20]: testbed dpkg architecture: s390x 122s autopkgtest [02:43:20]: testbed apt version: 2.9.3 122s autopkgtest [02:43:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 123s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 123s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 123s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [333 kB] 123s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 123s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2864 B] 123s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [47.8 kB] 123s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1860 B] 123s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [258 kB] 123s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1768 B] 123s Fetched 808 kB in 1s (1105 kB/s) 123s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Calculating upgrade... 127s The following packages will be upgraded: 127s debianutils libheif-plugin-aomdec libheif-plugin-aomenc 127s libheif-plugin-libde265 libheif1 libnetplan1 liburcu8t64 netplan-generator 127s netplan.io python3-netplan 127s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 758 kB of archives. 127s After this operation, 48.1 kB disk space will be freed. 127s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x debianutils s390x 5.18 [90.2 kB] 127s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x netplan-generator s390x 1.0-3ubuntu1 [59.2 kB] 127s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x python3-netplan s390x 1.0-3ubuntu1 [22.9 kB] 127s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x netplan.io s390x 1.0-3ubuntu1 [65.8 kB] 127s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x libnetplan1 s390x 1.0-3ubuntu1 [125 kB] 127s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomdec s390x 1.17.6-3 [10.1 kB] 127s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomenc s390x 1.17.6-3 [15.1 kB] 127s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libheif1 s390x 1.17.6-3 [295 kB] 127s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-libde265 s390x 1.17.6-3 [8172 B] 127s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x liburcu8t64 s390x 0.14.0-4 [66.5 kB] 128s Fetched 758 kB in 1s (1479 kB/s) 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 128s Preparing to unpack .../debianutils_5.18_s390x.deb ... 128s Unpacking debianutils (5.18) over (5.17build1) ... 128s Setting up debianutils (5.18) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 128s Preparing to unpack .../0-netplan-generator_1.0-3ubuntu1_s390x.deb ... 128s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 128s Unpacking netplan-generator (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 128s Preparing to unpack .../1-python3-netplan_1.0-3ubuntu1_s390x.deb ... 128s Unpacking python3-netplan (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 128s Preparing to unpack .../2-netplan.io_1.0-3ubuntu1_s390x.deb ... 128s Unpacking netplan.io (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 128s Preparing to unpack .../3-libnetplan1_1.0-3ubuntu1_s390x.deb ... 128s Unpacking libnetplan1:s390x (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 128s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-3_s390x.deb ... 128s Unpacking libheif-plugin-aomdec:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-3_s390x.deb ... 128s Unpacking libheif-plugin-aomenc:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../6-libheif1_1.17.6-3_s390x.deb ... 128s Unpacking libheif1:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-3_s390x.deb ... 128s Unpacking libheif-plugin-libde265:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../8-liburcu8t64_0.14.0-4_s390x.deb ... 128s Unpacking liburcu8t64:s390x (0.14.0-4) over (0.14.0-3.1build1) ... 128s Setting up liburcu8t64:s390x (0.14.0-4) ... 128s Setting up libnetplan1:s390x (1.0-3ubuntu1) ... 128s Setting up python3-netplan (1.0-3ubuntu1) ... 128s Setting up netplan-generator (1.0-3ubuntu1) ... 128s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 128s Setting up netplan.io (1.0-3ubuntu1) ... 128s Setting up libheif-plugin-aomdec:s390x (1.17.6-3) ... 128s Setting up libheif-plugin-libde265:s390x (1.17.6-3) ... 128s Setting up libheif1:s390x (1.17.6-3) ... 128s Setting up libheif-plugin-aomenc:s390x (1.17.6-3) ... 128s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 128s Processing triggers for man-db (2.12.1-1) ... 129s Processing triggers for dbus (1.14.10-4ubuntu4) ... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 132s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Calculating upgrade... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s autopkgtest [02:43:34]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 137s autopkgtest [02:43:35]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 139s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (dsc) [2803 B] 139s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (tar) [3559 kB] 139s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (diff) [15.7 kB] 139s gpgv: Signature made Wed Apr 10 15:30:06 2024 UTC 139s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4build1.dsc: no acceptable signature found 139s autopkgtest [02:43:37]: testing package python-skbio version 0.5.9-4build1 139s autopkgtest [02:43:37]: build not needed 145s autopkgtest [02:43:43]: test import-skbio: preparing testbed 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Starting pkgProblemResolver with broken count: 1 147s Starting 2 pkgProblemResolver with broken count: 1 147s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 147s Broken autopkgtest-satdep:s390x Depends on python3-skbio:s390x < none @un H > 147s Broken autopkgtest-satdep:s390x Depends on python3-pytest:s390x < none | 8.2.2-1ubuntu1 @un uH > 147s Considering python3-pytest:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 147s Re-Instated python3-iniconfig:s390x 147s Re-Instated python3-packaging:s390x 147s Re-Instated python3-pluggy:s390x 147s Re-Instated python3-pytest:s390x 147s Done 147s Some packages could not be installed. This may mean that you have 147s requested an impossible situation or if you are using the unstable 147s distribution that some required packages have not yet been created 147s or been moved out of Incoming. 147s The following information may help to resolve the situation: 147s 147s The following packages have unmet dependencies: 147s autopkgtest-satdep : Depends: python3-skbio but it is not installable 147s E: Unable to correct problems, you have held broken packages. 147s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 1 148s Starting 2 pkgProblemResolver with broken count: 1 148s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 148s Broken autopkgtest-satdep:s390x Depends on python3-skbio:s390x < none @un H > 148s Broken autopkgtest-satdep:s390x Depends on python3-pytest:s390x < none | 8.2.2-1ubuntu1 @un uH > 148s Considering python3-pytest:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 148s Re-Instated python3-iniconfig:s390x 148s Re-Instated python3-packaging:s390x 148s Re-Instated python3-pluggy:s390x 148s Re-Instated python3-pytest:s390x 148s Done 148s Some packages could not be installed. This may mean that you have 148s requested an impossible situation or if you are using the unstable 148s distribution that some required packages have not yet been created 148s or been moved out of Incoming. 148s The following information may help to resolve the situation: 148s 148s The following packages have unmet dependencies: 148s autopkgtest-satdep : Depends: python3-skbio but it is not installable 148s E: Unable to correct problems, you have held broken packages. 148s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Package python3-skbio is not available, but is referred to by another package. 149s This may mean that the package is missing, has been obsoleted, or 149s is only available from another source 149s 149s E: Package 'python3-skbio' has no installation candidate 149s autopkgtest [02:43:47]: test testsuite: preparing testbed 149s import-skbio FAIL badpkg 149s blame: python-skbio 149s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 151s Starting pkgProblemResolver with broken count: 1 151s Starting 2 pkgProblemResolver with broken count: 1 151s Investigating (0) autopkgtest-satdep:s390x < none -> 0 @un puN Ib > 151s Broken autopkgtest-satdep:s390x Depends on python3-skbio:s390x < none @un H > 151s Broken autopkgtest-satdep:s390x Depends on python3-pytest:s390x < none | 8.2.2-1ubuntu1 @un uH > 151s Considering python3-pytest:s390x 1 as a solution to autopkgtest-satdep:s390x 9998 151s Re-Instated python3-iniconfig:s390x 151s Re-Instated python3-packaging:s390x 151s Re-Instated python3-pluggy:s390x 151s Re-Instated python3-pytest:s390x 151s Done 151s Some packages could not be installed. This may mean that you have 151s requested an impossible situation or if you are using the unstable 151s distribution that some required packages have not yet been created 151s or been moved out of Incoming. 151s The following information may help to resolve the situation: 151s 151s The following packages have unmet dependencies: 151s autopkgtest-satdep : Depends: python3-skbio but it is not installable 151s E: Unable to correct problems, you have held broken packages. 151s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 151s Package python3-skbio is not available, but is referred to by another package. 151s This may mean that the package is missing, has been obsoleted, or 151s is only available from another source 151s 151s E: Package 'python3-skbio' has no installation candidate 151s testsuite FAIL badpkg 151s blame: python-skbio 151s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 151s autopkgtest [02:43:49]: @@@@@@@@@@@@@@@@@@@@ summary 151s import-skbio FAIL badpkg 151s blame: python-skbio 151s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 151s testsuite FAIL badpkg 151s blame: python-skbio 151s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 164s nova [W] Using flock in scalingstack-bos01-s390x 164s flock: timeout while waiting to get lock 164s Creating nova instance adt-oracular-s390x-python-skbio-20240608-024117-juju-7f2275-prod-proposed-migration-environment-3-5d882311-1175-4a3c-9a73-b628a8d3b222 from image adt/ubuntu-oracular-s390x-server-20240607.img (UUID 7eeb2415-a1eb-49f2-b205-8690074843ed)...