0s autopkgtest [13:16:03]: starting date and time: 2024-07-13 13:16:03+0000 0s autopkgtest [13:16:03]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [13:16:03]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8ncwx3g9/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-15.secgroup --name adt-oracular-s390x-python-pot-20240713-131603-juju-7f2275-prod-proposed-migration-environment-3-7b27a60f-5e03-4829-85a9-dc3f76b3e1ef --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 114s autopkgtest [13:17:57]: testbed dpkg architecture: s390x 114s autopkgtest [13:17:57]: testbed apt version: 2.9.6 114s autopkgtest [13:17:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 115s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 115s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.5 kB] 115s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 115s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [370 kB] 115s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 115s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [96.9 kB] 115s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 115s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 115s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 115s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [423 kB] 115s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 115s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 115s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 116s Fetched 1091 kB in 1s (1416 kB/s) 116s Reading package lists... 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Calculating upgrade... 119s The following packages will be upgraded: 119s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 119s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 119s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data 119s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 119s openssh-server openssh-sftp-server openssl telnet 119s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Need to get 20.4 MB of archives. 119s After this operation, 383 kB of additional disk space will be used. 119s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 119s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 121s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 121s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 122s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 122s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 122s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 122s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 123s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 123s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 123s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 124s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 124s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 125s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 126s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 126s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 126s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 126s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 126s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 126s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 127s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 127s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 127s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 127s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 127s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 128s Preconfiguring packages ... 128s Fetched 20.4 MB in 9s (2368 kB/s) 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 128s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 128s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 128s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 128s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 128s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 128s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 129s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 129s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 129s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 129s Error: Could not restart systemd, systemd binary not working 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 129s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 129s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 129s Setting up libc-bin (2.39-3.1ubuntu3) ... 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 129s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 129s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 129s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 129s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 129s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 129s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 129s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 129s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 129s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 129s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 129s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 129s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 129s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 130s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 130s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 130s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 130s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 130s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_s390x.deb ... 130s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 130s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 130s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 130s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_s390x.deb ... 130s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 130s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 130s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 130s Preparing to unpack .../11-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../12-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../13-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../14-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../15-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../16-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../17-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../18-libnss3_2%3a3.102-1_s390x.deb ... 130s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 130s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 130s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 130s Setting up libnghttp2-14:s390x (1.62.1-2) ... 130s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 130s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 130s Setting up libnss3:s390x (2:3.102-1) ... 130s Setting up locales (2.39-3.1ubuntu3) ... 131s Generating locales (this might take a while)... 132s en_US.UTF-8... done 132s Generation complete. 132s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 132s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 132s No schema files found: doing nothing. 132s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 132s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 132s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 132s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 132s Setting up openssl (3.2.2-1ubuntu1) ... 132s Installing new version of config file /etc/ssl/openssl.cnf ... 132s Setting up libc-devtools (2.39-3.1ubuntu3) ... 132s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 132s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 132s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 132s Setting up telnet (0.17+2.5-5ubuntu1) ... 132s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 132s Installing new version of config file /etc/pam.d/sshd ... 134s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 134s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 134s Processing triggers for ufw (0.36.2-6) ... 134s Processing triggers for systemd (256-1ubuntu1) ... 134s Processing triggers for man-db (2.12.1-2) ... 135s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 137s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 138s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [13:18:22]: rebooting testbed after setup commands that affected boot 143s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 171s autopkgtest [13:18:54]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 173s autopkgtest [13:18:56]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 175s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 175s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 175s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 175s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 175s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 175s gpgv: issuer "gspr@nonempty.org" 175s gpgv: Can't check signature: No public key 175s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 176s autopkgtest [13:18:59]: testing package python-pot version 0.9.3+dfsg-2 176s autopkgtest [13:18:59]: build not needed 176s autopkgtest [13:18:59]: test upstream.sh: preparing testbed 177s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 178s The following additional packages will be installed: 178s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 178s python3-decorator python3-iniconfig python3-joblib python3-numpy 178s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 178s python3-sklearn python3-sklearn-lib python3-threadpoolctl 178s Suggested packages: 178s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 178s python-sklearn-doc ipython3 178s Recommended packages: 178s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 178s python3-matplotlib 178s The following NEW packages will be installed: 178s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 178s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 178s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 178s python3-sklearn python3-sklearn-lib python3-threadpoolctl 178s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 32.5 MB/32.5 MB of archives. 178s After this operation, 139 MB of additional disk space will be used. 178s Get:1 /tmp/autopkgtest.Fq14EW/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 178s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 179s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 179s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 179s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 181s Get:6 http://ftpmaster.internal/ubuntu oracular/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 181s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B] 181s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 181s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 181s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-joblib all 1.3.2-2 [208 kB] 181s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 184s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x python3-packaging all 24.1-1 [41.4 kB] 184s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 184s Get:14 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-scipy s390x 1.12.0-2 [17.3 MB] 191s Get:15 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pot s390x 0.9.3+dfsg-2 [221 kB] 191s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pytest all 7.4.4-1 [305 kB] 191s Get:17 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 191s Get:18 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-3 [3971 kB] 192s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 193s Fetched 32.5 MB in 14s (2298 kB/s) 193s Selecting previously unselected package libblas3:s390x. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 193s Preparing to unpack .../00-libblas3_3.12.0-3build1_s390x.deb ... 193s Unpacking libblas3:s390x (3.12.0-3build1) ... 193s Selecting previously unselected package libgfortran5:s390x. 193s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 193s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 193s Selecting previously unselected package libgomp1:s390x. 193s Preparing to unpack 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autopkgtest-satdep (0) ... 194s Setting up python3-iniconfig (1.1.1-2) ... 194s Setting up python3-joblib (1.3.2-2) ... 195s Setting up python3-threadpoolctl (3.1.0-1) ... 195s Setting up python3-all (3.12.3-0ubuntu1) ... 195s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ... 195s Setting up python3-decorator (5.1.1-5) ... 195s Setting up libblas3:s390x (3.12.0-3build1) ... 195s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 195s Setting up python3-packaging (24.1-1) ... 195s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 195s Setting up python3-pluggy (1.5.0-1) ... 195s Setting up liblapack3:s390x (3.12.0-3build1) ... 195s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 195s Setting up python3-pytest (7.4.4-1) ... 196s Setting up python3-numpy (1:1.26.4+ds-10) ... 199s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 199s Setting up python3-scipy (1.12.0-2) ... 203s Setting up python3-pot (0.9.3+dfsg-2) ... 203s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 203s """ 203s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 203s """ 203s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-3) ... 203s Setting up python3-sklearn (1.4.2+dfsg-3) ... 206s Setting up autopkgtest-satdep (0) ... 206s Processing triggers for man-db (2.12.1-2) ... 207s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 209s (Reading database ... 58310 files and directories currently installed.) 209s Removing autopkgtest-satdep (0) ... 210s autopkgtest [13:19:33]: test upstream.sh: [----------------------- 210s Running tests with Python 3.12. 211s ============================= test session starts ============================== 211s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 211s rootdir: /tmp/autopkgtest.Fq14EW/autopkgtest_tmp 211s collected 586 items 211s 211s test/test_1d_solver.py ...s..s...... [ 2%] 211s test/test_backend.py .......... [ 3%] 217s test/test_bregman.py ......................................sss.......... [ 12%] 224s .....................................ss....ss..ss..s....... [ 22%] 225s test/test_coot.py ......... [ 24%] 226s test/test_da.py .....................s.. [ 28%] 226s test/test_dmmot.py .. [ 28%] 226s test/test_dr.py ssssss [ 29%] 227s test/test_factored.py .. [ 30%] 234s test/test_gaussian.py .................. [ 33%] 234s test/test_gnn.py ssss [ 33%] 242s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 243s .. [ 43%] 245s test/test_lowrank.py ........... [ 44%] 245s test/test_mapping.py sss. [ 45%] 247s test/test_optim.py ...... [ 46%] 248s test/test_ot.py ....s..........s.. [ 49%] 250s test/test_partial.py ...... [ 50%] 250s test/test_plot.py ss [ 51%] 250s test/test_regpath.py .. [ 51%] 251s test/test_sliced.py ...........s..s............. [ 56%] 251s test/test_smooth.py ... [ 56%] 254s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 256s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 259s ....ssssssss...ss............. [ 82%] 262s test/test_stochastic.py ......... [ 84%] 266s test/test_unbalanced.py ................................................ [ 92%] 282s ................ [ 95%] 282s test/test_utils.py .......................... [ 99%] 282s test/test_weak.py .. [100%] 282s 282s =============================== warnings summary =============================== 282s test/test_bregman.py: 6 warnings 282s test/test_coot.py: 1 warning 282s test/test_da.py: 2 warnings 282s test/test_gromov.py: 13 warnings 282s test/test_optim.py: 1 warning 282s test/test_partial.py: 1 warning 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 282s warnings.warn("Sinkhorn did not converge. You might want to " 282s 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 282s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 282s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 282s test/test_bregman.py::test_sinkhorn_warmstart 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 282s warnings.warn("Sinkhorn did not converge. You might want to " 282s 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 282s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 282s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 282s warnings.warn("Sinkhorn did not converge. You might want to " 282s 282s test/test_bregman.py::test_sinkhorn_empty 282s test/test_bregman.py::test_sinkhorn_variants[numpy] 282s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 282s test/test_bregman.py::test_sinkhorn_variants_log 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 282s warnings.warn("Sinkhorn did not converge. You might want to " 282s 282s test/test_coot.py::test_coot[numpy-False] 282s test/test_coot.py::test_coot[numpy-True] 282s test/test_coot.py::test_coot[numpy-1] 282s test/test_coot.py::test_coot[numpy-0] 282s test/test_coot.py::test_coot_warmstart[numpy] 282s test/test_coot.py::test_coot_log[numpy] 282s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 282s result_code_string = check_result(result_code) 282s 282s test/test_gromov.py::test_gromov_integer_warnings[numpy] 282s /tmp/autopkgtest.Fq14EW/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 282s G = ot.gromov.gromov_wasserstein( 282s 282s test/test_gromov.py::test_gromov_integer_warnings[numpy] 282s /tmp/autopkgtest.Fq14EW/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 282s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 282s 282s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 282s return np.log(a) 282s 282s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 282s v = b / KtransposeU 282s 282s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 282s v = b / KtransposeU 282s 282s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 282s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 282s warnings.warn('Warning: numerical errors at iteration %d' % ii) 282s 282s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 282s warnings.warn("Solver failed to produce a transport plan. You might " 282s 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 282s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 282s 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s test/test_gromov.py::test_pointwise_gromov[numpy] 282s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 282s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 282s 282s test/test_gromov.py: 400 warnings 282s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 282s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 282s 282s test/test_gromov.py: 400 warnings 282s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 282s index[1] = generator.choice( 282s 282s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 282s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 282s warnings.warn("Solver failed to produce a transport plan. You might " 282s 282s test/test_gromov.py::test_fgw_integer_warnings[numpy] 282s /tmp/autopkgtest.Fq14EW/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 282s G, log = ot.gromov.fused_gromov_wasserstein( 282s 282s test/test_gromov.py::test_fgw_integer_warnings[numpy] 282s /tmp/autopkgtest.Fq14EW/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 282s Gb, logb = ot.gromov.fused_gromov_wasserstein( 282s 282s test/test_regpath.py: 232 warnings 282s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 282s M[-1, -1] = 1 / s 282s 282s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 282s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 282s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 282s 282s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 282s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 282s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 282s 282s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 282s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 282s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 282s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 282s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 282s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 282s 282s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 282s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 282s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 282s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 282s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 282s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 282s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 282s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 282s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 282s 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 282s v = (b / Ktu) ** fi_2 282s 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 282s warnings.warn('Numerical errors at iteration %s' % i) 282s 282s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 282s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 282s 282s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 282s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 282s warnings.warn("The div parameter should be either equal to 'kl' or \ 282s 282s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 282s ===== 512 passed, 70 skipped, 4 xfailed, 1120 warnings in 71.67s (0:01:11) ===== 283s ********** 283s autopkgtest [13:20:46]: test upstream.sh: -----------------------] 283s upstream.sh PASS 283s autopkgtest [13:20:46]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 284s autopkgtest [13:20:47]: @@@@@@@@@@@@@@@@@@@@ summary 284s upstream.sh PASS 297s nova [W] Using flock in scalingstack-bos01-s390x 297s Creating nova instance adt-oracular-s390x-python-pot-20240713-131603-juju-7f2275-prod-proposed-migration-environment-3-7b27a60f-5e03-4829-85a9-dc3f76b3e1ef from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)...