0s autopkgtest [05:54:07]: starting date and time: 2024-06-08 05:54:07+0000 0s autopkgtest [05:54:07]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [05:54:07]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tqh8ym_3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-s390x-6.secgroup --name adt-oracular-s390x-python-pot-20240608-055406-juju-7f2275-prod-proposed-migration-environment-3-bfd15bd1-eade-418c-b9cc-7c5d9a45cfad --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 164s autopkgtest [05:56:51]: testbed dpkg architecture: s390x 165s autopkgtest [05:56:52]: testbed apt version: 2.9.3 165s autopkgtest [05:56:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 166s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 166s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 166s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 166s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 166s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [327 kB] 166s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [47.8 kB] 166s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1860 B] 166s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [249 kB] 166s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1768 B] 167s Fetched 792 kB in 1s (784 kB/s) 167s Reading package lists... 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s Calculating upgrade... 170s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 171s 0 upgraded, 0 newly installed, 0 to remove and 23 not upgraded. 171s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 171s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 171s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 172s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 173s Reading package lists... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Calculating upgrade... 175s The following package was automatically installed and is no longer required: 175s systemd-dev 175s Use 'sudo apt autoremove' to remove it. 175s The following packages have been kept back: 175s kpartx multipath-tools 175s The following packages will be upgraded: 175s apt apt-utils bash ibverbs-providers libapt-pkg6.0t64 libibverbs1 175s libnss-systemd libpam-systemd libsystemd-shared libsystemd0 libudev1 libxml2 175s man-db python3-cryptography python3-openssl systemd systemd-dev 175s systemd-resolved systemd-sysv systemd-timesyncd udev 175s 21 upgraded, 0 newly installed, 0 to remove and 2 not upgraded. 175s Need to get 16.4 MB of archives. 175s After this operation, 1156 kB of additional disk space will be used. 175s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x bash s390x 5.2.21-2.1ubuntu1 [835 kB] 175s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x systemd-timesyncd s390x 256~rc3-5ubuntu1 [35.3 kB] 175s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x systemd-resolved s390x 256~rc3-5ubuntu1 [318 kB] 175s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x systemd-dev all 256~rc3-5ubuntu1 [110 kB] 175s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x systemd s390x 256~rc3-5ubuntu1 [3710 kB] 176s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x udev s390x 256~rc3-5ubuntu1 [1961 kB] 176s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x systemd-sysv s390x 256~rc3-5ubuntu1 [11.9 kB] 176s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libnss-systemd s390x 256~rc3-5ubuntu1 [170 kB] 176s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libpam-systemd s390x 256~rc3-5ubuntu1 [250 kB] 176s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libsystemd-shared s390x 256~rc3-5ubuntu1 [2240 kB] 177s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libudev1 s390x 256~rc3-5ubuntu1 [196 kB] 177s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libsystemd0 s390x 256~rc3-5ubuntu1 [454 kB] 177s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libapt-pkg6.0t64 s390x 2.9.4 [1039 kB] 177s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x apt s390x 2.9.4 [1417 kB] 177s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x apt-utils s390x 2.9.4 [220 kB] 177s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libxml2 s390x 2.12.7+dfsg-3 [663 kB] 177s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libibverbs1 s390x 52.0-1 [69.5 kB] 177s Get:18 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x ibverbs-providers s390x 52.0-1 [402 kB] 177s Get:19 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x man-db s390x 2.12.1-2 [1332 kB] 177s Get:20 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x python3-cryptography s390x 42.0.5-2 [965 kB] 177s Get:21 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x python3-openssl all 24.1.0-1 [46.8 kB] 178s Preconfiguring packages ... 178s Fetched 16.4 MB in 2s (6812 kB/s) 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 178s Preparing to unpack .../bash_5.2.21-2.1ubuntu1_s390x.deb ... 178s Unpacking bash (5.2.21-2.1ubuntu1) over (5.2.21-2ubuntu5) ... 178s Setting up bash (5.2.21-2.1ubuntu1) ... 178s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 178s Preparing to unpack .../0-systemd-timesyncd_256~rc3-5ubuntu1_s390x.deb ... 178s Unpacking systemd-timesyncd (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 178s Preparing to unpack .../1-systemd-resolved_256~rc3-5ubuntu1_s390x.deb ... 178s Unpacking systemd-resolved (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 178s Preparing to unpack .../2-systemd-dev_256~rc3-5ubuntu1_all.deb ... 178s Unpacking systemd-dev (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 178s Preparing to unpack .../3-systemd_256~rc3-5ubuntu1_s390x.deb ... 178s Unpacking systemd (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 179s Preparing to unpack .../4-udev_256~rc3-5ubuntu1_s390x.deb ... 179s Unpacking udev (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 179s Preparing to unpack .../5-libsystemd-shared_256~rc3-5ubuntu1_s390x.deb ... 179s Unpacking libsystemd-shared:s390x (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 179s Setting up libsystemd-shared:s390x (256~rc3-5ubuntu1) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54668 files and directories currently installed.) 179s Preparing to unpack .../libsystemd0_256~rc3-5ubuntu1_s390x.deb ... 179s Unpacking libsystemd0:s390x (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 179s Setting up libsystemd0:s390x (256~rc3-5ubuntu1) ... 179s Setting up systemd (256~rc3-5ubuntu1) ... 179s Installing new version of config file /etc/systemd/journald.conf ... 179s Installing new version of config file /etc/systemd/logind.conf ... 179s Installing new version of config file /etc/systemd/networkd.conf ... 179s Installing new version of config file /etc/systemd/sleep.conf ... 179s Installing new version of config file /etc/systemd/system.conf ... 179s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 179s Created symlink '/run/systemd/system/tmp.mount' → '/dev/null'. 180s /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54668 files and directories currently installed.) 181s Preparing to unpack .../systemd-sysv_256~rc3-5ubuntu1_s390x.deb ... 181s Unpacking systemd-sysv (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 181s Preparing to unpack .../libnss-systemd_256~rc3-5ubuntu1_s390x.deb ... 181s Unpacking libnss-systemd:s390x (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 181s Preparing to unpack .../libpam-systemd_256~rc3-5ubuntu1_s390x.deb ... 181s Unpacking libpam-systemd:s390x (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 181s Preparing to unpack .../libudev1_256~rc3-5ubuntu1_s390x.deb ... 181s Unpacking libudev1:s390x (256~rc3-5ubuntu1) over (255.4-1ubuntu8) ... 181s Setting up libudev1:s390x (256~rc3-5ubuntu1) ... 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54668 files and directories currently installed.) 181s Preparing to unpack .../libapt-pkg6.0t64_2.9.4_s390x.deb ... 181s Unpacking libapt-pkg6.0t64:s390x (2.9.4) over (2.9.3) ... 181s Setting up libapt-pkg6.0t64:s390x (2.9.4) ... 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54668 files and directories currently installed.) 181s Preparing to unpack .../archives/apt_2.9.4_s390x.deb ... 181s Unpacking apt (2.9.4) over (2.9.3) ... 182s Setting up apt (2.9.4) ... 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54668 files and directories currently installed.) 182s Preparing to unpack .../0-apt-utils_2.9.4_s390x.deb ... 182s Unpacking apt-utils (2.9.4) over (2.9.3) ... 182s Preparing to unpack .../1-libxml2_2.12.7+dfsg-3_s390x.deb ... 182s Unpacking libxml2:s390x (2.12.7+dfsg-3) over (2.9.14+dfsg-1.3ubuntu3) ... 182s Preparing to unpack .../2-libibverbs1_52.0-1_s390x.deb ... 182s Unpacking libibverbs1:s390x (52.0-1) over (50.0-2build2) ... 182s Preparing to unpack .../3-ibverbs-providers_52.0-1_s390x.deb ... 183s Unpacking ibverbs-providers:s390x (52.0-1) over (50.0-2build2) ... 183s Preparing to unpack .../4-man-db_2.12.1-2_s390x.deb ... 183s Unpacking man-db (2.12.1-2) over (2.12.1-1) ... 183s Preparing to unpack .../5-python3-cryptography_42.0.5-2_s390x.deb ... 183s Unpacking python3-cryptography (42.0.5-2) over (41.0.7-4build3) ... 183s Preparing to unpack .../6-python3-openssl_24.1.0-1_all.deb ... 183s Unpacking python3-openssl (24.1.0-1) over (23.2.0-1) ... 183s Setting up libibverbs1:s390x (52.0-1) ... 183s Setting up systemd-sysv (256~rc3-5ubuntu1) ... 183s Setting up apt-utils (2.9.4) ... 183s Setting up ibverbs-providers:s390x (52.0-1) ... 183s Setting up libnss-systemd:s390x (256~rc3-5ubuntu1) ... 183s Setting up systemd-dev (256~rc3-5ubuntu1) ... 183s Setting up man-db (2.12.1-2) ... 183s Updating database of manual pages ... 186s man-db.service is a disabled or a static unit not running, not starting it. 187s Setting up python3-cryptography (42.0.5-2) ... 187s Setting up systemd-timesyncd (256~rc3-5ubuntu1) ... 188s Setting up udev (256~rc3-5ubuntu1) ... 189s Setting up libpam-systemd:s390x (256~rc3-5ubuntu1) ... 189s Setting up libxml2:s390x (2.12.7+dfsg-3) ... 189s Setting up systemd-resolved (256~rc3-5ubuntu1) ... 189s Installing new version of config file /etc/systemd/resolved.conf ... 190s Setting up python3-openssl (24.1.0-1) ... 190s Processing triggers for dbus (1.14.10-4ubuntu4) ... 190s Processing triggers for shared-mime-info (2.4-5) ... 191s Processing triggers for debianutils (5.18) ... 191s Processing triggers for install-info (7.1-3build2) ... 191s Processing triggers for initramfs-tools (0.142ubuntu28) ... 191s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 191s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 196s Using config file '/etc/zipl.conf' 196s Building bootmap in '/boot' 196s Adding IPL section 'ubuntu' (default) 196s Preparing boot device for LD-IPL: vda (0000). 196s Done. 196s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 198s Reading package lists... 199s Building dependency tree... 199s Reading state information... 199s The following packages will be REMOVED: 199s systemd-dev* 200s 0 upgraded, 0 newly installed, 1 to remove and 2 not upgraded. 200s After this operation, 758 kB disk space will be freed. 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54737 files and directories currently installed.) 200s Removing systemd-dev (256~rc3-5ubuntu1) ... 200s autopkgtest [05:57:27]: rebooting testbed after setup commands that affected boot 204s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 226s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 232s autopkgtest [05:57:59]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 235s autopkgtest [05:58:02]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 237s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 237s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 237s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 237s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 237s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 237s gpgv: issuer "gspr@nonempty.org" 237s gpgv: Can't check signature: No public key 237s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 237s autopkgtest [05:58:04]: testing package python-pot version 0.9.3+dfsg-2 238s autopkgtest [05:58:05]: build not needed 238s autopkgtest [05:58:05]: test upstream.sh: preparing testbed 239s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Starting pkgProblemResolver with broken count: 0 240s Starting 2 pkgProblemResolver with broken count: 0 240s Done 240s The following additional packages will be installed: 240s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 240s python3-decorator python3-iniconfig python3-joblib python3-numpy 240s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 240s python3-sklearn python3-sklearn-lib python3-threadpoolctl 240s Suggested packages: 240s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 240s python-sklearn-doc ipython3 240s Recommended packages: 240s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 240s python3-matplotlib 240s The following NEW packages will be installed: 240s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 240s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 240s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 240s python3-sklearn python3-sklearn-lib python3-threadpoolctl 240s 0 upgraded, 19 newly installed, 0 to remove and 2 not upgraded. 240s Need to get 32.5 MB/32.5 MB of archives. 240s After this operation, 139 MB of additional disk space will be used. 240s Get:1 /tmp/autopkgtest.c98knI/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 240s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 241s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 241s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 241s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 241s Get:6 http://ftpmaster.internal/ubuntu oracular/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 241s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B] 241s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 241s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 241s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-joblib all 1.3.2-2 [208 kB] 241s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 242s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x python3-packaging all 24.0-1 [41.1 kB] 242s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 242s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x python3-scipy s390x 1.12.0-2 [17.3 MB] 242s Get:15 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pot s390x 0.9.3+dfsg-2 [221 kB] 242s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x python3-pytest all 8.2.2-1ubuntu1 [250 kB] 242s Get:17 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 242s Get:18 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-1 [3984 kB] 243s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 243s Fetched 32.5 MB in 2s (13.4 MB/s) 243s Selecting previously unselected package libblas3:s390x. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54690 files and directories currently installed.) 243s Preparing to unpack .../00-libblas3_3.12.0-3build1_s390x.deb ... 243s Unpacking libblas3:s390x (3.12.0-3build1) ... 243s Selecting previously unselected package libgfortran5:s390x. 243s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 243s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 243s Selecting previously unselected package libgomp1:s390x. 243s Preparing to unpack .../02-libgomp1_14.1.0-1ubuntu1_s390x.deb ... 243s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ... 243s Selecting previously unselected package liblapack3:s390x. 243s Preparing to unpack .../03-liblapack3_3.12.0-3build1_s390x.deb ... 243s Unpacking liblapack3:s390x (3.12.0-3build1) ... 243s Selecting previously unselected package liblbfgsb0:s390x. 243s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 243s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 243s Selecting previously unselected package python3-all. 243s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_s390x.deb ... 243s Unpacking python3-all (3.12.3-0ubuntu1) ... 243s Selecting previously unselected package python3-decorator. 243s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 243s Unpacking python3-decorator (5.1.1-5) ... 243s Selecting previously unselected package python3-iniconfig. 243s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 243s Unpacking 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[100%] 348s 348s =============================== warnings summary =============================== 348s test/test_bregman.py::test_nan_warning[sinkhorn] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: divide by zero encountered in divide 348s K = nx.exp(M / (-reg)) 348s 348s test/test_bregman.py::test_nan_warning[sinkhorn] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:489: RuntimeWarning: invalid value encountered in divide 348s K = nx.exp(M / (-reg)) 348s 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: divide by zero encountered in divide 348s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 348s 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1077: RuntimeWarning: invalid value encountered in divide 348s return nx.exp(-(M - alpha.reshape((dim_a, 1)) 348s 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: divide by zero encountered in divide 348s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 348s 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s test/test_bregman.py::test_nan_warning[sinkhorn_stabilized] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1082: RuntimeWarning: invalid value encountered in divide 348s return nx.exp(-(M - alpha.reshape((dim_a, 1)) - beta.reshape((1, dim_b))) 348s 348s test/test_bregman.py: 6 warnings 348s test/test_coot.py: 1 warning 348s test/test_da.py: 2 warnings 348s test/test_gromov.py: 13 warnings 348s test/test_optim.py: 1 warning 348s test/test_partial.py: 1 warning 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 348s warnings.warn("Sinkhorn did not converge. You might want to " 348s 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 348s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 348s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 348s test/test_bregman.py::test_sinkhorn_warmstart 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 348s warnings.warn("Sinkhorn did not converge. You might want to " 348s 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 348s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 348s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 348s warnings.warn("Sinkhorn did not converge. You might want to " 348s 348s test/test_bregman.py::test_sinkhorn_empty 348s test/test_bregman.py::test_sinkhorn_variants[numpy] 348s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 348s test/test_bregman.py::test_sinkhorn_variants_log 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 348s warnings.warn("Sinkhorn did not converge. You might want to " 348s 348s test/test_coot.py::test_coot[numpy-False] 348s test/test_coot.py::test_coot[numpy-True] 348s test/test_coot.py::test_coot[numpy-1] 348s test/test_coot.py::test_coot[numpy-0] 348s test/test_coot.py::test_coot_warmstart[numpy] 348s test/test_coot.py::test_coot_log[numpy] 348s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 348s result_code_string = check_result(result_code) 348s 348s test/test_gromov.py::test_gromov_integer_warnings[numpy] 348s /tmp/autopkgtest.c98knI/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 348s G = ot.gromov.gromov_wasserstein( 348s 348s test/test_gromov.py::test_gromov_integer_warnings[numpy] 348s /tmp/autopkgtest.c98knI/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 348s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 348s 348s test/test_gromov.py::test_BAPG_gromov[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:507: RuntimeWarning: divide by zero encountered in divide 348s column_scaling = q / nx.sum(T, 0) 348s 348s test/test_gromov.py::test_BAPG_gromov[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:508: RuntimeWarning: invalid value encountered in multiply 348s T = nx.reshape(column_scaling, (1, -1)) * T 348s 348s test/test_gromov.py::test_BAPG_fgw[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1352: RuntimeWarning: divide by zero encountered in divide 348s row_scaling = p / nx.sum(T, 1) 348s 348s test/test_gromov.py::test_BAPG_fgw[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1353: RuntimeWarning: invalid value encountered in multiply 348s T = nx.reshape(row_scaling, (-1, 1)) * T 348s 348s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 348s return np.log(a) 348s 348s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 348s v = b / KtransposeU 348s 348s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 348s v = b / KtransposeU 348s 348s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 348s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 348s warnings.warn('Warning: numerical errors at iteration %d' % ii) 348s 348s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 348s warnings.warn("Solver failed to produce a transport plan. You might " 348s 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 348s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 348s 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s test/test_gromov.py::test_pointwise_gromov[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 348s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 348s 348s test/test_gromov.py: 400 warnings 348s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 348s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 348s 348s test/test_gromov.py: 400 warnings 348s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 348s index[1] = generator.choice( 348s 348s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 348s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 348s warnings.warn("Solver failed to produce a transport plan. You might " 348s 348s test/test_gromov.py::test_fgw_integer_warnings[numpy] 348s /tmp/autopkgtest.c98knI/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 348s G, log = ot.gromov.fused_gromov_wasserstein( 348s 348s test/test_gromov.py::test_fgw_integer_warnings[numpy] 348s /tmp/autopkgtest.c98knI/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 348s Gb, logb = ot.gromov.fused_gromov_wasserstein( 348s 348s test/test_regpath.py: 232 warnings 348s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 348s M[-1, -1] = 1 / s 348s 348s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 348s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 348s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 348s 348s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 348s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 348s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 348s 348s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 348s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 348s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 348s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 348s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 348s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 348s 348s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 348s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 348s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 348s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 348s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 348s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 348s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 348s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 348s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 348s 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 348s v = (b / Ktu) ** fi_2 348s 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 348s warnings.warn('Numerical errors at iteration %s' % i) 348s 348s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 348s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 348s 348s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 348s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 348s warnings.warn("The div parameter should be either equal to 'kl' or \ 348s 348s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 348s ===== 512 passed, 70 skipped, 4 xfailed, 1132 warnings in 85.32s (0:01:25) ===== 348s ********** 348s autopkgtest [05:59:55]: test upstream.sh: -----------------------] 349s upstream.sh PASS 349s autopkgtest [05:59:56]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 349s autopkgtest [05:59:56]: @@@@@@@@@@@@@@@@@@@@ summary 349s upstream.sh PASS 367s nova [W] Using flock in scalingstack-bos01-s390x 367s flock: timeout while waiting to get lock 367s Creating nova instance adt-oracular-s390x-python-pot-20240608-055406-juju-7f2275-prod-proposed-migration-environment-3-bfd15bd1-eade-418c-b9cc-7c5d9a45cfad from image adt/ubuntu-oracular-s390x-server-20240608.img (UUID 9c82b96c-7865-4fb2-b62d-4f542cae9b10)...