1s autopkgtest [13:18:39]: starting date and time: 2024-07-23 13:18:39+0000
  2s autopkgtest [13:18:40]: git checkout: fd3bed09 nova: allow more retries for quota issues
  2s autopkgtest [13:18:40]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.viorpfnx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83 --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-3ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-s390x-9.secgroup --name adt-oracular-s390x-prime-phylo-20240723-131835-juju-7f2275-prod-proposed-migration-environment-3-cd4858ae-833c-4df2-be98-be8e3ced5d58 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
133s autopkgtest [13:20:51]: testbed dpkg architecture: s390x
133s autopkgtest [13:20:51]: testbed apt version: 2.9.6
133s autopkgtest [13:20:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
134s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [5704 B]
134s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
135s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [66.5 kB]
135s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [393 kB]
135s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [107 kB]
135s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B]
135s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B]
135s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B]
135s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [447 kB]
135s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B]
135s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [2932 B]
135s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B]
135s Fetched 1169 kB in 1s (1433 kB/s)
135s Reading package lists...
137s Reading package lists...
137s Building dependency tree...
137s Reading state information...
137s Calculating upgrade...
138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Reading package lists...
138s Building dependency tree...
138s Reading state information...
138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
138s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
138s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB]
139s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
139s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
139s Get:5 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.4 MB]
139s Get:6 http://ftpmaster.internal/ubuntu oracular/main Sources [1381 kB]
139s Get:7 http://ftpmaster.internal/ubuntu oracular/multiverse Sources [300 kB]
139s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1336 kB]
140s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.5 MB]
140s Get:10 http://ftpmaster.internal/ubuntu oracular/multiverse s390x Packages [167 kB]
143s Fetched 38.2 MB in 5s (7875 kB/s)
143s Reading package lists...
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Calculating upgrade...
144s The following packages will be upgraded:
144s   cloud-init cpio dash gcc-14-base gdisk krb5-locales libbpf1 libgcc-s1
144s   libgssapi-krb5-2 libheif-plugin-aomdec libheif-plugin-aomenc
144s   libheif-plugin-libde265 libheif1 libk5crypto3 libkrb5-3 libkrb5support0
144s   libnftnl11 libstdc++6 libudisks2-0 libxml2 nano netcat-openbsd
144s   powermgmt-base s390-tools s390-tools-data s390-tools-signed systemd-hwe-hwdb
144s   udisks2
144s 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
144s Need to get 7938 kB of archives.
144s After this operation, 529 kB disk space will be freed.
144s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x dash s390x 0.5.12-9ubuntu1 [94.5 kB]
144s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-14-base s390x 14.1.0-5ubuntu1 [49.8 kB]
144s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libstdc++6 s390x 14.1.0-5ubuntu1 [897 kB]
144s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libgcc-s1 s390x 14.1.0-5ubuntu1 [35.8 kB]
144s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x krb5-locales all 1.21.3-3 [14.3 kB]
144s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libbpf1 s390x 1:1.4.5-1 [180 kB]
144s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libgssapi-krb5-2 s390x 1.21.3-3 [146 kB]
144s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libkrb5-3 s390x 1.21.3-3 [352 kB]
145s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libkrb5support0 s390x 1.21.3-3 [34.8 kB]
145s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libk5crypto3 s390x 1.21.3-3 [89.5 kB]
145s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libxml2 s390x 2.12.7+dfsg-3 [663 kB]
145s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x netcat-openbsd s390x 1.226-1.1 [43.4 kB]
145s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x systemd-hwe-hwdb all 256.2.1 [3210 B]
145s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x cpio s390x 2.15+dfsg-1ubuntu3 [87.9 kB]
145s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libnftnl11 s390x 1.2.7-1 [65.9 kB]
145s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x nano s390x 8.1-1 [297 kB]
145s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x powermgmt-base all 1.37+nmu1 [6928 B]
145s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomdec s390x 1.17.6-4build1 [10.5 kB]
145s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomenc s390x 1.17.6-4build1 [15.2 kB]
145s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x libheif1 s390x 1.17.6-4build1 [294 kB]
145s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-libde265 s390x 1.17.6-4build1 [8334 B]
145s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x udisks2 s390x 2.10.1-9ubuntu1 [294 kB]
145s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x libudisks2-0 s390x 2.10.1-9ubuntu1 [173 kB]
145s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x s390-tools-data all 2.33.1-0ubuntu4 [18.9 kB]
145s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x s390-tools s390x 2.33.1-0ubuntu4 [3198 kB]
145s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x s390-tools-signed all 2.33.1-0ubuntu4 [12.3 kB]
145s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x cloud-init all 24.3~1g6e4153b3-0ubuntu1 [592 kB]
145s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x gdisk s390x 1.0.10-2 [261 kB]
145s Preconfiguring packages ...
145s Fetched 7938 kB in 1s (8102 kB/s)
145s (Reading database ... 
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(Reading database ... 54730 files and directories currently installed.)
145s Preparing to unpack .../dash_0.5.12-9ubuntu1_s390x.deb ...
145s Unpacking dash (0.5.12-9ubuntu1) over (0.5.12-6ubuntu5) ...
145s Setting up dash (0.5.12-9ubuntu1) ...
145s (Reading database ... 
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(Reading database ... 54730 files and directories currently installed.)
145s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_s390x.deb ...
145s Unpacking gcc-14-base:s390x (14.1.0-5ubuntu1) over (14.1.0-1ubuntu1) ...
145s Setting up gcc-14-base:s390x (14.1.0-5ubuntu1) ...
145s (Reading database ... 
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(Reading database ... 54730 files and directories currently installed.)
145s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_s390x.deb ...
145s Unpacking libstdc++6:s390x (14.1.0-5ubuntu1) over (14.1.0-1ubuntu1) ...
145s Setting up libstdc++6:s390x (14.1.0-5ubuntu1) ...
145s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54730 files and directories currently installed.)
145s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_s390x.deb ...
145s Unpacking libgcc-s1:s390x (14.1.0-5ubuntu1) over (14.1.0-1ubuntu1) ...
145s Setting up libgcc-s1:s390x (14.1.0-5ubuntu1) ...
145s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54730 files and directories currently installed.)
145s Preparing to unpack .../00-krb5-locales_1.21.3-3_all.deb ...
145s Unpacking krb5-locales (1.21.3-3) over (1.20.1-6ubuntu2) ...
145s Preparing to unpack .../01-libbpf1_1%3a1.4.5-1_s390x.deb ...
145s Unpacking libbpf1:s390x (1:1.4.5-1) over (1:1.4.3-1) ...
145s Preparing to unpack .../02-libgssapi-krb5-2_1.21.3-3_s390x.deb ...
145s Unpacking libgssapi-krb5-2:s390x (1.21.3-3) over (1.20.1-6ubuntu2) ...
145s Preparing to unpack .../03-libkrb5-3_1.21.3-3_s390x.deb ...
145s Unpacking libkrb5-3:s390x (1.21.3-3) over (1.20.1-6ubuntu2) ...
145s Preparing to unpack .../04-libkrb5support0_1.21.3-3_s390x.deb ...
145s Unpacking libkrb5support0:s390x (1.21.3-3) over (1.20.1-6ubuntu2) ...
145s Preparing to unpack .../05-libk5crypto3_1.21.3-3_s390x.deb ...
145s Unpacking libk5crypto3:s390x (1.21.3-3) over (1.20.1-6ubuntu2) ...
145s Preparing to unpack .../06-libxml2_2.12.7+dfsg-3_s390x.deb ...
145s Unpacking libxml2:s390x (2.12.7+dfsg-3) over (2.9.14+dfsg-1.3ubuntu3) ...
146s Preparing to unpack .../07-netcat-openbsd_1.226-1.1_s390x.deb ...
146s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ...
146s Preparing to unpack .../08-systemd-hwe-hwdb_256.2.1_all.deb ...
146s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ...
146s Preparing to unpack .../09-cpio_2.15+dfsg-1ubuntu3_s390x.deb ...
146s Unpacking cpio (2.15+dfsg-1ubuntu3) over (2.15+dfsg-1ubuntu2) ...
146s Preparing to unpack .../10-libnftnl11_1.2.7-1_s390x.deb ...
146s Unpacking libnftnl11:s390x (1.2.7-1) over (1.2.6-2build1) ...
146s Preparing to unpack .../11-nano_8.1-1_s390x.deb ...
146s Unpacking nano (8.1-1) over (8.0-1) ...
146s Preparing to unpack .../12-powermgmt-base_1.37+nmu1_all.deb ...
146s Unpacking powermgmt-base (1.37+nmu1) over (1.37) ...
146s Preparing to unpack .../13-libheif-plugin-aomdec_1.17.6-4build1_s390x.deb ...
146s Unpacking libheif-plugin-aomdec:s390x (1.17.6-4build1) over (1.17.6-3build2) ...
146s Preparing to unpack .../14-libheif-plugin-aomenc_1.17.6-4build1_s390x.deb ...
146s Unpacking libheif-plugin-aomenc:s390x (1.17.6-4build1) over (1.17.6-3build2) ...
146s Preparing to unpack .../15-libheif1_1.17.6-4build1_s390x.deb ...
146s Unpacking libheif1:s390x (1.17.6-4build1) over (1.17.6-3build2) ...
146s Preparing to unpack .../16-libheif-plugin-libde265_1.17.6-4build1_s390x.deb ...
146s Unpacking libheif-plugin-libde265:s390x (1.17.6-4build1) over (1.17.6-3build2) ...
146s Preparing to unpack .../17-udisks2_2.10.1-9ubuntu1_s390x.deb ...
146s Unpacking udisks2 (2.10.1-9ubuntu1) over (2.10.1-9) ...
146s Preparing to unpack .../18-libudisks2-0_2.10.1-9ubuntu1_s390x.deb ...
146s Unpacking libudisks2-0:s390x (2.10.1-9ubuntu1) over (2.10.1-9) ...
146s Preparing to unpack .../19-s390-tools-data_2.33.1-0ubuntu4_all.deb ...
146s Unpacking s390-tools-data (2.33.1-0ubuntu4) over (2.33.1-0ubuntu3) ...
146s Preparing to unpack .../20-s390-tools_2.33.1-0ubuntu4_s390x.deb ...
146s Unpacking s390-tools (2.33.1-0ubuntu4) over (2.33.1-0ubuntu3) ...
146s Preparing to unpack .../21-s390-tools-signed_2.33.1-0ubuntu4_all.deb ...
146s Unpacking s390-tools-signed (2.33.1-0ubuntu4) over (2.33.1-0ubuntu3) ...
146s Preparing to unpack .../22-cloud-init_24.3~1g6e4153b3-0ubuntu1_all.deb ...
146s Unpacking cloud-init (24.3~1g6e4153b3-0ubuntu1) over (24.2-0ubuntu1) ...
146s Preparing to unpack .../23-gdisk_1.0.10-2_s390x.deb ...
146s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ...
146s Setting up cpio (2.15+dfsg-1ubuntu3) ...
146s Setting up powermgmt-base (1.37+nmu1) ...
146s Setting up cloud-init (24.3~1g6e4153b3-0ubuntu1) ...
147s Setting up netcat-openbsd (1.226-1.1) ...
147s Setting up libnftnl11:s390x (1.2.7-1) ...
147s Setting up krb5-locales (1.21.3-3) ...
147s Setting up libkrb5support0:s390x (1.21.3-3) ...
147s Setting up s390-tools-signed (2.33.1-0ubuntu4) ...
147s Setting up gdisk (1.0.10-2) ...
147s Setting up libk5crypto3:s390x (1.21.3-3) ...
147s Setting up systemd-hwe-hwdb (256.2.1) ...
147s Setting up nano (8.1-1) ...
147s Installing new version of config file /etc/nanorc ...
147s Setting up libkrb5-3:s390x (1.21.3-3) ...
147s Setting up libxml2:s390x (2.12.7+dfsg-3) ...
147s Setting up libbpf1:s390x (1:1.4.5-1) ...
147s Setting up libudisks2-0:s390x (2.10.1-9ubuntu1) ...
147s Setting up s390-tools-data (2.33.1-0ubuntu4) ...
147s Setting up udisks2 (2.10.1-9ubuntu1) ...
148s Setting up libgssapi-krb5-2:s390x (1.21.3-3) ...
148s Setting up s390-tools (2.33.1-0ubuntu4) ...
149s Setting up libheif-plugin-aomdec:s390x (1.17.6-4build1) ...
149s Setting up libheif-plugin-libde265:s390x (1.17.6-4build1) ...
149s Setting up libheif1:s390x (1.17.6-4build1) ...
149s Setting up libheif-plugin-aomenc:s390x (1.17.6-4build1) ...
149s Processing triggers for libc-bin (2.39-0ubuntu9) ...
149s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ...
149s Processing triggers for man-db (2.12.1-2) ...
149s Processing triggers for dbus (1.14.10-4ubuntu4) ...
149s Processing triggers for udev (256-1ubuntu1) ...
150s Processing triggers for debianutils (5.20) ...
150s Processing triggers for install-info (7.1-3build2) ...
150s Processing triggers for initramfs-tools (0.142ubuntu30) ...
150s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic
150s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
151s Using config file '/etc/zipl.conf'
151s Building bootmap in '/boot'
151s Adding IPL section 'ubuntu' (default)
152s Preparing boot device for LD-IPL: vda (0000).
152s Done.
152s Reading package lists...
152s Building dependency tree...
152s Reading state information...
152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
152s autopkgtest [13:21:10]: rebooting testbed after setup commands that affected boot
156s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
183s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
189s autopkgtest [13:21:47]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024
192s autopkgtest [13:21:50]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo
194s Get:1 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (dsc) [2175 B]
194s Get:2 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (tar) [751 kB]
194s Get:3 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (diff) [9072 B]
194s gpgv: Signature made Fri Apr 12 11:16:52 2024 UTC
194s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
194s gpgv: Can't check signature: No public key
194s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-11.dsc: no acceptable signature found
194s autopkgtest [13:21:52]: testing package prime-phylo version 1.0.11-11
195s autopkgtest [13:21:53]: build not needed
195s autopkgtest [13:21:53]: test run-unit-test: preparing testbed
196s Reading package lists...
197s Building dependency tree...
197s Reading state information...
197s Starting pkgProblemResolver with broken count: 0
197s Starting 2 pkgProblemResolver with broken count: 0
197s Done
197s The following additional packages will be installed:
197s   libatomic1 libblas3 libboost-mpi1.83.0 libboost-serialization1.83.0
197s   libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhwloc-plugins
197s   libhwloc15 liblapack3 libmunge2 libopenmpi3t64 libpciaccess0 libpmix2t64
197s   librdmacm1t64 libxnvctrl0 ocl-icd-libopencl1 prime-phylo
197s Suggested packages:
197s   opencl-icd njplot treeviewx muscle probalign mafft python3-biopython mrbayes
197s   phyml raxml
197s The following NEW packages will be installed:
197s   autopkgtest-satdep libatomic1 libblas3 libboost-mpi1.83.0
197s   libboost-serialization1.83.0 libevent-pthreads-2.1-7t64 libfabric1
197s   libgfortran5 libhwloc-plugins libhwloc15 liblapack3 libmunge2 libopenmpi3t64
197s   libpciaccess0 libpmix2t64 librdmacm1t64 libxnvctrl0 ocl-icd-libopencl1
197s   prime-phylo
197s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
197s Need to get 9356 kB/9357 kB of archives.
197s After this operation, 31.8 MB of additional disk space will be used.
197s Get:1 /tmp/autopkgtest.6kC6JL/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B]
197s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libatomic1 s390x 14.1.0-5ubuntu1 [9432 B]
197s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB]
197s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libboost-serialization1.83.0 s390x 1.83.0-3ubuntu2 [347 kB]
197s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B]
197s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x librdmacm1t64 s390x 52.0-2 [73.1 kB]
197s Get:7 http://ftpmaster.internal/ubuntu oracular/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB]
198s Get:8 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc15 s390x 2.10.0-1build1 [177 kB]
198s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB]
198s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB]
198s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB]
198s Get:12 http://ftpmaster.internal/ubuntu oracular/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB]
198s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc-plugins s390x 2.10.0-1build1 [16.3 kB]
198s Get:14 http://ftpmaster.internal/ubuntu oracular/universe s390x libpmix2t64 s390x 5.0.1-4.1build1 [728 kB]
198s Get:15 http://ftpmaster.internal/ubuntu oracular/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu2 [2437 kB]
198s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libboost-mpi1.83.0 s390x 1.83.0-3ubuntu2 [272 kB]
199s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-5ubuntu1 [587 kB]
199s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB]
199s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x prime-phylo s390x 1.0.11-11 [827 kB]
199s Fetched 9356 kB in 2s (4118 kB/s)
199s Selecting previously unselected package libatomic1:s390x.
199s (Reading database ... 
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(Reading database ... 54731 files and directories currently installed.)
199s Preparing to unpack .../00-libatomic1_14.1.0-5ubuntu1_s390x.deb ...
199s Unpacking libatomic1:s390x (14.1.0-5ubuntu1) ...
199s Selecting previously unselected package libblas3:s390x.
199s Preparing to unpack .../01-libblas3_3.12.0-3build1_s390x.deb ...
199s Unpacking libblas3:s390x (3.12.0-3build1) ...
199s Selecting previously unselected package libboost-serialization1.83.0:s390x.
199s Preparing to unpack .../02-libboost-serialization1.83.0_1.83.0-3ubuntu2_s390x.deb ...
199s Unpacking libboost-serialization1.83.0:s390x (1.83.0-3ubuntu2) ...
199s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x.
199s Preparing to unpack .../03-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ...
199s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ...
199s Selecting previously unselected package librdmacm1t64:s390x.
199s Preparing to unpack .../04-librdmacm1t64_52.0-2_s390x.deb ...
199s Unpacking librdmacm1t64:s390x (52.0-2) ...
199s Selecting previously unselected package libfabric1:s390x.
199s Preparing to unpack .../05-libfabric1_1.17.0-3build2_s390x.deb ...
199s Unpacking libfabric1:s390x (1.17.0-3build2) ...
200s Selecting previously unselected package libhwloc15:s390x.
200s Preparing to unpack .../06-libhwloc15_2.10.0-1build1_s390x.deb ...
200s Unpacking libhwloc15:s390x (2.10.0-1build1) ...
200s Selecting previously unselected package libmunge2:s390x.
200s Preparing to unpack .../07-libmunge2_0.5.15-4build1_s390x.deb ...
200s Unpacking libmunge2:s390x (0.5.15-4build1) ...
200s Selecting previously unselected package libpciaccess0:s390x.
200s Preparing to unpack .../08-libpciaccess0_0.17-3build1_s390x.deb ...
200s Unpacking libpciaccess0:s390x (0.17-3build1) ...
200s Selecting previously unselected package libxnvctrl0:s390x.
200s Preparing to unpack .../09-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ...
200s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ...
200s Selecting previously unselected package ocl-icd-libopencl1:s390x.
200s Preparing to unpack .../10-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ...
200s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ...
200s Selecting previously unselected package libhwloc-plugins:s390x.
200s Preparing to unpack .../11-libhwloc-plugins_2.10.0-1build1_s390x.deb ...
200s Unpacking libhwloc-plugins:s390x (2.10.0-1build1) ...
200s Selecting previously unselected package libpmix2t64:s390x.
200s Preparing to unpack .../12-libpmix2t64_5.0.1-4.1build1_s390x.deb ...
200s Unpacking libpmix2t64:s390x (5.0.1-4.1build1) ...
200s Selecting previously unselected package libopenmpi3t64:s390x.
200s Preparing to unpack .../13-libopenmpi3t64_4.1.6-7ubuntu2_s390x.deb ...
200s Unpacking libopenmpi3t64:s390x (4.1.6-7ubuntu2) ...
200s Selecting previously unselected package libboost-mpi1.83.0.
200s Preparing to unpack .../14-libboost-mpi1.83.0_1.83.0-3ubuntu2_s390x.deb ...
200s Unpacking libboost-mpi1.83.0 (1.83.0-3ubuntu2) ...
200s Selecting previously unselected package libgfortran5:s390x.
200s Preparing to unpack .../15-libgfortran5_14.1.0-5ubuntu1_s390x.deb ...
200s Unpacking libgfortran5:s390x (14.1.0-5ubuntu1) ...
200s Selecting previously unselected package liblapack3:s390x.
200s Preparing to unpack .../16-liblapack3_3.12.0-3build1_s390x.deb ...
200s Unpacking liblapack3:s390x (3.12.0-3build1) ...
200s Selecting previously unselected package prime-phylo.
200s Preparing to unpack .../17-prime-phylo_1.0.11-11_s390x.deb ...
200s Unpacking prime-phylo (1.0.11-11) ...
200s Selecting previously unselected package autopkgtest-satdep.
200s Preparing to unpack .../18-1-autopkgtest-satdep.deb ...
200s Unpacking autopkgtest-satdep (0) ...
200s Setting up libpciaccess0:s390x (0.17-3build1) ...
200s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ...
200s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ...
200s Setting up libboost-serialization1.83.0:s390x (1.83.0-3ubuntu2) ...
200s Setting up libblas3:s390x (3.12.0-3build1) ...
200s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
200s Setting up libmunge2:s390x (0.5.15-4build1) ...
200s Setting up libhwloc15:s390x (2.10.0-1build1) ...
200s Setting up libatomic1:s390x (14.1.0-5ubuntu1) ...
200s Setting up libgfortran5:s390x (14.1.0-5ubuntu1) ...
200s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ...
200s Setting up librdmacm1t64:s390x (52.0-2) ...
200s Setting up libfabric1:s390x (1.17.0-3build2) ...
200s Setting up liblapack3:s390x (3.12.0-3build1) ...
200s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
200s Setting up libhwloc-plugins:s390x (2.10.0-1build1) ...
200s Setting up libpmix2t64:s390x (5.0.1-4.1build1) ...
200s Setting up libopenmpi3t64:s390x (4.1.6-7ubuntu2) ...
200s Setting up libboost-mpi1.83.0 (1.83.0-3ubuntu2) ...
200s Setting up prime-phylo (1.0.11-11) ...
200s Setting up autopkgtest-satdep (0) ...
200s Processing triggers for man-db (2.12.1-2) ...
200s Processing triggers for libc-bin (2.39-0ubuntu9) ...
202s (Reading database ... 55059 files and directories currently installed.)
202s Removing autopkgtest-satdep (0) ...
203s autopkgtest [13:22:01]: test run-unit-test: [-----------------------
203s PASS Test 1
265s               L              N          alpha           time
272s        -3785.26              0              1               
272s PASS Test 2
272s 
272s autopkgtest [13:23:10]: test run-unit-test: -----------------------]
307s run-unit-test        PASS
307s autopkgtest [13:23:45]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
340s autopkgtest [13:24:18]: @@@@@@@@@@@@@@@@@@@@ summary
340s run-unit-test        PASS
442s nova [W] Using flock in prodstack6-s390x
442s flock: timeout while waiting to get lock
442s Creating nova instance adt-oracular-s390x-prime-phylo-20240723-131835-juju-7f2275-prod-proposed-migration-environment-3-cd4858ae-833c-4df2-be98-be8e3ced5d58 from image adt/ubuntu-oracular-s390x-server-20240715.img (UUID ed8bb774-e5a3-40eb-b3e4-840bda88f6a9)...