0s autopkgtest [00:56:24]: starting date and time: 2024-07-13 00:56:24+0000 0s autopkgtest [00:56:24]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [00:56:24]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.eciy_wnz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade ncbi-tools6 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-7.secgroup --name adt-oracular-s390x-ncbi-tools6-20240713-005623-juju-7f2275-prod-proposed-migration-environment-2-cbd723e2-ba1a-4a13-a755-55c715ea07b2 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 74s autopkgtest [00:57:38]: testbed dpkg architecture: s390x 74s autopkgtest [00:57:38]: testbed apt version: 2.9.6 74s autopkgtest [00:57:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 75s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 76s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 76s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [47.1 kB] 76s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB] 76s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 76s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 76s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 76s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 76s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 76s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [397 kB] 76s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 76s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 76s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 76s Fetched 1026 kB in 1s (1281 kB/s) 76s Reading package lists... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 79s Calculating upgrade... 79s The following packages will be upgraded: 79s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 79s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 79s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data 79s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 79s openssh-server openssh-sftp-server openssl telnet 80s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 20.4 MB of archives. 80s After this operation, 383 kB of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 80s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 80s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 80s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 80s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 80s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 80s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 80s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 80s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 80s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 80s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 80s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 80s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 81s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 81s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 81s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 81s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 81s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 81s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 81s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 81s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 81s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 81s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 81s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 81s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 81s Preconfiguring packages ... 81s Fetched 20.4 MB in 2s (12.8 MB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 82s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 82s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 82s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 82s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 82s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 82s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 82s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 82s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 82s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 82s Error: Could not restart systemd, systemd binary not working 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 82s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 82s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 82s Setting up libc-bin (2.39-3.1ubuntu3) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 82s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 82s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 82s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 82s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 82s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 82s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 82s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 83s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 83s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 83s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 83s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 83s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 83s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 83s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 83s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 83s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 83s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 83s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_s390x.deb ... 83s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 83s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 83s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 83s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_s390x.deb ... 83s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 83s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 83s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 83s Preparing to unpack .../11-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../12-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../13-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../14-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../15-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../16-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../17-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 83s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 83s Preparing to unpack .../18-libnss3_2%3a3.102-1_s390x.deb ... 83s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 83s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 83s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 83s Setting up libnghttp2-14:s390x (1.62.1-2) ... 83s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 83s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 83s Setting up libnss3:s390x (2:3.102-1) ... 83s Setting up locales (2.39-3.1ubuntu3) ... 84s Generating locales (this might take a while)... 86s en_US.UTF-8... done 86s Generation complete. 86s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 86s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 86s No schema files found: doing nothing. 86s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 86s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 86s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 86s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 86s Setting up openssl (3.2.2-1ubuntu1) ... 86s Installing new version of config file /etc/ssl/openssl.cnf ... 86s Setting up libc-devtools (2.39-3.1ubuntu3) ... 86s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 86s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 86s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 86s Setting up telnet (0.17+2.5-5ubuntu1) ... 86s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 86s Installing new version of config file /etc/pam.d/sshd ... 87s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 87s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 87s Processing triggers for ufw (0.36.2-6) ... 87s Processing triggers for systemd (256-1ubuntu1) ... 88s Processing triggers for man-db (2.12.1-2) ... 89s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 90s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 90s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 90s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 91s Reading package lists... 91s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Calculating upgrade... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s autopkgtest [00:57:57]: rebooting testbed after setup commands that affected boot 97s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 122s autopkgtest [00:58:26]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 125s autopkgtest [00:58:29]: @@@@@@@@@@@@@@@@@@@@ apt-source ncbi-tools6 133s Get:1 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (dsc) [2919 B] 133s Get:2 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (tar) [65.7 MB] 133s Get:3 http://ftpmaster.internal/ubuntu oracular/universe ncbi-tools6 6.1.20170106+dfsg2-2 (diff) [1514 kB] 134s gpgv: Signature made Wed Mar 20 03:27:56 2024 UTC 134s gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 134s gpgv: Can't check signature: No public key 134s dpkg-source: warning: cannot verify inline signature for ./ncbi-tools6_6.1.20170106+dfsg2-2.dsc: no acceptable signature found 142s autopkgtest [00:58:46]: testing package ncbi-tools6 version 6.1.20170106+dfsg2-2 142s autopkgtest [00:58:46]: build not needed 233s autopkgtest [01:00:17]: test run-unit-test: preparing testbed 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s Starting pkgProblemResolver with broken count: 0 234s Starting 2 pkgProblemResolver with broken count: 0 234s Done 235s The following additional packages will be installed: 235s libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 235s libexpat1-dev libfontconfig-dev libfontconfig1-dev libfreetype-dev libgl-dev 235s libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa libglu1-mesa-dev libglvnd0 235s libglx-dev libglx-mesa0 libglx0 libice-dev libice6 libllvm17t64 235s libmotif-common libmotif-dev libmrm4 libncbi6-dev libncbi6t64 libopengl-dev 235s libopengl0 libpkgconf3 libpng-dev libsm-dev libsm6 libuil4 libvibrant6-dev 235s libvibrant6t64 libvulkan1 libx11-dev libx11-xcb1 libxau-dev libxcb-dri2-0 235s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-shm0 235s libxcb-sync1 libxcb-xfixes0 libxcb1-dev libxdmcp-dev libxext-dev libxfixes3 235s libxft-dev libxft2 libxm4 libxmu-dev libxmu-headers libxmu6 libxrender-dev 235s libxrender1 libxshmfence1 libxt-dev libxt6t64 libxxf86vm1 ncbi-cn3d 235s ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 pkgconf pkgconf-bin 235s uil uuid-dev x11-common x11proto-dev xorg-sgml-doctools xtrans-dev 235s zlib1g-dev 235s Suggested packages: 235s freetype2-doc libice-doc libsm-doc libx11-doc libxcb-doc libxext-doc 235s libxt-doc ncbi-blast+ 235s Recommended packages: 235s bzip2-doc libgl1-amber-dri libpng-tools mesa-vulkan-drivers | vulkan-icd 235s ncbi-blast+ 235s The following NEW packages will be installed: 235s autopkgtest-satdep libbrotli-dev libbz2-dev libdrm-amdgpu1 libdrm-nouveau2 235s libdrm-radeon1 libexpat1-dev libfontconfig-dev libfontconfig1-dev 235s libfreetype-dev libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libglu1-mesa 235s libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libice-dev 235s libice6 libllvm17t64 libmotif-common libmotif-dev libmrm4 libncbi6-dev 235s libncbi6t64 libopengl-dev libopengl0 libpkgconf3 libpng-dev libsm-dev libsm6 235s libuil4 libvibrant6-dev libvibrant6t64 libvulkan1 libx11-dev libx11-xcb1 235s libxau-dev libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 235s libxcb-randr0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1-dev 235s libxdmcp-dev libxext-dev libxfixes3 libxft-dev libxft2 libxm4 libxmu-dev 235s libxmu-headers libxmu6 libxrender-dev libxrender1 libxshmfence1 libxt-dev 235s libxt6t64 libxxf86vm1 ncbi-cn3d ncbi-data ncbi-rrna-data ncbi-tools-bin 235s ncbi-tools-x11 pkgconf pkgconf-bin uil uuid-dev x11-common x11proto-dev 235s xorg-sgml-doctools xtrans-dev zlib1g-dev 235s 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 235s Need to get 117 MB/117 MB of archives. 235s After this operation, 671 MB of additional disk space will be used. 235s Get:1 /tmp/autopkgtest.fHhJ49/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [764 B] 235s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 235s Get:3 http://ftpmaster.internal/ubuntu oracular/universe s390x libmotif-common all 2.3.8-3.1build1 [10.1 kB] 235s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 235s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 235s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libice6 s390x 2:1.0.10-1build3 [44.8 kB] 236s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libsm6 s390x 2:1.2.3-1build3 [17.7 kB] 236s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 236s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB] 237s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x libxm4 s390x 2.3.8-3.1build1 [1178 kB] 239s Get:11 http://ftpmaster.internal/ubuntu oracular/universe s390x libmrm4 s390x 2.3.8-3.1build1 [67.8 kB] 239s Get:12 http://ftpmaster.internal/ubuntu oracular/universe s390x libuil4 s390x 2.3.8-3.1build1 [148 kB] 240s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libbrotli-dev s390x 1.1.0-2build2 [394 kB] 240s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libbz2-dev s390x 1.0.8-5.1 [39.4 kB] 240s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-amdgpu1 s390x 2.4.121-2 [21.3 kB] 240s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-nouveau2 s390x 2.4.121-2 [18.1 kB] 240s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-radeon1 s390x 2.4.121-2 [22.2 kB] 240s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libexpat1-dev s390x 2.6.2-1 [146 kB] 240s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 241s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x libpng-dev s390x 1.6.43-5build1 [277 kB] 242s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libfreetype-dev s390x 2.13.2+dfsg-1build3 [611 kB] 242s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x uuid-dev s390x 2.39.3-9ubuntu6 [34.2 kB] 242s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x libpkgconf3 s390x 1.8.1-3 [30.8 kB] 242s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x pkgconf-bin s390x 1.8.1-3 [21.4 kB] 242s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x pkgconf s390x 1.8.1-3 [16.8 kB] 242s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x libfontconfig-dev s390x 2.15.0-1.1ubuntu2 [172 kB] 243s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x libfontconfig1-dev s390x 2.15.0-1.1ubuntu2 [1844 B] 243s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 243s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libglapi-mesa s390x 24.0.9-0ubuntu2 [65.9 kB] 243s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libx11-xcb1 s390x 2:1.8.7-1build1 [7826 B] 243s Get:31 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B] 243s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 243s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 243s Get:34 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 243s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 243s Get:36 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 243s Get:37 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 243s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 243s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 243s Get:40 http://ftpmaster.internal/ubuntu oracular/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 243s Get:41 http://ftpmaster.internal/ubuntu oracular/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 243s Get:42 http://ftpmaster.internal/ubuntu oracular/main s390x libvulkan1 s390x 1.3.283.0-1 [156 kB] 243s Get:43 http://ftpmaster.internal/ubuntu oracular/main s390x libllvm17t64 s390x 1:17.0.6-12 [31.0 MB] 250s Get:44 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1-mesa-dri s390x 24.0.9-0ubuntu2 [7077 kB] 250s Get:45 http://ftpmaster.internal/ubuntu oracular/main s390x libglx-mesa0 s390x 24.0.9-0ubuntu2 [174 kB] 250s Get:46 http://ftpmaster.internal/ubuntu oracular/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 250s Get:47 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 250s Get:48 http://ftpmaster.internal/ubuntu oracular/main s390x xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] 250s Get:49 http://ftpmaster.internal/ubuntu oracular/main s390x x11proto-dev all 2024.1-1 [606 kB] 251s Get:50 http://ftpmaster.internal/ubuntu oracular/main s390x libxau-dev s390x 1:1.0.9-1build6 [9812 B] 251s Get:51 http://ftpmaster.internal/ubuntu oracular/main s390x libxdmcp-dev s390x 1:1.1.3-0ubuntu6 [26.9 kB] 251s Get:52 http://ftpmaster.internal/ubuntu oracular/main s390x xtrans-dev all 1.4.0-1 [68.9 kB] 251s Get:53 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb1-dev s390x 1.17.0-2 [88.9 kB] 251s Get:54 http://ftpmaster.internal/ubuntu oracular/main s390x libx11-dev s390x 2:1.8.7-1build1 [763 kB] 251s Get:55 http://ftpmaster.internal/ubuntu oracular/main s390x libglx-dev s390x 1.7.0-1build1 [14.2 kB] 251s Get:56 http://ftpmaster.internal/ubuntu oracular/main s390x libgl-dev s390x 1.7.0-1build1 [102 kB] 251s Get:57 http://ftpmaster.internal/ubuntu oracular/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 251s Get:58 http://ftpmaster.internal/ubuntu oracular/main s390x libglu1-mesa s390x 9.0.2-1.1build1 [176 kB] 251s Get:59 http://ftpmaster.internal/ubuntu oracular/main s390x libopengl-dev s390x 1.7.0-1build1 [3446 B] 251s Get:60 http://ftpmaster.internal/ubuntu oracular/main s390x libglu1-mesa-dev s390x 9.0.2-1.1build1 [265 kB] 251s Get:61 http://ftpmaster.internal/ubuntu oracular/main s390x libice-dev s390x 2:1.0.10-1build3 [54.2 kB] 251s Get:62 http://ftpmaster.internal/ubuntu oracular/universe s390x ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] 251s Get:63 http://ftpmaster.internal/ubuntu oracular/universe s390x libncbi6t64 s390x 6.1.20170106+dfsg2-2 [4625 kB] 251s Get:64 http://ftpmaster.internal/ubuntu oracular/universe s390x libncbi6-dev s390x 6.1.20170106+dfsg2-2 [6275 kB] 252s Get:65 http://ftpmaster.internal/ubuntu oracular/main s390x libsm-dev s390x 2:1.2.3-1build3 [20.1 kB] 252s Get:66 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender-dev s390x 1:0.9.10-1.1build1 [27.8 kB] 252s Get:67 http://ftpmaster.internal/ubuntu oracular/main s390x libxft-dev s390x 2.3.6-1build1 [69.1 kB] 252s Get:68 http://ftpmaster.internal/ubuntu oracular/main s390x libxt-dev s390x 1:1.2.1-1.2build1 [410 kB] 252s Get:69 http://ftpmaster.internal/ubuntu oracular/universe s390x uil s390x 2.3.8-3.1build1 [7440 B] 252s Get:70 http://ftpmaster.internal/ubuntu oracular/universe s390x libmotif-dev s390x 2.3.8-3.1build1 [2710 kB] 252s Get:71 http://ftpmaster.internal/ubuntu oracular/universe s390x libvibrant6t64 s390x 6.1.20170106+dfsg2-2 [1389 kB] 252s Get:72 http://ftpmaster.internal/ubuntu oracular/main s390x libxext-dev s390x 2:1.3.4-1build2 [85.7 kB] 252s Get:73 http://ftpmaster.internal/ubuntu oracular/main s390x libxmu-headers all 2:1.1.3-3build2 [53.0 kB] 252s Get:74 http://ftpmaster.internal/ubuntu oracular/main s390x libxmu-dev s390x 2:1.1.3-3build2 [60.2 kB] 252s Get:75 http://ftpmaster.internal/ubuntu oracular/universe s390x libvibrant6-dev s390x 6.1.20170106+dfsg2-2 [1710 kB] 252s Get:76 http://ftpmaster.internal/ubuntu oracular/universe s390x ncbi-cn3d s390x 3.0.20170106+dfsg2-2 [9964 B] 252s Get:77 http://ftpmaster.internal/ubuntu oracular/universe s390x ncbi-rrna-data all 6.1.20170106+dfsg2-2 [46.3 MB] 255s Get:78 http://ftpmaster.internal/ubuntu oracular/universe s390x ncbi-tools-bin s390x 6.1.20170106+dfsg2-2 [1903 kB] 255s Get:79 http://ftpmaster.internal/ubuntu oracular/universe s390x ncbi-tools-x11 s390x 6.1.20170106+dfsg2-2 [1032 kB] 255s Fetched 117 MB in 20s (5831 kB/s) 255s Selecting previously unselected package x11-common. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 255s Preparing to unpack .../x11-common_1%3a7.7+23ubuntu3_all.deb ... 255s Unpacking x11-common (1:7.7+23ubuntu3) ... 255s Setting up x11-common (1:7.7+23ubuntu3) ... 256s Selecting previously unselected package libmotif-common. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54749 files and directories currently installed.) 256s Preparing to unpack .../00-libmotif-common_2.3.8-3.1build1_all.deb ... 256s Unpacking libmotif-common (2.3.8-3.1build1) ... 256s Selecting previously unselected package libxrender1:s390x. 256s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 256s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 256s Selecting previously unselected package libxft2:s390x. 256s Preparing to unpack .../02-libxft2_2.3.6-1build1_s390x.deb ... 256s Unpacking libxft2:s390x (2.3.6-1build1) ... 256s Selecting previously unselected package libice6:s390x. 256s Preparing to unpack .../03-libice6_2%3a1.0.10-1build3_s390x.deb ... 256s Unpacking libice6:s390x (2:1.0.10-1build3) ... 256s Selecting previously unselected package libsm6:s390x. 256s Preparing to unpack .../04-libsm6_2%3a1.2.3-1build3_s390x.deb ... 256s Unpacking libsm6:s390x (2:1.2.3-1build3) ... 256s Selecting previously unselected package libxt6t64:s390x. 256s Preparing to unpack .../05-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 256s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 256s Selecting previously unselected package libxmu6:s390x. 256s Preparing to unpack .../06-libxmu6_2%3a1.1.3-3build2_s390x.deb ... 256s Unpacking libxmu6:s390x (2:1.1.3-3build2) ... 256s Selecting previously unselected package libxm4:s390x. 256s Preparing to unpack .../07-libxm4_2.3.8-3.1build1_s390x.deb ... 256s Unpacking libxm4:s390x (2.3.8-3.1build1) ... 256s Selecting previously unselected package libmrm4:s390x. 256s Preparing to unpack .../08-libmrm4_2.3.8-3.1build1_s390x.deb ... 256s Unpacking libmrm4:s390x (2.3.8-3.1build1) ... 256s Selecting previously unselected package libuil4:s390x. 256s Preparing to unpack .../09-libuil4_2.3.8-3.1build1_s390x.deb ... 256s Unpacking libuil4:s390x (2.3.8-3.1build1) ... 256s Selecting previously unselected package libbrotli-dev:s390x. 256s Preparing to unpack .../10-libbrotli-dev_1.1.0-2build2_s390x.deb ... 256s Unpacking libbrotli-dev:s390x (1.1.0-2build2) ... 256s Selecting previously unselected package libbz2-dev:s390x. 256s Preparing to unpack .../11-libbz2-dev_1.0.8-5.1_s390x.deb ... 256s Unpacking libbz2-dev:s390x (1.0.8-5.1) ... 256s Selecting previously unselected package libdrm-amdgpu1:s390x. 256s Preparing to unpack .../12-libdrm-amdgpu1_2.4.121-2_s390x.deb ... 256s Unpacking libdrm-amdgpu1:s390x (2.4.121-2) ... 256s Selecting previously unselected package libdrm-nouveau2:s390x. 256s Preparing to unpack .../13-libdrm-nouveau2_2.4.121-2_s390x.deb ... 256s Unpacking libdrm-nouveau2:s390x (2.4.121-2) ... 256s Selecting previously unselected package libdrm-radeon1:s390x. 256s Preparing to unpack .../14-libdrm-radeon1_2.4.121-2_s390x.deb ... 256s Unpacking libdrm-radeon1:s390x (2.4.121-2) ... 256s Selecting previously unselected package libexpat1-dev:s390x. 256s Preparing to unpack .../15-libexpat1-dev_2.6.2-1_s390x.deb ... 256s Unpacking libexpat1-dev:s390x (2.6.2-1) ... 256s Selecting previously unselected package zlib1g-dev:s390x. 256s Preparing to unpack .../16-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ... 256s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 256s Selecting previously unselected package libpng-dev:s390x. 256s Preparing to unpack .../17-libpng-dev_1.6.43-5build1_s390x.deb ... 256s Unpacking libpng-dev:s390x (1.6.43-5build1) ... 256s Selecting previously unselected package libfreetype-dev:s390x. 256s Preparing to unpack .../18-libfreetype-dev_2.13.2+dfsg-1build3_s390x.deb ... 256s Unpacking libfreetype-dev:s390x (2.13.2+dfsg-1build3) ... 256s Selecting previously unselected package uuid-dev:s390x. 256s Preparing to unpack .../19-uuid-dev_2.39.3-9ubuntu6_s390x.deb ... 256s Unpacking uuid-dev:s390x (2.39.3-9ubuntu6) ... 256s Selecting previously unselected package libpkgconf3:s390x. 256s Preparing to unpack .../20-libpkgconf3_1.8.1-3_s390x.deb ... 256s Unpacking libpkgconf3:s390x (1.8.1-3) ... 256s Selecting previously unselected package pkgconf-bin. 256s Preparing to unpack .../21-pkgconf-bin_1.8.1-3_s390x.deb ... 256s Unpacking pkgconf-bin (1.8.1-3) ... 256s Selecting previously unselected package pkgconf:s390x. 256s Preparing to unpack .../22-pkgconf_1.8.1-3_s390x.deb ... 256s Unpacking pkgconf:s390x (1.8.1-3) ... 256s Selecting previously unselected package libfontconfig-dev:s390x. 256s Preparing to unpack .../23-libfontconfig-dev_2.15.0-1.1ubuntu2_s390x.deb ... 256s Unpacking libfontconfig-dev:s390x (2.15.0-1.1ubuntu2) ... 256s Selecting previously unselected package libfontconfig1-dev:s390x. 256s Preparing to unpack .../24-libfontconfig1-dev_2.15.0-1.1ubuntu2_s390x.deb ... 256s Unpacking libfontconfig1-dev:s390x (2.15.0-1.1ubuntu2) ... 256s Selecting previously unselected package libglvnd0:s390x. 256s Preparing to unpack .../25-libglvnd0_1.7.0-1build1_s390x.deb ... 256s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 256s Selecting previously unselected package libglapi-mesa:s390x. 256s Preparing to unpack .../26-libglapi-mesa_24.0.9-0ubuntu2_s390x.deb ... 256s Unpacking libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 256s Selecting previously unselected package libx11-xcb1:s390x. 256s Preparing to unpack .../27-libx11-xcb1_2%3a1.8.7-1build1_s390x.deb ... 256s Unpacking libx11-xcb1:s390x (2:1.8.7-1build1) ... 256s Selecting previously unselected package libxcb-dri2-0:s390x. 256s Preparing to unpack .../28-libxcb-dri2-0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-dri2-0:s390x (1.17.0-2) ... 256s Selecting previously unselected package libxcb-dri3-0:s390x. 256s Preparing to unpack .../29-libxcb-dri3-0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 256s Selecting previously unselected package libxcb-glx0:s390x. 256s Preparing to unpack .../30-libxcb-glx0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 256s Selecting previously unselected package libxcb-present0:s390x. 256s Preparing to unpack .../31-libxcb-present0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-present0:s390x (1.17.0-2) ... 256s Selecting previously unselected package libxcb-randr0:s390x. 256s Preparing to unpack .../32-libxcb-randr0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 256s Selecting previously unselected package libxcb-shm0:s390x. 256s Preparing to unpack .../33-libxcb-shm0_1.17.0-2_s390x.deb ... 256s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 257s Selecting previously unselected package libxcb-sync1:s390x. 257s Preparing to unpack .../34-libxcb-sync1_1.17.0-2_s390x.deb ... 257s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 257s Selecting previously unselected package libxcb-xfixes0:s390x. 257s Preparing to unpack .../35-libxcb-xfixes0_1.17.0-2_s390x.deb ... 257s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 257s Selecting previously unselected package libxfixes3:s390x. 257s Preparing to unpack .../36-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 257s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 257s Selecting previously unselected package libxshmfence1:s390x. 257s Preparing to unpack .../37-libxshmfence1_1.3-1build5_s390x.deb ... 257s Unpacking libxshmfence1:s390x (1.3-1build5) ... 257s Selecting previously unselected package libxxf86vm1:s390x. 257s Preparing to unpack .../38-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 257s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 257s Selecting previously unselected package libvulkan1:s390x. 257s Preparing to unpack .../39-libvulkan1_1.3.283.0-1_s390x.deb ... 257s Unpacking libvulkan1:s390x (1.3.283.0-1) ... 257s Selecting previously unselected package libllvm17t64:s390x. 257s Preparing to unpack .../40-libllvm17t64_1%3a17.0.6-12_s390x.deb ... 257s Unpacking libllvm17t64:s390x (1:17.0.6-12) ... 258s Selecting previously unselected package libgl1-mesa-dri:s390x. 258s Preparing to unpack .../41-libgl1-mesa-dri_24.0.9-0ubuntu2_s390x.deb ... 258s Unpacking libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 258s Selecting previously unselected package libglx-mesa0:s390x. 258s Preparing to unpack .../42-libglx-mesa0_24.0.9-0ubuntu2_s390x.deb ... 258s Unpacking libglx-mesa0:s390x (24.0.9-0ubuntu2) ... 258s Selecting previously unselected package libglx0:s390x. 258s Preparing to unpack .../43-libglx0_1.7.0-1build1_s390x.deb ... 258s Unpacking libglx0:s390x (1.7.0-1build1) ... 258s Selecting previously unselected package libgl1:s390x. 258s Preparing to unpack .../44-libgl1_1.7.0-1build1_s390x.deb ... 258s Unpacking libgl1:s390x (1.7.0-1build1) ... 258s Selecting previously unselected package xorg-sgml-doctools. 258s Preparing to unpack .../45-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... 258s Unpacking xorg-sgml-doctools (1:1.11-1.1) ... 258s Selecting previously unselected package x11proto-dev. 258s Preparing to unpack .../46-x11proto-dev_2024.1-1_all.deb ... 258s Unpacking x11proto-dev (2024.1-1) ... 258s Selecting previously unselected package libxau-dev:s390x. 258s Preparing to unpack .../47-libxau-dev_1%3a1.0.9-1build6_s390x.deb ... 258s Unpacking libxau-dev:s390x (1:1.0.9-1build6) ... 258s Selecting previously unselected package libxdmcp-dev:s390x. 258s Preparing to unpack .../48-libxdmcp-dev_1%3a1.1.3-0ubuntu6_s390x.deb ... 258s Unpacking libxdmcp-dev:s390x (1:1.1.3-0ubuntu6) ... 258s Selecting previously unselected package xtrans-dev. 258s Preparing to unpack .../49-xtrans-dev_1.4.0-1_all.deb ... 258s Unpacking xtrans-dev (1.4.0-1) ... 258s Selecting previously unselected package libxcb1-dev:s390x. 258s Preparing to unpack .../50-libxcb1-dev_1.17.0-2_s390x.deb ... 258s Unpacking libxcb1-dev:s390x (1.17.0-2) ... 258s Selecting previously unselected package libx11-dev:s390x. 258s Preparing to unpack .../51-libx11-dev_2%3a1.8.7-1build1_s390x.deb ... 258s Unpacking libx11-dev:s390x (2:1.8.7-1build1) ... 258s Selecting previously unselected package libglx-dev:s390x. 258s Preparing to unpack .../52-libglx-dev_1.7.0-1build1_s390x.deb ... 258s Unpacking libglx-dev:s390x (1.7.0-1build1) ... 259s Selecting previously unselected package libgl-dev:s390x. 259s Preparing to unpack .../53-libgl-dev_1.7.0-1build1_s390x.deb ... 259s Unpacking libgl-dev:s390x (1.7.0-1build1) ... 259s Selecting previously unselected package libopengl0:s390x. 259s Preparing to unpack .../54-libopengl0_1.7.0-1build1_s390x.deb ... 259s Unpacking libopengl0:s390x (1.7.0-1build1) ... 259s Selecting previously unselected package libglu1-mesa:s390x. 259s Preparing to unpack .../55-libglu1-mesa_9.0.2-1.1build1_s390x.deb ... 259s Unpacking libglu1-mesa:s390x (9.0.2-1.1build1) ... 259s Selecting previously unselected package libopengl-dev:s390x. 259s Preparing to unpack .../56-libopengl-dev_1.7.0-1build1_s390x.deb ... 259s Unpacking libopengl-dev:s390x (1.7.0-1build1) ... 259s Selecting previously unselected package libglu1-mesa-dev:s390x. 259s Preparing to unpack .../57-libglu1-mesa-dev_9.0.2-1.1build1_s390x.deb ... 259s Unpacking libglu1-mesa-dev:s390x (9.0.2-1.1build1) ... 259s Selecting previously unselected package libice-dev:s390x. 259s Preparing to unpack .../58-libice-dev_2%3a1.0.10-1build3_s390x.deb ... 259s Unpacking libice-dev:s390x (2:1.0.10-1build3) ... 259s Selecting previously unselected package ncbi-data. 259s Preparing to unpack .../59-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... 259s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... 259s Selecting previously unselected package libncbi6t64:s390x. 259s Preparing to unpack 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.../65-libxt-dev_1%3a1.2.1-1.2build1_s390x.deb ... 259s Unpacking libxt-dev:s390x (1:1.2.1-1.2build1) ... 259s Selecting previously unselected package uil. 259s Preparing to unpack .../66-uil_2.3.8-3.1build1_s390x.deb ... 259s Unpacking uil (2.3.8-3.1build1) ... 259s Selecting previously unselected package libmotif-dev:s390x. 259s Preparing to unpack .../67-libmotif-dev_2.3.8-3.1build1_s390x.deb ... 259s Unpacking libmotif-dev:s390x (2.3.8-3.1build1) ... 260s Selecting previously unselected package libvibrant6t64:s390x. 260s Preparing to unpack .../68-libvibrant6t64_6.1.20170106+dfsg2-2_s390x.deb ... 260s Unpacking libvibrant6t64:s390x (6.1.20170106+dfsg2-2) ... 260s Selecting previously unselected package libxext-dev:s390x. 260s Preparing to unpack .../69-libxext-dev_2%3a1.3.4-1build2_s390x.deb ... 260s Unpacking libxext-dev:s390x (2:1.3.4-1build2) ... 260s Selecting previously unselected package libxmu-headers. 260s Preparing to unpack .../70-libxmu-headers_2%3a1.1.3-3build2_all.deb ... 260s Unpacking libxmu-headers (2:1.1.3-3build2) ... 260s Selecting previously unselected package libxmu-dev:s390x. 260s Preparing to unpack .../71-libxmu-dev_2%3a1.1.3-3build2_s390x.deb ... 260s Unpacking libxmu-dev:s390x (2:1.1.3-3build2) ... 260s Selecting previously unselected package libvibrant6-dev:s390x. 260s Preparing to unpack .../72-libvibrant6-dev_6.1.20170106+dfsg2-2_s390x.deb ... 260s Unpacking libvibrant6-dev:s390x (6.1.20170106+dfsg2-2) ... 260s Selecting previously unselected package ncbi-cn3d. 260s Preparing to unpack .../73-ncbi-cn3d_3.0.20170106+dfsg2-2_s390x.deb ... 260s Unpacking ncbi-cn3d (3.0.20170106+dfsg2-2) ... 260s Selecting previously unselected package ncbi-rrna-data. 260s Preparing to unpack .../74-ncbi-rrna-data_6.1.20170106+dfsg2-2_all.deb ... 260s Unpacking ncbi-rrna-data (6.1.20170106+dfsg2-2) ... 266s Selecting previously unselected package ncbi-tools-bin. 266s Preparing to unpack .../75-ncbi-tools-bin_6.1.20170106+dfsg2-2_s390x.deb ... 266s Unpacking ncbi-tools-bin (6.1.20170106+dfsg2-2) ... 266s Selecting previously unselected package ncbi-tools-x11. 266s Preparing to unpack .../76-ncbi-tools-x11_6.1.20170106+dfsg2-2_s390x.deb ... 266s Unpacking ncbi-tools-x11 (6.1.20170106+dfsg2-2) ... 266s Selecting previously unselected package autopkgtest-satdep. 266s Preparing to unpack .../77-1-autopkgtest-satdep.deb ... 266s Unpacking autopkgtest-satdep (0) ... 266s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 266s Setting up ncbi-data (6.1.20170106+dfsg2-2) ... 266s Setting up libx11-xcb1:s390x (2:1.8.7-1build1) ... 266s Setting up libice6:s390x (2:1.0.10-1build3) ... 266s Setting up libdrm-nouveau2:s390x (2.4.121-2) ... 266s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 266s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 266s Setting up libdrm-radeon1:s390x (2.4.121-2) ... 266s Setting up libglvnd0:s390x (1.7.0-1build1) ... 266s Setting up libxcb-glx0:s390x (1.17.0-2) ... 266s Setting up libxcb-shm0:s390x (1.17.0-2) ... 266s Setting up libmotif-common (2.3.8-3.1build1) ... 266s Setting up libopengl0:s390x (1.7.0-1build1) ... 266s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 266s Setting up libxcb-present0:s390x (1.17.0-2) ... 266s Setting up libncbi6t64:s390x (6.1.20170106+dfsg2-2) ... 266s Setting up xtrans-dev (1.4.0-1) ... 266s Setting up libpkgconf3:s390x (1.8.1-3) ... 266s Setting up libllvm17t64:s390x (1:17.0.6-12) ... 266s Setting up libexpat1-dev:s390x (2.6.2-1) ... 266s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 266s Setting up libxcb-sync1:s390x (1.17.0-2) ... 266s Setting up uuid-dev:s390x (2.39.3-9ubuntu6) ... 266s Setting up pkgconf-bin (1.8.1-3) ... 266s Setting up libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 266s Setting up libvulkan1:s390x (1.3.283.0-1) ... 266s Setting up libxcb-dri2-0:s390x (1.17.0-2) ... 266s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 266s Setting up ncbi-tools-bin (6.1.20170106+dfsg2-2) ... 266s Setting up libxshmfence1:s390x (1.3-1build5) ... 266s Setting up libxcb-randr0:s390x (1.17.0-2) ... 266s Setting up xorg-sgml-doctools (1:1.11-1.1) ... 266s Setting up libglu1-mesa:s390x (9.0.2-1.1build1) ... 266s Setting up libopengl-dev:s390x (1.7.0-1build1) ... 266s Setting up libsm6:s390x (2:1.2.3-1build3) ... 266s Setting up libbrotli-dev:s390x (1.1.0-2build2) ... 266s Setting up ncbi-rrna-data (6.1.20170106+dfsg2-2) ... 266s Setting up libdrm-amdgpu1:s390x (2.4.121-2) ... 266s Setting up libbz2-dev:s390x (1.0.8-5.1) ... 266s Setting up x11proto-dev (2024.1-1) ... 266s Setting up libncbi6-dev:s390x (6.1.20170106+dfsg2-2) ... 266s Setting up libxft2:s390x (2.3.6-1build1) ... 266s Setting up libxau-dev:s390x (1:1.0.9-1build6) ... 266s Setting up libice-dev:s390x (2:1.0.10-1build3) ... 266s Setting up libsm-dev:s390x (2:1.2.3-1build3) ... 266s Setting up libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 266s Setting up libpng-dev:s390x (1.6.43-5build1) ... 266s Setting up pkgconf:s390x (1.8.1-3) ... 266s Setting up libfreetype-dev:s390x (2.13.2+dfsg-1build3) ... 266s Setting up libxdmcp-dev:s390x (1:1.1.3-0ubuntu6) ... 266s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 266s Setting up libxmu6:s390x (2:1.1.3-3build2) ... 266s Setting up libglx-mesa0:s390x (24.0.9-0ubuntu2) ... 266s Setting up libxcb1-dev:s390x (1.17.0-2) ... 266s Setting up libglx0:s390x (1.7.0-1build1) ... 266s Setting up libfontconfig-dev:s390x (2.15.0-1.1ubuntu2) ... 266s Setting up libx11-dev:s390x (2:1.8.7-1build1) ... 266s Setting up libgl1:s390x (1.7.0-1build1) ... 266s Setting up libxt-dev:s390x (1:1.2.1-1.2build1) ... 266s Setting up libxext-dev:s390x (2:1.3.4-1build2) ... 266s Setting up libglx-dev:s390x (1.7.0-1build1) ... 266s Setting up libxrender-dev:s390x (1:0.9.10-1.1build1) ... 266s Setting up libgl-dev:s390x (1.7.0-1build1) ... 266s Setting up libxm4:s390x (2.3.8-3.1build1) ... 266s Setting up libxft-dev:s390x (2.3.6-1build1) ... 266s Setting up libxmu-headers (2:1.1.3-3build2) ... 266s Setting up libfontconfig1-dev:s390x (2.15.0-1.1ubuntu2) ... 266s Setting up libxmu-dev:s390x (2:1.1.3-3build2) ... 266s Setting up libvibrant6t64:s390x (6.1.20170106+dfsg2-2) ... 266s Setting up libmrm4:s390x (2.3.8-3.1build1) ... 266s Setting up libglu1-mesa-dev:s390x (9.0.2-1.1build1) ... 266s Setting up libuil4:s390x (2.3.8-3.1build1) ... 266s Setting up uil (2.3.8-3.1build1) ... 266s Setting up libmotif-dev:s390x (2.3.8-3.1build1) ... 266s Setting up ncbi-cn3d (3.0.20170106+dfsg2-2) ... 266s update-alternatives: using /usr/bin/Cn3D-3.0 to provide /usr/bin/Cn3D (Cn3D) in auto mode 266s Setting up ncbi-tools-x11 (6.1.20170106+dfsg2-2) ... 266s Setting up libvibrant6-dev:s390x (6.1.20170106+dfsg2-2) ... 266s Setting up autopkgtest-satdep (0) ... 266s Processing triggers for man-db (2.12.1-2) ... 267s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 272s (Reading database ... 58128 files and directories currently installed.) 272s Removing autopkgtest-satdep (0) ... 273s autopkgtest [01:00:57]: test run-unit-test: [----------------------- 273s ---asn2asn test--- 274s ---asn2all test--- 275s ---asn2fsa test--- 275s ---asn2gb test--- 276s ---asn2idx test--- 276s ---asn2xml test--- 277s ---cleanasn test--- 277s ---gene2xml test--- 279s ---vecscreen test--- 284s ---asndisc test--- 288s ---asnval test--- 289s ---asnmacro test--- 293s ---asntool test--- 293s ---indexpub test--- 293s ---getpub test--- 293s ---getmesh test--- 293s ---debruijn test--- 293s ---gil2bin test--- 293s ---makeset test--- 293s ---nps2gps test--- 293s [nps2gps] Processing X66994.1 (idfetch_g1234.npset) 293s ---tbl2asn test--- 293s ---checksub test--- 293s ---fa2htgs test--- 293s ---subfuse test--- 293s [subfuse] Processing checksub 293s 293s [subfuse] Processing Sc_16 293s 293s ---trna2sap test--- 293s ---trna2tbl test--- 293s ---spidey test--- 294s autopkgtest [01:01:18]: test run-unit-test: -----------------------] 294s autopkgtest [01:01:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 294s run-unit-test PASS 295s autopkgtest [01:01:19]: @@@@@@@@@@@@@@@@@@@@ summary 295s run-unit-test PASS 312s nova [W] Using flock in scalingstack-bos01-s390x 312s Creating nova instance adt-oracular-s390x-ncbi-tools6-20240713-005623-juju-7f2275-prod-proposed-migration-environment-2-cbd723e2-ba1a-4a13-a755-55c715ea07b2 from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)...