0s autopkgtest [23:52:10]: starting date and time: 2024-07-12 23:52:10+0000 0s autopkgtest [23:52:10]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [23:52:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1jdoila1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-11.secgroup --name adt-oracular-s390x-libssw-20240712-235210-juju-7f2275-prod-proposed-migration-environment-2-c64c3cf1-9b99-4a15-8496-abc509b1d21d --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 105s autopkgtest [23:53:55]: testbed dpkg architecture: s390x 105s autopkgtest [23:53:55]: testbed apt version: 2.9.6 105s autopkgtest [23:53:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 106s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.4 kB] 106s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [352 kB] 107s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 107s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 107s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 107s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 107s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 107s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 107s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [402 kB] 107s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 107s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1788 B] 107s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 107s Fetched 1040 kB in 1s (1192 kB/s) 107s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s The following packages will be upgraded: 110s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 110s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 9392 kB of archives. 110s After this operation, 109 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 110s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 111s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 111s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 111s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 112s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 113s Preconfiguring packages ... 113s Fetched 9392 kB in 2s (4209 kB/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 113s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 113s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 113s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 113s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 113s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 113s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 113s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 113s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 113s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 113s Error: Could not restart systemd, systemd binary not working 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 113s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 113s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 113s Setting up libc-bin (2.39-3.1ubuntu3) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 113s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 113s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 114s Setting up locales (2.39-3.1ubuntu3) ... 114s Generating locales (this might take a while)... 116s en_US.UTF-8... done 116s Generation complete. 116s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 116s Setting up libc-devtools (2.39-3.1ubuntu3) ... 116s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 116s Processing triggers for man-db (2.12.1-2) ... 116s Processing triggers for systemd (256-1ubuntu1) ... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 118s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB] 118s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 119s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 119s Get:5 http://ftpmaster.internal/ubuntu oracular/multiverse Sources [301 kB] 119s Get:6 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.2 MB] 122s Get:7 http://ftpmaster.internal/ubuntu oracular/main Sources [1377 kB] 122s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1341 kB] 123s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x c-n-f Metadata [30.9 kB] 123s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.9 MB] 123s Get:11 http://ftpmaster.internal/ubuntu oracular/multiverse s390x Packages [167 kB] 127s Fetched 38.5 MB in 9s (4329 kB/s) 128s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 128s The following packages will be upgraded: 128s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 128s inetutils-telnet libbinutils libctf-nobfd0 libctf0 libglib2.0-0t64 128s libglib2.0-data libnghttp2-14 libnss3 libsframe1 libssl3t64 openssh-client 128s openssh-server openssh-sftp-server openssl telnet 128s 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Need to get 11.0 MB of archives. 128s After this operation, 274 kB of additional disk space will be used. 128s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 129s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 129s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 129s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 129s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 129s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 129s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 129s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 129s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 129s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 129s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 129s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 129s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 129s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 129s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 129s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 129s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 129s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 129s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 130s Preconfiguring packages ... 130s Fetched 11.0 MB in 1s (9502 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 130s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 130s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 130s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 130s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 130s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 130s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 130s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 130s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 130s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 130s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 130s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 130s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 130s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 130s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 130s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 130s Preparing to unpack .../06-openssl_3.2.2-1ubuntu1_s390x.deb ... 130s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 130s Preparing to unpack .../07-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 130s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 130s Preparing to unpack .../08-libnghttp2-14_1.62.1-2_s390x.deb ... 130s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 130s Preparing to unpack .../09-telnet_0.17+2.5-5ubuntu1_all.deb ... 130s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 130s Preparing to unpack .../10-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../11-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../12-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../13-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../14-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../15-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../16-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 130s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 130s Preparing to unpack .../17-libnss3_2%3a3.102-1_s390x.deb ... 130s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 131s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 131s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 131s Setting up libnghttp2-14:s390x (1.62.1-2) ... 131s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 131s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 131s Setting up libnss3:s390x (2:3.102-1) ... 131s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 131s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 131s No schema files found: doing nothing. 131s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 131s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 131s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 131s Setting up openssl (3.2.2-1ubuntu1) ... 131s Installing new version of config file /etc/ssl/openssl.cnf ... 131s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 131s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 131s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 131s Setting up telnet (0.17+2.5-5ubuntu1) ... 131s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 131s Installing new version of config file /etc/pam.d/sshd ... 132s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 132s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 132s Processing triggers for ufw (0.36.2-6) ... 132s Processing triggers for man-db (2.12.1-2) ... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [23:54:23]: rebooting testbed after setup commands that affected boot 137s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 159s autopkgtest [23:54:49]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 161s autopkgtest [23:54:51]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 165s Get:1 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (dsc) [2501 B] 165s Get:2 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (tar) [12.3 MB] 165s Get:3 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (diff) [54.3 kB] 165s gpgv: Signature made Mon Apr 22 09:48:29 2024 UTC 165s gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 165s gpgv: issuer "juliank@ubuntu.com" 165s gpgv: Can't check signature: No public key 165s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-14build1.dsc: no acceptable signature found 166s autopkgtest [23:54:56]: testing package libssw version 1.1-14build1 166s autopkgtest [23:54:56]: build not needed 168s autopkgtest [23:54:58]: test build-lib: preparing testbed 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Starting pkgProblemResolver with broken count: 0 169s Starting 2 pkgProblemResolver with broken count: 0 169s Done 169s The following additional packages will be installed: 169s build-essential cpp cpp-13 cpp-13-s390x-linux-gnu cpp-s390x-linux-gnu g++ 169s g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-13 gcc-13-base 169s gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu libasan8 libatomic1 libcc1-0 169s libgcc-13-dev libgomp1 libisl23 libitm1 libmpc3 libssw-dev libssw0 169s libstdc++-13-dev libubsan1 zlib1g-dev 169s Suggested packages: 169s cpp-doc gcc-13-locales cpp-13-doc g++-multilib g++-13-multilib gcc-13-doc 169s gcc-multilib manpages-dev autoconf automake libtool flex bison gdb gcc-doc 169s gcc-13-multilib gdb-s390x-linux-gnu libstdc++-13-doc 169s The following NEW packages will be installed: 169s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-s390x-linux-gnu 169s cpp-s390x-linux-gnu g++ g++-13 g++-13-s390x-linux-gnu g++-s390x-linux-gnu 169s gcc gcc-13 gcc-13-base gcc-13-s390x-linux-gnu gcc-s390x-linux-gnu libasan8 169s libatomic1 libcc1-0 libgcc-13-dev libgomp1 libisl23 libitm1 libmpc3 169s libssw-dev libssw0 libstdc++-13-dev libubsan1 zlib1g-dev 169s 0 upgraded, 28 newly installed, 0 to remove and 0 not upgraded. 169s Need to get 50.6 MB/50.6 MB of archives. 169s After this operation, 163 MB of additional disk space will be used. 169s Get:1 /tmp/autopkgtest.VnDt4w/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [732 B] 170s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13-base s390x 13.2.0-23ubuntu4 [48.9 kB] 170s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libisl23 s390x 0.26-3build1 [713 kB] 170s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB] 170s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [9939 kB] 170s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-13 s390x 13.2.0-23ubuntu4 [1030 B] 170s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x cpp-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [5308 B] 170s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x cpp s390x 4:13.2.0-7ubuntu1 [22.4 kB] 170s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libcc1-0 s390x 14.1.0-1ubuntu1 [50.7 kB] 170s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 170s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libitm1 s390x 14.1.0-1ubuntu1 [31.1 kB] 170s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libatomic1 s390x 14.1.0-1ubuntu1 [9378 B] 170s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libasan8 s390x 14.1.0-1ubuntu1 [3003 kB] 171s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libubsan1 s390x 14.1.0-1ubuntu1 [1189 kB] 171s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libgcc-13-dev s390x 13.2.0-23ubuntu4 [1004 kB] 171s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [19.1 MB] 171s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-13 s390x 13.2.0-23ubuntu4 [472 kB] 171s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x gcc-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [1208 B] 171s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x gcc s390x 4:13.2.0-7ubuntu1 [5014 B] 171s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x libstdc++-13-dev s390x 13.2.0-23ubuntu4 [2494 kB] 171s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x g++-13-s390x-linux-gnu s390x 13.2.0-23ubuntu4 [11.3 MB] 172s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x g++-13 s390x 13.2.0-23ubuntu4 [14.5 kB] 172s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x g++-s390x-linux-gnu s390x 4:13.2.0-7ubuntu1 [956 B] 172s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x g++ s390x 4:13.2.0-7ubuntu1 [1096 B] 172s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 172s Get:26 http://ftpmaster.internal/ubuntu oracular/universe s390x libssw0 s390x 1.1-14build1 [25.9 kB] 172s Get:27 http://ftpmaster.internal/ubuntu oracular/universe s390x libssw-dev s390x 1.1-14build1 [28.1 kB] 172s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 172s Fetched 50.6 MB in 2s (21.8 MB/s) 172s Selecting previously unselected package gcc-13-base:s390x. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 172s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_s390x.deb ... 172s Unpacking gcc-13-base:s390x (13.2.0-23ubuntu4) ... 172s Selecting previously unselected package libisl23:s390x. 172s Preparing to unpack .../01-libisl23_0.26-3build1_s390x.deb ... 172s Unpacking libisl23:s390x (0.26-3build1) ... 172s Selecting previously unselected package libmpc3:s390x. 172s Preparing to unpack .../02-libmpc3_1.3.1-1build1_s390x.deb ... 172s Unpacking libmpc3:s390x (1.3.1-1build1) ... 172s Selecting previously unselected package cpp-13-s390x-linux-gnu. 172s Preparing to unpack .../03-cpp-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 172s Unpacking cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 172s Selecting previously unselected package cpp-13. 172s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_s390x.deb ... 172s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 172s Selecting previously unselected package cpp-s390x-linux-gnu. 172s Preparing to unpack .../05-cpp-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 172s Unpacking cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package cpp. 172s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_s390x.deb ... 172s Unpacking cpp (4:13.2.0-7ubuntu1) ... 172s Selecting previously unselected package libcc1-0:s390x. 172s Preparing to unpack .../07-libcc1-0_14.1.0-1ubuntu1_s390x.deb ... 172s Unpacking libcc1-0:s390x (14.1.0-1ubuntu1) ... 172s Selecting previously unselected package libgomp1:s390x. 172s Preparing to unpack .../08-libgomp1_14.1.0-1ubuntu1_s390x.deb ... 172s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ... 172s Selecting previously unselected package libitm1:s390x. 172s Preparing to unpack .../09-libitm1_14.1.0-1ubuntu1_s390x.deb ... 172s Unpacking libitm1:s390x (14.1.0-1ubuntu1) ... 172s Selecting previously unselected package libatomic1:s390x. 172s Preparing to unpack .../10-libatomic1_14.1.0-1ubuntu1_s390x.deb ... 172s Unpacking libatomic1:s390x (14.1.0-1ubuntu1) ... 172s Selecting previously unselected package libasan8:s390x. 172s Preparing to unpack .../11-libasan8_14.1.0-1ubuntu1_s390x.deb ... 172s Unpacking libasan8:s390x (14.1.0-1ubuntu1) ... 173s Selecting previously unselected package libubsan1:s390x. 173s Preparing to unpack .../12-libubsan1_14.1.0-1ubuntu1_s390x.deb ... 173s Unpacking libubsan1:s390x (14.1.0-1ubuntu1) ... 173s Selecting previously unselected package libgcc-13-dev:s390x. 173s Preparing to unpack .../13-libgcc-13-dev_13.2.0-23ubuntu4_s390x.deb ... 173s Unpacking libgcc-13-dev:s390x (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package gcc-13-s390x-linux-gnu. 173s Preparing to unpack .../14-gcc-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 173s Unpacking gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package gcc-13. 173s Preparing to unpack .../15-gcc-13_13.2.0-23ubuntu4_s390x.deb ... 173s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package gcc-s390x-linux-gnu. 173s Preparing to unpack .../16-gcc-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 173s Unpacking gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package gcc. 173s Preparing to unpack .../17-gcc_4%3a13.2.0-7ubuntu1_s390x.deb ... 173s Unpacking gcc (4:13.2.0-7ubuntu1) ... 173s Selecting previously unselected package libstdc++-13-dev:s390x. 173s Preparing to unpack .../18-libstdc++-13-dev_13.2.0-23ubuntu4_s390x.deb ... 173s Unpacking libstdc++-13-dev:s390x (13.2.0-23ubuntu4) ... 173s Selecting previously unselected package g++-13-s390x-linux-gnu. 173s Preparing to unpack .../19-g++-13-s390x-linux-gnu_13.2.0-23ubuntu4_s390x.deb ... 173s Unpacking g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 174s Selecting previously unselected package g++-13. 174s Preparing to unpack .../20-g++-13_13.2.0-23ubuntu4_s390x.deb ... 174s Unpacking g++-13 (13.2.0-23ubuntu4) ... 174s Selecting previously unselected package g++-s390x-linux-gnu. 174s Preparing to unpack .../21-g++-s390x-linux-gnu_4%3a13.2.0-7ubuntu1_s390x.deb ... 174s Unpacking g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package g++. 174s Preparing to unpack .../22-g++_4%3a13.2.0-7ubuntu1_s390x.deb ... 174s Unpacking g++ (4:13.2.0-7ubuntu1) ... 174s Selecting previously unselected package build-essential. 174s Preparing to unpack .../23-build-essential_12.10ubuntu1_s390x.deb ... 174s Unpacking build-essential (12.10ubuntu1) ... 174s Selecting previously unselected package libssw0:s390x. 174s Preparing to unpack .../24-libssw0_1.1-14build1_s390x.deb ... 174s Unpacking libssw0:s390x (1.1-14build1) ... 174s Selecting previously unselected package libssw-dev:s390x. 174s Preparing to unpack .../25-libssw-dev_1.1-14build1_s390x.deb ... 174s Unpacking libssw-dev:s390x (1.1-14build1) ... 174s Selecting previously unselected package zlib1g-dev:s390x. 174s Preparing to unpack .../26-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ... 174s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 174s Selecting previously unselected package autopkgtest-satdep. 174s Preparing to unpack .../27-1-autopkgtest-satdep.deb ... 174s Unpacking autopkgtest-satdep (0) ... 174s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ... 174s Setting up gcc-13-base:s390x (13.2.0-23ubuntu4) ... 174s Setting up libmpc3:s390x (1.3.1-1build1) ... 174s Setting up libatomic1:s390x (14.1.0-1ubuntu1) ... 174s Setting up libubsan1:s390x (14.1.0-1ubuntu1) ... 174s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 174s Setting up libasan8:s390x (14.1.0-1ubuntu1) ... 174s Setting up libisl23:s390x (0.26-3build1) ... 174s Setting up libssw0:s390x (1.1-14build1) ... 174s Setting up libcc1-0:s390x (14.1.0-1ubuntu1) ... 174s Setting up libitm1:s390x (14.1.0-1ubuntu1) ... 174s Setting up libssw-dev:s390x (1.1-14build1) ... 174s Setting up cpp-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 174s Setting up libgcc-13-dev:s390x (13.2.0-23ubuntu4) ... 174s Setting up libstdc++-13-dev:s390x (13.2.0-23ubuntu4) ... 174s Setting up cpp-13 (13.2.0-23ubuntu4) ... 174s Setting up cpp-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Setting up gcc-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 174s Setting up gcc-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Setting up g++-13-s390x-linux-gnu (13.2.0-23ubuntu4) ... 174s Setting up gcc-13 (13.2.0-23ubuntu4) ... 174s Setting up cpp (4:13.2.0-7ubuntu1) ... 174s Setting up g++-13 (13.2.0-23ubuntu4) ... 174s Setting up g++-s390x-linux-gnu (4:13.2.0-7ubuntu1) ... 174s Setting up gcc (4:13.2.0-7ubuntu1) ... 174s Setting up g++ (4:13.2.0-7ubuntu1) ... 174s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 174s Setting up build-essential (12.10ubuntu1) ... 174s Setting up autopkgtest-satdep (0) ... 174s Processing triggers for man-db (2.12.1-2) ... 174s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 176s (Reading database ... 55876 files and directories currently installed.) 176s Removing autopkgtest-satdep (0) ... 177s autopkgtest [23:55:07]: test build-lib: [----------------------- 177s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 177s 177s Target: 9 CTGACCCGG-AAATC 22 177s ||||*||||*||||| 177s Query: 1 CTGAGCCGGTAAATC 15 177s 178s ===== SSW result ===== 178s Best Smith-Waterman score: 21 178s Next-best Smith-Waterman score: 8 178s Reference start: 8 178s Reference end: 21 178s Query start: 0 178s Query end: 14 178s Next-best reference end: 4 178s Number of mismatches: 2 178s Cigar: 4=1X4=1I5= 178s ====================== 178s autopkgtest [23:55:08]: test build-lib: -----------------------] 178s build-lib PASS 178s autopkgtest [23:55:08]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 179s autopkgtest [23:55:09]: test build-lib-java: preparing testbed 370s autopkgtest [23:58:20]: testbed dpkg architecture: s390x 371s autopkgtest [23:58:21]: testbed apt version: 2.9.6 371s autopkgtest [23:58:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 371s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 372s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [352 kB] 372s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 372s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.4 kB] 372s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 372s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 372s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 372s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 372s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 372s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [402 kB] 372s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 372s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1788 B] 372s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 373s Fetched 1040 kB in 1s (966 kB/s) 373s Reading package lists... 375s Reading package lists... 375s Building dependency tree... 375s Reading state information... 375s Calculating upgrade... 375s The following packages will be upgraded: 375s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 375s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 375s Need to get 9392 kB of archives. 375s After this operation, 109 kB of additional disk space will be used. 375s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 376s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 376s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 376s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 377s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 377s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 378s Preconfiguring packages ... 378s Fetched 9392 kB in 3s (3433 kB/s) 378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 378s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 378s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 379s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 379s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 379s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 379s Error: Could not restart systemd, systemd binary not working 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 379s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 379s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Setting up libc-bin (2.39-3.1ubuntu3) ... 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 379s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 379s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 379s Setting up locales (2.39-3.1ubuntu3) ... 380s Generating locales (this might take a while)... 381s en_US.UTF-8... done 381s Generation complete. 381s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 381s Setting up libc-devtools (2.39-3.1ubuntu3) ... 381s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 381s Processing triggers for man-db (2.12.1-2) ... 382s Processing triggers for systemd (256-1ubuntu1) ... 383s Reading package lists... 383s Building dependency tree... 383s Reading state information... 383s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 384s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 384s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB] 384s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 384s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 384s Get:5 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.2 MB] 387s Get:6 http://ftpmaster.internal/ubuntu oracular/main Sources [1377 kB] 388s Get:7 http://ftpmaster.internal/ubuntu oracular/multiverse Sources [301 kB] 388s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1341 kB] 388s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x c-n-f Metadata [30.9 kB] 388s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.9 MB] 391s Get:11 http://ftpmaster.internal/ubuntu oracular/multiverse s390x Packages [167 kB] 393s Fetched 38.5 MB in 9s (4309 kB/s) 394s Reading package lists... 394s Reading package lists... 394s Building dependency tree... 394s Reading state information... 394s Calculating upgrade... 394s The following packages will be upgraded: 394s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 394s inetutils-telnet libbinutils libctf-nobfd0 libctf0 libglib2.0-0t64 394s libglib2.0-data libnghttp2-14 libnss3 libsframe1 libssl3t64 openssh-client 394s openssh-server openssh-sftp-server openssl telnet 394s 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 394s Need to get 11.0 MB of archives. 394s After this operation, 274 kB of additional disk space will be used. 394s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 395s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 395s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 395s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 395s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 395s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 395s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 395s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 396s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 396s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 396s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 396s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 396s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 396s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 396s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 396s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 396s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 396s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 396s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 396s Preconfiguring packages ... 396s Fetched 11.0 MB in 2s (5779 kB/s) 396s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 396s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 396s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 396s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 397s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 397s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 397s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 397s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 397s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 397s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 397s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 397s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 397s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 397s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 397s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 397s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 397s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 397s Preparing to unpack .../06-openssl_3.2.2-1ubuntu1_s390x.deb ... 397s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 397s Preparing to unpack .../07-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 397s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 397s Preparing to unpack .../08-libnghttp2-14_1.62.1-2_s390x.deb ... 397s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 397s Preparing to unpack .../09-telnet_0.17+2.5-5ubuntu1_all.deb ... 397s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 397s Preparing to unpack .../10-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../11-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../12-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../13-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../14-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../15-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../16-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 397s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 397s Preparing to unpack .../17-libnss3_2%3a3.102-1_s390x.deb ... 397s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 397s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 397s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 397s Setting up libnghttp2-14:s390x (1.62.1-2) ... 397s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 397s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 397s Setting up libnss3:s390x (2:3.102-1) ... 397s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 397s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 397s No schema files found: doing nothing. 397s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 397s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 397s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 397s Setting up openssl (3.2.2-1ubuntu1) ... 397s Installing new version of config file /etc/ssl/openssl.cnf ... 397s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 397s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 397s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 397s Setting up telnet (0.17+2.5-5ubuntu1) ... 397s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 397s Installing new version of config file /etc/pam.d/sshd ... 398s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 398s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 398s Processing triggers for ufw (0.36.2-6) ... 398s Processing triggers for man-db (2.12.1-2) ... 399s Reading package lists... 399s Building dependency tree... 399s Reading state information... 400s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 400s autopkgtest [23:58:50]: rebooting testbed after setup commands that affected boot 404s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 432s Reading package lists... 432s Building dependency tree... 432s Reading state information... 432s Starting pkgProblemResolver with broken count: 0 433s Starting 2 pkgProblemResolver with broken count: 0 433s Done 433s The following additional packages will be installed: 433s ca-certificates-java default-jdk-headless default-jre-headless java-common 433s liblcms2-2 libpcsclite1 libssw-java openjdk-21-jdk-headless 433s openjdk-21-jre-headless 433s Suggested packages: 433s default-jre liblcms2-utils pcscd openjdk-21-demo openjdk-21-source 433s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 433s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 433s Recommended packages: 433s libcups2t64 libharfbuzz0b libasound2t64 433s The following NEW packages will be installed: 433s autopkgtest-satdep ca-certificates-java default-jdk-headless 433s default-jre-headless java-common liblcms2-2 libpcsclite1 libssw-java 433s openjdk-21-jdk-headless openjdk-21-jre-headless 433s 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 433s Need to get 123 MB/123 MB of archives. 433s After this operation, 281 MB of additional disk space will be used. 433s Get:1 /tmp/autopkgtest.VnDt4w/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B] 433s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x ca-certificates-java all 20240118 [11.6 kB] 433s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x java-common all 0.75+exp1 [6798 B] 433s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x liblcms2-2 s390x 2.14-2build1 [172 kB] 433s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x libpcsclite1 s390x 2.2.3-1 [23.8 kB] 433s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x openjdk-21-jre-headless s390x 21.0.4~6ea-1ubuntu1 [43.9 MB] 436s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x default-jre-headless s390x 2:1.21-75+exp1 [3094 B] 436s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openjdk-21-jdk-headless s390x 21.0.4~6ea-1ubuntu1 [78.5 MB] 438s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x default-jdk-headless s390x 2:1.21-75+exp1 [962 B] 438s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x libssw-java s390x 1.1-14build1 [22.4 kB] 438s Fetched 123 MB in 5s (24.0 MB/s) 438s Selecting previously unselected package ca-certificates-java. 438s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 438s Preparing to unpack .../0-ca-certificates-java_20240118_all.deb ... 438s Unpacking ca-certificates-java (20240118) ... 438s Selecting previously unselected package java-common. 438s Preparing to unpack .../1-java-common_0.75+exp1_all.deb ... 438s Unpacking java-common (0.75+exp1) ... 438s Selecting previously unselected package liblcms2-2:s390x. 438s Preparing to unpack .../2-liblcms2-2_2.14-2build1_s390x.deb ... 438s Unpacking liblcms2-2:s390x (2.14-2build1) ... 438s Selecting previously unselected package libpcsclite1:s390x. 438s Preparing to unpack .../3-libpcsclite1_2.2.3-1_s390x.deb ... 438s Unpacking libpcsclite1:s390x (2.2.3-1) ... 438s Selecting previously unselected package openjdk-21-jre-headless:s390x. 438s Preparing to unpack .../4-openjdk-21-jre-headless_21.0.4~6ea-1ubuntu1_s390x.deb ... 438s Unpacking openjdk-21-jre-headless:s390x (21.0.4~6ea-1ubuntu1) ... 440s Selecting previously unselected package default-jre-headless. 440s Preparing to unpack .../5-default-jre-headless_2%3a1.21-75+exp1_s390x.deb ... 440s Unpacking default-jre-headless (2:1.21-75+exp1) ... 440s Selecting previously unselected package openjdk-21-jdk-headless:s390x. 440s Preparing to unpack .../6-openjdk-21-jdk-headless_21.0.4~6ea-1ubuntu1_s390x.deb ... 440s Unpacking openjdk-21-jdk-headless:s390x (21.0.4~6ea-1ubuntu1) ... 440s Selecting previously unselected package default-jdk-headless. 440s Preparing to unpack .../7-default-jdk-headless_2%3a1.21-75+exp1_s390x.deb ... 440s Unpacking default-jdk-headless (2:1.21-75+exp1) ... 440s Selecting previously unselected package libssw-java. 440s Preparing to unpack .../8-libssw-java_1.1-14build1_s390x.deb ... 440s Unpacking libssw-java (1.1-14build1) ... 440s Selecting previously unselected package autopkgtest-satdep. 440s Preparing to unpack .../9-2-autopkgtest-satdep.deb ... 440s Unpacking autopkgtest-satdep (0) ... 440s Setting up liblcms2-2:s390x (2.14-2build1) ... 440s Setting up java-common (0.75+exp1) ... 440s Setting up libssw-java (1.1-14build1) ... 440s Setting up libpcsclite1:s390x (2.2.3-1) ... 440s Setting up ca-certificates-java (20240118) ... 440s No JRE found. Skipping Java certificates setup. 440s Setting up openjdk-21-jre-headless:s390x (21.0.4~6ea-1ubuntu1) ... 440s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode 440s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 440s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 440s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 440s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 440s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 440s Processing triggers for man-db (2.12.1-2) ... 441s Processing triggers for ca-certificates-java (20240118) ... 442s Adding debian:ACCVRAIZ1.pem 442s Adding debian:AC_RAIZ_FNMT-RCM.pem 442s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 442s Adding debian:ANF_Secure_Server_Root_CA.pem 442s Adding debian:Actalis_Authentication_Root_CA.pem 442s Adding debian:AffirmTrust_Commercial.pem 442s Adding debian:AffirmTrust_Networking.pem 442s Adding debian:AffirmTrust_Premium.pem 442s Adding debian:AffirmTrust_Premium_ECC.pem 442s Adding debian:Amazon_Root_CA_1.pem 442s Adding debian:Amazon_Root_CA_2.pem 442s Adding debian:Amazon_Root_CA_3.pem 442s Adding debian:Amazon_Root_CA_4.pem 442s Adding debian:Atos_TrustedRoot_2011.pem 442s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 442s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 442s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 442s Adding debian:BJCA_Global_Root_CA1.pem 442s Adding debian:BJCA_Global_Root_CA2.pem 442s Adding debian:Baltimore_CyberTrust_Root.pem 442s Adding debian:Buypass_Class_2_Root_CA.pem 442s Adding debian:Buypass_Class_3_Root_CA.pem 442s Adding debian:CA_Disig_Root_R2.pem 442s Adding debian:CFCA_EV_ROOT.pem 442s Adding debian:COMODO_Certification_Authority.pem 442s Adding debian:COMODO_ECC_Certification_Authority.pem 442s Adding debian:COMODO_RSA_Certification_Authority.pem 442s Adding debian:Certainly_Root_E1.pem 442s Adding debian:Certainly_Root_R1.pem 442s Adding debian:Certigna.pem 442s Adding debian:Certigna_Root_CA.pem 442s Adding debian:Certum_EC-384_CA.pem 442s Adding debian:Certum_Trusted_Network_CA.pem 442s Adding debian:Certum_Trusted_Network_CA_2.pem 442s Adding debian:Certum_Trusted_Root_CA.pem 442s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 442s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 442s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 442s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 442s Adding debian:Comodo_AAA_Services_root.pem 442s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 442s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 442s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 442s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 442s Adding debian:DigiCert_Assured_ID_Root_CA.pem 442s Adding debian:DigiCert_Assured_ID_Root_G2.pem 442s Adding debian:DigiCert_Assured_ID_Root_G3.pem 442s Adding debian:DigiCert_Global_Root_CA.pem 442s Adding debian:DigiCert_Global_Root_G2.pem 442s Adding debian:DigiCert_Global_Root_G3.pem 442s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 442s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 442s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 442s Adding debian:DigiCert_Trusted_Root_G4.pem 442s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 442s Adding debian:Entrust_Root_Certification_Authority.pem 442s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 442s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 442s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 442s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 442s Adding debian:GLOBALTRUST_2020.pem 442s Adding debian:GTS_Root_R1.pem 442s Adding debian:GTS_Root_R2.pem 442s Adding debian:GTS_Root_R3.pem 442s Adding debian:GTS_Root_R4.pem 442s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 442s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 442s Adding debian:GlobalSign_Root_CA.pem 442s Adding debian:GlobalSign_Root_CA_-_R3.pem 442s Adding debian:GlobalSign_Root_CA_-_R6.pem 442s Adding debian:GlobalSign_Root_E46.pem 442s Adding debian:GlobalSign_Root_R46.pem 442s Adding debian:Go_Daddy_Class_2_CA.pem 442s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 442s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 442s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 442s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 442s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 442s Adding debian:HiPKI_Root_CA_-_G1.pem 442s Adding debian:Hongkong_Post_Root_CA_3.pem 442s Adding debian:ISRG_Root_X1.pem 442s Adding debian:ISRG_Root_X2.pem 442s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 442s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 442s Adding debian:Izenpe.com.pem 442s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 442s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 442s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 442s Adding debian:NAVER_Global_Root_Certification_Authority.pem 442s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 442s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 442s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 442s Adding debian:QuoVadis_Root_CA_1_G3.pem 442s Adding debian:QuoVadis_Root_CA_2.pem 442s Adding debian:QuoVadis_Root_CA_2_G3.pem 442s Adding debian:QuoVadis_Root_CA_3.pem 442s Adding debian:QuoVadis_Root_CA_3_G3.pem 442s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 442s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 442s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 442s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 442s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 442s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 442s Adding debian:SZAFIR_ROOT_CA2.pem 442s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 442s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 442s Adding debian:SecureSign_RootCA11.pem 442s Adding debian:SecureTrust_CA.pem 442s Adding debian:Secure_Global_CA.pem 442s Adding debian:Security_Communication_ECC_RootCA1.pem 442s Adding debian:Security_Communication_RootCA2.pem 442s Adding debian:Security_Communication_RootCA3.pem 442s Adding debian:Security_Communication_Root_CA.pem 442s Adding debian:Starfield_Class_2_CA.pem 442s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 442s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 442s Adding debian:SwissSign_Gold_CA_-_G2.pem 442s Adding debian:SwissSign_Silver_CA_-_G2.pem 442s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 442s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 442s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 442s Adding debian:TWCA_Global_Root_CA.pem 442s Adding debian:TWCA_Root_Certification_Authority.pem 442s Adding debian:TeliaSonera_Root_CA_v1.pem 442s Adding debian:Telia_Root_CA_v2.pem 442s Adding debian:TrustAsia_Global_Root_CA_G3.pem 442s Adding debian:TrustAsia_Global_Root_CA_G4.pem 442s Adding debian:Trustwave_Global_Certification_Authority.pem 442s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 442s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 442s Adding debian:TunTrust_Root_CA.pem 442s Adding debian:UCA_Extended_Validation_Root.pem 442s Adding debian:UCA_Global_G2_Root.pem 442s Adding debian:USERTrust_ECC_Certification_Authority.pem 442s Adding debian:USERTrust_RSA_Certification_Authority.pem 442s Adding debian:XRamp_Global_CA_Root.pem 442s Adding debian:certSIGN_ROOT_CA.pem 442s Adding debian:certSIGN_Root_CA_G2.pem 442s Adding debian:e-Szigno_Root_CA_2017.pem 442s Adding debian:ePKI_Root_Certification_Authority.pem 442s Adding debian:emSign_ECC_Root_CA_-_C3.pem 442s Adding debian:emSign_ECC_Root_CA_-_G3.pem 442s Adding debian:emSign_Root_CA_-_C1.pem 442s Adding debian:emSign_Root_CA_-_G1.pem 442s Adding debian:vTrus_ECC_Root_CA.pem 442s Adding debian:vTrus_Root_CA.pem 442s done. 442s Setting up openjdk-21-jdk-headless:s390x (21.0.4~6ea-1ubuntu1) ... 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jar to provide /usr/bin/jar (jar) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/javac to provide /usr/bin/javac (javac) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/javap to provide /usr/bin/javap (javap) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jps to provide /usr/bin/jps (jps) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 442s update-alternatives: using /usr/lib/jvm/java-21-openjdk-s390x/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 442s Setting up default-jre-headless (2:1.21-75+exp1) ... 442s Setting up default-jdk-headless (2:1.21-75+exp1) ... 442s Setting up autopkgtest-satdep (0) ... 444s (Reading database ... 55193 files and directories currently installed.) 444s Removing autopkgtest-satdep (0) ... 467s autopkgtest [23:59:57]: test build-lib-java: [----------------------- 469s Aligning nucleotides 469s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 469s autopkgtest [23:59:59]: test build-lib-java: -----------------------] 469s autopkgtest [23:59:59]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 469s build-lib-java PASS 470s autopkgtest [00:00:00]: test run-example: preparing testbed 721s autopkgtest [00:04:11]: testbed dpkg architecture: s390x 721s autopkgtest [00:04:11]: testbed apt version: 2.9.6 721s autopkgtest [00:04:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 722s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 722s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.4 kB] 722s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [352 kB] 722s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 722s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 722s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 722s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 722s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 722s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 722s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [402 kB] 722s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 722s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1788 B] 722s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 722s Fetched 1040 kB in 1s (1385 kB/s) 722s Reading package lists... 725s Reading package lists... 725s Building dependency tree... 725s Reading state information... 725s Calculating upgrade... 725s The following packages will be upgraded: 725s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 725s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 725s Need to get 9392 kB of archives. 725s After this operation, 109 kB of additional disk space will be used. 725s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 726s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 726s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 726s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 726s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 726s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 726s Preconfiguring packages ... 727s Fetched 9392 kB in 1s (9907 kB/s) 727s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 727s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 727s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 727s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 727s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 727s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 727s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 727s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 727s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 727s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 727s Error: Could not restart systemd, systemd binary not working 727s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 727s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 727s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 727s Setting up libc-bin (2.39-3.1ubuntu3) ... 727s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 727s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 727s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 728s Setting up locales (2.39-3.1ubuntu3) ... 728s Generating locales (this might take a while)... 729s en_US.UTF-8... done 729s Generation complete. 729s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 729s Setting up libc-devtools (2.39-3.1ubuntu3) ... 729s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 730s Processing triggers for man-db (2.12.1-2) ... 730s Processing triggers for systemd (256-1ubuntu1) ... 731s Reading package lists... 731s Building dependency tree... 731s Reading state information... 731s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 732s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 732s Get:2 http://ftpmaster.internal/ubuntu oracular InRelease [121 kB] 732s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 732s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 732s Get:5 http://ftpmaster.internal/ubuntu oracular/multiverse Sources [301 kB] 732s Get:6 http://ftpmaster.internal/ubuntu oracular/main Sources [1377 kB] 733s Get:7 http://ftpmaster.internal/ubuntu oracular/universe Sources [20.2 MB] 733s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x Packages [1341 kB] 733s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x c-n-f Metadata [30.9 kB] 733s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x Packages [14.9 MB] 734s Get:11 http://ftpmaster.internal/ubuntu oracular/multiverse s390x Packages [167 kB] 738s Fetched 38.5 MB in 6s (6785 kB/s) 738s Reading package lists... 738s Reading package lists... 738s Building dependency tree... 738s Reading state information... 739s Calculating upgrade... 739s The following packages will be upgraded: 739s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 739s inetutils-telnet libbinutils libctf-nobfd0 libctf0 libglib2.0-0t64 739s libglib2.0-data libnghttp2-14 libnss3 libsframe1 libssl3t64 openssh-client 739s openssh-server openssh-sftp-server openssl telnet 739s 19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 739s Need to get 11.0 MB of archives. 739s After this operation, 274 kB of additional disk space will be used. 739s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 740s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 740s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 741s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 741s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 741s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 741s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 741s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 742s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 742s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 742s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 742s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 742s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 742s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 742s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 742s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 742s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 742s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 742s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 743s Preconfiguring packages ... 743s Fetched 11.0 MB in 4s (3046 kB/s) 743s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 743s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 743s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 743s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 743s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 743s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 743s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 743s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 743s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 743s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 743s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 743s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 743s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 743s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 743s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 743s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 743s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 743s Preparing to unpack .../06-openssl_3.2.2-1ubuntu1_s390x.deb ... 743s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 743s Preparing to unpack .../07-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 743s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 743s Preparing to unpack .../08-libnghttp2-14_1.62.1-2_s390x.deb ... 743s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 743s Preparing to unpack .../09-telnet_0.17+2.5-5ubuntu1_all.deb ... 743s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 743s Preparing to unpack .../10-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../11-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../12-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../13-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../14-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../15-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../16-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 743s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 743s Preparing to unpack .../17-libnss3_2%3a3.102-1_s390x.deb ... 743s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 743s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 743s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 743s Setting up libnghttp2-14:s390x (1.62.1-2) ... 743s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 743s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 743s Setting up libnss3:s390x (2:3.102-1) ... 743s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 743s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 743s No schema files found: doing nothing. 743s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 743s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 743s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 743s Setting up openssl (3.2.2-1ubuntu1) ... 743s Installing new version of config file /etc/ssl/openssl.cnf ... 744s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 744s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 744s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 744s Setting up telnet (0.17+2.5-5ubuntu1) ... 744s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 744s Installing new version of config file /etc/pam.d/sshd ... 745s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 745s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 745s Processing triggers for ufw (0.36.2-6) ... 745s Processing triggers for man-db (2.12.1-2) ... 745s Reading package lists... 746s Building dependency tree... 746s Reading state information... 746s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 746s autopkgtest [00:04:36]: rebooting testbed after setup commands that affected boot 750s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 779s Reading package lists... 779s Building dependency tree... 779s Reading state information... 779s Starting pkgProblemResolver with broken count: 0 779s Starting 2 pkgProblemResolver with broken count: 0 779s Done 780s The following additional packages will be installed: 780s libssw0 ssw-align 780s The following NEW packages will be installed: 780s autopkgtest-satdep libssw0 ssw-align 780s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 780s Need to get 53.0 kB/53.7 kB of archives. 780s After this operation, 133 kB of additional disk space will be used. 780s Get:1 /tmp/autopkgtest.VnDt4w/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 780s Get:2 http://ftpmaster.internal/ubuntu oracular/universe s390x libssw0 s390x 1.1-14build1 [25.9 kB] 780s Get:3 http://ftpmaster.internal/ubuntu oracular/universe s390x ssw-align s390x 1.1-14build1 [27.2 kB] 780s Fetched 53.0 kB in 0s (181 kB/s) 780s Selecting previously unselected package libssw0:s390x. 780s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 780s Preparing to unpack .../libssw0_1.1-14build1_s390x.deb ... 780s Unpacking libssw0:s390x (1.1-14build1) ... 780s Selecting previously unselected package ssw-align. 780s Preparing to unpack .../ssw-align_1.1-14build1_s390x.deb ... 780s Unpacking ssw-align (1.1-14build1) ... 780s Selecting previously unselected package autopkgtest-satdep. 780s Preparing to unpack .../3-autopkgtest-satdep.deb ... 780s Unpacking autopkgtest-satdep (0) ... 780s Setting up libssw0:s390x (1.1-14build1) ... 780s Setting up ssw-align (1.1-14build1) ... 780s Setting up autopkgtest-satdep (0) ... 780s Processing triggers for man-db (2.12.1-2) ... 781s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 783s (Reading database ... 54732 files and directories currently installed.) 783s Removing autopkgtest-satdep (0) ... 796s autopkgtest [00:05:26]: test run-example: [----------------------- 796s target_name: chr1 796s query_name: chr1 796s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 796s 796s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 796s 796s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 796s 796s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 796s 796s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 796s 796s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 796s 796s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 796s 796s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 796s 796s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 796s 796s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 796s 796s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 796s 796s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 796s 796s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 796s 796s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 796s 796s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 796s 796s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 796s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 796s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 796s 1114s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1114s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1114s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1114s 1114s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1114s ||||||||||||||||||||||||||||||||||||||||| 1114s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1114s 1114s target_name: chr2 1114s query_name: chr1 1114s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 1114s 1114s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 1114s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 1114s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 1114s 1114s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 1114s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 1114s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 1114s 1114s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 1114s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 1114s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 1114s 1114s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 1114s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 1114s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 1114s 1114s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 1114s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 1114s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 1114s 1114s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 1114s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 1114s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 1114s 1114s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 1114s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 1114s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 1114s 1114s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 1114s | *||*||||||| ||**| | |||||||| |*||| ||| 1114s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 1114s 1114s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 1114s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 1114s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 1114s 1114s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 1114s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 1114s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 1114s 1114s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 1114s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 1114s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 1114s 1114s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 1114s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 1114s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 1114s 1114s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 1114s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 1114s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 1114s 1114s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 1146s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 1146s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 1146s 1146s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 1146s || || || |||| || || || |||*|||| |||| |*|| || ||| || 1146s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 1146s 1146s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 1146s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 1146s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 1146s 1146s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 1146s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 1146s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 1146s 1146s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 1146s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 1146s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 1146s 1146s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 1146s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 1146s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 1146s 1146s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 1146s *||||| |*|||*||||| 1146s Query: 955 --TACTTC-TAATTTTTCAC 971 1146s 1146s target_name: chr3 1146s query_name: chr1 1146s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 1146s 1146s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 1146s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 1146s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 1146s 1146s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 1146s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 1146s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 1146s 1146s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 1146s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 1146s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 1146s 1146s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 1146s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 1146s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 1146s 1146s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 1146s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 1146s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 1146s 1146s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 1146s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 1146s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 1146s 1146s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 1146s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 1146s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 1146s 1146s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 1146s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 1146s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 1146s 1146s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 1146s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 1149s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 1149s 1149s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 1149s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 1149s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 1149s 1149s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 1149s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 1149s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 1149s 1149s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 1149s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 1149s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 1149s 1149s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 1149s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 1149s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 1149s 1149s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 1149s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 1149s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 1149s 1149s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 1149s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 1149s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 1149s 1149s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 1149s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 1149s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 1149s 1149s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 1149s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 1149s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 1149s 1149s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 1149s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 1149s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 1149s 1149s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 1149s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 1149s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 1149s 1149s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 1149s *|||| |*|||||*||| || |*|||*||*|| 1149s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 1149s 1149s target_name: chr4 1149s query_name: chr1 1149s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 1149s 1149s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 1149s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 1149s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 1149s 1149s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 1149s ||| || |||***||| |||| |||| |||| || ||| || 1149s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 1149s 1149s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 1149s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 1149s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 1149s 1149s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 1149s || |||| ||||||| || |*|||||*||||*|*|| 1149s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 1149s 1149s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 1149s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 1149s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 1149s 1149s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 1149s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 1149s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 1149s 1149s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 1149s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 1149s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 1149s 1149s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 1149s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 1149s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 1149s 1149s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 1149s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 1149s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 1149s 1149s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 1149s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 1149s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 1149s 1149s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 1149s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 1149s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 1149s 1149s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 1149s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 1149s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 1149s 1149s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 1149s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 1149s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 1149s 1149s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 1149s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 1149s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 1149s 1149s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 1149s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 1149s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 1149s 1149s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 1149s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 1149s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 1149s 1149s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 1149s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 1149s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 1149s 1149s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 1149s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 1149s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 1149s 1149s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 1149s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 1149s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 1149s 1149s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 1149s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 1149s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 1149s 1149s Target: 48049 GAA---AT--AAAGTA 48059 1149s ||| || ||| || 1149s Query: 987 GAATGGATCCAAA-TA 1001 1149s 1149s target_name: chr5 1149s query_name: chr1 1149s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 1149s 1149s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 1149s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 1149s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 1149s 1149s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 1149s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 1149s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1149s 1149s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 1149s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 1149s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 1149s 1149s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 1149s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 1149s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 1149s 1149s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 1149s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 1149s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 1149s 1149s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 1149s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 1149s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 1149s 1149s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 1149s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 1149s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 1149s 1149s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 1149s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 1149s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 1149s 1149s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 1149s | |||||| ||||*|| | || | ||| |*||*||| || 1149s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 1149s 1149s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 1149s |||****| |||| |*|*|***|||*| ||*|*| ||| || 1149s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 1149s 1149s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 1149s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 1149s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 1149s 1149s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 1149s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 1149s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 1149s 1149s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 1149s | | || |||| ||||| |*|| |||| ||||*||| |||| || 1149s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 1149s 1149s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 1149s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 1149s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 1149s 1149s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 1149s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 1149s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 1149s 1149s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 1149s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 1149s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 1149s 1149s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 1149s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 1149s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 1149s 1149s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 1149s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 1149s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 1149s 1149s Target: 9707 TGTTGATTGTTTC-CTTT 9723 1149s |**|*||| |||| |||| 1149s Query: 958 TTCTAATT-TTTCACTTT 974 1149s 1149s CPU time: 353.247223 seconds 1150s target_name: chr1 1150s query_name: chr1 1150s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 1150s 1150s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 1150s 1150s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1150s 1150s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 1150s 1150s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 1150s 1150s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 1150s 1150s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 1150s 1150s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 1150s 1150s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 1150s 1150s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 1150s 1150s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 1150s 1150s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 1150s 1150s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 1150s 1150s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 1150s 1150s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 1150s 1150s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 1150s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1150s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 1150s 1468s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1468s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1468s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1468s 1468s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1468s ||||||||||||||||||||||||||||||||||||||||| 1468s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1468s 1468s target_name: chr2 1468s query_name: chr1 1468s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 1468s 1468s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 1468s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 1468s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 1468s 1468s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 1468s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 1468s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 1468s 1468s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 1468s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 1468s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 1468s 1468s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 1468s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 1468s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 1468s 1468s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 1468s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 1468s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 1468s 1468s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 1468s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 1468s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 1468s 1468s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 1468s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 1468s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 1468s 1468s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 1468s | *||*||||||| ||**| | |||||||| |*||| ||| 1468s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 1468s 1468s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 1468s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 1468s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 1468s 1468s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 1468s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 1468s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 1468s 1468s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 1468s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 1468s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 1468s 1468s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 1468s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 1468s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 1468s 1468s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 1468s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 1468s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 1468s 1468s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 1500s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 1500s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 1500s 1500s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 1500s || || || |||| || || || |||*|||| |||| |*|| || ||| || 1500s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 1500s 1500s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 1500s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 1500s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 1500s 1500s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 1500s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 1500s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 1500s 1500s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 1500s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 1500s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 1500s 1500s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 1500s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 1500s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 1500s 1500s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 1500s *||||| |*|||*||||| 1500s Query: 955 --TACTTC-TAATTTTTCAC 971 1500s 1500s target_name: chr3 1500s query_name: chr1 1500s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 1500s 1500s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 1500s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 1500s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 1500s 1500s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 1500s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 1500s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 1500s 1500s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 1500s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 1500s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 1500s 1500s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 1500s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 1500s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 1500s 1500s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 1500s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 1500s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 1500s 1500s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 1500s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 1500s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 1500s 1500s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 1500s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 1500s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 1500s 1500s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 1500s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 1500s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 1500s 1500s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 1500s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 1503s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 1503s 1503s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 1503s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 1503s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 1503s 1503s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 1503s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 1503s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 1503s 1503s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 1503s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 1503s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 1503s 1503s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 1503s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 1503s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 1503s 1503s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 1503s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 1503s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 1503s 1503s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 1503s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 1503s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 1503s 1503s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 1503s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 1503s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 1503s 1503s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 1503s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 1503s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 1503s 1503s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 1503s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 1503s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 1503s 1503s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 1503s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 1503s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 1503s 1503s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 1503s *|||| |*|||||*||| || |*|||*||*|| 1503s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 1503s 1503s target_name: chr4 1503s query_name: chr1 1503s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 1503s 1503s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 1503s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 1503s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 1503s 1503s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 1503s ||| || |||***||| |||| |||| |||| || ||| || 1503s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 1503s 1503s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 1503s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 1503s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 1503s 1503s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 1503s || |||| ||||||| || |*|||||*||||*|*|| 1503s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 1503s 1503s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 1503s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 1503s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 1503s 1503s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 1503s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 1503s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 1503s 1503s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 1503s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 1503s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 1503s 1503s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 1503s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 1503s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 1503s 1503s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 1503s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 1503s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 1503s 1503s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 1503s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 1503s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 1503s 1503s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 1503s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 1503s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 1503s 1503s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 1503s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 1503s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 1503s 1503s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 1503s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 1503s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 1503s 1503s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 1503s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 1503s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 1503s 1503s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 1503s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 1503s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 1503s 1503s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 1503s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 1503s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 1503s 1503s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 1503s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 1503s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 1503s 1503s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 1503s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 1503s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 1503s 1503s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 1503s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 1503s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 1503s 1503s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 1503s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 1504s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 1504s 1504s Target: 48049 GAA---AT--AAAGTA 48059 1504s ||| || ||| || 1504s Query: 987 GAATGGATCCAAA-TA 1001 1504s 1504s target_name: chr5 1504s query_name: chr1 1504s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 1504s 1504s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 1504s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 1504s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 1504s 1504s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 1504s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 1504s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1504s 1504s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 1504s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 1504s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 1504s 1504s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 1504s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 1504s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 1504s 1504s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 1504s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 1504s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 1504s 1504s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 1504s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 1504s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 1504s 1504s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 1504s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 1504s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 1504s 1504s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 1504s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 1504s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 1504s 1504s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 1504s | |||||| ||||*|| | || | ||| |*||*||| || 1504s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 1504s 1504s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 1504s |||****| |||| |*|*|***|||*| ||*|*| ||| || 1504s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 1504s 1504s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 1504s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 1504s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 1504s 1504s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 1504s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 1504s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 1504s 1504s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 1504s | | || |||| ||||| |*|| |||| ||||*||| |||| || 1504s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 1504s 1504s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 1504s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 1504s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 1504s 1504s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 1504s ||**|| |||*||||*||*|*| | *|||||**|*||*| CPU time: 354.005493 seconds 1504s || ||*|*||||*|| 1504s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 1504s 1504s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 1504s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 1504s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 1504s 1504s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 1504s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 1504s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 1504s 1504s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 1504s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 1504s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 1504s 1504s Target: 9707 TGTTGATTGTTTC-CTTT 9723 1504s |**|*||| |||| |||| 1504s Query: 958 TTCTAATT-TTTCACTTT 974 1504s 1504s autopkgtest [00:17:14]: test run-example: -----------------------] 1504s run-example PASS 1504s autopkgtest [00:17:14]: test run-example: - - - - - - - - - - results - - - - - - - - - - 1505s autopkgtest [00:17:15]: @@@@@@@@@@@@@@@@@@@@ summary 1505s build-lib PASS 1505s build-lib-java PASS 1505s run-example PASS 1518s nova [W] Using flock in scalingstack-bos01-s390x 1518s Creating nova instance adt-oracular-s390x-libssw-20240712-235210-juju-7f2275-prod-proposed-migration-environment-2-c64c3cf1-9b99-4a15-8496-abc509b1d21d from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)... 1518s nova [W] Using flock in scalingstack-bos01-s390x 1518s Creating nova instance adt-oracular-s390x-libssw-20240712-235210-juju-7f2275-prod-proposed-migration-environment-2-c64c3cf1-9b99-4a15-8496-abc509b1d21d from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)... 1518s nova [W] Using flock in scalingstack-bos01-s390x 1518s Creating nova instance adt-oracular-s390x-libssw-20240712-235210-juju-7f2275-prod-proposed-migration-environment-2-c64c3cf1-9b99-4a15-8496-abc509b1d21d from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)...