0s autopkgtest [00:29:10]: starting date and time: 2024-07-13 00:29:10+0000 0s autopkgtest [00:29:10]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [00:29:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.a9hnhog8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade lucy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-14.secgroup --name adt-oracular-s390x-lucy-20240713-002910-juju-7f2275-prod-proposed-migration-environment-2-ea927e1d-0ef6-4558-bff2-9cef5d2dcc43 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 82s autopkgtest [00:30:32]: testbed dpkg architecture: s390x 82s autopkgtest [00:30:32]: testbed apt version: 2.9.6 82s autopkgtest [00:30:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 84s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 84s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB] 84s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 84s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 84s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [47.1 kB] 84s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 84s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2112 B] 84s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 84s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 84s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [397 kB] 85s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8372 B] 85s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 85s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 85s Fetched 1026 kB in 1s (943 kB/s) 85s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 88s The following packages will be upgraded: 88s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 88s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 88s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data 88s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 88s openssh-server openssh-sftp-server openssl telnet 89s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 89s Need to get 20.4 MB of archives. 89s After this operation, 383 kB of additional disk space will be used. 89s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 89s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 90s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 90s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 90s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 90s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 91s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 91s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 91s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 91s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 91s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 91s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 91s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 92s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 92s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 92s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 92s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 92s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 92s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 92s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 92s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 92s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 92s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 92s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 92s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 93s Preconfiguring packages ... 93s Fetched 20.4 MB in 4s (5231 kB/s) 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 93s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 93s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 93s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 93s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 93s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 93s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 93s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 93s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 93s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 93s Error: Could not restart systemd, systemd binary not working 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 93s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 93s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 93s Setting up libc-bin (2.39-3.1ubuntu3) ... 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 93s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 93s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 93s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 94s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 94s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 94s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 94s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 94s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 94s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 94s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 94s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 94s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 94s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 94s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 94s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 94s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 94s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 94s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_s390x.deb ... 94s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 94s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 94s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 94s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_s390x.deb ... 94s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 94s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 94s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 94s Preparing to unpack .../11-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../12-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../13-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../14-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../15-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../16-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../17-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 94s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 94s Preparing to unpack .../18-libnss3_2%3a3.102-1_s390x.deb ... 94s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 94s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 94s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 94s Setting up libnghttp2-14:s390x (1.62.1-2) ... 94s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 94s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 94s Setting up libnss3:s390x (2:3.102-1) ... 94s Setting up locales (2.39-3.1ubuntu3) ... 95s Generating locales (this might take a while)... 96s en_US.UTF-8... done 96s Generation complete. 96s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 96s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 96s No schema files found: doing nothing. 96s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 96s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 96s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 96s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 96s Setting up openssl (3.2.2-1ubuntu1) ... 96s Installing new version of config file /etc/ssl/openssl.cnf ... 96s Setting up libc-devtools (2.39-3.1ubuntu3) ... 96s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 96s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 96s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 96s Setting up telnet (0.17+2.5-5ubuntu1) ... 96s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 96s Installing new version of config file /etc/pam.d/sshd ... 98s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 98s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 98s Processing triggers for ufw (0.36.2-6) ... 98s Processing triggers for systemd (256-1ubuntu1) ... 98s Processing triggers for man-db (2.12.1-2) ... 99s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 100s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 100s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 102s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Calculating upgrade... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [00:30:53]: rebooting testbed after setup commands that affected boot 107s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 135s autopkgtest [00:31:25]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 138s autopkgtest [00:31:28]: @@@@@@@@@@@@@@@@@@@@ apt-source lucy 140s Get:1 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (dsc) [1275 B] 140s Get:2 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (tar) [1458 kB] 140s Get:3 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (diff) [4632 B] 140s gpgv: Signature made Sun Mar 24 16:55:05 2024 UTC 140s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 140s gpgv: Can't check signature: No public key 140s dpkg-source: warning: cannot verify inline signature for ./lucy_1.20-4.dsc: no acceptable signature found 140s autopkgtest [00:31:30]: testing package lucy version 1.20-4 140s autopkgtest [00:31:30]: build not needed 141s autopkgtest [00:31:31]: test run-unit-test: preparing testbed 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s The following additional packages will be installed: 143s lucy 143s The following NEW packages will be installed: 143s autopkgtest-satdep lucy 143s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 944 kB/945 kB of archives. 143s After this operation, 6238 kB of additional disk space will be used. 143s Get:1 /tmp/autopkgtest.yFcHeQ/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 143s Get:2 http://ftpmaster.internal/ubuntu oracular/universe s390x lucy s390x 1.20-4 [944 kB] 143s Fetched 944 kB in 1s (1690 kB/s) 143s Selecting previously unselected package lucy. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 144s Preparing to unpack .../archives/lucy_1.20-4_s390x.deb ... 144s Unpacking lucy (1.20-4) ... 144s Selecting previously unselected package autopkgtest-satdep. 144s Preparing to unpack .../1-autopkgtest-satdep.deb ... 144s Unpacking autopkgtest-satdep (0) ... 144s Setting up lucy (1.20-4) ... 144s Setting up autopkgtest-satdep (0) ... 144s Processing triggers for man-db (2.12.1-2) ... 146s (Reading database ... 54741 files and directories currently installed.) 146s Removing autopkgtest-satdep (0) ... 147s autopkgtest [00:31:37]: test run-unit-test: [----------------------- 147s Test - 1 147s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 147s with help from Granger, Anna, John and Terry Shea. 147s lucy: Warning! No vector file given; vector removal will not be done! 147s lucy: Warning! No splice file given; splice site will not be trimmed! 147s Phase 1: Checking the number of input sequences... 147s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 147s Phase 2: Reading sequence name, length and position data... 147s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 147s Phase 3: Reading quality values and checking good sequence regions... 147s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 147s Phase 4: Comparing to 2nd sequence file... 147s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 147s lucy: >ATIEE17TF 147s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 147s lucy: >ATIEO35TF 147s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 147s 73 low quality sequences salvaged. 147s Phase 7: Producing output sequence and quality files... 147s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1392 good sequences written in test1.seq and test1.qul. 147s ---------------Passed!---------------------------- 147s Test - 2 147s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 147s with help from Granger, Anna, John and Terry Shea. 147s lucy: Warning! No vector file given; vector removal will not be done! 147s lucy: Warning! No splice file given; splice site will not be trimmed! 147s Phase 1: Checking the number of input sequences... 147s 1 input sequences found. 147s Phase 2: Reading sequence name, length and position data... 147s 0 0 empty sequences discarded. 147s Phase 3: Reading quality values and checking good sequence regions... 147s 0 1 quality sequences read; 0 low quality sequences dropped. 147s Phase 4: 2nd sequences comparison skipped... 147s no 2nd sequence file provided. 147s Phase 7: Producing output sequence and quality files... 147s 0 1 good sequences written in test2.seq and test2.qul. 147s ---------------Passed!---------------------------- 147s Test - 3 147s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 147s with help from Granger, Anna, John and Terry Shea. 147s Phase 1: Checking the number of input sequences... 147s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 147s Phase 2: Reading sequence name, length and position data... 147s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 147s Phase 3: Reading quality values and checking good sequence regions... 147s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 147s Phase 4: Comparing to 2nd sequence file... 147s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 147s lucy: >ATIEE17TF 148s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 148s lucy: >ATIEO35TF 148s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 148s 73 low quality sequences salvaged. 148s Phase 5: Locating splice sites...Number of splice sequences: 4 154s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 short or no insert sequences discarded. 154s Phase 6: Kicking out vector sequences... 154s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 vector sequences discarded. 154s Phase 7: Producing output sequence and quality files... 154s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1390 good sequences written in test3.seq and test3.qul. 154s 1582 sequence cleavage information written in lucy.info. 154s ---------------Passed!---------------------------- 155s autopkgtest [00:31:45]: test run-unit-test: -----------------------] 155s autopkgtest [00:31:45]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 155s run-unit-test PASS 155s autopkgtest [00:31:45]: @@@@@@@@@@@@@@@@@@@@ summary 155s run-unit-test PASS 169s nova [W] Using flock in scalingstack-bos01-s390x 169s Creating nova instance adt-oracular-s390x-lucy-20240713-002910-juju-7f2275-prod-proposed-migration-environment-2-ea927e1d-0ef6-4558-bff2-9cef5d2dcc43 from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)...