0s autopkgtest [17:00:13]: starting date and time: 2024-07-08 17:00:13+0000 0s autopkgtest [17:00:13]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [17:00:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3hjewcea/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpi-defaults --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpi-defaults/1.17 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-7.secgroup --name adt-oracular-s390x-lammps-20240708-170013-juju-7f2275-prod-proposed-migration-environment-2-ddcd1b58-45d8-4405-a643-1a3a6a5edaf1 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 91s autopkgtest [17:01:44]: testbed dpkg architecture: s390x 91s autopkgtest [17:01:44]: testbed apt version: 2.9.6 91s autopkgtest [17:01:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 92s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 93s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 93s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 93s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3336 B] 93s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 93s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 93s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2548 B] 93s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 93s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 93s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [363 kB] 93s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8624 B] 93s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 93s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 93s Fetched 1015 kB in 1s (1321 kB/s) 93s Reading package lists... 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Calculating upgrade... 97s The following packages will be upgraded: 97s libnetplan1 netplan-generator netplan.io python3-netplan 97s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 276 kB of archives. 97s After this operation, 1024 B of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x netplan-generator s390x 1.0.1-1ubuntu2 [59.5 kB] 97s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x python3-netplan s390x 1.0.1-1ubuntu2 [23.0 kB] 97s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x netplan.io s390x 1.0.1-1ubuntu2 [66.2 kB] 97s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libnetplan1 s390x 1.0.1-1ubuntu2 [127 kB] 98s Fetched 276 kB in 0s (633 kB/s) 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54702 files and directories currently installed.) 98s Preparing to unpack .../netplan-generator_1.0.1-1ubuntu2_s390x.deb ... 98s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 98s Unpacking netplan-generator (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 98s Preparing to unpack .../python3-netplan_1.0.1-1ubuntu2_s390x.deb ... 98s Unpacking python3-netplan (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 98s Preparing to unpack .../netplan.io_1.0.1-1ubuntu2_s390x.deb ... 98s Unpacking netplan.io (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 98s Preparing to unpack .../libnetplan1_1.0.1-1ubuntu2_s390x.deb ... 98s Unpacking libnetplan1:s390x (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 98s Setting up libnetplan1:s390x (1.0.1-1ubuntu2) ... 98s Setting up python3-netplan (1.0.1-1ubuntu2) ... 98s Setting up netplan-generator (1.0.1-1ubuntu2) ... 98s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 98s Setting up netplan.io (1.0.1-1ubuntu2) ... 98s Processing triggers for libc-bin (2.39-0ubuntu9) ... 98s Processing triggers for man-db (2.12.1-2) ... 98s Processing triggers for dbus (1.14.10-4ubuntu4) ... 98s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 99s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 99s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 99s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 100s Reading package lists... 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s Calculating upgrade... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s autopkgtest [17:01:57]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 105s autopkgtest [17:01:58]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 125s Get:1 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build4 (dsc) [3249 B] 125s Get:2 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build4 (tar) [153 MB] 125s Get:3 http://ftpmaster.internal/ubuntu oracular/universe lammps 20240207+dfsg-1.1build4 (diff) [17.1 kB] 125s gpgv: Signature made Sat Jun 8 08:51:20 2024 UTC 125s gpgv: using RSA key 92978A6E195E4921825F7FF0F34F09744E9F5DD9 125s gpgv: Can't check signature: No public key 125s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build4.dsc: no acceptable signature found 138s autopkgtest [17:02:31]: testing package lammps version 20240207+dfsg-1.1build4 139s autopkgtest [17:02:32]: build not needed 883s autopkgtest [17:14:56]: test crack: preparing testbed 884s Reading package lists... 884s Building dependency tree... 884s Reading state information... 884s Starting pkgProblemResolver with broken count: 0 884s Starting 2 pkgProblemResolver with broken count: 0 884s Done 884s The following additional packages will be installed: 884s cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 libasan8 884s libatomic1 libblas3 libcairo2 libcc1-0 libdouble-conversion3 libdrm-amdgpu1 884s libdrm-nouveau2 libdrm-radeon1 libevent-pthreads-2.1-7t64 libfabric1 884s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 884s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 884s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins 884s libhwloc15 libisl23 libitm1 libjsoncpp25 libkim-api2 liblammps0t64 884s liblapack3 libllvm17t64 libmpc3 libmunge2 libnetcdf19t64 libogg0 libopengl0 884s libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d 884s libproj25 libpython3.12t64 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 884s libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 libubsan1 libvoro++1 libvtk9.3 884s libvulkan1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 884s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 884s libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 884s libxss1 libxxf86vm1 mpi-default-bin ocl-icd-libopencl1 openmpi-bin 884s openmpi-common proj-data x11-common 884s Suggested packages: 884s gcc-12-locales cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib 884s gfortran-12-doc libcoarrays-dev openkim-models libfftw3-bin libfftw3-dev 884s glew-utils proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples opencl-icd gfortran 884s | fortran-compiler 884s Recommended packages: 884s lammps-doc libgl1-amber-dri mesa-vulkan-drivers | vulkan-icd 884s The following NEW packages will be installed: 884s autopkgtest-satdep cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data 884s libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 884s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 884s libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 libgcc-12-dev 884s libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 884s libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 884s libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-plugins libhwloc15 libisl23 884s libitm1 libjsoncpp25 libkim-api2 liblammps0t64 liblapack3 libllvm17t64 884s libmpc3 libmunge2 libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 884s libpciaccess0 libpixman-1-0 libpmix2t64 libpnetcdf0d libproj25 884s libpython3.12t64 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 884s libtcl8.6 libtheora0 libtk8.6 libubsan1 libvoro++1 libvtk9.3 libvulkan1 884s libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 884s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 884s libxfixes3 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 884s mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 884s x11-common 884s 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. 884s Need to get 151 MB/151 MB of archives. 884s After this operation, 647 MB of additional disk space will be used. 884s Get:1 /tmp/autopkgtest.pSx1TK/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 885s Get:2 http://ftpmaster.internal/ubuntu oracular/universe s390x gcc-12-base s390x 12.4.0-1ubuntu1 [46.3 kB] 885s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libisl23 s390x 0.26-3build1 [713 kB] 885s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB] 885s Get:5 http://ftpmaster.internal/ubuntu oracular/universe s390x cpp-12 s390x 12.4.0-1ubuntu1 [8155 kB] 888s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libcc1-0 s390x 14.1.0-1ubuntu1 [50.7 kB] 888s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 888s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libitm1 s390x 14.1.0-1ubuntu1 [31.1 kB] 888s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libatomic1 s390x 14.1.0-1ubuntu1 [9378 B] 888s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libasan8 s390x 14.1.0-1ubuntu1 [3003 kB] 888s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libubsan1 s390x 14.1.0-1ubuntu1 [1189 kB] 888s Get:12 http://ftpmaster.internal/ubuntu oracular/universe s390x libgcc-12-dev s390x 12.4.0-1ubuntu1 [850 kB] 888s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x gcc-12 s390x 12.4.0-1ubuntu1 [16.2 MB] 889s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 889s Get:15 http://ftpmaster.internal/ubuntu oracular/universe s390x libgfortran-12-dev s390x 12.4.0-1ubuntu1 [515 kB] 889s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x gfortran-12 s390x 12.4.0-1ubuntu1 [8566 kB] 890s Get:17 http://ftpmaster.internal/ubuntu oracular/universe s390x lammps-data all 20240207+dfsg-1.1build4 [9698 kB] 890s Get:18 http://ftpmaster.internal/ubuntu oracular/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 890s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 890s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x libpixman-1-0 s390x 0.42.2-1build1 [206 kB] 890s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 890s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 890s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 890s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libcairo2 s390x 1.18.0-3build1 [589 kB] 890s Get:25 http://ftpmaster.internal/ubuntu oracular/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB] 890s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-amdgpu1 s390x 2.4.121-2 [21.3 kB] 890s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-nouveau2 s390x 2.4.121-2 [18.1 kB] 890s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-radeon1 s390x 2.4.121-2 [22.2 kB] 890s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 890s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x librdmacm1t64 s390x 52.0-2 [73.1 kB] 890s Get:31 http://ftpmaster.internal/ubuntu oracular/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB] 890s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu3 [512 kB] 890s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x libvulkan1 s390x 1.3.283.0-1 [156 kB] 890s Get:34 http://ftpmaster.internal/ubuntu oracular/main s390x libglapi-mesa s390x 24.0.9-0ubuntu2 [65.9 kB] 890s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x libllvm17t64 s390x 1:17.0.6-12 [31.0 MB] 891s Get:36 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 891s Get:37 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1-mesa-dri s390x 24.0.9-0ubuntu2 [7077 kB] 891s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 891s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x libx11-xcb1 s390x 2:1.8.7-1build1 [7826 B] 891s Get:40 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B] 891s Get:41 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 891s Get:42 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 891s Get:43 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 891s Get:44 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 891s Get:45 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 891s Get:46 http://ftpmaster.internal/ubuntu oracular/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 891s Get:47 http://ftpmaster.internal/ubuntu oracular/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 891s Get:48 http://ftpmaster.internal/ubuntu oracular/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 891s Get:49 http://ftpmaster.internal/ubuntu oracular/main s390x libglx-mesa0 s390x 24.0.9-0ubuntu2 [174 kB] 891s Get:50 http://ftpmaster.internal/ubuntu oracular/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 891s Get:51 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 891s Get:52 http://ftpmaster.internal/ubuntu oracular/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 892s Get:53 http://ftpmaster.internal/ubuntu oracular/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 892s Get:54 http://ftpmaster.internal/ubuntu oracular/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 892s Get:55 http://ftpmaster.internal/ubuntu oracular/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-3.1ubuntu4 [1436 kB] 892s Get:56 http://ftpmaster.internal/ubuntu oracular/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-3.1ubuntu4 [58.0 kB] 892s Get:57 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc15 s390x 2.10.0-1build1 [177 kB] 892s Get:58 http://ftpmaster.internal/ubuntu oracular/main s390x libjsoncpp25 s390x 1.9.5-6build1 [82.5 kB] 892s Get:59 http://ftpmaster.internal/ubuntu oracular/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 892s Get:60 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 892s Get:61 http://ftpmaster.internal/ubuntu oracular/universe s390x libnetcdf19t64 s390x 1:4.9.2-6 [498 kB] 892s Get:62 http://ftpmaster.internal/ubuntu oracular/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB] 892s Get:63 http://ftpmaster.internal/ubuntu oracular/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 892s Get:64 http://ftpmaster.internal/ubuntu oracular/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 892s Get:65 http://ftpmaster.internal/ubuntu oracular/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 892s Get:66 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc-plugins s390x 2.10.0-1build1 [16.3 kB] 892s Get:67 http://ftpmaster.internal/ubuntu oracular/universe s390x libpmix2t64 s390x 5.0.1-4.1build1 [728 kB] 892s Get:68 http://ftpmaster.internal/ubuntu oracular/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu2 [2437 kB] 892s Get:69 http://ftpmaster.internal/ubuntu oracular/universe s390x libpnetcdf0d s390x 1.13.0-1 [1004 kB] 892s Get:70 http://ftpmaster.internal/ubuntu oracular/main s390x libpython3.12t64 s390x 3.12.4-1ubuntu1 [2476 kB] 892s Get:71 http://ftpmaster.internal/ubuntu oracular/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 892s Get:72 http://ftpmaster.internal/ubuntu oracular/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 892s Get:73 http://ftpmaster.internal/ubuntu oracular/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 892s Get:74 http://ftpmaster.internal/ubuntu oracular/universe s390x proj-data all 9.4.1-1 [7892 kB] 892s Get:75 http://ftpmaster.internal/ubuntu oracular/universe s390x libproj25 s390x 9.4.1-1 [1398 kB] 892s Get:76 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 892s Get:77 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 892s Get:78 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 892s Get:79 http://ftpmaster.internal/ubuntu oracular/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 892s Get:80 http://ftpmaster.internal/ubuntu oracular/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1build3 [271 kB] 892s Get:81 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 892s Get:82 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 892s Get:83 http://ftpmaster.internal/ubuntu oracular/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 892s Get:84 http://ftpmaster.internal/ubuntu oracular/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 892s Get:85 http://ftpmaster.internal/ubuntu oracular/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-1 [27.1 MB] 893s Get:86 http://ftpmaster.internal/ubuntu oracular/universe s390x liblammps0t64 s390x 20240207+dfsg-1.1build4 [7871 kB] 893s Get:87 http://ftpmaster.internal/ubuntu oracular/universe s390x openmpi-common all 4.1.6-7ubuntu2 [170 kB] 893s Get:88 http://ftpmaster.internal/ubuntu oracular/universe s390x openmpi-bin s390x 4.1.6-7ubuntu2 [84.5 kB] 893s Get:89 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x mpi-default-bin s390x 1.17 [2296 B] 893s Get:90 http://ftpmaster.internal/ubuntu oracular/universe s390x lammps s390x 20240207+dfsg-1.1build4 [15.2 kB] 894s Fetched 151 MB in 9s (16.9 MB/s) 894s Selecting previously unselected package gcc-12-base:s390x. 894s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54702 files and directories currently installed.) 894s Preparing to unpack .../00-gcc-12-base_12.4.0-1ubuntu1_s390x.deb ... 894s Unpacking gcc-12-base:s390x (12.4.0-1ubuntu1) ... 894s Selecting previously unselected package libisl23:s390x. 894s Preparing to unpack .../01-libisl23_0.26-3build1_s390x.deb ... 894s Unpacking libisl23:s390x (0.26-3build1) ... 894s Selecting previously unselected package libmpc3:s390x. 894s Preparing to unpack .../02-libmpc3_1.3.1-1build1_s390x.deb ... 894s Unpacking libmpc3:s390x (1.3.1-1build1) ... 894s Selecting previously unselected package cpp-12. 894s Preparing to unpack .../03-cpp-12_12.4.0-1ubuntu1_s390x.deb ... 894s Unpacking cpp-12 (12.4.0-1ubuntu1) ... 894s Selecting previously unselected package libcc1-0:s390x. 894s Preparing to unpack .../04-libcc1-0_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libcc1-0:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libgomp1:s390x. 894s Preparing to unpack .../05-libgomp1_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libitm1:s390x. 894s Preparing to unpack .../06-libitm1_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libitm1:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libatomic1:s390x. 894s Preparing to unpack .../07-libatomic1_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libatomic1:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libasan8:s390x. 894s Preparing to unpack .../08-libasan8_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libasan8:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libubsan1:s390x. 894s Preparing to unpack .../09-libubsan1_14.1.0-1ubuntu1_s390x.deb ... 894s Unpacking libubsan1:s390x (14.1.0-1ubuntu1) ... 894s Selecting previously unselected package libgcc-12-dev:s390x. 894s Preparing to unpack .../10-libgcc-12-dev_12.4.0-1ubuntu1_s390x.deb ... 894s Unpacking libgcc-12-dev:s390x (12.4.0-1ubuntu1) ... 894s Selecting previously unselected package gcc-12. 894s Preparing to unpack .../11-gcc-12_12.4.0-1ubuntu1_s390x.deb ... 894s Unpacking gcc-12 (12.4.0-1ubuntu1) ... 895s Selecting previously unselected package libgfortran5:s390x. 895s Preparing to unpack .../12-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 895s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 895s Selecting previously unselected package libgfortran-12-dev:s390x. 895s Preparing to unpack .../13-libgfortran-12-dev_12.4.0-1ubuntu1_s390x.deb ... 895s Unpacking libgfortran-12-dev:s390x (12.4.0-1ubuntu1) ... 895s Selecting previously unselected package gfortran-12. 895s Preparing to unpack .../14-gfortran-12_12.4.0-1ubuntu1_s390x.deb ... 895s Unpacking gfortran-12 (12.4.0-1ubuntu1) ... 895s Selecting previously unselected package lammps-data. 895s Preparing to unpack .../15-lammps-data_20240207+dfsg-1.1build4_all.deb ... 895s Unpacking lammps-data (20240207+dfsg-1.1build4) ... 895s Selecting previously unselected package libaec0:s390x. 895s Preparing to unpack .../16-libaec0_1.1.3-1_s390x.deb ... 895s Unpacking libaec0:s390x (1.1.3-1) ... 895s Selecting previously unselected package libblas3:s390x. 895s Preparing to unpack .../17-libblas3_3.12.0-3build1_s390x.deb ... 895s Unpacking libblas3:s390x (3.12.0-3build1) ... 895s Selecting previously unselected package libpixman-1-0:s390x. 895s Preparing to unpack .../18-libpixman-1-0_0.42.2-1build1_s390x.deb ... 895s Unpacking libpixman-1-0:s390x (0.42.2-1build1) ... 895s Selecting previously unselected package libxcb-render0:s390x. 895s Preparing to unpack .../19-libxcb-render0_1.17.0-2_s390x.deb ... 895s Unpacking libxcb-render0:s390x (1.17.0-2) ... 895s Selecting previously unselected package libxcb-shm0:s390x. 895s Preparing to unpack .../20-libxcb-shm0_1.17.0-2_s390x.deb ... 895s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 895s Selecting previously unselected package libxrender1:s390x. 895s Preparing to unpack .../21-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 895s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 895s Selecting previously unselected package libcairo2:s390x. 895s Preparing to unpack .../22-libcairo2_1.18.0-3build1_s390x.deb ... 895s Unpacking libcairo2:s390x (1.18.0-3build1) ... 895s Selecting previously unselected package libdouble-conversion3:s390x. 895s Preparing to unpack .../23-libdouble-conversion3_3.3.0-1build1_s390x.deb ... 895s Unpacking libdouble-conversion3:s390x (3.3.0-1build1) ... 895s Selecting previously unselected package libdrm-amdgpu1:s390x. 895s Preparing to unpack .../24-libdrm-amdgpu1_2.4.121-2_s390x.deb ... 895s Unpacking libdrm-amdgpu1:s390x (2.4.121-2) ... 895s Selecting previously unselected package libdrm-nouveau2:s390x. 895s Preparing to unpack .../25-libdrm-nouveau2_2.4.121-2_s390x.deb ... 895s Unpacking libdrm-nouveau2:s390x (2.4.121-2) ... 895s Selecting previously unselected package libdrm-radeon1:s390x. 895s Preparing to unpack .../26-libdrm-radeon1_2.4.121-2_s390x.deb ... 895s Unpacking libdrm-radeon1:s390x (2.4.121-2) ... 895s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 895s Preparing to unpack .../27-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 895s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 895s Selecting previously unselected package librdmacm1t64:s390x. 895s Preparing to unpack .../28-librdmacm1t64_52.0-2_s390x.deb ... 895s Unpacking librdmacm1t64:s390x (52.0-2) ... 895s Selecting previously unselected package libfabric1:s390x. 895s Preparing to unpack .../29-libfabric1_1.17.0-3build2_s390x.deb ... 895s Unpacking libfabric1:s390x (1.17.0-3build2) ... 895s Selecting previously unselected package libfftw3-double3:s390x. 895s Preparing to unpack .../30-libfftw3-double3_3.3.10-1ubuntu3_s390x.deb ... 895s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 895s Selecting previously unselected package libvulkan1:s390x. 895s Preparing to unpack .../31-libvulkan1_1.3.283.0-1_s390x.deb ... 895s Unpacking libvulkan1:s390x (1.3.283.0-1) ... 895s Selecting previously unselected package libglapi-mesa:s390x. 895s Preparing to unpack .../32-libglapi-mesa_24.0.9-0ubuntu2_s390x.deb ... 895s Unpacking libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 895s Selecting previously unselected package libllvm17t64:s390x. 895s Preparing to unpack .../33-libllvm17t64_1%3a17.0.6-12_s390x.deb ... 895s Unpacking libllvm17t64:s390x (1:17.0.6-12) ... 896s Selecting previously unselected package libxcb-dri3-0:s390x. 896s Preparing to unpack .../34-libxcb-dri3-0_1.17.0-2_s390x.deb ... 896s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 896s Selecting previously unselected package libgl1-mesa-dri:s390x. 896s Preparing to unpack .../35-libgl1-mesa-dri_24.0.9-0ubuntu2_s390x.deb ... 896s Unpacking libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 897s Selecting previously unselected package libglvnd0:s390x. 897s Preparing to unpack .../36-libglvnd0_1.7.0-1build1_s390x.deb ... 897s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 897s Selecting previously unselected package libx11-xcb1:s390x. 897s Preparing to unpack .../37-libx11-xcb1_2%3a1.8.7-1build1_s390x.deb ... 897s Unpacking libx11-xcb1:s390x (2:1.8.7-1build1) ... 897s Selecting previously unselected package libxcb-dri2-0:s390x. 897s Preparing to unpack .../38-libxcb-dri2-0_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-dri2-0:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxcb-glx0:s390x. 897s Preparing to unpack .../39-libxcb-glx0_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxcb-present0:s390x. 897s Preparing to unpack .../40-libxcb-present0_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-present0:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxcb-randr0:s390x. 897s Preparing to unpack .../41-libxcb-randr0_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-randr0:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxcb-sync1:s390x. 897s Preparing to unpack .../42-libxcb-sync1_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-sync1:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxcb-xfixes0:s390x. 897s Preparing to unpack .../43-libxcb-xfixes0_1.17.0-2_s390x.deb ... 897s Unpacking libxcb-xfixes0:s390x (1.17.0-2) ... 897s Selecting previously unselected package libxfixes3:s390x. 897s Preparing to unpack .../44-libxfixes3_1%3a6.0.0-2build1_s390x.deb ... 897s Unpacking libxfixes3:s390x (1:6.0.0-2build1) ... 897s Selecting previously unselected package libxshmfence1:s390x. 897s Preparing to unpack .../45-libxshmfence1_1.3-1build5_s390x.deb ... 897s Unpacking libxshmfence1:s390x (1.3-1build5) ... 897s Selecting previously unselected package libxxf86vm1:s390x. 897s Preparing to unpack .../46-libxxf86vm1_1%3a1.1.4-1build4_s390x.deb ... 897s Unpacking libxxf86vm1:s390x (1:1.1.4-1build4) ... 897s Selecting previously unselected package libglx-mesa0:s390x. 897s Preparing to unpack .../47-libglx-mesa0_24.0.9-0ubuntu2_s390x.deb ... 897s Unpacking libglx-mesa0:s390x (24.0.9-0ubuntu2) ... 897s Selecting previously unselected package libglx0:s390x. 897s Preparing to unpack .../48-libglx0_1.7.0-1build1_s390x.deb ... 897s Unpacking libglx0:s390x (1.7.0-1build1) ... 897s Selecting previously unselected package libgl1:s390x. 897s Preparing to unpack .../49-libgl1_1.7.0-1build1_s390x.deb ... 897s Unpacking libgl1:s390x (1.7.0-1build1) ... 897s Selecting previously unselected package libgl2ps1.4. 897s Preparing to unpack .../50-libgl2ps1.4_1.4.2+dfsg1-2build1_s390x.deb ... 897s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 897s Selecting previously unselected package libglew2.2:s390x. 897s Preparing to unpack .../51-libglew2.2_2.2.0-4build1_s390x.deb ... 897s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 897s Selecting previously unselected package libsz2:s390x. 897s Preparing to unpack .../52-libsz2_1.1.3-1_s390x.deb ... 897s Unpacking libsz2:s390x (1.1.3-1) ... 897s Selecting previously unselected package libhdf5-103-1t64:s390x. 897s Preparing to unpack .../53-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 897s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 897s Selecting previously unselected package libhdf5-hl-100t64:s390x. 897s Preparing to unpack .../54-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 897s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 897s Selecting previously unselected package libhwloc15:s390x. 897s Preparing to unpack .../55-libhwloc15_2.10.0-1build1_s390x.deb ... 897s Unpacking libhwloc15:s390x (2.10.0-1build1) ... 897s Selecting previously unselected package libjsoncpp25:s390x. 897s Preparing to unpack .../56-libjsoncpp25_1.9.5-6build1_s390x.deb ... 897s Unpacking libjsoncpp25:s390x (1.9.5-6build1) ... 897s Selecting previously unselected package libkim-api2:s390x. 897s Preparing to unpack .../57-libkim-api2_2.3.0-1_s390x.deb ... 897s Unpacking libkim-api2:s390x (2.3.0-1) ... 897s Selecting previously unselected package liblapack3:s390x. 897s Preparing to unpack .../58-liblapack3_3.12.0-3build1_s390x.deb ... 897s Unpacking liblapack3:s390x (3.12.0-3build1) ... 897s Selecting previously unselected package libnetcdf19t64:s390x. 897s Preparing to unpack .../59-libnetcdf19t64_1%3a4.9.2-6_s390x.deb ... 897s Unpacking libnetcdf19t64:s390x (1:4.9.2-6) ... 897s Selecting previously unselected package libmunge2:s390x. 897s Preparing to unpack .../60-libmunge2_0.5.15-4build1_s390x.deb ... 897s Unpacking libmunge2:s390x (0.5.15-4build1) ... 897s Selecting previously unselected package libpciaccess0:s390x. 897s Preparing to unpack .../61-libpciaccess0_0.17-3build1_s390x.deb ... 897s Unpacking libpciaccess0:s390x (0.17-3build1) ... 897s Selecting previously unselected package libxnvctrl0:s390x. 897s Preparing to unpack .../62-libxnvctrl0_510.47.03-0ubuntu4_s390x.deb ... 897s Unpacking libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 897s Selecting previously unselected package ocl-icd-libopencl1:s390x. 897s Preparing to unpack .../63-ocl-icd-libopencl1_2.3.2-1build1_s390x.deb ... 897s Unpacking ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 897s Selecting previously unselected package libhwloc-plugins:s390x. 897s Preparing to unpack .../64-libhwloc-plugins_2.10.0-1build1_s390x.deb ... 897s Unpacking libhwloc-plugins:s390x (2.10.0-1build1) ... 897s Selecting previously unselected package libpmix2t64:s390x. 897s Preparing to unpack .../65-libpmix2t64_5.0.1-4.1build1_s390x.deb ... 897s Unpacking libpmix2t64:s390x (5.0.1-4.1build1) ... 897s Selecting previously unselected package libopenmpi3t64:s390x. 897s Preparing to unpack .../66-libopenmpi3t64_4.1.6-7ubuntu2_s390x.deb ... 897s Unpacking libopenmpi3t64:s390x (4.1.6-7ubuntu2) ... 897s Selecting previously unselected package libpnetcdf0d:s390x. 897s Preparing to unpack .../67-libpnetcdf0d_1.13.0-1_s390x.deb ... 897s Unpacking libpnetcdf0d:s390x (1.13.0-1) ... 897s Selecting previously unselected package libpython3.12t64:s390x. 897s Preparing to unpack .../68-libpython3.12t64_3.12.4-1ubuntu1_s390x.deb ... 897s Unpacking libpython3.12t64:s390x (3.12.4-1ubuntu1) ... 897s Selecting previously unselected package libvoro++1. 897s Preparing to unpack .../69-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_s390x.deb ... 897s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 897s Selecting previously unselected package libogg0:s390x. 897s Preparing to unpack .../70-libogg0_1.3.5-3build1_s390x.deb ... 897s Unpacking libogg0:s390x (1.3.5-3build1) ... 898s Selecting previously unselected package libopengl0:s390x. 898s Preparing to unpack .../71-libopengl0_1.7.0-1build1_s390x.deb ... 898s Unpacking libopengl0:s390x (1.7.0-1build1) ... 898s Selecting previously unselected package proj-data. 898s Preparing to unpack .../72-proj-data_9.4.1-1_all.deb ... 898s Unpacking proj-data (9.4.1-1) ... 898s Selecting previously unselected package libproj25:s390x. 898s Preparing to unpack .../73-libproj25_9.4.1-1_s390x.deb ... 898s Unpacking libproj25:s390x (9.4.1-1) ... 898s Selecting previously unselected package libtbbmalloc2:s390x. 898s Preparing to unpack .../74-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb ... 898s Unpacking libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 898s Selecting previously unselected package libtbbbind-2-5:s390x. 898s Preparing to unpack .../75-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 898s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 898s Selecting previously unselected package libtbb12:s390x. 898s Preparing to unpack .../76-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 898s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 898s Selecting previously unselected package libtcl8.6:s390x. 898s Preparing to unpack .../77-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 898s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 898s Selecting previously unselected package libtheora0:s390x. 898s Preparing to unpack .../78-libtheora0_1.1.1+dfsg.1-16.1build3_s390x.deb ... 898s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 898s Selecting previously unselected package libxft2:s390x. 898s Preparing to unpack .../79-libxft2_2.3.6-1build1_s390x.deb ... 898s Unpacking libxft2:s390x (2.3.6-1build1) ... 898s Selecting previously unselected package x11-common. 898s Preparing to unpack .../80-x11-common_1%3a7.7+23ubuntu3_all.deb ... 898s Unpacking x11-common (1:7.7+23ubuntu3) ... 898s Selecting previously unselected package libxss1:s390x. 898s Preparing to unpack .../81-libxss1_1%3a1.2.3-1build3_s390x.deb ... 898s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 898s Selecting previously unselected package libtk8.6:s390x. 898s Preparing to unpack .../82-libtk8.6_8.6.14-1build1_s390x.deb ... 898s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 898s Selecting previously unselected package libvtk9.3:s390x. 898s Preparing to unpack .../83-libvtk9.3_9.3.0+dfsg1-1_s390x.deb ... 898s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-1) ... 899s Selecting previously unselected package liblammps0t64:s390x. 899s Preparing to unpack .../84-liblammps0t64_20240207+dfsg-1.1build4_s390x.deb ... 899s Unpacking liblammps0t64:s390x (20240207+dfsg-1.1build4) ... 899s Selecting previously unselected package openmpi-common. 899s Preparing to unpack .../85-openmpi-common_4.1.6-7ubuntu2_all.deb ... 899s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 899s Selecting previously unselected package openmpi-bin. 899s Preparing to unpack .../86-openmpi-bin_4.1.6-7ubuntu2_s390x.deb ... 899s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 899s Selecting previously unselected package mpi-default-bin. 899s Preparing to unpack .../87-mpi-default-bin_1.17_s390x.deb ... 899s Unpacking mpi-default-bin (1.17) ... 899s Selecting previously unselected package lammps. 899s Preparing to unpack .../88-lammps_20240207+dfsg-1.1build4_s390x.deb ... 899s Unpacking lammps (20240207+dfsg-1.1build4) ... 899s Selecting previously unselected package autopkgtest-satdep. 899s Preparing to unpack .../89-1-autopkgtest-satdep.deb ... 899s Unpacking autopkgtest-satdep (0) ... 899s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 899s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 899s Setting up libpixman-1-0:s390x (0.42.2-1build1) ... 899s Setting up libx11-xcb1:s390x (2:1.8.7-1build1) ... 899s Setting up libpciaccess0:s390x (0.17-3build1) ... 899s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ... 899s Setting up libdrm-nouveau2:s390x (2.4.121-2) ... 899s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 899s Setting up libogg0:s390x (1.3.5-3build1) ... 899s Setting up proj-data (9.4.1-1) ... 899s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 899s Setting up libproj25:s390x (9.4.1-1) ... 899s Setting up lammps-data (20240207+dfsg-1.1build4) ... 899s Setting up libxcb-render0:s390x (1.17.0-2) ... 899s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 899s Setting up libdrm-radeon1:s390x (2.4.121-2) ... 899s Setting up libglvnd0:s390x (1.7.0-1build1) ... 899s Setting up libxcb-glx0:s390x (1.17.0-2) ... 899s Setting up x11-common (1:7.7+23ubuntu3) ... 900s Setting up libxcb-shm0:s390x (1.17.0-2) ... 900s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ... 900s Setting up libcairo2:s390x (1.18.0-3build1) ... 900s Setting up libaec0:s390x (1.1.3-1) ... 900s Setting up libopengl0:s390x (1.7.0-1build1) ... 900s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 900s Setting up gcc-12-base:s390x (12.4.0-1ubuntu1) ... 900s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 900s Setting up libxcb-present0:s390x (1.17.0-2) ... 900s Setting up libpython3.12t64:s390x (3.12.4-1ubuntu1) ... 900s Setting up libblas3:s390x (3.12.0-3build1) ... 900s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 900s Setting up libmunge2:s390x (0.5.15-4build1) ... 900s Setting up libllvm17t64:s390x (1:17.0.6-12) ... 900s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 900s Setting up libxcb-sync1:s390x (1.17.0-2) ... 900s Setting up libhwloc15:s390x (2.10.0-1build1) ... 900s Setting up libmpc3:s390x (1.3.1-1build1) ... 900s Setting up libatomic1:s390x (14.1.0-1ubuntu1) ... 900s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 900s Setting up libjsoncpp25:s390x (1.9.5-6build1) ... 900s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 900s Setting up libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 900s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 900s Setting up libvulkan1:s390x (1.3.283.0-1) ... 900s Setting up libubsan1:s390x (14.1.0-1ubuntu1) ... 900s Setting up libxcb-dri2-0:s390x (1.17.0-2) ... 900s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 900s Setting up libxshmfence1:s390x (1.3-1build5) ... 900s Setting up libxcb-randr0:s390x (1.17.0-2) ... 900s Setting up libasan8:s390x (14.1.0-1ubuntu1) ... 900s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 900s Setting up openmpi-common (4.1.6-7ubuntu2) ... 900s Setting up librdmacm1t64:s390x (52.0-2) ... 900s Setting up libxss1:s390x (1:1.2.3-1build3) ... 900s Setting up libisl23:s390x (0.26-3build1) ... 900s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 900s Setting up libcc1-0:s390x (14.1.0-1ubuntu1) ... 900s Setting up libsz2:s390x (1.1.3-1) ... 900s Setting up libitm1:s390x (14.1.0-1ubuntu1) ... 900s Setting up libdrm-amdgpu1:s390x (2.4.121-2) ... 900s Setting up libfabric1:s390x (1.17.0-3build2) ... 900s Setting up liblapack3:s390x (3.12.0-3build1) ... 900s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 900s Setting up libxft2:s390x (2.3.6-1build1) ... 900s Setting up cpp-12 (12.4.0-1ubuntu1) ... 900s Setting up libtk8.6:s390x (8.6.14-1build1) ... 900s Setting up libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 900s Setting up libhwloc-plugins:s390x (2.10.0-1build1) ... 900s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 900s Setting up libgcc-12-dev:s390x (12.4.0-1ubuntu1) ... 900s Setting up libpmix2t64:s390x (5.0.1-4.1build1) ... 900s Setting up libopenmpi3t64:s390x (4.1.6-7ubuntu2) ... 900s Setting up libpnetcdf0d:s390x (1.13.0-1) ... 900s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 900s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 900s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 900s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 900s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 900s Setting up libnetcdf19t64:s390x (1:4.9.2-6) ... 900s Setting up libglx-mesa0:s390x (24.0.9-0ubuntu2) ... 900s Setting up libglx0:s390x (1.7.0-1build1) ... 900s Setting up mpi-default-bin (1.17) ... 900s Setting up libgfortran-12-dev:s390x (12.4.0-1ubuntu1) ... 900s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 900s Setting up libgl1:s390x (1.7.0-1build1) ... 900s Setting up gcc-12 (12.4.0-1ubuntu1) ... 900s Setting up libglew2.2:s390x (2.2.0-4build1) ... 900s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 900s Setting up gfortran-12 (12.4.0-1ubuntu1) ... 900s Setting up libvtk9.3:s390x (9.3.0+dfsg1-1) ... 900s Setting up libkim-api2:s390x (2.3.0-1) ... 900s Setting up liblammps0t64:s390x (20240207+dfsg-1.1build4) ... 900s Setting up lammps (20240207+dfsg-1.1build4) ... 900s Setting up autopkgtest-satdep (0) ... 900s Processing triggers for man-db (2.12.1-2) ... 900s Processing triggers for libc-bin (2.39-0ubuntu9) ... 903s (Reading database ... 56873 files and directories currently installed.) 903s Removing autopkgtest-satdep (0) ... 904s autopkgtest [17:15:17]: test crack: [----------------------- 904s LAMMPS (7 Feb 2024 - Update 1) 904s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 904s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 904s using 1 OpenMP thread(s) per MPI task 904s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 904s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 904s 2 by 1 by 1 MPI processor grid 904s Created 8141 atoms 904s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 904s create_atoms CPU = 0.002 seconds 904s 302 atoms in group lower 904s 302 atoms in group upper 904s 604 atoms in group boundary 904s 7537 atoms in group mobile 904s 841 atoms in group leftupper 904s 841 atoms in group leftlower 904s Setting atom values ... 904s 841 settings made for type 904s Setting atom values ... 904s 841 settings made for type 904s Setting atom values ... 904s 302 settings made for type 904s Setting atom values ... 904s 302 settings made for type 904s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 904s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 904s Neighbor list info ... 904s update: every = 1 steps, delay = 5 steps, check = yes 904s max neighbors/atom: 2000, page size: 100000 904s master list distance cutoff = 2.8 904s ghost atom cutoff = 2.8 904s binsize = 1.4, bins = 80 56 1 904s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 904s (1) pair lj/cut, perpetual 904s attributes: half, newton on 904s pair build: half/bin/atomonly/newton 904s stencil: half/bin/2d 904s bin: standard 904s Setting up Verlet run ... 904s Unit style : lj 904s Current step : 0 904s Time step : 0.003 904s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 904s Step Temp E_pair E_mol TotEng Press Volume 904s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 905s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 905s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 906s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 906s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 907s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 907s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 908s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 908s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 909s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 909s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 910s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 910s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 911s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 911s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 912s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 912s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 913s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 913s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 914s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 914s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 915s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 915s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 916s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 916s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 917s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 917s Loop time of 12.1133 on 2 procs for 5000 steps with 8141 atoms 917s 917s Performance: 106989.565 tau/day, 412.768 timesteps/s, 3.360 Matom-step/s 917s 49.0% CPU use with 2 MPI tasks x 1 OpenMP threads 917s 917s MPI task timing breakdown: 917s Section | min time | avg time | max time |%varavg| %total 917s --------------------------------------------------------------- 917s Pair | 5.4163 | 5.4896 | 5.5629 | 3.1 | 45.32 917s Neigh | 0.17738 | 0.18144 | 0.18551 | 1.0 | 1.50 917s Comm | 5.7574 | 5.9781 | 6.1989 | 9.0 | 49.35 917s Output | 0.0056178 | 0.0061511 | 0.0066845 | 0.7 | 0.05 917s Modify | 0.23621 | 0.23699 | 0.23777 | 0.2 | 1.96 917s Other | | 0.221 | | | 1.82 917s 917s Nlocal: 4070.5 ave 4085 max 4056 min 917s Histogram: 1 0 0 0 0 0 0 0 0 1 917s Nghost: 207 ave 208 max 206 min 917s Histogram: 1 0 0 0 0 0 0 0 0 1 917s Neighs: 35700 ave 35927 max 35473 min 917s Histogram: 1 0 0 0 0 0 0 0 0 1 917s 917s Total # of neighbors = 71400 917s Ave neighs/atom = 8.7704213 917s Neighbor list builds = 106 917s Dangerous builds = 0 917s Total wall time: 0:00:12 917s LAMMPS (7 Feb 2024 - Update 1) 927s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 927s using 1 OpenMP thread(s) per MPI task 927s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 927s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 927s 1 by 1 by 1 MPI processor grid 927s Created 8141 atoms 927s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 927s create_atoms CPU = 0.002 seconds 927s 302 atoms in group lower 927s 302 atoms in group upper 927s 604 atoms in group boundary 927s 7537 atoms in group mobile 927s 841 atoms in group leftupper 927s 841 atoms in group leftlower 927s Setting atom values ... 927s 841 settings made for type 927s Setting atom values ... 927s 841 settings made for type 927s Setting atom values ... 927s 302 settings made for type 927s Setting atom values ... 927s 302 settings made for type 927s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 927s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 927s Neighbor list info ... 927s update: every = 1 steps, delay = 5 steps, check = yes 927s max neighbors/atom: 2000, page size: 100000 927s master list distance cutoff = 2.8 927s ghost atom cutoff = 2.8 927s binsize = 1.4, bins = 80 56 1 927s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 927s (1) pair lj/cut, perpetual 927s attributes: half, newton on 927s pair build: half/bin/atomonly/newton 927s stencil: half/bin/2d 927s bin: standard 927s Setting up Verlet run ... 927s Unit style : lj 927s Current step : 0 927s Time step : 0.003 927s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 927s Step Temp E_pair E_mol TotEng Press Volume 927s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 927s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 927s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 927s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 927s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 927s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 927s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 927s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 927s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 927s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 927s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 927s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 927s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 927s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 927s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 927s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 927s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 927s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 927s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 927s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 927s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 927s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 927s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 928s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 928s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 928s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 928s Loop time of 11.7338 on 1 procs for 5000 steps with 8141 atoms 928s 928s Performance: 110450.368 tau/day, 426.120 timesteps/s, 3.469 Matom-step/s 928s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 928s 928s MPI task timing breakdown: 928s Section | min time | avg time | max time |%varavg| %total 928s --------------------------------------------------------------- 928s Pair | 10.822 | 10.822 | 10.822 | 0.0 | 92.23 928s Neigh | 0.32732 | 0.32732 | 0.32732 | 0.0 | 2.79 928s Comm | 0.003532 | 0.003532 | 0.003532 | 0.0 | 0.03 928s Output | 0.0014226 | 0.0014226 | 0.0014226 | 0.0 | 0.01 928s Modify | 0.45582 | 0.45582 | 0.45582 | 0.0 | 3.88 928s Other | | 0.1232 | | | 1.05 928s 928s Nlocal: 8141 ave 8141 max 8141 min 928s Histogram: 1 0 0 0 0 0 0 0 0 0 928s Nghost: 0 ave 0 max 0 min 928s Histogram: 1 0 0 0 0 0 0 0 0 0 928s Neighs: 71389 ave 71389 max 71389 min 928s Histogram: 1 0 0 0 0 0 0 0 0 0 928s 928s Total # of neighbors = 71389 928s Ave neighs/atom = 8.7690701 928s Neighbor list builds = 100 928s Dangerous builds = 0 928s Total wall time: 0:00:11 928s run: OK 929s autopkgtest [17:15:42]: test crack: -----------------------] 929s crack PASS 929s autopkgtest [17:15:42]: test crack: - - - - - - - - - - results - - - - - - - - - - 930s autopkgtest [17:15:43]: test dipole: preparing testbed 931s Reading package lists... 931s Building dependency tree... 931s Reading state information... 931s Starting pkgProblemResolver with broken count: 0 931s Starting 2 pkgProblemResolver with broken count: 0 931s Done 931s The following NEW packages will be installed: 931s autopkgtest-satdep 931s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 931s Need to get 0 B/704 B of archives. 931s After this operation, 0 B of additional disk space will be used. 931s Get:1 /tmp/autopkgtest.pSx1TK/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 932s Selecting previously unselected package autopkgtest-satdep. 932s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 932s Preparing to unpack .../2-autopkgtest-satdep.deb ... 932s Unpacking autopkgtest-satdep (0) ... 932s Setting up autopkgtest-satdep (0) ... 933s (Reading database ... 56873 files and directories currently installed.) 933s Removing autopkgtest-satdep (0) ... 934s autopkgtest [17:15:47]: test dipole: [----------------------- 934s LAMMPS (7 Feb 2024 - Update 1) 934s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 934s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 934s using 1 OpenMP thread(s) per MPI task 934s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 934s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 934s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 934s 2 by 1 by 1 MPI processor grid 934s Created 200 atoms 934s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 934s create_atoms CPU = 0.001 seconds 934s Setting atom values ... 934s 200 settings made for mass 934s Setting atom values ... 934s 200 settings made for dipole/random 934s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 934s Neighbor list info ... 934s update: every = 1 steps, delay = 0 steps, check = yes 934s max neighbors/atom: 2000, page size: 100000 934s master list distance cutoff = 2.8 934s ghost atom cutoff = 2.8 934s binsize = 1.4, bins = 13 13 2 934s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 934s (1) pair lj/cut/dipole/cut, perpetual 934s attributes: half, newton on 934s pair build: half/bin/atomonly/newton 934s stencil: half/bin/2d 934s bin: standard 934s Setting up Verlet run ... 934s Unit style : lj 934s Current step : 0 934s Time step : 0.005 934s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 934s Step Temp E_pair c_erot TotEng Press 934s 0 0 -2.1717485 0 -2.1717485 -2.5549017 934s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 934s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 934s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 935s 2000 0.41682174 -2.8150621 0.23053133 -2.4003244 -0.12755967 935s 2500 0.42226151 -2.7992773 0.21201574 -2.3791271 -0.42717565 935s 3000 0.40912644 -2.7687377 0.19983693 -2.3616569 0.13572202 935s 3500 0.43061123 -2.7771436 0.18913682 -2.3486855 -0.68871101 935s 4000 0.47642054 -2.8606122 0.23261313 -2.3865738 -0.26385194 935s 4500 0.43856522 -2.8161061 0.23395024 -2.3797337 -0.2451526 935s 5000 0.42765477 -2.8393865 0.27394472 -2.41387 -0.2578236 935s 5500 0.46375408 -2.8523674 0.26128049 -2.3909321 -0.074469682 935s 6000 0.37810306 -2.7407945 0.24127395 -2.364582 -0.017656351 935s 6500 0.40670883 -2.7670792 0.23827482 -2.3624039 -0.4153209 935s 7000 0.43381285 -2.7910058 0.24717951 -2.359362 -0.32827324 935s 7500 0.41395656 -2.7720326 0.24704428 -2.3601459 -0.31058846 935s 8000 0.42896544 -2.7586695 0.21848971 -2.3318489 -0.24582158 935s 8500 0.4159837 -2.7285922 0.20349242 -2.3146884 -0.21727121 935s 9000 0.43247532 -2.7365389 0.19865458 -2.306226 -0.13110924 935s 9500 0.4876086 -2.785822 0.20388831 -2.3006515 -0.080937633 935s 10000 0.42948035 -2.7655989 0.23832814 -2.3382659 -0.2360635 935s Loop time of 1.15361 on 2 procs for 10000 steps with 200 atoms 935s 935s Performance: 3744757.419 tau/day, 8668.420 timesteps/s, 1.734 Matom-step/s 935s 43.1% CPU use with 2 MPI tasks x 1 OpenMP threads 935s 935s MPI task timing breakdown: 935s Section | min time | avg time | max time |%varavg| %total 935s --------------------------------------------------------------- 935s Pair | 0.33905 | 0.35343 | 0.36781 | 2.4 | 30.64 935s Neigh | 0.019357 | 0.019975 | 0.020593 | 0.4 | 1.73 935s Comm | 0.6523 | 0.67026 | 0.68822 | 2.2 | 58.10 935s Output | 0.00068302 | 0.001036 | 0.001389 | 1.1 | 0.09 935s Modify | 0.043223 | 0.047649 | 0.052075 | 2.0 | 4.13 935s Other | | 0.06126 | | | 5.31 935s 935s Nlocal: 100 ave 103 max 97 min 935s Histogram: 1 0 0 0 0 0 0 0 0 1 935s Nghost: 125 ave 127 max 123 min 935s Histogram: 1 0 0 0 0 0 0 0 0 1 935s Neighs: 832 ave 852 max 812 min 935s Histogram: 1 0 0 0 0 0 0 0 0 1 935s 935s Total # of neighbors = 1664 935s Ave neighs/atom = 8.32 935s Neighbor list builds = 682 935s Dangerous builds = 0 935s Total wall time: 0:00:01 936s LAMMPS (7 Feb 2024 - Update 1) 936s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 936s using 1 OpenMP thread(s) per MPI task 936s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 936s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 936s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 936s 1 by 1 by 1 MPI processor grid 936s Created 200 atoms 936s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 936s create_atoms CPU = 0.001 seconds 936s Setting atom values ... 936s 200 settings made for mass 936s Setting atom values ... 936s 200 settings made for dipole/random 936s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 936s Neighbor list info ... 936s update: every = 1 steps, delay = 0 steps, check = yes 936s max neighbors/atom: 2000, page size: 100000 936s master list distance cutoff = 2.8 936s ghost atom cutoff = 2.8 936s binsize = 1.4, bins = 13 13 2 936s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 936s (1) pair lj/cut/dipole/cut, perpetual 936s attributes: half, newton on 936s pair build: half/bin/atomonly/newton 936s stencil: half/bin/2d 936s bin: standard 936s Setting up Verlet run ... 936s Unit style : lj 936s Current step : 0 936s Time step : 0.005 936s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 936s Step Temp E_pair c_erot TotEng Press 936s 0 0 -2.1717485 0 -2.1717485 -2.5549017 936s 500 0.39555366 -2.8050759 0.22195366 -2.4115 -0.21605406 936s 1000 0.4062916 -2.8050542 0.22105842 -2.400794 -0.37250231 936s 1500 0.44946161 -2.8276171 0.20908634 -2.3804028 -0.19355614 936s 2000 0.41682156 -2.815062 0.23053141 -2.4003245 -0.12755875 936s 2500 0.42249692 -2.7995109 0.2120131 -2.3791265 -0.42816448 936s 3000 0.41616758 -2.7781108 0.20164728 -2.364024 -0.020886314 936s 3500 0.45899292 -2.845444 0.21311649 -2.388746 -0.27031162 936s 4000 0.44192149 -2.8102242 0.2031683 -2.3705124 -0.16716401 936s 4500 0.50397271 -2.8780965 0.21354686 -2.3766437 -0.13676854 936s 5000 0.43620945 -2.7993403 0.2117878 -2.3653119 0.13226909 936s 5500 0.42861319 -2.7809996 0.2051046 -2.3545294 -0.19042969 936s 6000 0.46841814 -2.816026 0.19950812 -2.34995 -0.41629929 936s 6500 0.41697733 -2.7700652 0.20994527 -2.3551728 -0.27762295 936s 7000 0.45187547 -2.7823572 0.20168068 -2.3327412 -0.36487435 936s 7500 0.45027947 -2.8258363 0.25315235 -2.3778082 -0.30198681 936s 8000 0.45478856 -2.8289685 0.2494063 -2.3764539 0.02766223 936s 8500 0.47491136 -2.844227 0.24174939 -2.3716901 -0.18129259 936s 9000 0.40849079 -2.7425167 0.22352464 -2.3360684 -0.0069144283 936s 9500 0.41803515 -2.7832433 0.26484963 -2.3672983 -0.036254325 936s 10000 0.43935862 -2.7528327 0.22318819 -2.3156709 -0.14674506 936s Loop time of 0.899367 on 1 procs for 10000 steps with 200 atoms 936s 936s Performance: 4803375.999 tau/day, 11118.926 timesteps/s, 2.224 Matom-step/s 936s 98.4% CPU use with 1 MPI tasks x 1 OpenMP threads 936s 936s MPI task timing breakdown: 936s Section | min time | avg time | max time |%varavg| %total 936s --------------------------------------------------------------- 936s Pair | 0.72037 | 0.72037 | 0.72037 | 0.0 | 80.10 936s Neigh | 0.039864 | 0.039864 | 0.039864 | 0.0 | 4.43 936s Comm | 0.034014 | 0.034014 | 0.034014 | 0.0 | 3.78 936s Output | 0.00015914 | 0.00015914 | 0.00015914 | 0.0 | 0.02 936s Modify | 0.09253 | 0.09253 | 0.09253 | 0.0 | 10.29 936s Other | | 0.01243 | | | 1.38 936s 936s Nlocal: 200 ave 200 max 200 min 937s Histogram: 1 0 0 0 0 0 0 0 0 0 937s Nghost: 146 ave 146 max 146 min 937s Histogram: 1 0 0 0 0 0 0 0 0 0 937s Neighs: 1639 ave 1639 max 1639 min 937s Histogram: 1 0 0 0 0 0 0 0 0 0 937s 937s Total # of neighbors = 1639 937s Ave neighs/atom = 8.195 937s Neighbor list builds = 687 937s Dangerous builds = 0 937s Total wall time: 0:00:00 937s run: OK 937s autopkgtest [17:15:50]: test dipole: -----------------------] 937s autopkgtest [17:15:50]: test dipole: - - - - - - - - - - results - - - - - - - - - - 937s dipole PASS 938s autopkgtest [17:15:51]: test ellipse: preparing testbed 939s Reading package lists... 939s Building dependency tree... 939s Reading state information... 940s Starting pkgProblemResolver with broken count: 0 940s Starting 2 pkgProblemResolver with broken count: 0 940s Done 940s The following NEW packages will be installed: 940s autopkgtest-satdep 940s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 940s Need to get 0 B/708 B of archives. 940s After this operation, 0 B of additional disk space will be used. 940s Get:1 /tmp/autopkgtest.pSx1TK/3-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [708 B] 940s Selecting previously unselected package autopkgtest-satdep. 940s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 940s Preparing to unpack .../3-autopkgtest-satdep.deb ... 940s Unpacking autopkgtest-satdep (0) ... 940s Setting up autopkgtest-satdep (0) ... 942s (Reading database ... 56873 files and directories currently installed.) 942s Removing autopkgtest-satdep (0) ... 942s autopkgtest [17:15:55]: test ellipse: [----------------------- 943s LAMMPS (7 Feb 2024 - Update 1) 943s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 943s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 943s using 1 OpenMP thread(s) per MPI task 943s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 943s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 943s 2 by 1 by 1 MPI processor grid 943s Created 400 atoms 943s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 943s create_atoms CPU = 0.001 seconds 943s Setting atom values ... 943s 48 settings made for type/fraction 943s Setting atom values ... 943s 352 settings made for mass 943s Setting atom values ... 943s 48 settings made for mass 943s Setting atom values ... 943s 352 settings made for shape 943s Setting atom values ... 943s 48 settings made for shape 943s Setting atom values ... 943s 400 settings made for quat/random 943s 352 atoms in group spheroid 943s 943s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 943s 943s Your simulation uses code contributions which should be cited: 943s - pair gayberne command: doi:10.1063/1.3058435 943s The log file lists these citations in BibTeX format. 943s 943s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 943s 943s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 943s Neighbor list info ... 943s update: every = 1 steps, delay = 0 steps, check = yes 943s max neighbors/atom: 2000, page size: 100000 943s master list distance cutoff = 4.8 943s ghost atom cutoff = 4.8 943s binsize = 2.4, bins = 59 59 3 943s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 943s (1) pair gayberne, perpetual 943s attributes: half, newton on 943s pair build: half/bin/atomonly/newton 943s stencil: half/bin/2d 943s bin: standard 943s Setting up Verlet run ... 943s Unit style : lj 943s Current step : 0 943s Time step : 0.002 943s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 943s Step c_rot E_pair TotEng Press Volume 943s 0 2.2638298 0 2.394 0.04788 20000 943s 100 1.7507088 0 1.8513745 0.036020794 20558.953 943s 200 2.2704785 0 2.401031 0.046552815 20630.598 943s 300 1.862122 0 1.969194 0.042610426 18485.56 943s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 943s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 943s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 943s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 943s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 943s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 943s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 943s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 943s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 943s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 943s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 944s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 944s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 944s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 944s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 944s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 944s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 944s Loop time of 1.27083 on 2 procs for 2000 steps with 400 atoms 944s 944s Performance: 271947.195 tau/day, 1573.768 timesteps/s, 629.507 katom-step/s 944s 45.9% CPU use with 2 MPI tasks x 1 OpenMP threads 944s 944s MPI task timing breakdown: 944s Section | min time | avg time | max time |%varavg| %total 944s --------------------------------------------------------------- 944s Pair | 0.40016 | 0.42017 | 0.44018 | 3.1 | 33.06 944s Neigh | 0.012732 | 0.013 | 0.013269 | 0.2 | 1.02 944s Comm | 0.54178 | 0.56192 | 0.58207 | 2.7 | 44.22 944s Output | 0.028095 | 0.028168 | 0.028241 | 0.0 | 2.22 944s Modify | 0.19648 | 0.19884 | 0.2012 | 0.5 | 15.65 944s Other | | 0.04873 | | | 3.83 944s 944s Nlocal: 200 ave 227 max 173 min 944s Histogram: 1 0 0 0 0 0 0 0 0 1 944s Nghost: 204 ave 206 max 202 min 944s Histogram: 1 0 0 0 0 0 0 0 0 1 944s Neighs: 1479.5 ave 1784 max 1175 min 944s Histogram: 1 0 0 0 0 0 0 0 0 1 944s 944s Total # of neighbors = 2959 944s Ave neighs/atom = 7.3975 944s Neighbor list builds = 348 944s Dangerous builds = 0 944s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 944s Setting up Verlet run ... 944s Unit style : lj 944s Current step : 2000 944s Time step : 0.002 944s Per MPI rank memory allocation (min/avg/max) = 6.9 | 6.9 | 6.9 Mbytes 944s Step c_rot E_pair TotEng Press Volume 944s 2000 1.9784272 -3.3396694 -1.3888911 0.80497674 1149.0282 944s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 944s 2200 1.9590367 -3.3182662 -1.3678333 0.35910433 1149.0282 944s 2300 2.0250309 -3.3891121 -1.3644964 0.46285769 1149.0282 944s 2400 2.085533 -3.4551199 -1.3401904 0.61189864 1149.0282 944s 2500 2.077574 -3.4482359 -1.3340251 1.0190852 1149.0282 944s 2600 2.0840722 -3.4558292 -1.3514352 0.7597702 1149.0282 944s 2700 2.1174248 -3.4915978 -1.3720622 0.82088405 1149.0282 945s 2800 2.0120484 -3.3803498 -1.3351386 1.0472272 1149.0282 945s 2900 2.095772 -3.4692917 -1.3762115 0.6503267 1149.0282 945s 3000 2.005185 -3.3743963 -1.3771538 0.74858505 1149.0282 945s 3100 2.0635196 -3.4375558 -1.3792354 0.72379626 1149.0282 945s 3200 2.0131468 -3.3825952 -1.3703433 1.1087307 1149.0282 945s 3300 2.0467878 -3.4185419 -1.3532024 0.7400243 1149.0282 945s 3400 1.9629403 -3.328306 -1.3871127 0.78865882 1149.0282 945s 3500 2.0576813 -3.4288036 -1.3361687 0.72305492 1149.0282 945s 3600 1.9638286 -3.3256476 -1.3663274 0.83792378 1149.0282 945s 3700 1.9900562 -3.3535764 -1.3259922 0.4389563 1149.0282 945s 3800 1.9016735 -3.2598525 -1.3493967 0.56256005 1149.0282 945s 3900 2.002131 -3.3658151 -1.3768647 0.59924524 1149.0282 946s 4000 1.9750784 -3.33731 -1.3724406 0.70702486 1149.0282 946s Loop time of 1.62423 on 2 procs for 2000 steps with 400 atoms 946s 946s Performance: 212777.833 tau/day, 1231.353 timesteps/s, 492.541 katom-step/s 946s 40.9% CPU use with 2 MPI tasks x 1 OpenMP threads 946s 946s MPI task timing breakdown: 946s Section | min time | avg time | max time |%varavg| %total 946s --------------------------------------------------------------- 946s Pair | 0.40298 | 0.53785 | 0.67271 | 18.4 | 33.11 946s Neigh | 0.0023674 | 0.0033339 | 0.0043005 | 1.7 | 0.21 946s Comm | 0.77662 | 0.92549 | 1.0744 | 15.5 | 56.98 946s Output | 0.031479 | 0.031948 | 0.032418 | 0.3 | 1.97 946s Modify | 0.05908 | 0.072568 | 0.086056 | 5.0 | 4.47 946s Other | | 0.05304 | | | 3.27 946s 946s Nlocal: 200 ave 242 max 158 min 946s Histogram: 1 0 0 0 0 0 0 0 0 1 946s Nghost: 186 ave 206 max 166 min 946s Histogram: 1 0 0 0 0 0 0 0 0 1 946s Neighs: 1548.5 ave 2045 max 1052 min 946s Histogram: 1 0 0 0 0 0 0 0 0 1 946s 946s Total # of neighbors = 3097 946s Ave neighs/atom = 7.7425 946s Neighbor list builds = 48 946s Dangerous builds = 0 946s Total wall time: 0:00:02 946s LAMMPS (7 Feb 2024 - Update 1) 947s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 947s using 1 OpenMP thread(s) per MPI task 947s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 947s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 947s 1 by 1 by 1 MPI processor grid 947s Created 400 atoms 947s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 947s create_atoms CPU = 0.000 seconds 947s Setting atom values ... 947s 48 settings made for type/fraction 947s Setting atom values ... 947s 352 settings made for mass 947s Setting atom values ... 947s 48 settings made for mass 947s Setting atom values ... 947s 352 settings made for shape 947s Setting atom values ... 947s 48 settings made for shape 947s Setting atom values ... 947s 400 settings made for quat/random 947s 352 atoms in group spheroid 947s 947s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 947s 947s Your simulation uses code contributions which should be cited: 947s - pair gayberne command: doi:10.1063/1.3058435 947s The log file lists these citations in BibTeX format. 947s 947s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 947s 947s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 947s Neighbor list info ... 947s update: every = 1 steps, delay = 0 steps, check = yes 947s max neighbors/atom: 2000, page size: 100000 947s master list distance cutoff = 4.8 947s ghost atom cutoff = 4.8 947s binsize = 2.4, bins = 59 59 3 947s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 947s (1) pair gayberne, perpetual 947s attributes: half, newton on 947s pair build: half/bin/atomonly/newton 947s stencil: half/bin/2d 947s bin: standard 947s Setting up Verlet run ... 947s Unit style : lj 947s Current step : 0 947s Time step : 0.002 947s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 947s Step c_rot E_pair TotEng Press Volume 947s 0 2.2638298 0 2.394 0.04788 20000 947s 100 1.7507088 0 1.8513745 0.036020794 20558.953 947s 200 2.2704785 0 2.401031 0.046552815 20630.598 947s 300 1.862122 0 1.969194 0.042610426 18485.56 947s 400 2.1682285 -0.00033180079 2.2925698 0.06678177 13725.929 947s 500 1.9774167 -0.036688682 2.0543497 0.094267647 8509.1191 947s 600 2.0763332 -0.16712599 1.8943547 0.22454815 4686.7174 947s 700 2.2031637 -0.65167903 1.505138 0.69461503 2513.4867 947s 800 1.9076177 -1.6161536 0.26664447 1.2006561 1456.0639 947s 900 2.1654872 -3.098663 -1.0127947 2.3547814 962.22026 947s 1000 1.5697203 -4.290219 -2.7475676 2.2081575 780.13242 947s 1100 1.8639391 -4.8401808 -2.9839514 1.6435411 731.64362 947s 1200 2.148214 -4.559462 -2.3813692 1.2926066 761.90913 947s 1300 1.756056 -4.1199781 -2.4086474 0.55480157 830.59257 947s 1400 2.2520217 -3.9967432 -1.7251673 1.0840012 891.1767 947s 1500 1.7403402 -3.6959497 -1.9315447 0.69094077 980.77988 947s 1600 2.2198668 -3.40679 -1.2069637 0.83252434 1063.6253 947s 1700 1.8937862 -3.2995933 -1.4123785 0.15689916 1142.2427 947s 1800 2.0788606 -3.2740111 -1.2135595 0.8266016 1170.2029 947s 1900 2.0093512 -3.3688564 -1.3754478 0.50483334 1173.9086 947s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 947s Loop time of 1.12894 on 1 procs for 2000 steps with 400 atoms 947s 947s Performance: 306128.718 tau/day, 1771.578 timesteps/s, 708.631 katom-step/s 947s 99.2% CPU use with 1 MPI tasks x 1 OpenMP threads 947s 947s MPI task timing breakdown: 947s Section | min time | avg time | max time |%varavg| %total 947s --------------------------------------------------------------- 947s Pair | 0.84678 | 0.84678 | 0.84678 | 0.0 | 75.01 948s Neigh | 0.025359 | 0.025359 | 0.025359 | 0.0 | 2.25 948s Comm | 0.0096459 | 0.0096459 | 0.0096459 | 0.0 | 0.85 948s Output | 0.024246 | 0.024246 | 0.024246 | 0.0 | 2.15 948s Modify | 0.21795 | 0.21795 | 0.21795 | 0.0 | 19.31 948s Other | | 0.004955 | | | 0.44 948s 948s Nlocal: 400 ave 400 max 400 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s Nghost: 255 ave 255 max 255 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s Neighs: 2959 ave 2959 max 2959 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s 948s Total # of neighbors = 2959 948s Ave neighs/atom = 7.3975 948s Neighbor list builds = 348 948s Dangerous builds = 0 948s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 948s Setting up Verlet run ... 948s Unit style : lj 948s Current step : 2000 948s Time step : 0.002 948s Per MPI rank memory allocation (min/avg/max) = 6.926 | 6.926 | 6.926 Mbytes 948s Step c_rot E_pair TotEng Press Volume 948s 2000 1.9784272 -3.3396694 -1.3888912 0.8049767 1149.0282 948s 2100 1.9413656 -3.2989879 -1.344805 1.1581912 1149.0282 948s 2200 1.9590368 -3.3182663 -1.3678333 0.35910425 1149.0282 948s 2300 2.0250308 -3.3891119 -1.3644964 0.46285779 1149.0282 948s 2400 2.0855331 -3.45512 -1.3401904 0.61189841 1149.0282 948s 2500 2.0775737 -3.4482356 -1.3340258 1.0190836 1149.0282 948s 2600 2.084072 -3.4558289 -1.3514359 0.75976918 1149.0282 948s 2700 2.1174308 -3.4916046 -1.3720664 0.82086811 1149.0282 948s 2800 2.0120441 -3.3803491 -1.3351469 1.047208 1149.0282 948s 2900 2.0957766 -3.4692999 -1.376208 0.65043335 1149.0282 948s 3000 2.00512 -3.3743288 -1.3771585 0.7487656 1149.0282 948s 3100 2.0635277 -3.4376031 -1.3792202 0.72375619 1149.0282 948s 3200 2.0130716 -3.3825107 -1.3702334 1.1098674 1149.0282 948s 3300 2.0463568 -3.4179583 -1.3534773 0.73871011 1149.0282 948s 3400 1.9649348 -3.3304023 -1.3860539 0.77548498 1149.0282 948s 3500 2.0501941 -3.4213612 -1.3373407 0.73278199 1149.0282 948s 3600 1.9881829 -3.3519947 -1.3795107 0.73402726 1149.0282 948s 3700 1.9994085 -3.3655341 -1.3599281 0.3911747 1149.0282 948s 3800 1.963869 -3.3264036 -1.3599099 0.50519594 1149.0282 948s 3900 1.9970107 -3.3624111 -1.3743885 1.0960718 1149.0282 948s 4000 2.0620245 -3.4315752 -1.3998675 0.54966642 1149.0282 948s Loop time of 1.23641 on 1 procs for 2000 steps with 400 atoms 948s 948s Performance: 279519.005 tau/day, 1617.587 timesteps/s, 647.035 katom-step/s 948s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 948s 948s MPI task timing breakdown: 948s Section | min time | avg time | max time |%varavg| %total 948s --------------------------------------------------------------- 948s Pair | 1.0551 | 1.0551 | 1.0551 | 0.0 | 85.34 948s Neigh | 0.0066383 | 0.0066383 | 0.0066383 | 0.0 | 0.54 948s Comm | 0.0095343 | 0.0095343 | 0.0095343 | 0.0 | 0.77 948s Output | 0.023749 | 0.023749 | 0.023749 | 0.0 | 1.92 948s Modify | 0.13724 | 0.13724 | 0.13724 | 0.0 | 11.10 948s Other | | 0.00412 | | | 0.33 948s 948s Nlocal: 400 ave 400 max 400 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s Nghost: 240 ave 240 max 240 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s Neighs: 3096 ave 3096 max 3096 min 948s Histogram: 1 0 0 0 0 0 0 0 0 0 948s 948s Total # of neighbors = 3096 948s Ave neighs/atom = 7.74 948s Neighbor list builds = 49 948s Dangerous builds = 0 948s Total wall time: 0:00:02 948s LAMMPS (7 Feb 2024 - Update 1) 948s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 948s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 948s using 1 OpenMP thread(s) per MPI task 948s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 948s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 948s 2 by 1 by 1 MPI processor grid 948s Created 400 atoms 948s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 948s create_atoms CPU = 0.001 seconds 948s Setting atom values ... 948s 48 settings made for type/fraction 948s Setting atom values ... 948s 352 settings made for mass 948s Setting atom values ... 948s 48 settings made for mass 948s Setting atom values ... 948s 352 settings made for shape 948s Setting atom values ... 948s 48 settings made for shape 948s Setting atom values ... 948s 400 settings made for quat/random 948s 352 atoms in group spheroid 948s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 948s Neighbor list info ... 948s update: every = 1 steps, delay = 0 steps, check = yes 948s max neighbors/atom: 2000, page size: 100000 948s master list distance cutoff = 4.8 948s ghost atom cutoff = 4.8 948s binsize = 2.4, bins = 59 59 3 948s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 948s (1) pair resquared, perpetual 948s attributes: half, newton on 948s pair build: half/bin/atomonly/newton 948s stencil: half/bin/2d 948s bin: standard 948s Setting up Verlet run ... 948s Unit style : lj 948s Current step : 0 948s Time step : 0.002 948s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 948s Step c_rot E_pair TotEng Press Volume 948s 0 2.2638298 0 2.394 0.04788 20000 948s 100 1.7507088 0 1.8513745 0.036020794 20558.953 948s 200 2.2704785 0 2.401031 0.046552815 20630.598 948s 300 1.862122 0 1.969194 0.042610426 18485.56 948s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 948s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 948s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 948s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 949s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 949s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 949s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 949s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 949s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 949s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 949s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 950s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 950s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 950s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 950s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 950s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 950s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 950s Loop time of 1.98794 on 2 procs for 2000 steps with 400 atoms 950s 950s Performance: 173848.451 tau/day, 1006.067 timesteps/s, 402.427 katom-step/s 950s 47.4% CPU use with 2 MPI tasks x 1 OpenMP threads 950s 950s MPI task timing breakdown: 950s Section | min time | avg time | max time |%varavg| %total 950s --------------------------------------------------------------- 950s Pair | 0.76986 | 0.78006 | 0.79026 | 1.2 | 39.24 950s Neigh | 0.0127 | 0.012798 | 0.012897 | 0.1 | 0.64 950s Comm | 0.90564 | 0.91566 | 0.92569 | 1.0 | 46.06 950s Output | 0.026566 | 0.02667 | 0.026775 | 0.1 | 1.34 950s Modify | 0.20305 | 0.20334 | 0.20363 | 0.1 | 10.23 950s Other | | 0.0494 | | | 2.49 950s 950s Nlocal: 200 ave 206 max 194 min 950s Histogram: 1 0 0 0 0 0 0 0 0 1 950s Nghost: 166 ave 172 max 160 min 950s Histogram: 1 0 0 0 0 0 0 0 0 1 950s Neighs: 990.5 ave 1028 max 953 min 950s Histogram: 1 0 0 0 0 0 0 0 0 1 950s 950s Total # of neighbors = 1981 950s Ave neighs/atom = 4.9525 950s Neighbor list builds = 410 950s Dangerous builds = 0 950s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 950s Setting up Verlet run ... 950s Unit style : lj 950s Current step : 2000 950s Time step : 0.002 950s Per MPI rank memory allocation (min/avg/max) = 6.89 | 6.89 | 6.89 Mbytes 950s Step c_rot E_pair TotEng Press Volume 950s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 950s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 951s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 951s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 951s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 951s 2500 2.1396456 0.25118294 2.3450649 1.7231479 1625.5704 951s 2600 2.1724989 0.21652796 2.36624 1.5785682 1625.5704 951s 2700 2.1347133 0.2565462 2.3819962 1.7939756 1625.5704 952s 2800 2.2187273 0.16767707 2.3890091 1.3803388 1625.5704 952s 2900 2.2653117 0.11841424 2.358481 1.1423479 1625.5704 952s 3000 2.1965681 0.19125616 2.3687823 1.55014 1625.5704 952s 3100 2.1970501 0.19052613 2.3694703 1.4706426 1625.5704 952s 3200 2.1661439 0.22324214 2.3939177 1.619691 1625.5704 952s 3300 2.1298288 0.26157991 2.3997036 1.8700501 1625.5704 953s 3400 2.1293647 0.26220526 2.373699 1.7332686 1625.5704 953s 3500 2.1835494 0.20483304 2.4031724 1.5471088 1625.5704 953s 3600 2.1875445 0.20049079 2.4159533 1.5995253 1625.5704 953s 3700 2.1186666 0.27351639 2.4141913 1.9057949 1625.5704 953s 3800 2.1752149 0.2136072 2.3067948 1.5705518 1625.5704 953s 3900 2.1976482 0.18993383 2.4017837 1.4844827 1625.5704 954s 4000 2.1788977 0.20960933 2.3437572 1.576965 1625.5704 954s Loop time of 3.43431 on 2 procs for 2000 steps with 400 atoms 954s 954s Performance: 100631.445 tau/day, 582.358 timesteps/s, 232.943 katom-step/s 954s 47.7% CPU use with 2 MPI tasks x 1 OpenMP threads 954s 954s MPI task timing breakdown: 954s Section | min time | avg time | max time |%varavg| %total 954s --------------------------------------------------------------- 954s Pair | 1.4825 | 1.5362 | 1.5899 | 4.3 | 44.73 954s Neigh | 0.0024909 | 0.0026234 | 0.0027558 | 0.3 | 0.08 954s Comm | 1.6937 | 1.7497 | 1.8056 | 4.2 | 50.95 954s Output | 0.027969 | 0.028322 | 0.028675 | 0.2 | 0.82 954s Modify | 0.068335 | 0.070924 | 0.073514 | 1.0 | 2.07 954s Other | | 0.04658 | | | 1.36 954s 954s Nlocal: 200 ave 207 max 193 min 954s Histogram: 1 0 0 0 0 0 0 0 0 1 954s Nghost: 162.5 ave 165 max 160 min 954s Histogram: 1 0 0 0 0 0 0 0 0 1 954s Neighs: 966 ave 1009 max 923 min 954s Histogram: 1 0 0 0 0 0 0 0 0 1 954s 954s Total # of neighbors = 1932 954s Ave neighs/atom = 4.83 954s Neighbor list builds = 50 954s Dangerous builds = 0 954s Total wall time: 0:00:05 954s LAMMPS (7 Feb 2024 - Update 1) 956s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 956s using 1 OpenMP thread(s) per MPI task 956s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 956s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 956s 1 by 1 by 1 MPI processor grid 956s Created 400 atoms 956s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 956s create_atoms CPU = 0.001 seconds 956s Setting atom values ... 956s 48 settings made for type/fraction 956s Setting atom values ... 956s 352 settings made for mass 956s Setting atom values ... 956s 48 settings made for mass 956s Setting atom values ... 956s 352 settings made for shape 956s Setting atom values ... 956s 48 settings made for shape 956s Setting atom values ... 956s 400 settings made for quat/random 956s 352 atoms in group spheroid 956s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 956s Neighbor list info ... 956s update: every = 1 steps, delay = 0 steps, check = yes 956s max neighbors/atom: 2000, page size: 100000 956s master list distance cutoff = 4.8 956s ghost atom cutoff = 4.8 956s binsize = 2.4, bins = 59 59 3 956s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 956s (1) pair resquared, perpetual 956s attributes: half, newton on 956s pair build: half/bin/atomonly/newton 956s stencil: half/bin/2d 956s bin: standard 956s Setting up Verlet run ... 956s Unit style : lj 956s Current step : 0 956s Time step : 0.002 956s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 956s Step c_rot E_pair TotEng Press Volume 956s 0 2.2638298 0 2.394 0.04788 20000 956s 100 1.7507088 0 1.8513745 0.036020794 20558.953 956s 200 2.2704785 0 2.401031 0.046552815 20630.598 956s 300 1.862122 0 1.969194 0.042610426 18485.56 956s 400 2.1681648 -1.8025253e-05 2.2928162 0.066815262 13725.945 956s 500 1.9796533 0.011266483 2.1047446 0.10930999 8512.0962 956s 600 2.0381815 0.05520958 2.0768422 0.26593572 4768.9024 956s 700 2.2849402 0.25892126 2.4973312 1.1619 2735.0739 956s 800 1.4992869 0.22469187 1.6806361 1.2886286 1869.4273 956s 900 2.0547415 0.27250933 2.2614984 1.9975339 1555.2406 956s 1000 1.6926518 0.1458468 1.8205892 1.178465 1587.0462 956s 1100 2.2566757 0.10550322 2.3422895 0.95295253 1829.1762 956s 1200 1.7863944 0.052794099 1.8022676 0.50915281 2274.7198 956s 1300 2.1812168 0.052256594 2.1840651 0.45260879 2829.8629 956s 1400 1.9144744 0.03819752 1.9088776 0.32361118 3307.992 956s 1500 2.0960168 0.05105678 2.1054249 0.35884692 3466.0213 956s 1600 2.0672237 0.058048371 2.1030277 0.39835548 3217.6206 956s 1700 1.9868599 0.15133448 2.1051513 0.73337678 2689.3862 956s 1800 2.1036353 0.19793253 2.2839145 1.1035796 2171.6175 956s 1900 1.8399343 0.15530012 2.0123427 1.0727888 1823.0596 956s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 956s Loop time of 1.91775 on 1 procs for 2000 steps with 400 atoms 956s 956s Performance: 180211.288 tau/day, 1042.889 timesteps/s, 417.156 katom-step/s 956s 97.3% CPU use with 1 MPI tasks x 1 OpenMP threads 956s 956s MPI task timing breakdown: 956s Section | min time | avg time | max time |%varavg| %total 956s --------------------------------------------------------------- 956s Pair | 1.6274 | 1.6274 | 1.6274 | 0.0 | 84.86 956s Neigh | 0.026086 | 0.026086 | 0.026086 | 0.0 | 1.36 956s Comm | 0.0084392 | 0.0084392 | 0.0084392 | 0.0 | 0.44 956s Output | 0.02562 | 0.02562 | 0.02562 | 0.0 | 1.34 956s Modify | 0.2249 | 0.2249 | 0.2249 | 0.0 | 11.73 959s Other | | 0.005309 | | | 0.28 959s 959s Nlocal: 400 ave 400 max 400 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s Nghost: 214 ave 214 max 214 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s Neighs: 1981 ave 1981 max 1981 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s 959s Total # of neighbors = 1981 959s Ave neighs/atom = 4.9525 959s Neighbor list builds = 410 959s Dangerous builds = 0 959s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 959s Setting up Verlet run ... 959s Unit style : lj 959s Current step : 2000 959s Time step : 0.002 959s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 959s Step c_rot E_pair TotEng Press Volume 959s 2000 2.1390853 0.25173897 2.4016008 1.7950213 1625.5704 959s 2100 2.2262008 0.15960391 2.3610768 1.3398437 1625.5704 959s 2200 2.1759925 0.21281154 2.4217703 1.547288 1625.5704 959s 2300 2.2426044 0.14235411 2.3796419 1.3063731 1625.5704 959s 2400 2.1909516 0.1968467 2.3277677 1.5131631 1625.5704 959s 2500 2.1396456 0.25118295 2.3450649 1.7231479 1625.5704 959s 2600 2.1724989 0.21652796 2.3662399 1.5785682 1625.5704 959s 2700 2.1347133 0.25654622 2.3819962 1.7939757 1625.5704 959s 2800 2.2187273 0.16767709 2.3890091 1.3803389 1625.5704 959s 2900 2.2653117 0.1184142 2.3584809 1.1423477 1625.5704 959s 3000 2.1965682 0.19125607 2.3687823 1.5501394 1625.5704 959s 3100 2.1970503 0.19052592 2.3694702 1.4706415 1625.5704 959s 3200 2.1661438 0.22324217 2.393918 1.619691 1625.5704 959s 3300 2.1298268 0.26158212 2.3997056 1.8700704 1625.5704 959s 3400 2.129366 0.26220387 2.3736989 1.7332623 1625.5704 959s 3500 2.1835467 0.20483593 2.4031735 1.5471227 1625.5704 959s 3600 2.187532 0.20050401 2.4159602 1.5996363 1625.5704 959s 3700 2.1186808 0.2735013 2.4141937 1.9057216 1625.5704 959s 3800 2.1752481 0.21357202 2.3067618 1.5703983 1625.5704 959s 3900 2.1976728 0.18990792 2.4017814 1.4843601 1625.5704 959s 4000 2.1786303 0.20989248 2.3438733 1.578595 1625.5704 959s Loop time of 3.19884 on 1 procs for 2000 steps with 400 atoms 959s 959s Performance: 108039.087 tau/day, 625.226 timesteps/s, 250.090 katom-step/s 959s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 959s 959s MPI task timing breakdown: 959s Section | min time | avg time | max time |%varavg| %total 959s --------------------------------------------------------------- 959s Pair | 3.0183 | 3.0183 | 3.0183 | 0.0 | 94.36 959s Neigh | 0.005168 | 0.005168 | 0.005168 | 0.0 | 0.16 959s Comm | 0.0084286 | 0.0084286 | 0.0084286 | 0.0 | 0.26 959s Output | 0.024271 | 0.024271 | 0.024271 | 0.0 | 0.76 959s Modify | 0.13827 | 0.13827 | 0.13827 | 0.0 | 4.32 959s Other | | 0.004436 | | | 0.14 959s 959s Nlocal: 400 ave 400 max 400 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s Nghost: 208 ave 208 max 208 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s Neighs: 1932 ave 1932 max 1932 min 959s Histogram: 1 0 0 0 0 0 0 0 0 0 959s 959s Total # of neighbors = 1932 959s Ave neighs/atom = 4.83 959s Neighbor list builds = 50 959s Dangerous builds = 0 959s Total wall time: 0:00:05 959s run: OK 959s autopkgtest [17:16:12]: test ellipse: -----------------------] 960s ellipse PASS 960s autopkgtest [17:16:13]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 960s autopkgtest [17:16:13]: test flow: preparing testbed 962s Reading package lists... 962s Building dependency tree... 962s Reading state information... 962s Starting pkgProblemResolver with broken count: 0 962s Starting 2 pkgProblemResolver with broken count: 0 962s Done 962s The following NEW packages will be installed: 962s autopkgtest-satdep 962s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 962s Need to get 0 B/704 B of archives. 962s After this operation, 0 B of additional disk space will be used. 962s Get:1 /tmp/autopkgtest.pSx1TK/4-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 962s Selecting previously unselected package autopkgtest-satdep. 962s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 962s Preparing to unpack .../4-autopkgtest-satdep.deb ... 962s Unpacking autopkgtest-satdep (0) ... 962s Setting up autopkgtest-satdep (0) ... 964s (Reading database ... 56873 files and directories currently installed.) 964s Removing autopkgtest-satdep (0) ... 965s autopkgtest [17:16:18]: test flow: [----------------------- 965s LAMMPS (7 Feb 2024 - Update 1) 965s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 965s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 965s using 1 OpenMP thread(s) per MPI task 965s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 965s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 965s 2 by 1 by 1 MPI processor grid 965s Created 420 atoms 965s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 965s create_atoms CPU = 0.001 seconds 965s 60 atoms in group lower 965s 60 atoms in group upper 965s 120 atoms in group boundary 965s 300 atoms in group flow 965s Setting atom values ... 965s 60 settings made for type 965s Setting atom values ... 965s 60 settings made for type 965s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 965s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 965s Neighbor list info ... 965s update: every = 1 steps, delay = 5 steps, check = yes 965s max neighbors/atom: 2000, page size: 100000 965s master list distance cutoff = 1.42246 965s ghost atom cutoff = 1.42246 965s binsize = 0.71123, bins = 37 32 1 965s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 965s (1) pair lj/cut, perpetual 965s attributes: half, newton on 965s pair build: half/bin/atomonly/newton 965s stencil: half/bin/2d 965s bin: standard 965s Setting up Verlet run ... 965s Unit style : lj 965s Current step : 0 965s Time step : 0.003 965s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 965s Step Temp E_pair E_mol TotEng Press Volume 965s 0 1 0 0 0.71190476 0.52314537 571.54286 965s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 965s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 965s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 965s 2000 1 -0.41053025 0 0.30137451 2.8651905 571.54286 965s 2500 1.1226126 -0.37018872 0 0.42900451 2.9459225 571.54286 965s 3000 1 -0.40149829 0 0.31040647 2.7056256 571.54286 965s 3500 1.071429 -0.46774125 0 0.29501417 2.5582838 571.54286 965s 4000 1 -0.39054248 0 0.32136228 2.4314528 571.54286 965s 4500 1.029458 -0.40311018 0 0.32976584 2.5012442 571.54286 965s 5000 1 -0.44252019 0 0.26938457 2.3566317 571.54286 965s 5500 1.0715559 -0.4771158 0 0.28572997 2.420979 571.54286 965s 6000 1 -0.42490153 0 0.28700323 2.4032097 571.54286 965s 6500 1.1729217 -0.43515146 0 0.39985708 2.3670704 571.54286 965s 7000 1 -0.4539943 0 0.25791046 2.36148 571.54286 965s 7500 1.1676524 -0.40784405 0 0.42341328 2.699336 571.54286 965s 8000 1 -0.37626352 0 0.33564124 2.8174026 571.54286 965s 8500 1.1583539 -0.41258281 0 0.41205487 2.6617634 571.54286 965s 9000 1 -0.42918407 0 0.28272069 2.3090418 571.54286 965s 9500 1.0432103 -0.39042315 0 0.3522432 2.6910698 571.54286 965s 10000 1 -0.4676995 0 0.24420526 2.3898708 571.54286 965s Loop time of 0.49527 on 2 procs for 10000 steps with 420 atoms 965s 965s Performance: 5233505.106 tau/day, 20190.992 timesteps/s, 8.480 Matom-step/s 965s 37.3% CPU use with 2 MPI tasks x 1 OpenMP threads 965s 965s MPI task timing breakdown: 965s Section | min time | avg time | max time |%varavg| %total 965s --------------------------------------------------------------- 965s Pair | 0.076891 | 0.077152 | 0.077413 | 0.1 | 15.58 965s Neigh | 0.028148 | 0.02832 | 0.028493 | 0.1 | 5.72 965s Comm | 0.31587 | 0.3163 | 0.31672 | 0.1 | 63.86 965s Output | 0.0006213 | 0.00075577 | 0.00089024 | 0.0 | 0.15 965s Modify | 0.030195 | 0.030281 | 0.030366 | 0.0 | 6.11 965s Other | | 0.04246 | | | 8.57 965s 965s Nlocal: 210 ave 214 max 206 min 965s Histogram: 1 0 0 0 0 0 0 0 0 1 965s Nghost: 51 ave 52 max 50 min 965s Histogram: 1 0 0 0 0 0 0 0 0 1 965s Neighs: 472 ave 494 max 450 min 965s Histogram: 1 0 0 0 0 0 0 0 0 1 965s 965s Total # of neighbors = 944 965s Ave neighs/atom = 2.247619 965s Neighbor list builds = 994 965s Dangerous builds = 0 965s Total wall time: 0:00:00 966s LAMMPS (7 Feb 2024 - Update 1) 966s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 966s using 1 OpenMP thread(s) per MPI task 966s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 966s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 966s 1 by 1 by 1 MPI processor grid 966s Created 420 atoms 966s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 966s create_atoms CPU = 0.000 seconds 966s 60 atoms in group lower 966s 60 atoms in group upper 966s 120 atoms in group boundary 966s 300 atoms in group flow 966s Setting atom values ... 966s 60 settings made for type 966s Setting atom values ... 966s 60 settings made for type 966s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 966s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 966s Neighbor list info ... 966s update: every = 1 steps, delay = 5 steps, check = yes 966s max neighbors/atom: 2000, page size: 100000 966s master list distance cutoff = 1.42246 966s ghost atom cutoff = 1.42246 966s binsize = 0.71123, bins = 37 32 1 966s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 966s (1) pair lj/cut, perpetual 966s attributes: half, newton on 966s pair build: half/bin/atomonly/newton 966s stencil: half/bin/2d 966s bin: standard 966s Setting up Verlet run ... 966s Unit style : lj 966s Current step : 0 966s Time step : 0.003 966s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 966s Step Temp E_pair E_mol TotEng Press Volume 966s 0 1 0 0 0.71190476 0.52314537 571.54286 966s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 966s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 966s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 966s 2000 1 -0.40814262 0 0.30376214 2.9229597 571.54286 966s 2500 1.193035 -0.38493995 0 0.46438736 2.8340607 571.54286 966s 3000 1 -0.45564537 0 0.2562594 2.7506498 571.54286 966s 3500 1.0626882 -0.45013361 0 0.30639918 2.5530157 571.54286 966s 4000 1 -0.39613722 0 0.31576755 2.4669827 571.54286 966s 4500 1.0832856 -0.43003699 0 0.34115919 2.2569491 571.54286 966s 5000 1 -0.42733451 0 0.28457025 2.4685826 571.54286 966s 5500 1.0413391 -0.39346589 0 0.34786835 2.6348761 571.54286 966s 6000 1 -0.42845926 0 0.2834455 2.4988125 571.54286 966s 6500 1.0890296 -0.43775517 0 0.33753016 2.4384217 571.54286 966s 7000 1 -0.46023483 0 0.25166993 2.4429964 571.54286 966s 7500 1.0644341 -0.45175861 0 0.3060171 2.4324515 571.54286 966s 8000 1 -0.43920605 0 0.27269871 2.6469713 571.54286 966s 8500 1.0647184 -0.45399641 0 0.3039817 2.5748114 571.54286 966s 9000 1 -0.46453995 0 0.24736482 2.6591355 571.54286 966s 9500 1.0123 -0.44029216 0 0.28036906 2.413597 571.54286 966s 10000 1 -0.43826448 0 0.27364028 2.3699706 571.54286 966s Loop time of 0.280638 on 1 procs for 10000 steps with 420 atoms 966s 966s Performance: 9236104.660 tau/day, 35633.120 timesteps/s, 14.966 Matom-step/s 966s 97.5% CPU use with 1 MPI tasks x 1 OpenMP threads 966s 966s MPI task timing breakdown: 966s Section | min time | avg time | max time |%varavg| %total 966s --------------------------------------------------------------- 966s Pair | 0.15317 | 0.15317 | 0.15317 | 0.0 | 54.58 966s Neigh | 0.053993 | 0.053993 | 0.053993 | 0.0 | 19.24 966s Comm | 0.006403 | 0.006403 | 0.006403 | 0.0 | 2.28 966s Output | 0.00011277 | 0.00011277 | 0.00011277 | 0.0 | 0.04 966s Modify | 0.053762 | 0.053762 | 0.053762 | 0.0 | 19.16 966s Other | | 0.01319 | | | 4.70 966s 966s Nlocal: 420 ave 420 max 420 min 966s Histogram: 1 0 0 0 0 0 0 0 0 0 966s Nghost: 50 ave 50 max 50 min 966s Histogram: 1 0 0 0 0 0 0 0 0 0 966s Neighs: 946 ave 946 max 946 min 966s Histogram: 1 0 0 0 0 0 0 0 0 0 966s 966s Total # of neighbors = 946 966s Ave neighs/atom = 2.252381 966s Neighbor list builds = 979 966s Dangerous builds = 0 966s Total wall time: 0:00:00 966s LAMMPS (7 Feb 2024 - Update 1) 966s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 966s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 966s using 1 OpenMP thread(s) per MPI task 966s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 966s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 966s 2 by 1 by 1 MPI processor grid 966s Created 420 atoms 966s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 966s create_atoms CPU = 0.001 seconds 966s 60 atoms in group lower 966s 60 atoms in group upper 966s 120 atoms in group boundary 966s 300 atoms in group flow 966s Setting atom values ... 966s 60 settings made for type 966s Setting atom values ... 966s 60 settings made for type 966s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 966s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 966s Neighbor list info ... 966s update: every = 1 steps, delay = 5 steps, check = yes 966s max neighbors/atom: 2000, page size: 100000 966s master list distance cutoff = 1.42246 966s ghost atom cutoff = 1.42246 966s binsize = 0.71123, bins = 37 32 1 966s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 966s (1) pair lj/cut, perpetual 966s attributes: half, newton on 966s pair build: half/bin/atomonly/newton 966s stencil: half/bin/2d 966s bin: standard 966s Setting up Verlet run ... 966s Unit style : lj 966s Current step : 0 966s Time step : 0.003 966s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 966s Step Temp E_pair E_mol TotEng Press Volume 966s 0 1 0 0 0.71190476 0.52314537 571.54286 966s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 966s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 966s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 966s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 966s 2500 1.2272957 -0.42381901 0 0.44989865 1.4544608 570.15856 966s 3000 1 -0.4914342 0 0.22047056 1.534595 554.98633 966s 3500 1.2444794 -0.59760758 0 0.2883432 1.8754993 537.01599 966s 4000 1 -0.69890444 0 0.013000318 2.1406234 521.49815 966s 4500 1.2188346 -0.74991278 0 0.1177814 2.7508733 507.73977 966s 5000 1 -0.7445329 0 -0.032628135 3.1054873 501.68859 966s 5500 1.1836415 -0.76775125 0 0.074888789 2.6990153 506.01181 966s 6000 1 -0.7575268 0 -0.04562204 2.4858442 508.26846 966s 6500 1.2076032 -0.68884147 0 0.17085699 2.3143206 512.291 966s 7000 1 -0.66241571 0 0.049489051 2.0686009 516.38744 966s 7500 1.2123711 -0.71994819 0 0.14314459 2.1753937 513.88371 966s 8000 1 -0.71001477 0 0.0018899921 2.0630419 509.80458 966s 8500 1.1991563 -0.78355267 0 0.070132412 2.493712 504.22835 966s 9000 1 -0.72719051 0 -0.015285749 2.27793 505.75742 967s 9500 1.2073739 -0.76518329 0 0.094351911 2.5653732 503.29071 967s 10000 1 -0.78638614 0 -0.074481378 2.3564468 504.38491 967s Loop time of 0.559136 on 2 procs for 10000 steps with 420 atoms 967s 967s Performance: 4635722.706 tau/day, 17884.733 timesteps/s, 7.512 Matom-step/s 967s 37.7% CPU use with 2 MPI tasks x 1 OpenMP threads 967s 967s MPI task timing breakdown: 967s Section | min time | avg time | max time |%varavg| %total 967s --------------------------------------------------------------- 967s Pair | 0.087606 | 0.087701 | 0.087796 | 0.0 | 15.69 967s Neigh | 0.016396 | 0.016425 | 0.016454 | 0.0 | 2.94 967s Comm | 0.29433 | 0.29434 | 0.29436 | 0.0 | 52.64 967s Output | 0.00060911 | 0.00073353 | 0.00085795 | 0.0 | 0.13 967s Modify | 0.10828 | 0.10858 | 0.10888 | 0.1 | 19.42 967s Other | | 0.05135 | | | 9.18 967s 967s Nlocal: 210 ave 211 max 209 min 967s Histogram: 1 0 0 0 0 0 0 0 0 1 967s Nghost: 50 ave 51 max 49 min 967s Histogram: 1 0 0 0 0 0 0 0 0 1 967s Neighs: 563.5 ave 569 max 558 min 967s Histogram: 1 0 0 0 0 0 0 0 0 1 967s 967s Total # of neighbors = 1127 967s Ave neighs/atom = 2.6833333 967s Neighbor list builds = 560 967s Dangerous builds = 0 967s Total wall time: 0:00:00 967s LAMMPS (7 Feb 2024 - Update 1) 967s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 967s using 1 OpenMP thread(s) per MPI task 967s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 967s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 967s 1 by 1 by 1 MPI processor grid 967s Created 420 atoms 967s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 967s create_atoms CPU = 0.000 seconds 967s 60 atoms in group lower 967s 60 atoms in group upper 967s 120 atoms in group boundary 967s 300 atoms in group flow 967s Setting atom values ... 967s 60 settings made for type 967s Setting atom values ... 967s 60 settings made for type 967s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 967s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 967s Neighbor list info ... 967s update: every = 1 steps, delay = 5 steps, check = yes 967s max neighbors/atom: 2000, page size: 100000 967s master list distance cutoff = 1.42246 967s ghost atom cutoff = 1.42246 967s binsize = 0.71123, bins = 37 32 1 967s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 967s (1) pair lj/cut, perpetual 967s attributes: half, newton on 967s pair build: half/bin/atomonly/newton 967s stencil: half/bin/2d 967s bin: standard 967s Setting up Verlet run ... 967s Unit style : lj 967s Current step : 0 967s Time step : 0.003 967s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 967s Step Temp E_pair E_mol TotEng Press Volume 967s 0 1 0 0 0.71190476 0.52314537 571.54286 967s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 967s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 967s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 967s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 967s 2500 1.2236323 -0.40128447 0 0.46982521 1.427689 570.03729 967s 3000 1 -0.48849374 0 0.22341102 1.5091345 553.64637 967s 3500 1.2404604 -0.63017693 0 0.25291274 1.7681156 535.22588 967s 4000 1 -0.71303348 0 -0.001128721 2.2083475 516.7312 967s 4500 1.2316246 -0.77421749 0 0.10258194 2.5788522 503.1817 967s 5000 1 -0.7999552 0 -0.088050433 3.1546066 498.48431 967s 5500 1.2347442 -0.74592478 0 0.13309548 2.695455 502.87799 967s 6000 1 -0.67044678 0 0.041457981 2.2074541 513.82275 967s 6500 1.2102356 -0.63751404 0 0.22405846 1.9921588 517.21223 967s 7000 1 -0.65043667 0 0.061468095 1.8816222 517.22883 967s 7500 1.2366099 -0.68011129 0 0.20023717 2.0387578 515.33777 967s 8000 1 -0.72046833 0 -0.0085635721 2.1380846 510.42066 967s 8500 1.2219154 -0.79786917 0 0.072018214 2.2824348 503.99311 967s 9000 1 -0.78517366 0 -0.073268895 2.6920699 500.15016 967s 9500 1.1934208 -0.7468438 0 0.10275813 2.4971524 501.17896 967s 10000 1 -0.67478993 0 0.037114833 2.3681765 504.37054 967s Loop time of 0.326975 on 1 procs for 10000 steps with 420 atoms 967s 967s Performance: 7927220.119 tau/day, 30583.411 timesteps/s, 12.845 Matom-step/s 967s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 967s 967s MPI task timing breakdown: 967s Section | min time | avg time | max time |%varavg| %total 967s --------------------------------------------------------------- 967s Pair | 0.17419 | 0.17419 | 0.17419 | 0.0 | 53.27 967s Neigh | 0.032142 | 0.032142 | 0.032142 | 0.0 | 9.83 967s Comm | 0.0057123 | 0.0057123 | 0.0057123 | 0.0 | 1.75 967s Output | 0.00013832 | 0.00013832 | 0.00013832 | 0.0 | 0.04 967s Modify | 0.1015 | 0.1015 | 0.1015 | 0.0 | 31.04 967s Other | | 0.01329 | | | 4.07 967s 967s Nlocal: 420 ave 420 max 420 min 967s Histogram: 1 0 0 0 0 0 0 0 0 0 967s Nghost: 51 ave 51 max 51 min 967s Histogram: 1 0 0 0 0 0 0 0 0 0 967s Neighs: 1150 ave 1150 max 1150 min 967s Histogram: 1 0 0 0 0 0 0 0 0 0 967s 967s Total # of neighbors = 1150 967s Ave neighs/atom = 2.7380952 967s Neighbor list builds = 563 967s Dangerous builds = 0 967s Total wall time: 0:00:00 967s run: OK 967s autopkgtest [17:16:20]: test flow: -----------------------] 968s flow PASS 968s autopkgtest [17:16:21]: test flow: - - - - - - - - - - results - - - - - - - - - - 968s autopkgtest [17:16:21]: test friction: preparing testbed 970s Reading package lists... 970s Building dependency tree... 970s Reading state information... 970s Starting pkgProblemResolver with broken count: 0 970s Starting 2 pkgProblemResolver with broken count: 0 970s Done 970s The following NEW packages will be installed: 970s autopkgtest-satdep 970s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 970s Need to get 0 B/704 B of archives. 970s After this operation, 0 B of additional disk space will be used. 970s Get:1 /tmp/autopkgtest.pSx1TK/5-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 971s Selecting previously unselected package autopkgtest-satdep. 971s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 971s Preparing to unpack .../5-autopkgtest-satdep.deb ... 971s Unpacking autopkgtest-satdep (0) ... 971s Setting up autopkgtest-satdep (0) ... 972s (Reading database ... 56873 files and directories currently installed.) 972s Removing autopkgtest-satdep (0) ... 973s autopkgtest [17:16:26]: test friction: [----------------------- 973s LAMMPS (7 Feb 2024 - Update 1) 973s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 973s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 973s using 1 OpenMP thread(s) per MPI task 973s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 973s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 973s 2 by 1 by 1 MPI processor grid 973s Created 750 atoms 973s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 973s create_atoms CPU = 0.001 seconds 973s Created 750 atoms 973s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 973s create_atoms CPU = 0.000 seconds 973s Created 112 atoms 973s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 973s create_atoms CPU = 0.000 seconds 973s Created 112 atoms 973s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 973s create_atoms CPU = 0.001 seconds 973s 750 atoms in group lo 973s 862 atoms in group lo 973s 750 atoms in group hi 973s 862 atoms in group hi 973s 150 atoms in group lo-fixed 973s 150 atoms in group hi-fixed 973s 300 atoms in group boundary 973s 1424 atoms in group mobile 973s Setting atom values ... 973s 150 settings made for type 973s Setting atom values ... 973s 150 settings made for type 973s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 973s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 973s Neighbor list info ... 973s update: every = 1 steps, delay = 5 steps, check = yes 973s max neighbors/atom: 2000, page size: 100000 973s master list distance cutoff = 2.8 973s ghost atom cutoff = 2.8 973s binsize = 1.4, bins = 41 31 1 973s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 973s (1) pair lj/cut, perpetual 973s attributes: half, newton on 973s pair build: half/bin/atomonly/newton 973s stencil: half/bin/2d 973s bin: standard 973s Setting up Verlet run ... 973s Unit style : lj 973s Current step : 0 973s Time step : 0.0025 973s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 973s Step Temp E_pair E_mol TotEng Press Volume 973s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 974s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 974s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 975s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 975s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 976s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 977s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314788 2444.9333 977s 7000 0.11587085 -3.0413277 0 -2.9935075 -0.37543775 2444.9333 978s 8000 0.1 -3.029647 0 -2.9883767 -0.41884104 2444.9333 978s 9000 0.11588457 -3.0253422 0 -2.9775163 -0.43584065 2444.9333 979s 10000 0.1 -3.0293042 0 -2.9880339 -0.36809832 2444.9333 979s 11000 0.11830962 -3.029318 0 -2.9804913 -0.44710474 2444.9333 980s 12000 0.1 -3.0283785 0 -2.9871082 -0.20225766 2444.9333 981s 13000 0.11646107 -3.0351824 0 -2.9871185 -0.46506235 2444.9333 981s 14000 0.11264391 -3.0399048 0 -2.9934163 -0.23851225 2444.9333 982s 15000 0.11397557 -3.0400714 0 -2.9930333 -0.27494778 2444.9333 982s 16000 0.11527553 -3.0423634 0 -2.9947889 -0.27314794 2444.9333 983s 17000 0.11820003 -3.0419531 0 -2.9931715 -0.39533728 2444.9333 983s 18000 0.11165087 -3.0494285 0 -3.0033499 -0.25447692 2444.9333 984s 19000 0.11450729 -3.0488755 0 -3.0016179 -0.27183418 2444.9333 984s 20000 0.1090499 -3.0490281 0 -3.0040229 -0.39612969 2444.9333 984s Loop time of 11.1499 on 2 procs for 20000 steps with 1724 atoms 984s 984s Performance: 387446.417 tau/day, 1793.733 timesteps/s, 3.092 Matom-step/s 984s 45.8% CPU use with 2 MPI tasks x 1 OpenMP threads 984s 984s MPI task timing breakdown: 984s Section | min time | avg time | max time |%varavg| %total 984s --------------------------------------------------------------- 984s Pair | 4.1381 | 4.4692 | 4.8002 | 15.7 | 40.08 984s Neigh | 0.17 | 0.18357 | 0.19714 | 3.2 | 1.65 984s Comm | 5.6417 | 6.0024 | 6.363 | 14.7 | 53.83 984s Output | 0.0013515 | 0.0023866 | 0.0034217 | 2.1 | 0.02 984s Modify | 0.22034 | 0.23527 | 0.2502 | 3.1 | 2.11 984s Other | | 0.2572 | | | 2.31 984s 984s Nlocal: 862 ave 874 max 850 min 984s Histogram: 1 0 0 0 0 0 0 0 0 1 984s Nghost: 165.5 ave 166 max 165 min 984s Histogram: 1 0 0 0 0 0 0 0 0 1 984s Neighs: 7198 ave 7283 max 7113 min 984s Histogram: 1 0 0 0 0 0 0 0 0 1 984s 984s Total # of neighbors = 14396 984s Ave neighs/atom = 8.350348 984s Neighbor list builds = 720 984s Dangerous builds = 0 984s Total wall time: 0:00:11 985s LAMMPS (7 Feb 2024 - Update 1) 994s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 994s using 1 OpenMP thread(s) per MPI task 994s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 994s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 994s 1 by 1 by 1 MPI processor grid 994s Created 750 atoms 994s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 994s create_atoms CPU = 0.001 seconds 994s Created 750 atoms 994s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 994s create_atoms CPU = 0.000 seconds 994s Created 112 atoms 994s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 994s create_atoms CPU = 0.000 seconds 994s Created 112 atoms 994s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 994s create_atoms CPU = 0.000 seconds 994s 750 atoms in group lo 994s 862 atoms in group lo 994s 750 atoms in group hi 994s 862 atoms in group hi 994s 150 atoms in group lo-fixed 994s 150 atoms in group hi-fixed 994s 300 atoms in group boundary 994s 1424 atoms in group mobile 994s Setting atom values ... 994s 150 settings made for type 994s Setting atom values ... 994s 150 settings made for type 994s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 994s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 994s Neighbor list info ... 994s update: every = 1 steps, delay = 5 steps, check = yes 994s max neighbors/atom: 2000, page size: 100000 994s master list distance cutoff = 2.8 994s ghost atom cutoff = 2.8 994s binsize = 1.4, bins = 41 31 1 994s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 994s (1) pair lj/cut, perpetual 994s attributes: half, newton on 994s pair build: half/bin/atomonly/newton 994s stencil: half/bin/2d 994s bin: standard 994s Setting up Verlet run ... 994s Unit style : lj 994s Current step : 0 994s Time step : 0.0025 994s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 994s Step Temp E_pair E_mol TotEng Press Volume 994s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 994s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 994s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 994s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 994s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 994s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 994s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 994s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431662 2444.9333 994s 8000 0.10658321 -3.036405 0 -2.9924178 -0.4572299 2444.9333 994s 9000 0.11648934 -3.0271687 0 -2.9790932 -0.45898613 2444.9333 994s 10000 0.10677611 -3.0303232 0 -2.9862564 -0.35269781 2444.9333 994s 11000 0.11746006 -3.0346344 0 -2.9861583 -0.46341365 2444.9333 994s 12000 0.112074 -3.036913 0 -2.9906597 -0.21768573 2444.9333 994s 13000 0.11249017 -3.0395382 0 -2.9931132 -0.44391864 2444.9333 994s 14000 0.11381248 -3.0362108 0 -2.9892401 -0.30885868 2444.9333 994s 15000 0.10964575 -3.0436265 0 -2.9983754 -0.26625672 2444.9333 994s 16000 0.10798733 -3.0460787 0 -3.001512 -0.27971711 2444.9333 994s 17000 0.11191725 -3.0455618 0 -2.9993732 -0.36993854 2444.9333 994s 18000 0.11418143 -3.0485595 0 -3.0014364 -0.24776847 2444.9333 994s 19000 0.11028213 -3.0473558 0 -3.001842 -0.30249398 2444.9333 994s 20000 0.11512925 -3.0504969 0 -3.0029827 -0.36022205 2444.9333 994s Loop time of 9.70001 on 1 procs for 20000 steps with 1724 atoms 994s 994s Performance: 445360.182 tau/day, 2061.853 timesteps/s, 3.555 Matom-step/s 994s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 994s 994s MPI task timing breakdown: 994s Section | min time | avg time | max time |%varavg| %total 994s --------------------------------------------------------------- 994s Pair | 8.756 | 8.756 | 8.756 | 0.0 | 90.27 994s Neigh | 0.35804 | 0.35804 | 0.35804 | 0.0 | 3.69 994s Comm | 0.028579 | 0.028579 | 0.028579 | 0.0 | 0.29 994s Output | 0.00077697 | 0.00077697 | 0.00077697 | 0.0 | 0.01 994s Modify | 0.44955 | 0.44955 | 0.44955 | 0.0 | 4.63 994s Other | | 0.107 | | | 1.10 994s 994s Nlocal: 1724 ave 1724 max 1724 min 994s Histogram: 1 0 0 0 0 0 0 0 0 0 994s Nghost: 145 ave 145 max 145 min 994s Histogram: 1 0 0 0 0 0 0 0 0 0 994s Neighs: 14397 ave 14397 max 14397 min 994s Histogram: 1 0 0 0 0 0 0 0 0 0 994s 994s Total # of neighbors = 14397 994s Ave neighs/atom = 8.3509281 994s Neighbor list builds = 723 994s Dangerous builds = 0 994s Total wall time: 0:00:09 994s run: OK 995s autopkgtest [17:16:48]: test friction: -----------------------] 995s friction PASS 995s autopkgtest [17:16:48]: test friction: - - - - - - - - - - results - - - - - - - - - - 995s autopkgtest [17:16:48]: test hugo: preparing testbed 997s Reading package lists... 997s Building dependency tree... 997s Reading state information... 997s Starting pkgProblemResolver with broken count: 0 997s Starting 2 pkgProblemResolver with broken count: 0 997s Done 997s The following NEW packages will be installed: 997s autopkgtest-satdep 997s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 997s Need to get 0 B/704 B of archives. 997s After this operation, 0 B of additional disk space will be used. 997s Get:1 /tmp/autopkgtest.pSx1TK/6-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [704 B] 997s Selecting previously unselected package autopkgtest-satdep. 997s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56873 files and directories currently installed.) 997s Preparing to unpack .../6-autopkgtest-satdep.deb ... 997s Unpacking autopkgtest-satdep (0) ... 997s Setting up autopkgtest-satdep (0) ... 999s (Reading database ... 56873 files and directories currently installed.) 999s Removing autopkgtest-satdep (0) ... 1000s autopkgtest [17:16:53]: test hugo: [----------------------- 1000s LAMMPS (7 Feb 2024 - Update 1) 1000s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1000s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1000s using 1 OpenMP thread(s) per MPI task 1000s Lattice spacing in x,y,z = 1.4142135 2 2 1000s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1000s 1 by 1 by 2 MPI processor grid 1000s Created 1000 atoms 1000s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1000s create_atoms CPU = 0.001 seconds 1000s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1000s Neighbor list info ... 1000s update: every = 1 steps, delay = 0 steps, check = yes 1000s max neighbors/atom: 2000, page size: 100000 1000s master list distance cutoff = 1.8475372 1000s ghost atom cutoff = 1.8475372 1000s binsize = 0.92376862, bins = 8 11 11 1000s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1000s (1) pair lj/cubic, perpetual 1000s attributes: half, newton on 1000s pair build: half/bin/atomonly/newton 1000s stencil: half/bin/3d 1000s bin: standard 1000s Setting up cg style minimization ... 1000s Unit style : lj 1000s Current step : 0 1000s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 1000s (src/min.cpp:219) 1000s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 1000s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 1000s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 1000s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 1000s 134 0 -6.3344253 -6.3344253 -4.2957391e-13 -4.6556764e-13 -4.6545223e-13 6.9780267 9.8684199 9.8684199 1000s Loop time of 0.112121 on 2 procs for 134 steps with 1000 atoms 1000s 1000s 44.7% CPU use with 2 MPI tasks x 1 OpenMP threads 1000s 1000s Minimization stats: 1000s Stopping criterion = force tolerance 1000s Energy initial, next-to-last, final = 1000s -6.29375358358574 -6.33442531515467 -6.33442531515467 1000s Force two-norm initial, final = 3395.2895 5.526433e-10 1000s Force max component initial, final = 1960.2713 3.2059964e-10 1000s Final line search alpha, max atom move = 1 3.2059964e-10 1000s Iterations, force evaluations = 134 137 1000s 1000s MPI task timing breakdown: 1000s Section | min time | avg time | max time |%varavg| %total 1000s --------------------------------------------------------------- 1000s Pair | 0.036381 | 0.03961 | 0.04284 | 1.6 | 35.33 1000s Neigh | 0.00051724 | 0.00055441 | 0.00059158 | 0.0 | 0.49 1000s Comm | 0.051031 | 0.054325 | 0.057619 | 1.4 | 48.45 1000s Output | 0.00011226 | 0.00011428 | 0.00011629 | 0.0 | 0.10 1000s Modify | 0 | 0 | 0 | 0.0 | 0.00 1000s Other | | 0.01752 | | | 15.62 1000s 1000s Nlocal: 500 ave 550 max 450 min 1000s Histogram: 1 0 0 0 0 0 0 0 0 1 1000s Nghost: 1214 ave 1264 max 1164 min 1000s Histogram: 1 0 0 0 0 0 0 0 0 1 1000s Neighs: 10500 ave 11550 max 9450 min 1000s Histogram: 1 0 0 0 0 0 0 0 0 1 1000s 1000s Total # of neighbors = 21000 1000s Ave neighs/atom = 21 1000s Neighbor list builds = 1 1000s Dangerous builds = 0 1000s System init for write_restart ... 1000s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1000s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1000s using 1 OpenMP thread(s) per MPI task 1000s Reading restart file ... 1000s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1000s restoring atom style atomic from restart 1000s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1000s 1 by 1 by 2 MPI processor grid 1000s restoring pair style lj/cubic from restart 1000s 1000 atoms 1000s read_restart CPU = 0.001 seconds 1000s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1000s Neighbor list info ... 1000s update: every = 1 steps, delay = 0 steps, check = yes 1000s max neighbors/atom: 2000, page size: 100000 1000s master list distance cutoff = 1.7475372 1000s ghost atom cutoff = 1.7475372 1000s binsize = 0.87376862, bins = 8 12 12 1000s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1000s (1) pair lj/cubic, perpetual 1000s attributes: half, newton on 1000s pair build: half/bin/atomonly/newton 1000s stencil: half/bin/3d 1000s bin: standard 1000s Setting up Verlet run ... 1000s Unit style : lj 1000s Current step : 0 1000s Time step : 0.001 1000s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1000s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1000s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 1001s 1000 0.010266754 0.015384732 -2.1717334 -4183.9192 129.07798 58.489025 8.3141524 -4.1817628 0.9362044 23.511491 3.7372332 1002s 2000 0.40259797 0.60329306 -5.627962 -1085.8312 12.843116 1.8560907 9.4470663 -1.0808065 -0.37219276 14.040385 0.6226867 1003s 3000 0.47352764 0.70958118 -3.847268 -3270.82 65.659321 23.910002 8.6682025 -3.2676824 -0.14827512 19.052005 2.3460318 1003s 4000 0.51027892 0.76465296 -4.3666607 -2668.4808 36.299422 5.4253511 8.7365217 -2.6648788 -0.43242827 14.580921 1.6947004 1004s 5000 0.27107084 0.40619965 -4.8148544 -1808.6901 35.499158 7.8616668 8.7438741 -1.8042815 -0.17683868 14.465657 1.6705446 1005s 6000 0.14589565 0.21862463 -4.1603429 -2363.5903 43.618418 5.9789884 8.3935297 -2.3596486 -0.050591412 14.026367 2.1169125 1006s 7000 0.085822195 0.12860456 -4.2874019 -2281.4454 40.483746 3.874914 8.3489633 -2.2772866 -0.011160894 13.315551 2.0696635 1007s 8000 0.039594243 0.059331974 -4.3555951 -2176.8532 39.840893 3.7201608 8.3381853 -2.1725569 0.028292259 13.163321 2.0603537 1008s 9000 0.025376486 0.038026664 -4.2983996 -2330.0794 39.628092 2.631482 8.2935294 -2.3258191 0.032864503 12.942681 2.084285 1008s 10000 0.020305022 0.030427075 -4.2090968 -1864.3718 42.005843 3.1326248 8.2404246 -1.8601931 0.074717463 13.108473 2.1814026 1008s Loop time of 8.45821 on 2 procs for 10000 steps with 1000 atoms 1008s 1008s Performance: 102149.300 tau/day, 1182.284 timesteps/s, 1.182 Matom-step/s 1008s 46.7% CPU use with 2 MPI tasks x 1 OpenMP threads 1008s 1008s MPI task timing breakdown: 1008s Section | min time | avg time | max time |%varavg| %total 1008s --------------------------------------------------------------- 1008s Pair | 3.2196 | 3.2256 | 3.2316 | 0.3 | 38.14 1008s Neigh | 0.10412 | 0.10655 | 0.10898 | 0.7 | 1.26 1008s Comm | 4.0607 | 4.0667 | 4.0726 | 0.3 | 48.08 1008s Output | 0.0013603 | 0.0019258 | 0.0024912 | 1.3 | 0.02 1008s Modify | 0.90525 | 0.91075 | 0.91625 | 0.6 | 10.77 1008s Other | | 0.1467 | | | 1.73 1008s 1008s Nlocal: 500 ave 509 max 491 min 1008s Histogram: 1 0 0 0 0 0 0 0 0 1 1008s Nghost: 1346.5 ave 1369 max 1324 min 1008s Histogram: 1 0 0 0 0 0 0 0 0 1 1008s Neighs: 10311.5 ave 10391 max 10232 min 1008s Histogram: 1 0 0 0 0 0 0 0 0 1 1008s 1008s Total # of neighbors = 20623 1008s Ave neighs/atom = 20.623 1008s Neighbor list builds = 205 1008s Dangerous builds = 0 1008s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1008s using 1 OpenMP thread(s) per MPI task 1008s Reading restart file ... 1009s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1009s restoring atom style atomic from restart 1009s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1009s 1 by 1 by 2 MPI processor grid 1009s restoring pair style lj/cubic from restart 1009s 1000 atoms 1009s read_restart CPU = 0.001 seconds 1009s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1009s Neighbor list info ... 1009s update: every = 1 steps, delay = 0 steps, check = yes 1009s max neighbors/atom: 2000, page size: 100000 1009s master list distance cutoff = 1.7475372 1009s ghost atom cutoff = 1.7475372 1009s binsize = 0.87376862, bins = 8 12 12 1009s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1009s (1) pair lj/cubic, perpetual 1009s attributes: half, newton on 1009s pair build: half/bin/atomonly/newton 1009s stencil: half/bin/3d 1009s bin: standard 1009s Setting up Verlet run ... 1009s Unit style : lj 1009s Current step : 0 1009s Time step : 0.001 1009s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1009s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1009s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 1009s 1000 0.0062790167 0.0094091065 -5.989181 -1670.9917 18.916499 7.5833446 9.2337867 -1.6650119 0.023434204 13.976079 0.92136905 1010s 2000 0.0066373266 0.0099460339 -5.4562974 -2537.9609 37.066673 15.536927 8.9495838 -2.5325146 0.10236546 16.325445 1.5455989 1011s 3000 0.006890427 0.010325305 -5.3657707 -2643.943 39.911802 16.807453 8.9154493 -2.6385876 0.11827588 16.639682 1.6328058 1011s 4000 0.0073314031 0.010986107 -5.3630545 -2655.872 40.003435 16.849611 8.9144058 -2.6505199 0.11864983 16.649819 1.6355581 1012s 5000 0.0075004567 0.011239434 -5.3630119 -2664.6029 39.9983 16.845885 8.9144863 -2.6592512 0.11845678 16.649441 1.6353853 1013s 6000 0.0078159402 0.011712186 -5.3629866 -2673.5606 39.999501 16.84634 8.9144972 -2.6682093 0.11829898 16.649784 1.6354006 1014s 7000 0.0078365866 0.011743125 -5.3625076 -2682.4138 40.001112 16.844623 8.9145083 -2.6770631 0.11814173 16.650214 1.6354243 1014s 8000 0.0075482436 0.011311043 -5.3616205 -2690.9824 39.996485 16.835974 8.9145436 -2.6856321 0.11792207 16.649554 1.6352999 1015s 9000 0.0083133885 0.012457613 -5.362258 -2700.1342 39.99904 16.841287 8.9145642 -2.6947844 0.11777124 16.650263 1.6353348 1016s 10000 0.0086355586 0.012940385 -5.3622381 -2709.0315 39.997759 16.839976 8.9145913 -2.7036822 0.11757678 16.650228 1.6352858 1016s Loop time of 7.38774 on 2 procs for 10000 steps with 1000 atoms 1016s 1016s Performance: 116950.584 tau/day, 1353.595 timesteps/s, 1.354 Matom-step/s 1016s 46.7% CPU use with 2 MPI tasks x 1 OpenMP threads 1016s 1016s MPI task timing breakdown: 1016s Section | min time | avg time | max time |%varavg| %total 1016s --------------------------------------------------------------- 1016s Pair | 2.8021 | 2.8374 | 2.8727 | 2.1 | 38.41 1016s Neigh | 0.0051603 | 0.0051739 | 0.0051875 | 0.0 | 0.07 1016s Comm | 3.4489 | 3.4809 | 3.5129 | 1.7 | 47.12 1016s Output | 0.0012289 | 0.0017398 | 0.0022508 | 1.2 | 0.02 1016s Modify | 0.90162 | 0.91622 | 0.93081 | 1.5 | 12.40 1016s Other | | 0.1463 | | | 1.98 1016s 1016s Nlocal: 500 ave 508 max 492 min 1016s Histogram: 1 0 0 0 0 0 0 0 0 1 1016s Nghost: 1214 ave 1222 max 1206 min 1016s Histogram: 1 0 0 0 0 0 0 0 0 1 1016s Neighs: 10500 ave 10668 max 10332 min 1016s Histogram: 1 0 0 0 0 0 0 0 0 1 1016s 1016s Total # of neighbors = 21000 1016s Ave neighs/atom = 21 1016s Neighbor list builds = 10 1016s Dangerous builds = 0 1016s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1016s using 1 OpenMP thread(s) per MPI task 1016s Reading restart file ... 1016s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1016s restoring atom style atomic from restart 1016s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1016s 1 by 1 by 2 MPI processor grid 1016s restoring pair style lj/cubic from restart 1016s 1000 atoms 1016s read_restart CPU = 0.001 seconds 1016s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1016s Neighbor list info ... 1016s update: every = 1 steps, delay = 0 steps, check = yes 1016s max neighbors/atom: 2000, page size: 100000 1016s master list distance cutoff = 1.7475372 1016s ghost atom cutoff = 1.7475372 1016s binsize = 0.87376862, bins = 8 12 12 1016s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1016s (1) pair lj/cubic, perpetual 1016s attributes: half, newton on 1016s pair build: half/bin/atomonly/newton 1016s stencil: half/bin/3d 1016s bin: standard 1016s Setting up Verlet run ... 1016s Unit style : lj 1016s Current step : 0 1016s Time step : 0.001 1016s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1016s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1016s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355329 -0.00025901829 9.8684199 0 -0.0048552721 2.3792932 0.0041071767 1017s 1000 0.0079519127 0.011915941 -5.50188 -838.80672 35.61641 14.888864 8.9677618 -0.83331675 0.093886135 16.160598 1.5002751 1017s 2000 0.019411054 0.029087464 -5.2936665 -1019.5497 41.77353 17.564044 8.8958463 -1.0142851 0.11811209 16.853902 1.687248 1018s 3000 0.047492482 0.071167484 -5.3441861 -971.66654 39.02349 16.097707 8.9321705 -0.96639352 0.073376741 16.597136 1.600557 1019s 4000 0.12096417 0.18126481 -5.2102393 -1315.5664 40.846153 16.436163 8.9200987 -1.3105374 0.017574117 16.873813 1.6478442 1020s 5000 0.1272463 0.19067858 -5.2517864 -1192.2753 39.105833 15.560562 8.9406854 -1.1872142 -0.00025457398 16.689339 1.5950732 1020s 6000 0.14515651 0.21751704 -5.1820215 -1372.0064 40.682715 16.119979 8.9220924 -1.3670419 -0.0066818447 16.857436 1.6428451 1021s 7000 0.12286771 0.18411727 -5.2596973 -1200.0518 39.255412 15.703071 8.938111 -1.1949762 0.0073588891 16.698492 1.6002966 1022s 8000 0.1428801 0.21410583 -5.1748689 -1340.8702 40.704199 16.116121 8.9238602 -1.3359094 -0.0085191302 16.877378 1.6417704 1023s 9000 0.12012635 0.18000933 -5.2541332 -1187.2981 39.322347 15.708304 8.9368444 -1.182224 0.0081737382 16.701561 1.6027307 1023s 10000 0.1485814 0.22264922 -5.184468 -1359.9408 40.542555 16.055637 8.9246711 -1.3549789 -0.010330357 16.85094 1.6378163 1023s Loop time of 7.48371 on 2 procs for 10000 steps with 1000 atoms 1023s 1023s Performance: 115450.682 tau/day, 1336.235 timesteps/s, 1.336 Matom-step/s 1023s 46.9% CPU use with 2 MPI tasks x 1 OpenMP threads 1023s 1023s MPI task timing breakdown: 1023s Section | min time | avg time | max time |%varavg| %total 1023s --------------------------------------------------------------- 1023s Pair | 2.8584 | 2.8606 | 2.8627 | 0.1 | 38.22 1023s Neigh | 0.049726 | 0.049949 | 0.050171 | 0.1 | 0.67 1023s Comm | 3.5038 | 3.5061 | 3.5084 | 0.1 | 46.85 1023s Output | 0.0013994 | 0.0020124 | 0.0026254 | 1.4 | 0.03 1023s Modify | 0.91285 | 0.91876 | 0.92467 | 0.6 | 12.28 1023s Other | | 0.1463 | | | 1.96 1023s 1023s Nlocal: 500 ave 510 max 490 min 1023s Histogram: 1 0 0 0 0 0 0 0 0 1 1023s Nghost: 1216.5 ave 1227 max 1206 min 1023s Histogram: 1 0 0 0 0 0 0 0 0 1 1023s Neighs: 10311 ave 10520 max 10102 min 1023s Histogram: 1 0 0 0 0 0 0 0 0 1 1023s 1023s Total # of neighbors = 20622 1023s Ave neighs/atom = 20.622 1023s Neighbor list builds = 95 1023s Dangerous builds = 0 1023s Total wall time: 0:00:23 1024s LAMMPS (7 Feb 2024 - Update 1) 1024s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1024s using 1 OpenMP thread(s) per MPI task 1024s Lattice spacing in x,y,z = 1.4142135 2 2 1024s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1024s 1 by 1 by 1 MPI processor grid 1024s Created 1000 atoms 1024s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1024s create_atoms CPU = 0.001 seconds 1024s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1024s Neighbor list info ... 1024s update: every = 1 steps, delay = 0 steps, check = yes 1024s max neighbors/atom: 2000, page size: 100000 1024s master list distance cutoff = 1.8475372 1024s ghost atom cutoff = 1.8475372 1024s binsize = 0.92376862, bins = 8 11 11 1024s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1024s (1) pair lj/cubic, perpetual 1024s attributes: half, newton on 1024s pair build: half/bin/atomonly/newton 1024s stencil: half/bin/3d 1024s bin: standard 1024s Setting up cg style minimization ... 1024s Unit style : lj 1024s Current step : 0 1024s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 1024s (src/min.cpp:219) 1024s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 1024s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 1024s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 1024s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 1024s 134 0 -6.3344253 -6.3344253 -4.3566216e-13 -4.7438184e-13 -4.6860149e-13 6.9780267 9.8684199 9.8684199 1024s Loop time of 0.0908957 on 1 procs for 134 steps with 1000 atoms 1024s 1024s 92.7% CPU use with 1 MPI tasks x 1 OpenMP threads 1024s 1024s Minimization stats: 1024s Stopping criterion = force tolerance 1024s Energy initial, next-to-last, final = 1024s -6.29375358358556 -6.33442531515503 -6.33442531515503 1024s Force two-norm initial, final = 3395.2895 5.6047601e-10 1024s Force max component initial, final = 1960.2713 3.2666928e-10 1024s Final line search alpha, max atom move = 1 3.2666928e-10 1024s Iterations, force evaluations = 134 137 1024s 1024s MPI task timing breakdown: 1024s Section | min time | avg time | max time |%varavg| %total 1024s --------------------------------------------------------------- 1024s Pair | 0.076601 | 0.076601 | 0.076601 | 0.0 | 84.27 1024s Neigh | 0.0011037 | 0.0011037 | 0.0011037 | 0.0 | 1.21 1024s Comm | 0.0012983 | 0.0012983 | 0.0012983 | 0.0 | 1.43 1024s Output | 1.7805e-05 | 1.7805e-05 | 1.7805e-05 | 0.0 | 0.02 1024s Modify | 0 | 0 | 0 | 0.0 | 0.00 1024s Other | | 0.01187 | | | 13.06 1024s 1024s Nlocal: 1000 ave 1000 max 1000 min 1024s Histogram: 1 0 0 0 0 0 0 0 0 0 1024s Nghost: 1724 ave 1724 max 1724 min 1024s Histogram: 1 0 0 0 0 0 0 0 0 0 1024s Neighs: 21000 ave 21000 max 21000 min 1024s Histogram: 1 0 0 0 0 0 0 0 0 0 1024s 1024s Total # of neighbors = 21000 1024s Ave neighs/atom = 21 1024s Neighbor list builds = 1 1024s Dangerous builds = 0 1024s System init for write_restart ... 1024s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1024s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1024s using 1 OpenMP thread(s) per MPI task 1024s Reading restart file ... 1024s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1024s restoring atom style atomic from restart 1024s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1024s 1 by 1 by 1 MPI processor grid 1024s restoring pair style lj/cubic from restart 1024s 1000 atoms 1024s read_restart CPU = 0.000 seconds 1024s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1024s Neighbor list info ... 1024s update: every = 1 steps, delay = 0 steps, check = yes 1024s max neighbors/atom: 2000, page size: 100000 1024s master list distance cutoff = 1.7475372 1024s ghost atom cutoff = 1.7475372 1024s binsize = 0.87376862, bins = 8 12 12 1024s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1031s (1) pair lj/cubic, perpetual 1031s attributes: half, newton on 1031s pair build: half/bin/atomonly/newton 1031s stencil: half/bin/3d 1031s bin: standard 1031s Setting up Verlet run ... 1031s Unit style : lj 1031s Current step : 0 1031s Time step : 0.001 1031s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1031s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1031s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1031s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 1031s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 1031s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 1031s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 1031s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 1031s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 1031s 7000 0.094832865 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659777 12.95347 1.8841809 1031s 8000 0.043338745 0.06494311 -4.6249402 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 1031s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 1031s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 1031s Loop time of 7.62859 on 1 procs for 10000 steps with 1000 atoms 1031s 1031s Performance: 113258.212 tau/day, 1310.859 timesteps/s, 1.311 Matom-step/s 1031s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads 1031s 1031s MPI task timing breakdown: 1031s Section | min time | avg time | max time |%varavg| %total 1031s --------------------------------------------------------------- 1031s Pair | 6.5628 | 6.5628 | 6.5628 | 0.0 | 86.03 1031s Neigh | 0.19467 | 0.19467 | 0.19467 | 0.0 | 2.55 1031s Comm | 0.1065 | 0.1065 | 0.1065 | 0.0 | 1.40 1031s Output | 0.0005084 | 0.0005084 | 0.0005084 | 0.0 | 0.01 1031s Modify | 0.71762 | 0.71762 | 0.71762 | 0.0 | 9.41 1031s Other | | 0.0465 | | | 0.61 1031s 1031s Nlocal: 1000 ave 1000 max 1000 min 1031s Histogram: 1 0 0 0 0 0 0 0 0 0 1031s Nghost: 1886 ave 1886 max 1886 min 1031s Histogram: 1 0 0 0 0 0 0 0 0 0 1031s Neighs: 20874 ave 20874 max 20874 min 1031s Histogram: 1 0 0 0 0 0 0 0 0 0 1031s 1031s Total # of neighbors = 20874 1031s Ave neighs/atom = 20.874 1031s Neighbor list builds = 188 1031s Dangerous builds = 0 1031s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1031s using 1 OpenMP thread(s) per MPI task 1031s Reading restart file ... 1031s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1031s restoring atom style atomic from restart 1031s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1031s 1 by 1 by 1 MPI processor grid 1031s restoring pair style lj/cubic from restart 1031s 1000 atoms 1031s read_restart CPU = 0.001 seconds 1031s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1031s Neighbor list info ... 1038s update: every = 1 steps, delay = 0 steps, check = yes 1038s max neighbors/atom: 2000, page size: 100000 1038s master list distance cutoff = 1.7475372 1038s ghost atom cutoff = 1.7475372 1038s binsize = 0.87376862, bins = 8 12 12 1038s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1038s (1) pair lj/cubic, perpetual 1038s attributes: half, newton on 1038s pair build: half/bin/atomonly/newton 1038s stencil: half/bin/3d 1038s bin: standard 1038s Setting up Verlet run ... 1038s Unit style : lj 1038s Current step : 0 1038s Time step : 0.001 1038s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1038s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1038s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1038s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 1038s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 1038s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 1038s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 1038s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 1038s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 1038s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 1038s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 1038s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 1038s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 1038s Loop time of 6.49635 on 1 procs for 10000 steps with 1000 atoms 1038s 1038s Performance: 132997.764 tau/day, 1539.326 timesteps/s, 1.539 Matom-step/s 1038s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 1038s 1038s MPI task timing breakdown: 1038s Section | min time | avg time | max time |%varavg| %total 1038s --------------------------------------------------------------- 1038s Pair | 5.6275 | 5.6275 | 5.6275 | 0.0 | 86.63 1038s Neigh | 0.011481 | 0.011481 | 0.011481 | 0.0 | 0.18 1038s Comm | 0.093428 | 0.093428 | 0.093428 | 0.0 | 1.44 1038s Output | 0.00060635 | 0.00060635 | 0.00060635 | 0.0 | 0.01 1038s Modify | 0.71863 | 0.71863 | 0.71863 | 0.0 | 11.06 1038s Other | | 0.04466 | | | 0.69 1038s 1038s Nlocal: 1000 ave 1000 max 1000 min 1038s Histogram: 1 0 0 0 0 0 0 0 0 0 1038s Nghost: 1724 ave 1724 max 1724 min 1038s Histogram: 1 0 0 0 0 0 0 0 0 0 1038s Neighs: 21000 ave 21000 max 21000 min 1038s Histogram: 1 0 0 0 0 0 0 0 0 0 1038s 1038s Total # of neighbors = 21000 1038s Ave neighs/atom = 21 1038s Neighbor list builds = 11 1038s Dangerous builds = 0 1038s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1038s using 1 OpenMP thread(s) per MPI task 1038s Reading restart file ... 1038s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1038s restoring atom style atomic from restart 1044s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1044s 1 by 1 by 1 MPI processor grid 1044s restoring pair style lj/cubic from restart 1044s 1000 atoms 1044s read_restart CPU = 0.001 seconds 1044s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1044s Neighbor list info ... 1044s update: every = 1 steps, delay = 0 steps, check = yes 1044s max neighbors/atom: 2000, page size: 100000 1044s master list distance cutoff = 1.7475372 1044s ghost atom cutoff = 1.7475372 1044s binsize = 0.87376862, bins = 8 12 12 1044s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1044s (1) pair lj/cubic, perpetual 1044s attributes: half, newton on 1044s pair build: half/bin/atomonly/newton 1044s stencil: half/bin/3d 1044s bin: standard 1044s Setting up Verlet run ... 1044s Unit style : lj 1044s Current step : 0 1044s Time step : 0.001 1044s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1044s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1044s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1044s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 1044s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 1044s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 1044s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 1044s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 1044s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 1044s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 1044s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 1044s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 1044s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 1044s Loop time of 6.60549 on 1 procs for 10000 steps with 1000 atoms 1044s 1044s Performance: 130800.210 tau/day, 1513.891 timesteps/s, 1.514 Matom-step/s 1044s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 1044s 1044s MPI task timing breakdown: 1044s Section | min time | avg time | max time |%varavg| %total 1044s --------------------------------------------------------------- 1044s Pair | 5.6584 | 5.6584 | 5.6584 | 0.0 | 85.66 1044s Neigh | 0.096672 | 0.096672 | 0.096672 | 0.0 | 1.46 1044s Comm | 0.095235 | 0.095235 | 0.095235 | 0.0 | 1.44 1044s Output | 0.00056196 | 0.00056196 | 0.00056196 | 0.0 | 0.01 1044s Modify | 0.70892 | 0.70892 | 0.70892 | 0.0 | 10.73 1044s Other | | 0.04572 | | | 0.69 1044s 1044s Nlocal: 1000 ave 1000 max 1000 min 1044s Histogram: 1 0 0 0 0 0 0 0 0 0 1044s Nghost: 1724 ave 1724 max 1724 min 1044s Histogram: 1 0 0 0 0 0 0 0 0 0 1044s Neighs: 20654 ave 20654 max 20654 min 1044s Histogram: 1 0 0 0 0 0 0 0 0 0 1044s 1044s Total # of neighbors = 20654 1044s Ave neighs/atom = 20.654 1044s Neighbor list builds = 94 1044s Dangerous builds = 0 1044s Total wall time: 0:00:20 1044s run: OK 1045s autopkgtest [17:17:38]: test hugo: -----------------------] 1045s hugo PASS 1045s autopkgtest [17:17:38]: test hugo: - - - - - - - - - - results - - - - - - - - - - 1046s autopkgtest [17:17:39]: test command1: preparing testbed 1146s autopkgtest [17:19:19]: testbed dpkg architecture: s390x 1146s autopkgtest [17:19:19]: testbed apt version: 2.9.6 1146s autopkgtest [17:19:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1147s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 1147s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [50.6 kB] 1148s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 1148s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3336 B] 1148s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 1148s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [88.2 kB] 1148s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2548 B] 1148s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 1148s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 1148s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [363 kB] 1148s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [8624 B] 1148s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 1148s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 1148s Fetched 1015 kB in 1s (856 kB/s) 1148s Reading package lists... 1151s Reading package lists... 1151s Building dependency tree... 1151s Reading state information... 1151s Calculating upgrade... 1151s The following packages will be upgraded: 1151s libnetplan1 netplan-generator netplan.io python3-netplan 1151s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1151s Need to get 276 kB of archives. 1151s After this operation, 1024 B of additional disk space will be used. 1151s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x netplan-generator s390x 1.0.1-1ubuntu2 [59.5 kB] 1152s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x python3-netplan s390x 1.0.1-1ubuntu2 [23.0 kB] 1152s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x netplan.io s390x 1.0.1-1ubuntu2 [66.2 kB] 1152s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libnetplan1 s390x 1.0.1-1ubuntu2 [127 kB] 1152s Fetched 276 kB in 1s (465 kB/s) 1152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54702 files and directories currently installed.) 1152s Preparing to unpack .../netplan-generator_1.0.1-1ubuntu2_s390x.deb ... 1152s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 1152s Unpacking netplan-generator (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 1152s Preparing to unpack .../python3-netplan_1.0.1-1ubuntu2_s390x.deb ... 1152s Unpacking python3-netplan (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 1152s Preparing to unpack .../netplan.io_1.0.1-1ubuntu2_s390x.deb ... 1152s Unpacking netplan.io (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 1152s Preparing to unpack .../libnetplan1_1.0.1-1ubuntu2_s390x.deb ... 1152s Unpacking libnetplan1:s390x (1.0.1-1ubuntu2) over (1.0.1-1ubuntu1) ... 1152s Setting up libnetplan1:s390x (1.0.1-1ubuntu2) ... 1152s Setting up python3-netplan (1.0.1-1ubuntu2) ... 1152s Setting up netplan-generator (1.0.1-1ubuntu2) ... 1152s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 1152s Setting up netplan.io (1.0.1-1ubuntu2) ... 1152s Processing triggers for libc-bin (2.39-0ubuntu9) ... 1152s Processing triggers for man-db (2.12.1-2) ... 1153s Processing triggers for dbus (1.14.10-4ubuntu4) ... 1153s Reading package lists... 1153s Building dependency tree... 1153s Reading state information... 1153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1154s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 1154s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 1154s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 1154s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 1155s Reading package lists... 1155s Reading package lists... 1155s Building dependency tree... 1155s Reading state information... 1155s Calculating upgrade... 1155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1155s Reading package lists... 1155s Building dependency tree... 1155s Reading state information... 1156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1160s Reading package lists... 1160s Building dependency tree... 1160s Reading state information... 1160s Starting pkgProblemResolver with broken count: 0 1160s Starting 2 pkgProblemResolver with broken count: 0 1160s Done 1161s The following additional packages will be installed: 1161s autoconf automake autotools-dev cpp-12 gcc-12 gcc-12-base gfortran-12 1161s libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 1161s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 1161s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 1161s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 1161s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 1161s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 1161s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev 1161s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjs-jquery 1161s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 1161s liblapack3 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 1161s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 1161s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 1161s libpmix2t64 libpnetcdf0d libproj25 libpython3.12t64 librdmacm1t64 libsz2 1161s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 1161s libubsan1 libvoro++1 libvtk9.3 libvulkan1 libx11-xcb1 libxcb-dri2-0 1161s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 1161s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 1161s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin 1161s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 1161s python3-lammps x11-common zlib1g-dev 1161s Suggested packages: 1161s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 1161s cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib gfortran-12-doc 1161s libcoarrays-dev libfftw3-bin libfftw3-dev glew-utils libjs-jquery-ui-docs 1161s libtool-doc openmpi-doc proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc 1161s opencl-icd gfortran | fortran-compiler 1161s Recommended packages: 1161s libgl1-amber-dri javascript-common lammps-doc libtool 1161s libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd python3-mpi4py 1161s The following NEW packages will be installed: 1161s autoconf automake autopkgtest-satdep autotools-dev cpp-12 gcc-12 gcc-12-base 1161s gfortran-12 libaec0 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 1161s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 1161s libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 1161s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 1161s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 1161s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 1161s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhwloc-dev 1161s libhwloc-plugins libhwloc15 libibverbs-dev libisl23 libitm1 libjs-jquery 1161s libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev liblammps0t64 1161s liblapack3 libllvm17t64 libltdl-dev libltdl7 libmpc3 libmunge2 1161s libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 1161s libopenmpi-dev libopenmpi3t64 libpciaccess0 libpixman-1-0 libpmix-dev 1161s libpmix2t64 libpnetcdf0d libproj25 libpython3.12t64 librdmacm1t64 libsz2 1161s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 1161s libubsan1 libvoro++1 libvtk9.3 libvulkan1 libx11-xcb1 libxcb-dri2-0 1161s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 1161s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 1161s libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin 1161s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 1161s python3-lammps x11-common zlib1g-dev 1161s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. 1161s Need to get 151 MB/151 MB of archives. 1161s After this operation, 631 MB of additional disk space will be used. 1161s Get:1 /tmp/autopkgtest.pSx1TK/7-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 1161s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x m4 s390x 1.4.19-4build1 [256 kB] 1161s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x autoconf all 2.71-3 [339 kB] 1161s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x autotools-dev all 20220109.1 [44.9 kB] 1161s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x automake all 1:1.16.5-1.3ubuntu1 [558 kB] 1162s Get:6 http://ftpmaster.internal/ubuntu oracular/universe s390x gcc-12-base s390x 12.4.0-1ubuntu1 [46.3 kB] 1162s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libisl23 s390x 0.26-3build1 [713 kB] 1162s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libmpc3 s390x 1.3.1-1build1 [58.4 kB] 1162s Get:9 http://ftpmaster.internal/ubuntu oracular/universe s390x cpp-12 s390x 12.4.0-1ubuntu1 [8155 kB] 1165s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libcc1-0 s390x 14.1.0-1ubuntu1 [50.7 kB] 1165s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 1165s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libitm1 s390x 14.1.0-1ubuntu1 [31.1 kB] 1165s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libatomic1 s390x 14.1.0-1ubuntu1 [9378 B] 1165s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libasan8 s390x 14.1.0-1ubuntu1 [3003 kB] 1165s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libubsan1 s390x 14.1.0-1ubuntu1 [1189 kB] 1166s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x libgcc-12-dev s390x 12.4.0-1ubuntu1 [850 kB] 1166s Get:17 http://ftpmaster.internal/ubuntu oracular/universe s390x gcc-12 s390x 12.4.0-1ubuntu1 [16.2 MB] 1170s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 1170s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x libgfortran-12-dev s390x 12.4.0-1ubuntu1 [515 kB] 1170s Get:20 http://ftpmaster.internal/ubuntu oracular/universe s390x gfortran-12 s390x 12.4.0-1ubuntu1 [8566 kB] 1172s Get:21 http://ftpmaster.internal/ubuntu oracular/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 1172s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 1172s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x libpixman-1-0 s390x 0.42.2-1build1 [206 kB] 1172s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 1172s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 1172s Get:26 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 1172s Get:27 http://ftpmaster.internal/ubuntu oracular/main s390x libcairo2 s390x 1.18.0-3build1 [589 kB] 1172s Get:28 http://ftpmaster.internal/ubuntu oracular/universe s390x libdouble-conversion3 s390x 3.3.0-1build1 [43.9 kB] 1172s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-amdgpu1 s390x 2.4.121-2 [21.3 kB] 1172s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-nouveau2 s390x 2.4.121-2 [18.1 kB] 1172s Get:31 http://ftpmaster.internal/ubuntu oracular/main s390x libdrm-radeon1 s390x 2.4.121-2 [22.2 kB] 1172s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-2.1-7t64 s390x 2.1.12-stable-10 [145 kB] 1172s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-extra-2.1-7t64 s390x 2.1.12-stable-10 [64.1 kB] 1172s Get:34 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-pthreads-2.1-7t64 s390x 2.1.12-stable-10 [7870 B] 1172s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-openssl-2.1-7t64 s390x 2.1.12-stable-10 [14.9 kB] 1172s Get:36 http://ftpmaster.internal/ubuntu oracular/main s390x libevent-dev s390x 2.1.12-stable-10 [276 kB] 1173s Get:37 http://ftpmaster.internal/ubuntu oracular/main s390x librdmacm1t64 s390x 52.0-2 [73.1 kB] 1173s Get:38 http://ftpmaster.internal/ubuntu oracular/universe s390x libfabric1 s390x 1.17.0-3build2 [566 kB] 1173s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x libfftw3-double3 s390x 3.3.10-1ubuntu3 [512 kB] 1173s Get:40 http://ftpmaster.internal/ubuntu oracular/main s390x libvulkan1 s390x 1.3.283.0-1 [156 kB] 1173s Get:41 http://ftpmaster.internal/ubuntu oracular/main s390x libglapi-mesa s390x 24.0.9-0ubuntu2 [65.9 kB] 1173s Get:42 http://ftpmaster.internal/ubuntu oracular/main s390x libllvm17t64 s390x 1:17.0.6-12 [31.0 MB] 1179s Get:43 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri3-0 s390x 1.17.0-2 [7616 B] 1179s Get:44 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1-mesa-dri s390x 24.0.9-0ubuntu2 [7077 kB] 1180s Get:45 http://ftpmaster.internal/ubuntu oracular/main s390x libglvnd0 s390x 1.7.0-1build1 [110 kB] 1180s Get:46 http://ftpmaster.internal/ubuntu oracular/main s390x libx11-xcb1 s390x 2:1.8.7-1build1 [7826 B] 1180s Get:47 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-dri2-0 s390x 1.17.0-2 [7448 B] 1180s Get:48 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-glx0 s390x 1.17.0-2 [26.0 kB] 1180s Get:49 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-present0 s390x 1.17.0-2 [6244 B] 1180s Get:50 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-randr0 s390x 1.17.0-2 [19.2 kB] 1180s Get:51 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-sync1 s390x 1.17.0-2 [9488 B] 1180s Get:52 http://ftpmaster.internal/ubuntu oracular/main s390x libxcb-xfixes0 s390x 1.17.0-2 [10.5 kB] 1180s Get:53 http://ftpmaster.internal/ubuntu oracular/main s390x libxfixes3 s390x 1:6.0.0-2build1 [11.3 kB] 1180s Get:54 http://ftpmaster.internal/ubuntu oracular/main s390x libxshmfence1 s390x 1.3-1build5 [4772 B] 1180s Get:55 http://ftpmaster.internal/ubuntu oracular/main s390x libxxf86vm1 s390x 1:1.1.4-1build4 [9630 B] 1180s Get:56 http://ftpmaster.internal/ubuntu oracular/main s390x libglx-mesa0 s390x 24.0.9-0ubuntu2 [174 kB] 1180s Get:57 http://ftpmaster.internal/ubuntu oracular/main s390x libglx0 s390x 1.7.0-1build1 [32.2 kB] 1180s Get:58 http://ftpmaster.internal/ubuntu oracular/main s390x libgl1 s390x 1.7.0-1build1 [142 kB] 1180s Get:59 http://ftpmaster.internal/ubuntu oracular/universe s390x libgl2ps1.4 s390x 1.4.2+dfsg1-2build1 [44.1 kB] 1180s Get:60 http://ftpmaster.internal/ubuntu oracular/universe s390x libglew2.2 s390x 2.2.0-4build1 [195 kB] 1180s Get:61 http://ftpmaster.internal/ubuntu oracular/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 1180s Get:62 http://ftpmaster.internal/ubuntu oracular/universe s390x libhdf5-103-1t64 s390x 1.10.10+repack-3.1ubuntu4 [1436 kB] 1180s Get:63 http://ftpmaster.internal/ubuntu oracular/universe s390x libhdf5-hl-100t64 s390x 1.10.10+repack-3.1ubuntu4 [58.0 kB] 1180s Get:64 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc15 s390x 2.10.0-1build1 [177 kB] 1180s Get:65 http://ftpmaster.internal/ubuntu oracular/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1180s Get:66 http://ftpmaster.internal/ubuntu oracular/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1180s Get:67 http://ftpmaster.internal/ubuntu oracular/main s390x libjsoncpp25 s390x 1.9.5-6build1 [82.5 kB] 1180s Get:68 http://ftpmaster.internal/ubuntu oracular/universe s390x libkim-api2 s390x 2.3.0-1 [544 kB] 1181s Get:69 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 1181s Get:70 http://ftpmaster.internal/ubuntu oracular/universe s390x libnetcdf19t64 s390x 1:4.9.2-6 [498 kB] 1181s Get:71 http://ftpmaster.internal/ubuntu oracular/universe s390x libmunge2 s390x 0.5.15-4build1 [15.6 kB] 1181s Get:72 http://ftpmaster.internal/ubuntu oracular/main s390x libpciaccess0 s390x 0.17-3build1 [19.0 kB] 1181s Get:73 http://ftpmaster.internal/ubuntu oracular/main s390x libxnvctrl0 s390x 510.47.03-0ubuntu4 [12.7 kB] 1181s Get:74 http://ftpmaster.internal/ubuntu oracular/universe s390x ocl-icd-libopencl1 s390x 2.3.2-1build1 [41.1 kB] 1181s Get:75 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc-plugins s390x 2.10.0-1build1 [16.3 kB] 1181s Get:76 http://ftpmaster.internal/ubuntu oracular/universe s390x libpmix2t64 s390x 5.0.1-4.1build1 [728 kB] 1181s Get:77 http://ftpmaster.internal/ubuntu oracular/universe s390x libopenmpi3t64 s390x 4.1.6-7ubuntu2 [2437 kB] 1182s Get:78 http://ftpmaster.internal/ubuntu oracular/universe s390x libpnetcdf0d s390x 1.13.0-1 [1004 kB] 1182s Get:79 http://ftpmaster.internal/ubuntu oracular/main s390x libpython3.12t64 s390x 3.12.4-1ubuntu1 [2476 kB] 1182s Get:80 http://ftpmaster.internal/ubuntu oracular/universe s390x libvoro++1 s390x 0.5+revert-to-0.4.6+dfsg1-1 [110 kB] 1182s Get:81 http://ftpmaster.internal/ubuntu oracular/main s390x libogg0 s390x 1.3.5-3build1 [24.4 kB] 1182s Get:82 http://ftpmaster.internal/ubuntu oracular/main s390x libopengl0 s390x 1.7.0-1build1 [48.0 kB] 1182s Get:83 http://ftpmaster.internal/ubuntu oracular/universe s390x proj-data all 9.4.1-1 [7892 kB] 1184s Get:84 http://ftpmaster.internal/ubuntu oracular/universe s390x libproj25 s390x 9.4.1-1 [1398 kB] 1184s Get:85 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 1184s Get:86 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 1184s Get:87 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 1184s Get:88 http://ftpmaster.internal/ubuntu oracular/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 1184s Get:89 http://ftpmaster.internal/ubuntu oracular/main s390x libtheora0 s390x 1.1.1+dfsg.1-16.1build3 [271 kB] 1184s Get:90 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 1184s Get:91 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1184s Get:92 http://ftpmaster.internal/ubuntu oracular/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 1184s Get:93 http://ftpmaster.internal/ubuntu oracular/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 1185s Get:94 http://ftpmaster.internal/ubuntu oracular/universe s390x libvtk9.3 s390x 9.3.0+dfsg1-1 [27.1 MB] 1190s Get:95 http://ftpmaster.internal/ubuntu oracular/universe s390x liblammps0t64 s390x 20240207+dfsg-1.1build4 [7871 kB] 1191s Get:96 http://ftpmaster.internal/ubuntu oracular/universe s390x openmpi-common all 4.1.6-7ubuntu2 [170 kB] 1191s Get:97 http://ftpmaster.internal/ubuntu oracular/main s390x libnl-3-dev s390x 3.7.0-0.3build1 [104 kB] 1191s Get:98 http://ftpmaster.internal/ubuntu oracular/main s390x libnl-route-3-dev s390x 3.7.0-0.3build1 [218 kB] 1191s Get:99 http://ftpmaster.internal/ubuntu oracular/main s390x libibverbs-dev s390x 52.0-2 [712 kB] 1192s Get:100 http://ftpmaster.internal/ubuntu oracular/main s390x libnuma-dev s390x 2.0.18-1build1 [38.9 kB] 1192s Get:101 http://ftpmaster.internal/ubuntu oracular/main s390x libltdl7 s390x 2.4.7-7build1 [41.8 kB] 1192s Get:102 http://ftpmaster.internal/ubuntu oracular/main s390x libltdl-dev s390x 2.4.7-7build1 [170 kB] 1192s Get:103 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc-dev s390x 2.10.0-1build1 [273 kB] 1192s Get:104 http://ftpmaster.internal/ubuntu oracular/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB] 1193s Get:105 http://ftpmaster.internal/ubuntu oracular/universe s390x libpmix-dev s390x 5.0.1-4.1build1 [4041 kB] 1194s Get:106 http://ftpmaster.internal/ubuntu oracular/universe s390x openmpi-bin s390x 4.1.6-7ubuntu2 [84.5 kB] 1194s Get:107 http://ftpmaster.internal/ubuntu oracular/universe s390x libopenmpi-dev s390x 4.1.6-7ubuntu2 [825 kB] 1194s Get:108 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x mpi-default-dev s390x 1.17 [3106 B] 1194s Get:109 http://ftpmaster.internal/ubuntu oracular/universe s390x liblammps-dev s390x 20240207+dfsg-1.1build4 [112 kB] 1194s Get:110 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x mpi-default-bin s390x 1.17 [2296 B] 1194s Get:111 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-lammps s390x 20240207+dfsg-1.1build4 [70.5 kB] 1195s Fetched 151 MB in 34s (4469 kB/s) 1195s Selecting previously unselected package m4. 1195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54702 files and directories currently installed.) 1195s Preparing to unpack .../000-m4_1.4.19-4build1_s390x.deb ... 1195s Unpacking m4 (1.4.19-4build1) ... 1195s Selecting previously unselected package autoconf. 1195s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 1195s Unpacking autoconf (2.71-3) ... 1195s Selecting previously unselected package autotools-dev. 1195s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 1195s Unpacking autotools-dev (20220109.1) ... 1195s Selecting previously unselected package automake. 1195s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 1195s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 1195s Selecting previously unselected package gcc-12-base:s390x. 1195s Preparing to unpack .../004-gcc-12-base_12.4.0-1ubuntu1_s390x.deb ... 1195s Unpacking gcc-12-base:s390x (12.4.0-1ubuntu1) ... 1195s Selecting previously unselected package libisl23:s390x. 1195s Preparing to unpack .../005-libisl23_0.26-3build1_s390x.deb ... 1195s Unpacking libisl23:s390x (0.26-3build1) ... 1195s Selecting previously unselected package libmpc3:s390x. 1195s Preparing to unpack .../006-libmpc3_1.3.1-1build1_s390x.deb ... 1195s Unpacking libmpc3:s390x (1.3.1-1build1) ... 1195s Selecting previously unselected package cpp-12. 1195s Preparing to unpack .../007-cpp-12_12.4.0-1ubuntu1_s390x.deb ... 1195s Unpacking cpp-12 (12.4.0-1ubuntu1) ... 1195s Selecting previously unselected package libcc1-0:s390x. 1195s Preparing to unpack .../008-libcc1-0_14.1.0-1ubuntu1_s390x.deb ... 1195s Unpacking libcc1-0:s390x (14.1.0-1ubuntu1) ... 1195s Selecting previously unselected package libgomp1:s390x. 1195s Preparing to unpack .../009-libgomp1_14.1.0-1ubuntu1_s390x.deb ... 1195s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ... 1195s Selecting previously unselected package libitm1:s390x. 1195s Preparing to unpack .../010-libitm1_14.1.0-1ubuntu1_s390x.deb ... 1195s Unpacking libitm1:s390x (14.1.0-1ubuntu1) ... 1195s Selecting previously unselected package libatomic1:s390x. 1195s Preparing to unpack .../011-libatomic1_14.1.0-1ubuntu1_s390x.deb ... 1195s Unpacking libatomic1:s390x (14.1.0-1ubuntu1) ... 1195s Selecting previously unselected package libasan8:s390x. 1195s Preparing to unpack .../012-libasan8_14.1.0-1ubuntu1_s390x.deb ... 1195s Unpacking libasan8:s390x (14.1.0-1ubuntu1) ... 1196s Selecting previously unselected package libubsan1:s390x. 1196s Preparing to unpack .../013-libubsan1_14.1.0-1ubuntu1_s390x.deb ... 1196s Unpacking libubsan1:s390x (14.1.0-1ubuntu1) ... 1196s Selecting previously unselected package libgcc-12-dev:s390x. 1196s Preparing to unpack .../014-libgcc-12-dev_12.4.0-1ubuntu1_s390x.deb ... 1196s Unpacking libgcc-12-dev:s390x (12.4.0-1ubuntu1) ... 1196s Selecting previously unselected package gcc-12. 1196s Preparing to unpack .../015-gcc-12_12.4.0-1ubuntu1_s390x.deb ... 1196s Unpacking gcc-12 (12.4.0-1ubuntu1) ... 1196s Selecting previously unselected package libgfortran5:s390x. 1196s Preparing to unpack .../016-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 1196s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 1196s Selecting previously unselected package libgfortran-12-dev:s390x. 1196s Preparing to unpack .../017-libgfortran-12-dev_12.4.0-1ubuntu1_s390x.deb ... 1196s Unpacking libgfortran-12-dev:s390x (12.4.0-1ubuntu1) ... 1196s Selecting previously unselected package gfortran-12. 1196s Preparing to unpack .../018-gfortran-12_12.4.0-1ubuntu1_s390x.deb ... 1196s Unpacking gfortran-12 (12.4.0-1ubuntu1) ... 1196s Selecting previously unselected package libaec0:s390x. 1196s Preparing to unpack .../019-libaec0_1.1.3-1_s390x.deb ... 1196s Unpacking libaec0:s390x (1.1.3-1) ... 1196s Selecting previously unselected package libblas3:s390x. 1196s Preparing to unpack .../020-libblas3_3.12.0-3build1_s390x.deb ... 1196s Unpacking libblas3:s390x (3.12.0-3build1) ... 1196s Selecting previously unselected package libpixman-1-0:s390x. 1196s Preparing to unpack .../021-libpixman-1-0_0.42.2-1build1_s390x.deb ... 1196s Unpacking libpixman-1-0:s390x (0.42.2-1build1) ... 1196s Selecting previously unselected package libxcb-render0:s390x. 1196s Preparing to unpack .../022-libxcb-render0_1.17.0-2_s390x.deb ... 1196s Unpacking libxcb-render0:s390x (1.17.0-2) ... 1196s Selecting previously unselected package libxcb-shm0:s390x. 1196s Preparing to unpack .../023-libxcb-shm0_1.17.0-2_s390x.deb ... 1196s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 1196s Selecting previously unselected package libxrender1:s390x. 1196s Preparing to unpack .../024-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 1196s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 1196s Selecting previously unselected package libcairo2:s390x. 1196s Preparing to unpack .../025-libcairo2_1.18.0-3build1_s390x.deb ... 1196s Unpacking libcairo2:s390x (1.18.0-3build1) ... 1196s Selecting previously unselected package libdouble-conversion3:s390x. 1196s Preparing to unpack .../026-libdouble-conversion3_3.3.0-1build1_s390x.deb ... 1196s Unpacking libdouble-conversion3:s390x (3.3.0-1build1) ... 1196s Selecting previously unselected package libdrm-amdgpu1:s390x. 1196s Preparing to unpack .../027-libdrm-amdgpu1_2.4.121-2_s390x.deb ... 1196s Unpacking libdrm-amdgpu1:s390x (2.4.121-2) ... 1196s Selecting previously unselected package libdrm-nouveau2:s390x. 1196s Preparing to unpack .../028-libdrm-nouveau2_2.4.121-2_s390x.deb ... 1196s Unpacking libdrm-nouveau2:s390x (2.4.121-2) ... 1196s Selecting previously unselected package libdrm-radeon1:s390x. 1196s Preparing to unpack .../029-libdrm-radeon1_2.4.121-2_s390x.deb ... 1196s Unpacking libdrm-radeon1:s390x (2.4.121-2) ... 1196s Selecting previously unselected package libevent-2.1-7t64:s390x. 1196s Preparing to unpack .../030-libevent-2.1-7t64_2.1.12-stable-10_s390x.deb ... 1196s Unpacking libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 1196s Selecting previously unselected package libevent-extra-2.1-7t64:s390x. 1196s Preparing to unpack .../031-libevent-extra-2.1-7t64_2.1.12-stable-10_s390x.deb ... 1196s Unpacking libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 1196s Selecting previously unselected package libevent-pthreads-2.1-7t64:s390x. 1196s Preparing to unpack .../032-libevent-pthreads-2.1-7t64_2.1.12-stable-10_s390x.deb ... 1196s Unpacking libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 1196s Selecting previously unselected package libevent-openssl-2.1-7t64:s390x. 1196s Preparing to unpack .../033-libevent-openssl-2.1-7t64_2.1.12-stable-10_s390x.deb ... 1196s Unpacking libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 1197s Selecting previously unselected package libevent-dev. 1197s Preparing to unpack .../034-libevent-dev_2.1.12-stable-10_s390x.deb ... 1197s Unpacking libevent-dev (2.1.12-stable-10) ... 1197s Selecting previously unselected package librdmacm1t64:s390x. 1197s Preparing to unpack .../035-librdmacm1t64_52.0-2_s390x.deb ... 1197s Unpacking librdmacm1t64:s390x (52.0-2) ... 1197s Selecting previously unselected package libfabric1:s390x. 1197s Preparing to unpack .../036-libfabric1_1.17.0-3build2_s390x.deb ... 1197s Unpacking libfabric1:s390x (1.17.0-3build2) ... 1197s Selecting previously unselected package libfftw3-double3:s390x. 1197s Preparing to unpack .../037-libfftw3-double3_3.3.10-1ubuntu3_s390x.deb ... 1197s Unpacking libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 1197s Selecting previously unselected package libvulkan1:s390x. 1197s Preparing to unpack .../038-libvulkan1_1.3.283.0-1_s390x.deb ... 1197s Unpacking libvulkan1:s390x (1.3.283.0-1) ... 1197s Selecting previously unselected package libglapi-mesa:s390x. 1197s Preparing to unpack .../039-libglapi-mesa_24.0.9-0ubuntu2_s390x.deb ... 1197s Unpacking libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 1197s Selecting previously unselected package libllvm17t64:s390x. 1197s Preparing to unpack .../040-libllvm17t64_1%3a17.0.6-12_s390x.deb ... 1197s Unpacking libllvm17t64:s390x (1:17.0.6-12) ... 1198s Selecting previously unselected package libxcb-dri3-0:s390x. 1198s Preparing to unpack .../041-libxcb-dri3-0_1.17.0-2_s390x.deb ... 1198s Unpacking libxcb-dri3-0:s390x (1.17.0-2) ... 1198s Selecting previously unselected package libgl1-mesa-dri:s390x. 1198s Preparing to unpack .../042-libgl1-mesa-dri_24.0.9-0ubuntu2_s390x.deb ... 1198s Unpacking libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 1198s Selecting previously unselected package libglvnd0:s390x. 1198s Preparing to unpack .../043-libglvnd0_1.7.0-1build1_s390x.deb ... 1198s Unpacking libglvnd0:s390x (1.7.0-1build1) ... 1198s Selecting previously unselected package libx11-xcb1:s390x. 1198s Preparing to unpack .../044-libx11-xcb1_2%3a1.8.7-1build1_s390x.deb ... 1198s Unpacking libx11-xcb1:s390x (2:1.8.7-1build1) ... 1198s Selecting previously unselected package libxcb-dri2-0:s390x. 1198s Preparing to unpack .../045-libxcb-dri2-0_1.17.0-2_s390x.deb ... 1198s Unpacking libxcb-dri2-0:s390x (1.17.0-2) ... 1198s Selecting previously unselected package libxcb-glx0:s390x. 1198s Preparing to unpack .../046-libxcb-glx0_1.17.0-2_s390x.deb ... 1198s Unpacking libxcb-glx0:s390x (1.17.0-2) ... 1198s Selecting previously unselected package libxcb-present0:s390x. 1198s Preparing to unpack .../047-libxcb-present0_1.17.0-2_s390x.deb ... 1198s Unpacking libxcb-present0:s390x (1.17.0-2) ... 1198s Selecting previously unselected package libxcb-randr0:s390x. 1198s Preparing to unpack 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1198s Unpacking libglew2.2:s390x (2.2.0-4build1) ... 1198s Selecting previously unselected package libsz2:s390x. 1198s Preparing to unpack .../059-libsz2_1.1.3-1_s390x.deb ... 1198s Unpacking libsz2:s390x (1.1.3-1) ... 1198s Selecting previously unselected package libhdf5-103-1t64:s390x. 1198s Preparing to unpack .../060-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 1198s Unpacking libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 1198s Selecting previously unselected package libhdf5-hl-100t64:s390x. 1198s Preparing to unpack .../061-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_s390x.deb ... 1198s Unpacking libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 1198s Selecting previously unselected package libhwloc15:s390x. 1198s Preparing to unpack .../062-libhwloc15_2.10.0-1build1_s390x.deb ... 1198s Unpacking libhwloc15:s390x (2.10.0-1build1) ... 1198s Selecting previously unselected package libjs-jquery. 1198s Preparing to unpack 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libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 1199s Selecting previously unselected package libtbbbind-2-5:s390x. 1199s Preparing to unpack .../084-libtbbbind-2-5_2021.11.0-2ubuntu2_s390x.deb ... 1199s Unpacking libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 1199s Selecting previously unselected package libtbb12:s390x. 1199s Preparing to unpack .../085-libtbb12_2021.11.0-2ubuntu2_s390x.deb ... 1199s Unpacking libtbb12:s390x (2021.11.0-2ubuntu2) ... 1199s Selecting previously unselected package libtcl8.6:s390x. 1199s Preparing to unpack .../086-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 1199s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 1199s Selecting previously unselected package libtheora0:s390x. 1199s Preparing to unpack .../087-libtheora0_1.1.1+dfsg.1-16.1build3_s390x.deb ... 1199s Unpacking libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 1199s Selecting previously unselected package libxft2:s390x. 1199s Preparing to unpack .../088-libxft2_2.3.6-1build1_s390x.deb ... 1199s Unpacking libxft2:s390x (2.3.6-1build1) ... 1199s Selecting previously unselected package x11-common. 1199s Preparing to unpack .../089-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1199s Unpacking x11-common (1:7.7+23ubuntu3) ... 1199s Selecting previously unselected package libxss1:s390x. 1199s Preparing to unpack .../090-libxss1_1%3a1.2.3-1build3_s390x.deb ... 1199s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 1199s Selecting previously unselected package libtk8.6:s390x. 1199s Preparing to unpack .../091-libtk8.6_8.6.14-1build1_s390x.deb ... 1199s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 1199s Selecting previously unselected package libvtk9.3:s390x. 1199s Preparing to unpack .../092-libvtk9.3_9.3.0+dfsg1-1_s390x.deb ... 1199s Unpacking libvtk9.3:s390x (9.3.0+dfsg1-1) ... 1200s Selecting previously unselected package liblammps0t64:s390x. 1200s Preparing to unpack .../093-liblammps0t64_20240207+dfsg-1.1build4_s390x.deb ... 1200s Unpacking liblammps0t64:s390x (20240207+dfsg-1.1build4) ... 1200s Selecting previously unselected package openmpi-common. 1200s Preparing to unpack .../094-openmpi-common_4.1.6-7ubuntu2_all.deb ... 1200s Unpacking openmpi-common (4.1.6-7ubuntu2) ... 1201s Selecting previously unselected package libnl-3-dev:s390x. 1201s Preparing to unpack .../095-libnl-3-dev_3.7.0-0.3build1_s390x.deb ... 1201s Unpacking libnl-3-dev:s390x (3.7.0-0.3build1) ... 1201s Selecting previously unselected package libnl-route-3-dev:s390x. 1201s Preparing to unpack .../096-libnl-route-3-dev_3.7.0-0.3build1_s390x.deb ... 1201s Unpacking libnl-route-3-dev:s390x (3.7.0-0.3build1) ... 1201s Selecting previously unselected package libibverbs-dev:s390x. 1201s Preparing to unpack .../097-libibverbs-dev_52.0-2_s390x.deb ... 1201s Unpacking libibverbs-dev:s390x (52.0-2) ... 1201s Selecting previously unselected package libnuma-dev:s390x. 1201s Preparing to unpack .../098-libnuma-dev_2.0.18-1build1_s390x.deb ... 1201s Unpacking libnuma-dev:s390x (2.0.18-1build1) ... 1201s Selecting previously unselected package libltdl7:s390x. 1201s Preparing to unpack .../099-libltdl7_2.4.7-7build1_s390x.deb ... 1201s Unpacking libltdl7:s390x (2.4.7-7build1) ... 1201s Selecting previously unselected package libltdl-dev:s390x. 1201s Preparing to unpack .../100-libltdl-dev_2.4.7-7build1_s390x.deb ... 1201s Unpacking libltdl-dev:s390x (2.4.7-7build1) ... 1201s Selecting previously unselected package libhwloc-dev:s390x. 1201s Preparing to unpack .../101-libhwloc-dev_2.10.0-1build1_s390x.deb ... 1201s Unpacking libhwloc-dev:s390x (2.10.0-1build1) ... 1201s Selecting previously unselected package zlib1g-dev:s390x. 1201s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ... 1201s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 1201s Selecting previously unselected package libpmix-dev:s390x. 1201s Preparing to unpack .../103-libpmix-dev_5.0.1-4.1build1_s390x.deb ... 1201s Unpacking libpmix-dev:s390x (5.0.1-4.1build1) ... 1201s Selecting previously unselected package openmpi-bin. 1201s Preparing to unpack .../104-openmpi-bin_4.1.6-7ubuntu2_s390x.deb ... 1201s Unpacking openmpi-bin (4.1.6-7ubuntu2) ... 1201s Selecting previously unselected package libopenmpi-dev:s390x. 1201s Preparing to unpack .../105-libopenmpi-dev_4.1.6-7ubuntu2_s390x.deb ... 1201s Unpacking libopenmpi-dev:s390x (4.1.6-7ubuntu2) ... 1201s Selecting previously unselected package mpi-default-dev. 1201s Preparing to unpack .../106-mpi-default-dev_1.17_s390x.deb ... 1201s Unpacking mpi-default-dev (1.17) ... 1201s Selecting previously unselected package liblammps-dev. 1201s Preparing to unpack .../107-liblammps-dev_20240207+dfsg-1.1build4_s390x.deb ... 1201s Unpacking liblammps-dev (20240207+dfsg-1.1build4) ... 1201s Selecting previously unselected package mpi-default-bin. 1201s Preparing to unpack .../108-mpi-default-bin_1.17_s390x.deb ... 1201s Unpacking mpi-default-bin (1.17) ... 1201s Selecting previously unselected package python3-lammps. 1201s Preparing to unpack .../109-python3-lammps_20240207+dfsg-1.1build4_s390x.deb ... 1201s Unpacking python3-lammps (20240207+dfsg-1.1build4) ... 1201s Selecting previously unselected package autopkgtest-satdep. 1201s Preparing to unpack .../110-7-autopkgtest-satdep.deb ... 1201s Unpacking autopkgtest-satdep (0) ... 1201s Setting up libxcb-dri3-0:s390x (1.17.0-2) ... 1201s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 1201s Setting up libpixman-1-0:s390x (0.42.2-1build1) ... 1201s Setting up libx11-xcb1:s390x (2:1.8.7-1build1) ... 1201s Setting up libpciaccess0:s390x (0.17-3build1) ... 1201s Setting up libdouble-conversion3:s390x (3.3.0-1build1) ... 1201s Setting up libdrm-nouveau2:s390x (2.4.121-2) ... 1201s Setting up libxcb-xfixes0:s390x (1.17.0-2) ... 1201s Setting up libogg0:s390x (1.3.5-3build1) ... 1201s Setting up proj-data (9.4.1-1) ... 1201s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 1201s Setting up libproj25:s390x (9.4.1-1) ... 1201s Setting up libxcb-render0:s390x (1.17.0-2) ... 1201s Setting up libevent-pthreads-2.1-7t64:s390x (2.1.12-stable-10) ... 1201s Setting up libdrm-radeon1:s390x (2.4.121-2) ... 1201s Setting up libglvnd0:s390x (1.7.0-1build1) ... 1201s Setting up libxcb-glx0:s390x (1.17.0-2) ... 1201s Setting up libevent-openssl-2.1-7t64:s390x (2.1.12-stable-10) ... 1201s Setting up x11-common (1:7.7+23ubuntu3) ... 1202s Setting up m4 (1.4.19-4build1) ... 1202s Setting up libevent-2.1-7t64:s390x (2.1.12-stable-10) ... 1202s Setting up libxcb-shm0:s390x (1.17.0-2) ... 1202s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libcairo2:s390x (1.18.0-3build1) ... 1202s Setting up libaec0:s390x (1.1.3-1) ... 1202s Setting up libopengl0:s390x (1.7.0-1build1) ... 1202s Setting up libxxf86vm1:s390x (1:1.1.4-1build4) ... 1202s Setting up libnuma-dev:s390x (2.0.18-1build1) ... 1202s Setting up gcc-12-base:s390x (12.4.0-1ubuntu1) ... 1202s Setting up libxnvctrl0:s390x (510.47.03-0ubuntu4) ... 1202s Setting up libxcb-present0:s390x (1.17.0-2) ... 1202s Setting up libpython3.12t64:s390x (3.12.4-1ubuntu1) ... 1202s Setting up autotools-dev (20220109.1) ... 1202s Setting up libblas3:s390x (3.12.0-3build1) ... 1202s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 1202s Setting up libmunge2:s390x (0.5.15-4build1) ... 1202s Setting up libllvm17t64:s390x (1:17.0.6-12) ... 1202s Setting up libxfixes3:s390x (1:6.0.0-2build1) ... 1202s Setting up libxcb-sync1:s390x (1.17.0-2) ... 1202s Setting up libhwloc15:s390x (2.10.0-1build1) ... 1202s Setting up libmpc3:s390x (1.3.1-1build1) ... 1202s Setting up libatomic1:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 1202s Setting up libjsoncpp25:s390x (1.9.5-6build1) ... 1202s Setting up libltdl7:s390x (2.4.7-7build1) ... 1202s Setting up libfftw3-double3:s390x (3.3.10-1ubuntu3) ... 1202s Setting up libglapi-mesa:s390x (24.0.9-0ubuntu2) ... 1202s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libvulkan1:s390x (1.3.283.0-1) ... 1202s Setting up autoconf (2.71-3) ... 1202s Setting up libevent-extra-2.1-7t64:s390x (2.1.12-stable-10) ... 1202s Setting up libubsan1:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libxcb-dri2-0:s390x (1.17.0-2) ... 1202s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ... 1202s Setting up libnl-3-dev:s390x (3.7.0-0.3build1) ... 1202s Setting up ocl-icd-libopencl1:s390x (2.3.2-1build1) ... 1202s Setting up libxshmfence1:s390x (1.3-1build5) ... 1202s Setting up libxcb-randr0:s390x (1.17.0-2) ... 1202s Setting up libasan8:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libtheora0:s390x (1.1.1+dfsg.1-16.1build3) ... 1202s Setting up openmpi-common (4.1.6-7ubuntu2) ... 1202s Setting up librdmacm1t64:s390x (52.0-2) ... 1202s Setting up libxss1:s390x (1:1.2.3-1build3) ... 1202s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1202s Setting up libisl23:s390x (0.26-3build1) ... 1202s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 1202s Setting up libcc1-0:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libsz2:s390x (1.1.3-1) ... 1202s Setting up libitm1:s390x (14.1.0-1ubuntu1) ... 1202s Setting up libdrm-amdgpu1:s390x (2.4.121-2) ... 1202s Setting up automake (1:1.16.5-1.3ubuntu1) ... 1202s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 1202s Setting up libfabric1:s390x (1.17.0-3build2) ... 1202s Setting up liblapack3:s390x (3.12.0-3build1) ... 1202s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 1202s Setting up libxft2:s390x (2.3.6-1build1) ... 1202s Setting up cpp-12 (12.4.0-1ubuntu1) ... 1202s Setting up libtk8.6:s390x (8.6.14-1build1) ... 1202s Setting up libgl1-mesa-dri:s390x (24.0.9-0ubuntu2) ... 1202s Setting up libhwloc-plugins:s390x (2.10.0-1build1) ... 1202s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 1202s Setting up libnl-route-3-dev:s390x (3.7.0-0.3build1) ... 1202s Setting up libltdl-dev:s390x (2.4.7-7build1) ... 1202s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1202s Setting up libgcc-12-dev:s390x (12.4.0-1ubuntu1) ... 1202s Setting up libevent-dev (2.1.12-stable-10) ... 1202s Setting up libpmix2t64:s390x (5.0.1-4.1build1) ... 1202s Setting up libopenmpi3t64:s390x (4.1.6-7ubuntu2) ... 1202s Setting up libpnetcdf0d:s390x (1.13.0-1) ... 1202s Setting up libhwloc-dev:s390x (2.10.0-1build1) ... 1202s Setting up libhdf5-103-1t64:s390x (1.10.10+repack-3.1ubuntu4) ... 1202s Setting up libpmix-dev:s390x (5.0.1-4.1build1) ... 1202s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 1202s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1202s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1202s Setting up libhdf5-hl-100t64:s390x (1.10.10+repack-3.1ubuntu4) ... 1202s Setting up libnetcdf19t64:s390x (1:4.9.2-6) ... 1202s Setting up libglx-mesa0:s390x (24.0.9-0ubuntu2) ... 1202s Setting up libglx0:s390x (1.7.0-1build1) ... 1202s Setting up mpi-default-bin (1.17) ... 1202s Setting up libgfortran-12-dev:s390x (12.4.0-1ubuntu1) ... 1202s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 1202s Setting up libibverbs-dev:s390x (52.0-2) ... 1202s Setting up libgl1:s390x (1.7.0-1build1) ... 1202s Setting up gcc-12 (12.4.0-1ubuntu1) ... 1202s Setting up libglew2.2:s390x (2.2.0-4build1) ... 1202s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 1202s Setting up gfortran-12 (12.4.0-1ubuntu1) ... 1202s Setting up libvtk9.3:s390x (9.3.0+dfsg1-1) ... 1202s Setting up libopenmpi-dev:s390x (4.1.6-7ubuntu2) ... 1202s update-alternatives: using /usr/lib/s390x-linux-gnu/openmpi/include to provide /usr/include/s390x-linux-gnu/mpi (mpi-s390x-linux-gnu) in auto mode 1202s Setting up libkim-api2:s390x (2.3.0-1) ... 1202s Setting up liblammps0t64:s390x (20240207+dfsg-1.1build4) ... 1202s Setting up mpi-default-dev (1.17) ... 1202s Setting up liblammps-dev (20240207+dfsg-1.1build4) ... 1202s Setting up python3-lammps (20240207+dfsg-1.1build4) ... 1202s Setting up autopkgtest-satdep (0) ... 1202s Processing triggers for man-db (2.12.1-2) ... 1202s Processing triggers for install-info (7.1-3build2) ... 1202s Processing triggers for libc-bin (2.39-0ubuntu9) ... 1206s (Reading database ... 59899 files and directories currently installed.) 1206s Removing autopkgtest-satdep (0) ... 1255s autopkgtest [17:21:08]: test command1: cd python/examples; python3 demo.py 1255s autopkgtest [17:21:08]: test command1: [----------------------- 1255s LAMMPS (7 Feb 2024 - Update 1) 1256s 1256s Python output: 1256s Natoms, mass, x[0][0] coord = 4000 1.0 0.2727243714666721 1256s Temperature from compute = 0.750609109548371 1256s Energy from equal-style variable = -5.748192616533703 1256s Velocity component from atom-style variable = -0.008231833025308041 1256s Volume from get_thermo = 4738.213693437576 1256s Natoms from get_natoms = 4000 1256s Global coords from gather_atoms = 0.2727243714666721 0.1442606170751015 0.02741951954247279 1256s Changed x[0][0] via scatter_atoms = 1.272724371466672 1256s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1256s using 1 OpenMP thread(s) per MPI task 1256s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 1256s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1256s 1 by 1 by 1 MPI processor grid 1256s Created 4000 atoms 1256s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1256s create_atoms CPU = 0.001 seconds 1256s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1256s Neighbor list info ... 1256s update: every = 20 steps, delay = 0 steps, check = no 1256s max neighbors/atom: 2000, page size: 100000 1256s master list distance cutoff = 2.8 1256s ghost atom cutoff = 2.8 1256s binsize = 1.4, bins = 12 12 12 1256s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1256s (1) pair lj/cut, perpetual 1256s attributes: half, newton on 1256s pair build: half/bin/atomonly/newton 1256s stencil: half/bin/3d 1256s bin: standard 1256s Setting up Verlet run ... 1256s Unit style : lj 1256s Current step : 0 1256s Time step : 0.005 1256s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 1256s Step Temp E_pair E_mol TotEng Press 1256s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 1256s 100 0.75060911 -5.7481926 0 -4.6225604 0.24772341 1256s Loop time of 0.41837 on 1 procs for 100 steps with 4000 atoms 1256s 1256s Performance: 103257.919 tau/day, 239.023 timesteps/s, 956.092 katom-step/s 1256s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 1256s 1256s MPI task timing breakdown: 1256s Section | min time | avg time | max time |%varavg| %total 1256s --------------------------------------------------------------- 1256s Pair | 0.37281 | 0.37281 | 0.37281 | 0.0 | 89.11 1256s Neigh | 0.036271 | 0.036271 | 0.036271 | 0.0 | 8.67 1256s Comm | 0.0043615 | 0.0043615 | 0.0043615 | 0.0 | 1.04 1256s Output | 2.9813e-05 | 2.9813e-05 | 2.9813e-05 | 0.0 | 0.01 1256s Modify | 0.0040215 | 0.0040215 | 0.0040215 | 0.0 | 0.96 1256s Other | | 0.0008731 | | | 0.21 1256s 1256s Nlocal: 4000 ave 4000 max 4000 min 1256s Histogram: 1 0 0 0 0 0 0 0 0 0 1256s Nghost: 5770 ave 5770 max 5770 min 1256s Histogram: 1 0 0 0 0 0 0 0 0 0 1256s Neighs: 150293 ave 150293 max 150293 min 1256s Histogram: 1 0 0 0 0 0 0 0 0 0 1256s 1256s Total # of neighbors = 150293 1256s Ave neighs/atom = 37.57325 1256s Neighbor list builds = 5 1256s Dangerous builds not checked 1256s Total wall time: 0:00:00 1256s autopkgtest [17:21:09]: test command1: -----------------------] 1256s autopkgtest [17:21:09]: test command1: - - - - - - - - - - results - - - - - - - - - - 1256s command1 PASS 1257s autopkgtest [17:21:10]: @@@@@@@@@@@@@@@@@@@@ summary 1257s crack PASS 1257s dipole PASS 1257s ellipse PASS 1257s flow PASS 1257s friction PASS 1257s hugo PASS 1257s command1 PASS 1270s nova [W] Using flock in scalingstack-bos02-s390x 1270s Creating nova instance adt-oracular-s390x-lammps-20240708-170013-juju-7f2275-prod-proposed-migration-environment-2-ddcd1b58-45d8-4405-a643-1a3a6a5edaf1 from image adt/ubuntu-oracular-s390x-server-20240708.img (UUID 6c20d52a-e434-4209-aeee-6cc89c5ba4cf)... 1270s nova [W] Using flock in scalingstack-bos02-s390x 1270s Creating nova instance adt-oracular-s390x-lammps-20240708-170013-juju-7f2275-prod-proposed-migration-environment-2-ddcd1b58-45d8-4405-a643-1a3a6a5edaf1 from image adt/ubuntu-oracular-s390x-server-20240708.img (UUID 6c20d52a-e434-4209-aeee-6cc89c5ba4cf)...