0s autopkgtest [01:12:48]: starting date and time: 2024-06-08 01:12:48+0000 0s autopkgtest [01:12:48]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [01:12:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.oe2j6pue/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-17.secgroup --name adt-oracular-s390x-gudhi-20240608-011248-juju-7f2275-prod-proposed-migration-environment-2-f1984c67-3a84-45b8-94b9-d0326d5ebdd7 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 66s autopkgtest [01:13:54]: testbed dpkg architecture: s390x 66s autopkgtest [01:13:54]: testbed apt version: 2.9.3 66s autopkgtest [01:13:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 68s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 68s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2864 B] 68s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 68s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 68s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [47.8 kB] 68s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1860 B] 68s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [264 kB] 68s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1768 B] 68s Fetched 820 kB in 1s (944 kB/s) 68s Reading package lists... 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade... 71s The following packages will be upgraded: 71s cron cron-daemon-common debianutils libaom3 libheif-plugin-aomdec 71s libheif-plugin-aomenc libheif-plugin-libde265 libheif1 libnetplan1 71s liburcu8t64 netplan-generator netplan.io python3-netplan 71s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 71s Need to get 2321 kB of archives. 71s After this operation, 45.1 kB disk space will be freed. 71s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x debianutils s390x 5.18 [90.2 kB] 71s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x cron s390x 3.0pl1-189ubuntu1 [88.4 kB] 71s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x netplan-generator s390x 1.0-3ubuntu1 [59.2 kB] 71s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x python3-netplan s390x 1.0-3ubuntu1 [22.9 kB] 71s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x netplan.io s390x 1.0-3ubuntu1 [65.8 kB] 71s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libnetplan1 s390x 1.0-3ubuntu1 [125 kB] 71s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x cron-daemon-common all 3.0pl1-189ubuntu1 [14.2 kB] 71s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x libaom3 s390x 3.8.2-3 [1461 kB] 72s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomdec s390x 1.17.6-3 [10.1 kB] 72s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-aomenc s390x 1.17.6-3 [15.1 kB] 72s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libheif1 s390x 1.17.6-3 [295 kB] 72s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libheif-plugin-libde265 s390x 1.17.6-3 [8172 B] 72s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x liburcu8t64 s390x 0.14.0-4 [66.5 kB] 72s Fetched 2321 kB in 1s (3704 kB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 72s Preparing to unpack .../debianutils_5.18_s390x.deb ... 72s Unpacking debianutils (5.18) over (5.17build1) ... 72s Setting up debianutils (5.18) ... 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 72s Preparing to unpack .../00-cron_3.0pl1-189ubuntu1_s390x.deb ... 72s Unpacking cron (3.0pl1-189ubuntu1) over (3.0pl1-184ubuntu2) ... 72s Preparing to unpack .../01-netplan-generator_1.0-3ubuntu1_s390x.deb ... 72s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 72s Unpacking netplan-generator (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 72s Preparing to unpack .../02-python3-netplan_1.0-3ubuntu1_s390x.deb ... 72s Unpacking python3-netplan (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 72s Preparing to unpack .../03-netplan.io_1.0-3ubuntu1_s390x.deb ... 72s Unpacking netplan.io (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 72s Preparing to unpack .../04-libnetplan1_1.0-3ubuntu1_s390x.deb ... 72s Unpacking libnetplan1:s390x (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 72s Preparing to unpack .../05-cron-daemon-common_3.0pl1-189ubuntu1_all.deb ... 72s Unpacking cron-daemon-common (3.0pl1-189ubuntu1) over (3.0pl1-184ubuntu2) ... 72s Preparing to unpack .../06-libaom3_3.8.2-3_s390x.deb ... 72s Unpacking libaom3:s390x (3.8.2-3) over (3.8.2-2ubuntu1) ... 72s Preparing to unpack .../07-libheif-plugin-aomdec_1.17.6-3_s390x.deb ... 72s Unpacking libheif-plugin-aomdec:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 72s Preparing to unpack .../08-libheif-plugin-aomenc_1.17.6-3_s390x.deb ... 72s Unpacking libheif-plugin-aomenc:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 72s Preparing to unpack .../09-libheif1_1.17.6-3_s390x.deb ... 72s Unpacking libheif1:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 72s Preparing to unpack .../10-libheif-plugin-libde265_1.17.6-3_s390x.deb ... 72s Unpacking libheif-plugin-libde265:s390x (1.17.6-3) over (1.17.6-1ubuntu4) ... 72s Preparing to unpack .../11-liburcu8t64_0.14.0-4_s390x.deb ... 72s Unpacking liburcu8t64:s390x (0.14.0-4) over (0.14.0-3.1build1) ... 72s Setting up liburcu8t64:s390x (0.14.0-4) ... 72s Setting up libaom3:s390x (3.8.2-3) ... 72s Setting up libnetplan1:s390x (1.0-3ubuntu1) ... 72s Setting up python3-netplan (1.0-3ubuntu1) ... 72s Setting up netplan-generator (1.0-3ubuntu1) ... 72s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 72s Setting up cron-daemon-common (3.0pl1-189ubuntu1) ... 72s Setting up cron (3.0pl1-189ubuntu1) ... 73s Setting up netplan.io (1.0-3ubuntu1) ... 73s Setting up libheif-plugin-aomdec:s390x (1.17.6-3) ... 73s Setting up libheif-plugin-libde265:s390x (1.17.6-3) ... 73s Setting up libheif1:s390x (1.17.6-3) ... 73s Setting up libheif-plugin-aomenc:s390x (1.17.6-3) ... 73s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 73s Processing triggers for man-db (2.12.1-1) ... 74s Processing triggers for dbus (1.14.10-4ubuntu4) ... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 76s Reading package lists... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s Calculating upgrade... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 77s autopkgtest [01:14:05]: rebooting testbed after setup commands that affected boot 81s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 104s autopkgtest [01:14:32]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 106s autopkgtest [01:14:34]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 111s Get:1 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (dsc) [3361 B] 111s Get:2 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (tar) [17.7 MB] 111s Get:3 http://ftpmaster.internal/ubuntu oracular/universe gudhi 3.9.0+dfsg-1build3 (diff) [11.4 kB] 112s gpgv: Signature made Fri Apr 12 05:22:35 2024 UTC 112s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 112s gpgv: issuer "steve.langasek@ubuntu.com" 112s gpgv: Can't check signature: No public key 112s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.9.0+dfsg-1build3.dsc: no acceptable signature found 114s autopkgtest [01:14:42]: testing package gudhi version 3.9.0+dfsg-1build3 114s autopkgtest [01:14:42]: build not needed 214s autopkgtest [01:16:22]: test python-upstream.sh: preparing testbed 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 215s Starting pkgProblemResolver with broken count: 0 215s Starting 2 pkgProblemResolver with broken count: 0 215s Done 215s The following additional packages will be installed: 215s blt fonts-lyx libblas3 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 215s libhwloc15 libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 215s liblcms2-2 libopenjp2-7 libqhull-r8.0 libraqm0 libtbb12 libtbbbind-2-5 215s libtbbmalloc2 libtcl8.6 libtk8.6 libwebpdemux2 libwebpmux3 libxft2 215s libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 215s python3-appdirs python3-brotli python3-contourpy python3-cycler 215s python3-dateutil python3-decorator python3-eagerpy python3-fonttools 215s python3-fs python3-gudhi python3-iniconfig python3-joblib python3-kiwisolver 215s python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy 215s python3-packaging python3-pil python3-pil.imagetk python3-pluggy python3-pot 215s python3-pytest python3-scipy python3-sklearn python3-sklearn-lib 215s python3-sympy python3-threadpoolctl python3-tk python3-tz python3-ufolib2 215s tk8.6-blt2.5 unicode-data x11-common 215s Suggested packages: 215s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 215s python3-torch python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft 215s ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 215s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 215s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 215s python3-gmpy2 gcc gfortran python-numpy-doc python3-dev python-pil-doc 215s python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra 215s python-sympy-doc tix python3-tk-dbg 215s Recommended packages: 215s libhwloc-plugins javascript-common python3-simplejson python3-psutil 215s python3-bs4 python3-cssselect python3-html5lib python3-olefile g++ 215s | c++-compiler isympy-common 215s The following NEW packages will be installed: 215s autopkgtest-satdep blt fonts-lyx libblas3 libgfortran5 libgomp1 215s libgraphite2-3 libharfbuzz0b libhwloc15 libimagequant0 libjs-jquery 215s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libopenjp2-7 libqhull-r8.0 215s libraqm0 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtk8.6 215s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 215s python-matplotlib-data python3-all python3-appdirs python3-brotli 215s python3-contourpy python3-cycler python3-dateutil python3-decorator 215s python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig 215s python3-joblib python3-kiwisolver python3-lxml python3-lz4 215s python3-matplotlib python3-mpmath python3-numpy python3-packaging 215s python3-pil python3-pil.imagetk python3-pluggy python3-pot python3-pytest 215s python3-scipy python3-sklearn python3-sklearn-lib python3-sympy 215s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 tk8.6-blt2.5 215s unicode-data x11-common 215s 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. 215s Need to get 64.8 MB/64.8 MB of archives. 215s After this operation, 276 MB of additional disk space will be used. 215s Get:1 /tmp/autopkgtest.chuGoR/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [756 B] 216s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libtcl8.6 s390x 8.6.14+dfsg-1build1 [1038 kB] 216s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 216s Get:4 http://ftpmaster.internal/ubuntu oracular/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 216s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 216s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 216s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libtk8.6 s390x 8.6.14-1build1 [833 kB] 216s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x tk8.6-blt2.5 s390x 2.5.3+dfsg-7build1 [662 kB] 216s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x blt s390x 2.5.3+dfsg-7build1 [4840 B] 216s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x fonts-lyx all 2.4.0-1 [171 kB] 216s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 216s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 216s Get:13 http://ftpmaster.internal/ubuntu oracular/main s390x libgomp1 s390x 14.1.0-1ubuntu1 [151 kB] 216s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x libgraphite2-3 s390x 1.3.14-2build1 [80.0 kB] 216s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x libharfbuzz0b s390x 8.3.0-2build2 [515 kB] 216s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x libhwloc15 s390x 2.10.0-1build1 [177 kB] 216s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB] 216s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 216s Get:19 http://ftpmaster.internal/ubuntu oracular/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 216s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 216s Get:21 http://ftpmaster.internal/ubuntu oracular/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB] 216s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x liblcms2-2 s390x 2.14-2build1 [172 kB] 216s Get:23 http://ftpmaster.internal/ubuntu oracular/universe s390x libqhull-r8.0 s390x 2020.2-6build1 [199 kB] 216s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB] 216s Get:25 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbmalloc2 s390x 2021.11.0-2ubuntu2 [68.0 kB] 216s Get:26 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbbbind-2-5 s390x 2021.11.0-2ubuntu2 [16.7 kB] 216s Get:27 http://ftpmaster.internal/ubuntu oracular/universe s390x libtbb12 s390x 2021.11.0-2ubuntu2 [118 kB] 216s Get:28 http://ftpmaster.internal/ubuntu oracular/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB] 217s Get:29 http://ftpmaster.internal/ubuntu oracular/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB] 217s Get:30 http://ftpmaster.internal/ubuntu oracular/main s390x libxslt1.1 s390x 1.1.39-0exp1build1 [170 kB] 217s Get:31 http://ftpmaster.internal/ubuntu oracular/universe s390x python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 217s Get:32 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B] 217s Get:33 http://ftpmaster.internal/ubuntu oracular/main s390x python3-appdirs all 1.4.4-4 [10.9 kB] 217s Get:34 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-brotli s390x 1.1.0-2build2 [376 kB] 217s Get:35 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 217s Get:36 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-contourpy s390x 1.0.7-3 [180 kB] 217s Get:37 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-cycler all 0.12.1-1 [9716 B] 217s Get:38 http://ftpmaster.internal/ubuntu oracular/main s390x python3-dateutil all 2.9.0-2 [80.3 kB] 217s Get:39 http://ftpmaster.internal/ubuntu oracular/main s390x python3-decorator all 5.1.1-5 [10.1 kB] 217s Get:40 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-eagerpy all 0.30.0-3 [19.0 kB] 217s Get:41 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-scipy s390x 1.11.4-10 [16.2 MB] 217s Get:42 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 217s Get:43 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-mpmath all 1.3.0-1 [425 kB] 217s Get:44 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sympy all 1.12-8 [3966 kB] 217s Get:45 http://ftpmaster.internal/ubuntu oracular/main s390x python3-tz all 2024.1-2 [31.4 kB] 217s Get:46 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-fs all 2.4.16-4 [91.3 kB] 217s Get:47 http://ftpmaster.internal/ubuntu oracular/main s390x python3-lxml s390x 5.2.1-1 [1300 kB] 217s Get:48 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-lz4 s390x 4.0.2+dfsg-1build4 [26.4 kB] 217s Get:49 http://ftpmaster.internal/ubuntu oracular/universe s390x unicode-data all 15.1.0-1 [8878 kB] 218s Get:50 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-fonttools s390x 4.46.0-1build2 [1453 kB] 218s Get:51 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-gudhi s390x 3.9.0+dfsg-1build3 [1737 kB] 218s Get:52 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 218s Get:53 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-joblib all 1.3.2-2 [208 kB] 218s Get:54 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-kiwisolver s390x 1.4.5-1 [52.6 kB] 218s Get:55 http://ftpmaster.internal/ubuntu oracular/main s390x libopenjp2-7 s390x 2.5.0-2build3 [192 kB] 218s Get:56 http://ftpmaster.internal/ubuntu oracular/main s390x python3-pil s390x 10.3.0-2 [488 kB] 218s Get:57 http://ftpmaster.internal/ubuntu oracular/main s390x python3-tk s390x 3.12.3-0ubuntu1 [104 kB] 218s Get:58 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pil.imagetk s390x 10.3.0-2 [9114 B] 218s Get:59 http://ftpmaster.internal/ubuntu oracular/main s390x python3-packaging all 24.0-1 [41.1 kB] 218s Get:60 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-matplotlib s390x 3.6.3-2ubuntu1 [6022 kB] 218s Get:61 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 218s Get:62 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pot s390x 0.9.3+dfsg-2 [221 kB] 218s Get:63 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x python3-pytest all 8.2.2-1ubuntu1 [250 kB] 218s Get:64 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-threadpoolctl all 3.1.0-1 [21.3 kB] 218s Get:65 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn-lib s390x 1.4.2+dfsg-1 [3984 kB] 218s Get:66 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 218s Fetched 64.8 MB in 3s (25.8 MB/s) 218s Selecting previously unselected package libtcl8.6:s390x. 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54607 files and directories currently installed.) 218s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_s390x.deb ... 218s Unpacking libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 218s Selecting previously unselected package libxrender1:s390x. 218s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 218s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 218s Selecting previously unselected package libxft2:s390x. 219s Preparing to unpack .../02-libxft2_2.3.6-1build1_s390x.deb ... 219s Unpacking libxft2:s390x (2.3.6-1build1) ... 219s Selecting previously unselected package x11-common. 219s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 219s Unpacking x11-common (1:7.7+23ubuntu3) ... 219s Selecting previously unselected package libxss1:s390x. 219s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_s390x.deb ... 219s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 219s Selecting previously unselected package libtk8.6:s390x. 219s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_s390x.deb ... 219s Unpacking libtk8.6:s390x (8.6.14-1build1) ... 219s Selecting previously unselected package tk8.6-blt2.5. 219s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_s390x.deb ... 219s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 219s Selecting previously unselected package blt. 219s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_s390x.deb ... 219s Unpacking blt (2.5.3+dfsg-7build1) ... 219s Selecting previously unselected package fonts-lyx. 219s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 219s Unpacking fonts-lyx (2.4.0-1) ... 219s Selecting previously unselected package libblas3:s390x. 219s Preparing to unpack .../09-libblas3_3.12.0-3build1_s390x.deb ... 219s Unpacking libblas3:s390x (3.12.0-3build1) ... 219s Selecting previously unselected package libgfortran5:s390x. 219s Preparing to unpack .../10-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 219s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 219s Selecting previously unselected package libgomp1:s390x. 219s Preparing to unpack .../11-libgomp1_14.1.0-1ubuntu1_s390x.deb ... 219s Unpacking libgomp1:s390x (14.1.0-1ubuntu1) ... 219s Selecting previously unselected package libgraphite2-3:s390x. 219s Preparing to unpack .../12-libgraphite2-3_1.3.14-2build1_s390x.deb ... 219s Unpacking libgraphite2-3:s390x (1.3.14-2build1) ... 219s Selecting previously unselected package libharfbuzz0b:s390x. 219s Preparing to unpack .../13-libharfbuzz0b_8.3.0-2build2_s390x.deb ... 219s Unpacking libharfbuzz0b:s390x (8.3.0-2build2) ... 219s Selecting previously unselected package libhwloc15:s390x. 219s Preparing to unpack .../14-libhwloc15_2.10.0-1build1_s390x.deb ... 219s Unpacking libhwloc15:s390x (2.10.0-1build1) ... 219s Selecting previously unselected package libimagequant0:s390x. 219s Preparing to unpack .../15-libimagequant0_2.18.0-1build1_s390x.deb ... 219s Unpacking libimagequant0:s390x (2.18.0-1build1) ... 219s Selecting previously unselected package libjs-jquery. 219s Preparing to unpack .../16-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 219s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 219s Selecting previously unselected package libjs-jquery-ui. 219s Preparing to unpack .../17-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 219s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 219s Selecting previously unselected package liblapack3:s390x. 219s Preparing to unpack .../18-liblapack3_3.12.0-3build1_s390x.deb ... 219s Unpacking liblapack3:s390x (3.12.0-3build1) ... 219s Selecting previously unselected package liblbfgsb0:s390x. 219s Preparing to unpack .../19-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ... 219s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 219s Selecting previously unselected package liblcms2-2:s390x. 219s Preparing to unpack .../20-liblcms2-2_2.14-2build1_s390x.deb ... 219s Unpacking liblcms2-2:s390x (2.14-2build1) ... 219s Selecting previously unselected package libqhull-r8.0:s390x. 219s Preparing to unpack .../21-libqhull-r8.0_2020.2-6build1_s390x.deb ... 219s Unpacking libqhull-r8.0:s390x (2020.2-6build1) ... 219s Selecting previously unselected package libraqm0:s390x. 219s Preparing to unpack .../22-libraqm0_0.10.1-1build1_s390x.deb ... 219s Unpacking libraqm0:s390x (0.10.1-1build1) ... 219s Selecting previously unselected package libtbbmalloc2:s390x. 219s Preparing to unpack .../23-libtbbmalloc2_2021.11.0-2ubuntu2_s390x.deb 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(1.1.39-0exp1build1) ... 219s Selecting previously unselected package python-matplotlib-data. 219s Preparing to unpack .../29-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 219s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 219s Selecting previously unselected package python3-all. 219s Preparing to unpack .../30-python3-all_3.12.3-0ubuntu1_s390x.deb ... 219s Unpacking python3-all (3.12.3-0ubuntu1) ... 219s Selecting previously unselected package python3-appdirs. 219s Preparing to unpack .../31-python3-appdirs_1.4.4-4_all.deb ... 219s Unpacking python3-appdirs (1.4.4-4) ... 219s Selecting previously unselected package python3-brotli. 219s Preparing to unpack .../32-python3-brotli_1.1.0-2build2_s390x.deb ... 219s Unpacking python3-brotli (1.1.0-2build2) ... 219s Selecting previously unselected package python3-numpy. 219s Preparing to unpack .../33-python3-numpy_1%3a1.26.4+ds-10_s390x.deb ... 219s Unpacking python3-numpy (1:1.26.4+ds-10) ... 219s Selecting previously unselected package python3-contourpy. 219s Preparing to unpack .../34-python3-contourpy_1.0.7-3_s390x.deb ... 219s Unpacking python3-contourpy (1.0.7-3) ... 219s Selecting previously unselected package python3-cycler. 219s Preparing to unpack .../35-python3-cycler_0.12.1-1_all.deb ... 219s Unpacking python3-cycler (0.12.1-1) ... 219s Selecting previously unselected package python3-dateutil. 219s Preparing to unpack .../36-python3-dateutil_2.9.0-2_all.deb ... 219s Unpacking python3-dateutil (2.9.0-2) ... 219s Selecting previously unselected package python3-decorator. 219s Preparing to unpack .../37-python3-decorator_5.1.1-5_all.deb ... 219s Unpacking python3-decorator (5.1.1-5) ... 219s Selecting previously unselected package python3-eagerpy. 219s Preparing to unpack .../38-python3-eagerpy_0.30.0-3_all.deb ... 219s Unpacking python3-eagerpy (0.30.0-3) ... 220s Selecting previously unselected package python3-scipy. 220s Preparing to unpack .../39-python3-scipy_1.11.4-10_s390x.deb ... 220s Unpacking python3-scipy (1.11.4-10) ... 220s Selecting previously unselected package python3-ufolib2. 220s Preparing to unpack .../40-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 220s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 220s Selecting previously unselected package python3-mpmath. 220s Preparing to unpack .../41-python3-mpmath_1.3.0-1_all.deb ... 220s Unpacking python3-mpmath (1.3.0-1) ... 220s Selecting previously unselected package python3-sympy. 220s Preparing to unpack .../42-python3-sympy_1.12-8_all.deb ... 220s Unpacking python3-sympy (1.12-8) ... 220s Selecting previously unselected package python3-tz. 220s Preparing to unpack .../43-python3-tz_2024.1-2_all.deb ... 220s Unpacking python3-tz (2024.1-2) ... 220s Selecting previously unselected package python3-fs. 220s Preparing to unpack .../44-python3-fs_2.4.16-4_all.deb ... 221s Unpacking python3-fs (2.4.16-4) ... 221s Selecting previously unselected package python3-lxml:s390x. 221s Preparing to unpack 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python3-iniconfig (1.1.1-2) ... 221s Selecting previously unselected package python3-joblib. 221s Preparing to unpack .../51-python3-joblib_1.3.2-2_all.deb ... 221s Unpacking python3-joblib (1.3.2-2) ... 221s Selecting previously unselected package python3-kiwisolver. 221s Preparing to unpack .../52-python3-kiwisolver_1.4.5-1_s390x.deb ... 221s Unpacking python3-kiwisolver (1.4.5-1) ... 221s Selecting previously unselected package libopenjp2-7:s390x. 221s Preparing to unpack .../53-libopenjp2-7_2.5.0-2build3_s390x.deb ... 221s Unpacking libopenjp2-7:s390x (2.5.0-2build3) ... 221s Selecting previously unselected package python3-pil:s390x. 221s Preparing to unpack .../54-python3-pil_10.3.0-2_s390x.deb ... 221s Unpacking python3-pil:s390x (10.3.0-2) ... 221s Selecting previously unselected package python3-tk:s390x. 221s Preparing to unpack .../55-python3-tk_3.12.3-0ubuntu1_s390x.deb ... 221s Unpacking python3-tk:s390x (3.12.3-0ubuntu1) ... 221s Selecting previously unselected package python3-pil.imagetk:s390x. 221s Preparing to unpack .../56-python3-pil.imagetk_10.3.0-2_s390x.deb ... 221s Unpacking python3-pil.imagetk:s390x (10.3.0-2) ... 221s Selecting previously unselected package python3-packaging. 221s Preparing to unpack .../57-python3-packaging_24.0-1_all.deb ... 221s Unpacking python3-packaging (24.0-1) ... 221s Selecting previously unselected package python3-matplotlib. 221s Preparing to unpack .../58-python3-matplotlib_3.6.3-2ubuntu1_s390x.deb ... 221s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 222s Selecting previously unselected package python3-pluggy. 222s Preparing to unpack .../59-python3-pluggy_1.5.0-1_all.deb ... 222s Unpacking python3-pluggy (1.5.0-1) ... 222s Selecting previously unselected package python3-pot. 222s Preparing to unpack .../60-python3-pot_0.9.3+dfsg-2_s390x.deb ... 222s Unpacking python3-pot (0.9.3+dfsg-2) ... 222s Selecting previously unselected package python3-pytest. 222s Preparing to unpack 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(1.1.1-2) ... 222s Setting up libtbbmalloc2:s390x (2021.11.0-2ubuntu2) ... 222s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 222s Setting up python3-joblib (1.3.2-2) ... 223s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 223s Setting up fonts-lyx (2.4.0-1) ... 223s Setting up libwebpdemux2:s390x (1.4.0-0.1) ... 223s Setting up python3-threadpoolctl (3.1.0-1) ... 223s Setting up x11-common (1:7.7+23ubuntu3) ... 223s Setting up libqhull-r8.0:s390x (2020.2-6build1) ... 223s Setting up python3-all (3.12.3-0ubuntu1) ... 223s Setting up libgomp1:s390x (14.1.0-1ubuntu1) ... 223s Setting up python3-tz (2024.1-2) ... 223s Setting up unicode-data (15.1.0-1) ... 223s Setting up python3-decorator (5.1.1-5) ... 224s Setting up libblas3:s390x (3.12.0-3build1) ... 224s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 224s Setting up python3-packaging (24.0-1) ... 224s Setting up python3-brotli (1.1.0-2build2) ... 224s Setting up python3-cycler (0.12.1-1) ... 224s Setting up libimagequant0:s390x (2.18.0-1build1) ... 224s Setting up python3-kiwisolver (1.4.5-1) ... 224s Setting up libhwloc15:s390x (2.10.0-1build1) ... 224s Setting up libtcl8.6:s390x (8.6.14+dfsg-1build1) ... 224s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 224s Setting up python3-pluggy (1.5.0-1) ... 224s Setting up libxslt1.1:s390x (1.1.39-0exp1build1) ... 224s Setting up libopenjp2-7:s390x (2.5.0-2build3) ... 224s Setting up libharfbuzz0b:s390x (8.3.0-2build2) ... 224s Setting up python3-dateutil (2.9.0-2) ... 224s Setting up libxss1:s390x (1:1.2.3-1build3) ... 224s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 224s Setting up python3-mpmath (1.3.0-1) ... 225s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 225s Setting up libwebpmux3:s390x (1.4.0-0.1) ... 225s Setting up python3-appdirs (1.4.4-4) ... 225s Setting up python3-sympy (1.12-8) ... 233s Setting up liblapack3:s390x (3.12.0-3build1) ... 233s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 233s Setting up libxft2:s390x (2.3.6-1build1) ... 233s Setting up python3-pytest (8.2.2-1ubuntu1) ... 233s Setting up libtk8.6:s390x (8.6.14-1build1) ... 233s Setting up libtbbbind-2-5:s390x (2021.11.0-2ubuntu2) ... 233s Setting up python3-fs (2.4.16-4) ... 234s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 234s Setting up libraqm0:s390x (0.10.1-1build1) ... 234s Setting up python3-numpy (1:1.26.4+ds-10) ... 236s Setting up python3-lxml:s390x (5.2.1-1) ... 236s Setting up python3-contourpy (1.0.7-3) ... 236s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ... 236s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 236s Setting up python3-scipy (1.11.4-10) ... 240s Setting up python3-pot (0.9.3+dfsg-2) ... 240s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 240s """ 240s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 240s """ 240s Setting up blt (2.5.3+dfsg-7build1) ... 240s Setting up python3-sklearn-lib:s390x (1.4.2+dfsg-1) ... 240s Setting up python3-tk:s390x (3.12.3-0ubuntu1) ... 240s Setting up libtbb12:s390x (2021.11.0-2ubuntu2) ... 240s Setting up python3-pil:s390x (10.3.0-2) ... 241s Setting up python3-pil.imagetk:s390x (10.3.0-2) ... 241s Setting up python3-eagerpy (0.30.0-3) ... 241s Setting up python3-sklearn (1.4.2+dfsg-1) ... 243s Setting up python3-gudhi (3.9.0+dfsg-1build3) ... 244s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 244s Setting up python3-fonttools (4.46.0-1build2) ... 245s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 247s Setting up autopkgtest-satdep (0) ... 247s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 247s Processing triggers for man-db (2.12.1-1) ... 250s (Reading database ... 62487 files and directories currently installed.) 250s Removing autopkgtest-satdep (0) ... 251s autopkgtest [01:16:59]: test python-upstream.sh: [----------------------- 251s Running tests with Python 3.12. 253s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 253s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 253s ============================= test session starts ============================== 253s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 253s rootdir: /tmp/autopkgtest.chuGoR/autopkgtest_tmp 253s collected 156 items / 31 deselected / 125 selected 253s 254s test/test_alpha_complex.py ............. [ 10%] 254s test/test_betti_curve_representations.py .... [ 13%] 254s test/test_bottleneck_distance.py . [ 14%] 254s test/test_collapse_edges.py .. [ 16%] 254s test/test_cover_complex.py ....... [ 21%] 254s test/test_cubical_complex.py .................. [ 36%] 254s test/test_datasets_generators.py .. [ 37%] 254s test/test_dtm_rips_complex.py ... [ 40%] 254s test/test_euclidean_witness_complex.py .... [ 43%] 254s test/test_off.py . [ 44%] 254s test/test_persistence_graphical_tools.py ...... [ 48%] 254s test/test_reader_utils.py ...... [ 53%] 254s test/test_representations_preprocessing.py . [ 54%] 254s test/test_rips_complex.py ....... [ 60%] 254s test/test_simplex_generators.py ... [ 62%] 254s test/test_simplex_tree.py .................... [ 78%] 254s test/test_simplex_tree_serialization.py . [ 79%] 254s test/test_sklearn_cubical_persistence.py ... [ 81%] 254s test/test_subsampling.py ..... [ 85%] 254s test/test_tangential_complex.py . [ 86%] 254s test/test_time_delay.py . [ 87%] 254s test/test_tomato.py . [ 88%] 254s test/test_wasserstein_barycenter.py . [ 88%] 254s test/test_wasserstein_distance.py ....... [ 94%] 254s test/test_weighted_rips_complex.py .... [ 97%] 254s test/test_witness_complex.py ... [100%] 254s 254s =============================== warnings summary =============================== 254s test/test_persistence_graphical_tools.py::test_limit_plot_persistence 254s /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:103: MatplotlibDeprecationWarning: The checkdep_usetex function was deprecated in Matplotlib 3.6 and will be removed two minor releases later. Use a vendored copy of this function instead. 254s return checkdep_usetex(True) 254s 254s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter 254s /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:60: UserWarning: Computing barycenter of empty diag set. Returns None. 254s warnings.warn("Computing barycenter of empty diag set. Returns None.") 254s 254s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 254s ================ 125 passed, 31 deselected, 2 warnings in 2.77s ================ 254s ********** 255s autopkgtest [01:17:03]: test python-upstream.sh: -----------------------] 255s autopkgtest [01:17:03]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 255s python-upstream.sh PASS 256s autopkgtest [01:17:04]: @@@@@@@@@@@@@@@@@@@@ summary 256s python-upstream.sh PASS 267s nova [W] Using flock in scalingstack-bos02-s390x 267s Creating nova instance adt-oracular-s390x-gudhi-20240608-011248-juju-7f2275-prod-proposed-migration-environment-2-f1984c67-3a84-45b8-94b9-d0326d5ebdd7 from image adt/ubuntu-oracular-s390x-server-20240606.img (UUID c2edf6d9-1f4d-4194-8524-0e2e503a1721)...