0s autopkgtest [16:06:56]: starting date and time: 2024-07-12 16:06:56+0000 3s autopkgtest [16:06:59]: git checkout: fd3bed09 nova: allow more retries for quota issues 3s autopkgtest [16:06:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mmet53v8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-s390x-7.secgroup --name adt-oracular-s390x-cyvcf2-20240712-160656-juju-7f2275-prod-proposed-migration-environment-2-12412898-e03b-4685-b94c-534ac7e33707 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 171s autopkgtest [16:09:47]: testbed dpkg architecture: s390x 171s autopkgtest [16:09:47]: testbed apt version: 2.9.6 171s autopkgtest [16:09:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 178s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 179s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 179s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 179s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB] 179s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB] 179s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [74.0 kB] 179s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2104 B] 179s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 179s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 179s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [345 kB] 179s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [7748 B] 179s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 179s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 179s Fetched 959 kB in 1s (1187 kB/s) 179s Reading package lists... 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 202s Calculating upgrade... 202s The following packages will be upgraded: 202s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 202s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 202s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data 202s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 202s openssh-server openssh-sftp-server openssl telnet 202s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 202s Need to get 20.4 MB of archives. 202s After this operation, 383 kB of additional disk space will be used. 202s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 202s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 202s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 202s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 202s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 202s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 203s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 203s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 203s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 203s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 203s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 203s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 203s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 203s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 203s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 203s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 203s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 203s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 203s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 203s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 203s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 203s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 203s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 203s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 203s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 203s Preconfiguring packages ... 203s Fetched 20.4 MB in 1s (16.0 MB/s) 203s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 203s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 203s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 203s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 203s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 204s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 204s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 204s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 204s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 204s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 204s Error: Could not restart systemd, systemd binary not working 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 204s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 204s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 204s Setting up libc-bin (2.39-3.1ubuntu3) ... 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 204s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 204s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 204s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 204s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 204s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 204s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 204s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 204s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 204s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 204s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 204s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 204s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 204s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 204s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 204s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 204s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 204s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 205s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_s390x.deb ... 205s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 205s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 205s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 205s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_s390x.deb ... 205s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 205s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 205s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 205s Preparing to unpack .../11-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../12-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../13-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../14-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../15-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../16-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../17-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 205s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 205s Preparing to unpack .../18-libnss3_2%3a3.102-1_s390x.deb ... 205s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 205s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 205s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 205s Setting up libnghttp2-14:s390x (1.62.1-2) ... 205s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 205s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 205s Setting up libnss3:s390x (2:3.102-1) ... 205s Setting up locales (2.39-3.1ubuntu3) ... 206s Generating locales (this might take a while)... 207s en_US.UTF-8... done 207s Generation complete. 207s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 207s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 207s No schema files found: doing nothing. 207s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 207s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 207s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 207s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 207s Setting up openssl (3.2.2-1ubuntu1) ... 207s Installing new version of config file /etc/ssl/openssl.cnf ... 207s Setting up libc-devtools (2.39-3.1ubuntu3) ... 207s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 207s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 207s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 207s Setting up telnet (0.17+2.5-5ubuntu1) ... 207s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 207s Installing new version of config file /etc/pam.d/sshd ... 208s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 208s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 208s Processing triggers for ufw (0.36.2-6) ... 208s Processing triggers for systemd (256-1ubuntu1) ... 209s Processing triggers for man-db (2.12.1-2) ... 210s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 210s Reading package lists... 210s Building dependency tree... 210s Reading state information... 210s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 216s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 216s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 216s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 217s Reading package lists... 217s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s Calculating upgrade... 218s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 218s Reading package lists... 218s Building dependency tree... 218s Reading state information... 218s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 225s autopkgtest [16:10:39]: rebooting testbed after setup commands that affected boot 281s autopkgtest [16:11:37]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024 306s autopkgtest [16:12:02]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 310s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (dsc) [2486 B] 310s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (tar) [420 kB] 310s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (diff) [6696 B] 310s gpgv: Signature made Sat Jun 1 08:34:30 2024 UTC 310s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 310s gpgv: issuer "emollier@debian.org" 310s gpgv: Can't check signature: No public key 310s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.0-1.dsc: no acceptable signature found 310s autopkgtest [16:12:06]: testing package cyvcf2 version 0.31.0-1 334s autopkgtest [16:12:30]: build not needed 358s autopkgtest [16:12:54]: test run-unit-test: preparing testbed 371s Reading package lists... 371s Building dependency tree... 371s Reading state information... 371s Starting pkgProblemResolver with broken count: 0 371s Starting 2 pkgProblemResolver with broken count: 0 371s Done 371s The following additional packages will be installed: 371s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 371s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 371s python3-humanfriendly python3-iniconfig python3-numpy python3-packaging 371s python3-pluggy python3-pytest 371s Suggested packages: 371s gcc gfortran python-numpy-doc python3-dev 371s The following NEW packages will be installed: 371s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 371s python3-all python3-click python3-colorama python3-coloredlogs 371s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 371s python3-packaging python3-pluggy python3-pytest 371s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 371s Need to get 9904 kB/9905 kB of archives. 371s After this operation, 40.9 MB of additional disk space will be used. 371s Get:1 /tmp/autopkgtest.0fa0YL/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [724 B] 371s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 372s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 372s Get:4 http://ftpmaster.internal/ubuntu oracular/universe s390x libhtscodecs2 s390x 1.6.0-1build1 [87.0 kB] 372s Get:5 http://ftpmaster.internal/ubuntu oracular/universe s390x libhts3t64 s390x 1.20+ds-1 [470 kB] 372s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 372s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B] 372s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x python3-colorama all 0.4.6-4 [32.1 kB] 372s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x python3-click all 8.1.7-1 [79.1 kB] 372s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-humanfriendly all 10.0-5 [70.5 kB] 372s Get:11 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-coloredlogs all 15.0.1-1 [38.2 kB] 372s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 372s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-cyvcf2 s390x 0.31.0-1 [843 kB] 372s Get:14 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-iniconfig all 1.1.1-2 [6024 B] 372s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x python3-packaging all 24.1-1 [41.4 kB] 372s Get:16 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pluggy all 1.5.0-1 [21.0 kB] 372s Get:17 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-pytest all 7.4.4-1 [305 kB] 372s Fetched 9904 kB in 1s (10.5 MB/s) 372s Selecting previously unselected package libblas3:s390x. 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 372s Preparing to unpack .../00-libblas3_3.12.0-3build1_s390x.deb ... 372s Unpacking libblas3:s390x (3.12.0-3build1) ... 372s Selecting previously unselected package libgfortran5:s390x. 372s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 372s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 372s Selecting previously unselected package libhtscodecs2:s390x. 372s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_s390x.deb ... 372s Unpacking libhtscodecs2:s390x (1.6.0-1build1) ... 372s Selecting previously unselected package libhts3t64:s390x. 372s Preparing to unpack .../03-libhts3t64_1.20+ds-1_s390x.deb ... 372s Unpacking libhts3t64:s390x (1.20+ds-1) ... 372s Selecting previously unselected package liblapack3:s390x. 372s Preparing to unpack .../04-liblapack3_3.12.0-3build1_s390x.deb ... 372s Unpacking liblapack3:s390x (3.12.0-3build1) ... 373s Selecting previously unselected package python3-all. 373s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_s390x.deb ... 373s Unpacking python3-all (3.12.3-0ubuntu1) ... 373s Selecting previously unselected package python3-colorama. 373s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 373s Unpacking python3-colorama (0.4.6-4) ... 373s Selecting previously unselected package python3-click. 373s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 373s Unpacking python3-click (8.1.7-1) ... 373s Selecting previously unselected package python3-humanfriendly. 373s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 373s Unpacking python3-humanfriendly (10.0-5) ... 373s Selecting previously unselected package python3-coloredlogs. 373s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 373s Unpacking python3-coloredlogs (15.0.1-1) ... 373s Selecting previously unselected package python3-numpy. 373s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_s390x.deb ... 373s Unpacking python3-numpy (1:1.26.4+ds-10) ... 373s Selecting previously unselected package python3-cyvcf2. 373s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_s390x.deb ... 373s Unpacking python3-cyvcf2 (0.31.0-1) ... 373s Selecting previously unselected package python3-iniconfig. 373s Preparing to unpack .../12-python3-iniconfig_1.1.1-2_all.deb ... 373s Unpacking python3-iniconfig (1.1.1-2) ... 373s Selecting previously unselected package python3-packaging. 373s Preparing to unpack .../13-python3-packaging_24.1-1_all.deb ... 373s Unpacking python3-packaging (24.1-1) ... 373s Selecting previously unselected package python3-pluggy. 373s Preparing to unpack .../14-python3-pluggy_1.5.0-1_all.deb ... 373s Unpacking python3-pluggy (1.5.0-1) ... 373s Selecting previously unselected package python3-pytest. 373s Preparing to unpack .../15-python3-pytest_7.4.4-1_all.deb ... 373s Unpacking python3-pytest (7.4.4-1) ... 373s Selecting previously unselected package autopkgtest-satdep. 373s Preparing to unpack .../16-1-autopkgtest-satdep.deb ... 373s Unpacking autopkgtest-satdep (0) ... 373s Setting up libhtscodecs2:s390x (1.6.0-1build1) ... 373s Setting up python3-iniconfig (1.1.1-2) ... 373s Setting up python3-colorama (0.4.6-4) ... 373s Setting up python3-all (3.12.3-0ubuntu1) ... 373s Setting up python3-click (8.1.7-1) ... 373s Setting up libblas3:s390x (3.12.0-3build1) ... 373s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 373s Setting up python3-packaging (24.1-1) ... 374s Setting up python3-humanfriendly (10.0-5) ... 374s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 374s Setting up python3-pluggy (1.5.0-1) ... 374s Setting up libhts3t64:s390x (1.20+ds-1) ... 374s Setting up python3-coloredlogs (15.0.1-1) ... 374s Setting up liblapack3:s390x (3.12.0-3build1) ... 374s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 374s Setting up python3-pytest (7.4.4-1) ... 375s Setting up python3-numpy (1:1.26.4+ds-10) ... 377s Setting up python3-cyvcf2 (0.31.0-1) ... 377s Setting up autopkgtest-satdep (0) ... 377s Processing triggers for man-db (2.12.1-2) ... 377s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 387s (Reading database ... 55982 files and directories currently installed.) 387s Removing autopkgtest-satdep (0) ... 389s autopkgtest [16:13:25]: test run-unit-test: [----------------------- 390s Testing with python3.12 in /tmp/autopkgtest.0fa0YL/autopkgtest_tmp: 390s ============================= test session starts ============================== 390s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 390s cachedir: .pytest_cache 390s rootdir: /tmp/autopkgtest.0fa0YL/autopkgtest_tmp 390s collecting ... collected 112 items 390s 390s cyvcf2/tests/test_cli.py::test_version PASSED [ 0%] 390s cyvcf2/tests/test_hemi.py::test_hemi PASSED [ 1%] 391s cyvcf2/tests/test_reader.py::test_init PASSED [ 2%] 391s cyvcf2/tests/test_reader.py::test_type PASSED [ 3%] 391s cyvcf2/tests/test_reader.py::test_type_mnp PASSED [ 4%] 391s cyvcf2/tests/test_reader.py::test_format_str PASSED [ 5%] 391s cyvcf2/tests/test_reader.py::test_missing_samples PASSED [ 6%] 391s cyvcf2/tests/test_reader.py::test_ibd PASSED [ 7%] 391s cyvcf2/tests/test_reader.py::test_relatedness PASSED [ 8%] 391s cyvcf2/tests/test_reader.py::test_pls PASSED [ 8%] 391s cyvcf2/tests/test_reader.py::test_gt_alt_freqs PASSED [ 9%] 391s cyvcf2/tests/test_reader.py::test_str PASSED [ 10%] 391s cyvcf2/tests/test_reader.py::test_region PASSED [ 11%] 391s cyvcf2/tests/test_reader.py::test_empty_info PASSED [ 12%] 391s cyvcf2/tests/test_reader.py::test_phases PASSED [ 13%] 391s cyvcf2/tests/test_reader.py::test_bad_init PASSED [ 14%] 391s cyvcf2/tests/test_reader.py::test_samples PASSED [ 15%] 391s cyvcf2/tests/test_reader.py::test_next PASSED [ 16%] 391s cyvcf2/tests/test_reader.py::test_variant PASSED [ 16%] 391s cyvcf2/tests/test_reader.py::test_info_dict PASSED [ 17%] 391s cyvcf2/tests/test_reader.py::test_attrs PASSED [ 18%] 391s cyvcf2/tests/test_reader.py::test_empty PASSED [ 19%] 391s cyvcf2/tests/test_reader.py::test_format_field PASSED [ 20%] 391s cyvcf2/tests/test_reader.py::test_writer_from_string PASSED [ 21%] 391s cyvcf2/tests/test_reader.py::test_isa PASSED [ 22%] 391s cyvcf2/tests/test_reader.py::test_writer PASSED [ 23%] 391s cyvcf2/tests/test_reader.py::test_filters PASSED [ 24%] 391s cyvcf2/tests/test_reader.py::test_add_info_to_header PASSED [ 25%] 391s cyvcf2/tests/test_reader.py::test_read_flag PASSED [ 25%] 391s cyvcf2/tests/test_reader.py::test_add_flag PASSED [ 26%] 391s cyvcf2/tests/test_reader.py::test_issue198 PASSED [ 27%] 391s cyvcf2/tests/test_reader.py::test_constants PASSED [ 28%] 391s cyvcf2/tests/test_reader.py::test_add_filter_to_header PASSED [ 29%] 391s cyvcf2/tests/test_reader.py::test_seqnames PASSED [ 30%] 391s cyvcf2/tests/test_reader.py::test_different_index PASSED [ 31%] 391s cyvcf2/tests/test_reader.py::test_var_type PASSED [ 32%] 391s cyvcf2/tests/test_reader.py::test_header_info PASSED [ 33%] 391s cyvcf2/tests/test_reader.py::test_snpeff_header PASSED [ 33%] 391s cyvcf2/tests/test_reader.py::test_gt_types PASSED [ 34%] 391s cyvcf2/tests/test_reader.py::test_raw_header PASSED [ 35%] 391s cyvcf2/tests/test_reader.py::test_iterate PASSED [ 36%] 391s cyvcf2/tests/test_reader.py::test_empty_call PASSED [ 37%] 391s cyvcf2/tests/test_reader.py::test_haploid PASSED [ 38%] 391s cyvcf2/tests/test_reader.py::test_diploid PASSED [ 39%] 391s cyvcf2/tests/test_reader.py::test_format PASSED [ 40%] 391s cyvcf2/tests/test_reader.py::test_header_stuff PASSED [ 41%] 391s cyvcf2/tests/test_reader.py::test_bcf PASSED [ 41%] 391s cyvcf2/tests/test_reader.py::test_vcf_no_intervals PASSED [ 42%] 391s cyvcf2/tests/test_reader.py::test_issue12 PASSED [ 43%] 391s cyvcf2/tests/test_reader.py::test_gt_bases_nondiploid PASSED [ 44%] 391s cyvcf2/tests/test_reader.py::test_set_format_float PASSED [ 45%] 391s cyvcf2/tests/test_reader.py::test_set_format_int_a PASSED [ 46%] 391s cyvcf2/tests/test_reader.py::test_set_format_int_b PASSED [ 47%] 391s cyvcf2/tests/test_reader.py::test_set_format_int_c PASSED [ 48%] 391s cyvcf2/tests/test_reader.py::test_set_format_int3 PASSED [ 49%] 391s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_second_longer PASSED [ 50%] 391s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_first_longer PASSED [ 50%] 391s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_number3 PASSED [ 51%] 391s cyvcf2/tests/test_reader.py::test_set_gts PASSED [ 52%] 391s cyvcf2/tests/test_reader.py::test_info_del PASSED [ 53%] 391s cyvcf2/tests/test_reader.py::test_filter_id PASSED [ 54%] 391s cyvcf2/tests/test_reader.py::test_access_gts PASSED [ 55%] 391s cyvcf2/tests/test_reader.py::test_access_genotype PASSED [ 56%] 391s cyvcf2/tests/test_reader.py::test_access_genotype_array PASSED [ 57%] 391s cyvcf2/tests/test_reader.py::test_alt_homozygous_gt PASSED [ 58%] 391s cyvcf2/tests/test_reader.py::test_write_missing_contig PASSED [ 58%] 391s cyvcf2/tests/test_reader.py::test_set_samples PASSED [ 59%] 391s cyvcf2/tests/test_reader.py::test_hrec PASSED [ 60%] 391s cyvcf2/tests/test_reader.py::test_issue44 PASSED [ 61%] 391s cyvcf2/tests/test_reader.py::test_id_field_updates PASSED [ 62%] 391s cyvcf2/tests/test_reader.py::test_set_pos PASSED [ 63%] 391s cyvcf2/tests/test_reader.py::test_set_chrom_when_contig_not_in_header PASSED [ 64%] 391s cyvcf2/tests/test_reader.py::test_set_chrom_after_contig_is_added_to_header PASSED [ 65%] 391s cyvcf2/tests/test_reader.py::test_set_qual PASSED [ 66%] 391s cyvcf2/tests/test_reader.py::test_strict_gt_option_flag PASSED [ 66%] 391s cyvcf2/tests/test_reader.py::test_alt_repr PASSED [ 67%] 391s cyvcf2/tests/test_reader.py::test_closed_iter PASSED [ 68%] 391s cyvcf2/tests/test_reader.py::test_issue72 PASSED [ 69%] 391s cyvcf2/tests/test_reader.py::test_is_transition PASSED [ 70%] 391s cyvcf2/tests/test_reader.py::test_decomposed PASSED [ 71%] 391s cyvcf2/tests/test_reader.py::test_fd PASSED [ 72%] 391s cyvcf2/tests/test_reader.py::test_set_reference PASSED [ 73%] 391s cyvcf2/tests/test_reader.py::test_set_alternates PASSED [ 74%] 391s cyvcf2/tests/test_reader.py::test_no_seqlen PASSED [ 75%] 391s cyvcf2/tests/test_reader.py::test_set_unknown_format PASSED [ 75%] 391s cyvcf2/tests/test_reader.py::test_invalid_header PASSED [ 76%] 391s cyvcf2/tests/test_reader.py::test_genotypes PASSED [ 77%] 391s cyvcf2/tests/test_reader.py::test_issue236 PASSED [ 78%] 391s cyvcf2/tests/test_reader.py::test_issue17_no_gt PASSED [ 79%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.vcf.gz] PASSED [ 80%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-multiallelic-homozygous-alt.vcf.gz] PASSED [ 81%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz0] PASSED [ 82%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz1] PASSED [ 83%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.vcf.gz] PASSED [ 83%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.bcf] PASSED [ 84%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.snpeff.bcf] PASSED [ 85%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[csi] PASSED [ 86%] 391s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[tbi] PASSED [ 87%] 391s cyvcf2/tests/test_reader.py::test_num_records_set_index_multiple_times PASSED [ 88%] 391s cyvcf2/tests/test_reader.py::test_num_records_set_wrong_index PASSED [ 89%] 391s cyvcf2/tests/test_reader.py::test_num_records_no_index[test-genotypes.vcf] PASSED [ 90%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithVcfFname_returnsUncompressedVcf PASSED [ 91%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFname_returnsCompressedBcf PASSED [ 91%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf PASSED [ 92%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedBcfFname_returnsCompressedBcf PASSED [ 93%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedVcfFname_returnsCompressedVcf PASSED [ 94%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithStdOut_returnsUncompressedVcf PASSED [ 95%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithNonVcfName_returnsUncompressedVcf PASSED [ 96%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithIntFname_returnsUncompressedVcf PASSED [ 97%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithHandle_returnsUncompressedVcf PASSED [ 98%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithPosixPath_returnsUncompressedVcf PASSED [ 99%] 391s cyvcf2/tests/test_writer.py::TestFileModeInference::test_explicitMode_doesNotInferFromFname PASSED [100%] 391s 391s ============================= 112 passed in 1.19s ============================== 392s autopkgtest [16:13:28]: test run-unit-test: -----------------------] 392s run-unit-test PASS 392s autopkgtest [16:13:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 393s autopkgtest [16:13:29]: test autodep8-python3: preparing testbed 565s autopkgtest [16:16:15]: testbed dpkg architecture: s390x 565s autopkgtest [16:16:21]: testbed apt version: 2.9.6 565s autopkgtest [16:16:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 589s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 589s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB] 589s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB] 589s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 589s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 589s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [74.0 kB] 590s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x c-n-f Metadata [2104 B] 590s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1368 B] 590s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x c-n-f Metadata [120 B] 590s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [345 kB] 590s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x c-n-f Metadata [7748 B] 590s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [1448 B] 590s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x c-n-f Metadata [120 B] 590s Fetched 959 kB in 1s (1301 kB/s) 590s Reading package lists... 592s Reading package lists... 592s Building dependency tree... 592s Reading state information... 592s Calculating upgrade... 592s The following packages will be upgraded: 592s binutils binutils-common binutils-s390x-linux-gnu gir1.2-glib-2.0 592s inetutils-telnet libbinutils libc-bin libc-dev-bin libc-devtools libc6 592s libc6-dev libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data 592s libnghttp2-14 libnss3 libsframe1 libssl3t64 locales openssh-client 592s openssh-server openssh-sftp-server openssl telnet 593s 25 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 593s Need to get 20.4 MB of archives. 593s After this operation, 383 kB of additional disk space will be used. 593s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-devtools s390x 2.39-3.1ubuntu3 [30.7 kB] 593s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6-dev s390x 2.39-3.1ubuntu3 [1626 kB] 593s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-dev-bin s390x 2.39-3.1ubuntu3 [20.2 kB] 593s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc6 s390x 2.39-3.1ubuntu3 [2841 kB] 593s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x libc-bin s390x 2.39-3.1ubuntu3 [654 kB] 593s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x libssl3t64 s390x 3.2.2-1ubuntu1 [1837 kB] 593s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-sftp-server s390x 1:9.6p1-3ubuntu17 [38.2 kB] 593s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-server s390x 1:9.6p1-3ubuntu17 [525 kB] 593s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x openssh-client s390x 1:9.6p1-3ubuntu17 [928 kB] 593s Get:10 http://ftpmaster.internal/ubuntu oracular/main s390x gir1.2-glib-2.0 s390x 2.80.4-1ubuntu1 [180 kB] 593s Get:11 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-0t64 s390x 2.80.4-1ubuntu1 [1551 kB] 593s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 593s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x locales all 2.39-3.1ubuntu3 [4220 kB] 594s Get:14 http://ftpmaster.internal/ubuntu oracular/main s390x openssl s390x 3.2.2-1ubuntu1 [1125 kB] 594s Get:15 http://ftpmaster.internal/ubuntu oracular/main s390x inetutils-telnet s390x 2:2.5-5ubuntu1 [110 kB] 594s Get:16 http://ftpmaster.internal/ubuntu oracular/main s390x libnghttp2-14 s390x 1.62.1-2 [76.9 kB] 594s Get:17 http://ftpmaster.internal/ubuntu oracular/main s390x telnet all 0.17+2.5-5ubuntu1 [3688 B] 594s Get:18 http://ftpmaster.internal/ubuntu oracular/main s390x libctf0 s390x 2.42.50.20240710-1ubuntu1 [100 kB] 594s Get:19 http://ftpmaster.internal/ubuntu oracular/main s390x libctf-nobfd0 s390x 2.42.50.20240710-1ubuntu1 [101 kB] 594s Get:20 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-s390x-linux-gnu s390x 2.42.50.20240710-1ubuntu1 [2289 kB] 594s Get:21 http://ftpmaster.internal/ubuntu oracular/main s390x libbinutils s390x 2.42.50.20240710-1ubuntu1 [471 kB] 594s Get:22 http://ftpmaster.internal/ubuntu oracular/main s390x binutils s390x 2.42.50.20240710-1ubuntu1 [3062 B] 594s Get:23 http://ftpmaster.internal/ubuntu oracular/main s390x binutils-common s390x 2.42.50.20240710-1ubuntu1 [220 kB] 594s Get:24 http://ftpmaster.internal/ubuntu oracular/main s390x libsframe1 s390x 2.42.50.20240710-1ubuntu1 [13.8 kB] 602s Get:25 http://ftpmaster.internal/ubuntu oracular/main s390x libnss3 s390x 2:3.102-1 [1408 kB] 602s Preconfiguring packages ... 602s Fetched 20.4 MB in 1s (15.7 MB/s) 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 602s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_s390x.deb ... 602s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_s390x.deb ... 602s Unpacking libc6-dev:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_s390x.deb ... 602s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Preparing to unpack .../libc6_2.39-3.1ubuntu3_s390x.deb ... 602s Unpacking libc6:s390x (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Setting up libc6:s390x (2.39-3.1ubuntu3) ... 602s Error: Could not restart systemd, systemd binary not working 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 602s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_s390x.deb ... 602s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Setting up libc-bin (2.39-3.1ubuntu3) ... 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 602s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_s390x.deb ... 602s Unpacking libssl3t64:s390x (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 602s Setting up libssl3t64:s390x (3.2.2-1ubuntu1) ... 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54721 files and directories currently installed.) 602s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 602s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 602s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_s390x.deb ... 602s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 602s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_s390x.deb ... 602s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 602s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_s390x.deb ... 602s Unpacking gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 602s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_s390x.deb ... 602s Unpacking libglib2.0-0t64:s390x (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 602s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 602s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 602s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 602s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 602s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_s390x.deb ... 602s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 602s Preparing to unpack .../08-inetutils-telnet_2%3a2.5-5ubuntu1_s390x.deb ... 602s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 602s Preparing to unpack .../09-libnghttp2-14_1.62.1-2_s390x.deb ... 602s Unpacking libnghttp2-14:s390x (1.62.1-2) over (1.62.1-1) ... 602s Preparing to unpack .../10-telnet_0.17+2.5-5ubuntu1_all.deb ... 602s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 602s Preparing to unpack .../11-libctf0_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking libctf0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../12-libctf-nobfd0_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../13-binutils-s390x-linux-gnu_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../14-libbinutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking libbinutils:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../15-binutils_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../16-binutils-common_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking binutils-common:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../17-libsframe1_2.42.50.20240710-1ubuntu1_s390x.deb ... 602s Unpacking libsframe1:s390x (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 602s Preparing to unpack .../18-libnss3_2%3a3.102-1_s390x.deb ... 602s Unpacking libnss3:s390x (2:3.102-1) over (2:3.101-1) ... 602s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 602s Setting up binutils-common:s390x (2.42.50.20240710-1ubuntu1) ... 602s Setting up libnghttp2-14:s390x (1.62.1-2) ... 602s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 602s Setting up libctf-nobfd0:s390x (2.42.50.20240710-1ubuntu1) ... 602s Setting up libnss3:s390x (2:3.102-1) ... 602s Setting up locales (2.39-3.1ubuntu3) ... 602s Generating locales (this might take a while)... 602s en_US.UTF-8... done 602s Generation complete. 602s Setting up libsframe1:s390x (2.42.50.20240710-1ubuntu1) ... 602s Setting up libglib2.0-0t64:s390x (2.80.4-1ubuntu1) ... 602s No schema files found: doing nothing. 602s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 602s Setting up gir1.2-glib-2.0:s390x (2.80.4-1ubuntu1) ... 602s Setting up libbinutils:s390x (2.42.50.20240710-1ubuntu1) ... 602s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 602s Setting up openssl (3.2.2-1ubuntu1) ... 602s Installing new version of config file /etc/ssl/openssl.cnf ... 602s Setting up libc-devtools (2.39-3.1ubuntu3) ... 602s Setting up libctf0:s390x (2.42.50.20240710-1ubuntu1) ... 602s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 602s Setting up binutils-s390x-linux-gnu (2.42.50.20240710-1ubuntu1) ... 602s Setting up telnet (0.17+2.5-5ubuntu1) ... 602s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 602s Installing new version of config file /etc/pam.d/sshd ... 602s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 602s Setting up libc6-dev:s390x (2.39-3.1ubuntu3) ... 602s Processing triggers for ufw (0.36.2-6) ... 602s Processing triggers for systemd (256-1ubuntu1) ... 602s Processing triggers for man-db (2.12.1-2) ... 602s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 602s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 602s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 602s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 602s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 602s Reading package lists...Reading package lists... 602s Building dependency tree... 602s Reading state information... 602s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 603s 603s Reading package lists... 603s Building dependency tree... 603s Reading state information... 603s Calculating upgrade... 603s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 603s Reading package lists... 604s Building dependency tree... 604s Reading state information... 604s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 605s autopkgtest [16:17:01]: rebooting testbed after setup commands that affected boot 612s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 687s Reading package lists... 687s Building dependency tree... 687s Reading state information... 688s Starting pkgProblemResolver with broken count: 0 688s Starting 2 pkgProblemResolver with broken count: 0 688s Done 688s The following additional packages will be installed: 688s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 688s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 688s python3-humanfriendly python3-numpy 688s Suggested packages: 688s gcc gfortran python-numpy-doc python3-dev python3-pytest 688s The following NEW packages will be installed: 688s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 688s python3-all python3-click python3-colorama python3-coloredlogs 688s python3-cyvcf2 python3-humanfriendly python3-numpy 688s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 688s Need to get 9531 kB/9531 kB of archives. 688s After this operation, 39.4 MB of additional disk space will be used. 688s Get:1 /tmp/autopkgtest.0fa0YL/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [716 B] 688s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libblas3 s390x 3.12.0-3build1 [245 kB] 689s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libgfortran5 s390x 14.1.0-1ubuntu1 [600 kB] 689s Get:4 http://ftpmaster.internal/ubuntu oracular/universe s390x libhtscodecs2 s390x 1.6.0-1build1 [87.0 kB] 689s Get:5 http://ftpmaster.internal/ubuntu oracular/universe s390x libhts3t64 s390x 1.20+ds-1 [470 kB] 689s Get:6 http://ftpmaster.internal/ubuntu oracular/main s390x liblapack3 s390x 3.12.0-3build1 [2976 kB] 690s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x python3-all s390x 3.12.3-0ubuntu1 [890 B] 690s Get:8 http://ftpmaster.internal/ubuntu oracular/main s390x python3-colorama all 0.4.6-4 [32.1 kB] 690s Get:9 http://ftpmaster.internal/ubuntu oracular/main s390x python3-click all 8.1.7-1 [79.1 kB] 690s Get:10 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-humanfriendly all 10.0-5 [70.5 kB] 690s Get:11 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-coloredlogs all 15.0.1-1 [38.2 kB] 690s Get:12 http://ftpmaster.internal/ubuntu oracular/main s390x python3-numpy s390x 1:1.26.4+ds-10 [4090 kB] 691s Get:13 http://ftpmaster.internal/ubuntu oracular/universe s390x python3-cyvcf2 s390x 0.31.0-1 [843 kB] 692s Fetched 9531 kB in 3s (2818 kB/s) 692s Selecting previously unselected package libblas3:s390x. 692s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 54720 files and directories currently installed.) 692s Preparing to unpack .../00-libblas3_3.12.0-3build1_s390x.deb ... 692s Unpacking libblas3:s390x (3.12.0-3build1) ... 692s Selecting previously unselected package libgfortran5:s390x. 692s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_s390x.deb ... 692s Unpacking libgfortran5:s390x (14.1.0-1ubuntu1) ... 692s Selecting previously unselected package libhtscodecs2:s390x. 692s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_s390x.deb ... 692s Unpacking libhtscodecs2:s390x (1.6.0-1build1) ... 692s Selecting previously unselected package libhts3t64:s390x. 692s Preparing to unpack .../03-libhts3t64_1.20+ds-1_s390x.deb ... 692s Unpacking libhts3t64:s390x (1.20+ds-1) ... 692s Selecting previously unselected package liblapack3:s390x. 692s Preparing to unpack .../04-liblapack3_3.12.0-3build1_s390x.deb ... 692s Unpacking liblapack3:s390x (3.12.0-3build1) ... 692s Selecting previously unselected package python3-all. 692s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_s390x.deb ... 692s Unpacking python3-all (3.12.3-0ubuntu1) ... 692s Selecting previously unselected package python3-colorama. 692s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 692s Unpacking python3-colorama (0.4.6-4) ... 692s Selecting previously unselected package python3-click. 692s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 692s Unpacking python3-click (8.1.7-1) ... 692s Selecting previously unselected package python3-humanfriendly. 692s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 692s Unpacking python3-humanfriendly (10.0-5) ... 692s Selecting previously unselected package python3-coloredlogs. 692s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 692s Unpacking python3-coloredlogs (15.0.1-1) ... 692s Selecting previously unselected package python3-numpy. 692s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_s390x.deb ... 692s Unpacking python3-numpy (1:1.26.4+ds-10) ... 692s Selecting previously unselected package python3-cyvcf2. 692s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_s390x.deb ... 692s Unpacking python3-cyvcf2 (0.31.0-1) ... 692s Selecting previously unselected package autopkgtest-satdep. 692s Preparing to unpack .../12-2-autopkgtest-satdep.deb ... 692s Unpacking autopkgtest-satdep (0) ... 692s Setting up libhtscodecs2:s390x (1.6.0-1build1) ... 692s Setting up python3-colorama (0.4.6-4) ... 692s Setting up python3-all (3.12.3-0ubuntu1) ... 692s Setting up python3-click (8.1.7-1) ... 693s Setting up libblas3:s390x (3.12.0-3build1) ... 693s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 693s Setting up python3-humanfriendly (10.0-5) ... 693s Setting up libgfortran5:s390x (14.1.0-1ubuntu1) ... 693s Setting up libhts3t64:s390x (1.20+ds-1) ... 693s Setting up python3-coloredlogs (15.0.1-1) ... 693s Setting up liblapack3:s390x (3.12.0-3build1) ... 693s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 693s Setting up python3-numpy (1:1.26.4+ds-10) ... 695s Setting up python3-cyvcf2 (0.31.0-1) ... 695s Setting up autopkgtest-satdep (0) ... 695s Processing triggers for man-db (2.12.1-2) ... 696s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 699s (Reading database ... 55818 files and directories currently installed.) 699s Removing autopkgtest-satdep (0) ... 705s autopkgtest [16:18:41]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 705s autopkgtest [16:18:41]: test autodep8-python3: [----------------------- 705s Testing with python3.12: 706s 706s autopkgtest [16:18:42]: test autodep8-python3: -----------------------] 706s autodep8-python3 PASS (superficial) 706s autopkgtest [16:18:42]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 707s autopkgtest [16:18:43]: @@@@@@@@@@@@@@@@@@@@ summary 707s run-unit-test PASS 707s autodep8-python3 PASS (superficial) 736s nova [W] Using flock in scalingstack-bos01-s390x 736s flock: timeout while waiting to get lock 736s Creating nova instance adt-oracular-s390x-cyvcf2-20240712-160656-juju-7f2275-prod-proposed-migration-environment-2-12412898-e03b-4685-b94c-534ac7e33707 from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)... 736s nova [W] Using flock in scalingstack-bos01-s390x 736s Creating nova instance adt-oracular-s390x-cyvcf2-20240712-160656-juju-7f2275-prod-proposed-migration-environment-2-12412898-e03b-4685-b94c-534ac7e33707 from image adt/ubuntu-oracular-s390x-server-20240711.img (UUID cd7d8501-1120-4d80-87a5-5946a33c5d4a)...