0s autopkgtest [10:26:17]: starting date and time: 2024-06-16 10:26:17+0000
  0s autopkgtest [10:26:17]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod'
  0s autopkgtest [10:26:17]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.87jzuvt_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:bamtools --apt-upgrade bamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=bamtools/2.5.2+dfsg-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-s390x-5.secgroup --name adt-oracular-s390x-bamtools-20240616-102617-juju-7f2275-prod-proposed-migration-environment-2-90983663-575f-45e8-8f84-d5c69b831270 --image adt/ubuntu-oracular-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 87s autopkgtest [10:27:44]: testbed dpkg architecture: s390x
 87s autopkgtest [10:27:44]: testbed apt version: 2.9.5
 87s autopkgtest [10:27:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 88s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 88s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [389 kB]
 89s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [36.1 kB]
 89s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 89s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
 89s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main s390x Packages [43.9 kB]
 89s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted s390x Packages [1860 B]
 89s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x Packages [298 kB]
 89s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse s390x Packages [2528 B]
 89s Fetched 892 kB in 1s (1188 kB/s)
 89s Reading package lists...
 91s Reading package lists...
 91s Building dependency tree...
 91s Reading state information...
 91s Calculating upgrade...
 91s The following packages will be upgraded:
 91s   libldap-common libldap2
 92s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 92s Need to get 230 kB of archives.
 92s After this operation, 16.4 kB disk space will be freed.
 92s Get:1 http://ftpmaster.internal/ubuntu oracular/main s390x libldap-common all 2.6.7+dfsg-1~exp1ubuntu9 [31.5 kB]
 92s Get:2 http://ftpmaster.internal/ubuntu oracular/main s390x libldap2 s390x 2.6.7+dfsg-1~exp1ubuntu9 [199 kB]
 92s Fetched 230 kB in 0s (551 kB/s)
 92s (Reading database ... 
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(Reading database ... 30%
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(Reading database ... 45%
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(Reading database ... 55%
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54671 files and directories currently installed.)
 92s Preparing to unpack .../libldap-common_2.6.7+dfsg-1~exp1ubuntu9_all.deb ...
 92s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
 92s Preparing to unpack .../libldap2_2.6.7+dfsg-1~exp1ubuntu9_s390x.deb ...
 92s Unpacking libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu9) over (2.6.7+dfsg-1~exp1ubuntu8) ...
 92s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu9) ...
 92s Setting up libldap2:s390x (2.6.7+dfsg-1~exp1ubuntu9) ...
 92s Processing triggers for man-db (2.12.1-2) ...
 92s Processing triggers for libc-bin (2.39-0ubuntu9) ...
 93s Reading package lists...
 93s Building dependency tree...
 93s Reading state information...
 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 93s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 93s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 93s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 93s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 94s Reading package lists...
 94s Reading package lists...
 94s Building dependency tree...
 94s Reading state information...
 95s Calculating upgrade...
 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 95s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 98s autopkgtest [10:27:55]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:14:26 UTC 2024
 98s autopkgtest [10:27:55]: @@@@@@@@@@@@@@@@@@@@ apt-source bamtools
101s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe bamtools 2.5.2+dfsg-5 (dsc) [2513 B]
101s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe bamtools 2.5.2+dfsg-5 (tar) [156 kB]
101s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe bamtools 2.5.2+dfsg-5 (diff) [10.4 kB]
101s gpgv: Signature made Fri Dec 15 18:13:56 2023 UTC
101s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
101s gpgv:                issuer "emollier@debian.org"
101s gpgv: Can't check signature: No public key
101s dpkg-source: warning: cannot verify inline signature for ./bamtools_2.5.2+dfsg-5.dsc: no acceptable signature found
101s autopkgtest [10:27:58]: testing package bamtools version 2.5.2+dfsg-5
101s autopkgtest [10:27:58]: build not needed
102s autopkgtest [10:27:59]: test run-unit-test: preparing testbed
103s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s Starting pkgProblemResolver with broken count: 0
103s Starting 2 pkgProblemResolver with broken count: 0
103s Done
103s The following additional packages will be installed:
103s   bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2 libjs-jquery
103s   libjsoncpp25 zlib1g-dev
103s Recommended packages:
103s   javascript-common
103s The following NEW packages will be installed:
103s   autopkgtest-satdep bamtools libbamtools-dev libbamtools-doc libbamtools2.5.2
103s   libjs-jquery libjsoncpp25 zlib1g-dev
103s 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded.
103s Need to get 2030 kB/2031 kB of archives.
103s After this operation, 7572 kB of additional disk space will be used.
103s Get:1 /tmp/autopkgtest.rGT1Rv/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [728 B]
103s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libbamtools2.5.2 s390x 2.5.2+dfsg-5 [142 kB]
104s Get:3 http://ftpmaster.internal/ubuntu oracular/main s390x libjsoncpp25 s390x 1.9.5-6build1 [82.5 kB]
104s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x bamtools s390x 2.5.2+dfsg-5 [173 kB]
104s Get:5 http://ftpmaster.internal/ubuntu oracular/main s390x zlib1g-dev s390x 1:1.3.dfsg-3.1ubuntu2 [904 kB]
104s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libbamtools-dev s390x 2.5.2+dfsg-5 [242 kB]
104s Get:7 http://ftpmaster.internal/ubuntu oracular/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
104s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe s390x libbamtools-doc all 2.5.2+dfsg-5 [159 kB]
104s Fetched 2030 kB in 1s (3066 kB/s)
104s Selecting previously unselected package libbamtools2.5.2:s390x.
104s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 54671 files and directories currently installed.)
104s Preparing to unpack .../0-libbamtools2.5.2_2.5.2+dfsg-5_s390x.deb ...
104s Unpacking libbamtools2.5.2:s390x (2.5.2+dfsg-5) ...
104s Selecting previously unselected package libjsoncpp25:s390x.
104s Preparing to unpack .../1-libjsoncpp25_1.9.5-6build1_s390x.deb ...
104s Unpacking libjsoncpp25:s390x (1.9.5-6build1) ...
104s Selecting previously unselected package bamtools.
104s Preparing to unpack .../2-bamtools_2.5.2+dfsg-5_s390x.deb ...
104s Unpacking bamtools (2.5.2+dfsg-5) ...
104s Selecting previously unselected package zlib1g-dev:s390x.
104s Preparing to unpack .../3-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_s390x.deb ...
104s Unpacking zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
104s Selecting previously unselected package libbamtools-dev:s390x.
104s Preparing to unpack .../4-libbamtools-dev_2.5.2+dfsg-5_s390x.deb ...
104s Unpacking libbamtools-dev:s390x (2.5.2+dfsg-5) ...
104s Selecting previously unselected package libjs-jquery.
104s Preparing to unpack .../5-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
104s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
104s Selecting previously unselected package libbamtools-doc.
104s Preparing to unpack .../6-libbamtools-doc_2.5.2+dfsg-5_all.deb ...
104s Unpacking libbamtools-doc (2.5.2+dfsg-5) ...
104s Selecting previously unselected package autopkgtest-satdep.
104s Preparing to unpack .../7-1-autopkgtest-satdep.deb ...
104s Unpacking autopkgtest-satdep (0) ...
104s Setting up libjsoncpp25:s390x (1.9.5-6build1) ...
104s Setting up libbamtools2.5.2:s390x (2.5.2+dfsg-5) ...
104s Setting up zlib1g-dev:s390x (1:1.3.dfsg-3.1ubuntu2) ...
104s Setting up bamtools (2.5.2+dfsg-5) ...
104s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
104s Setting up libbamtools-dev:s390x (2.5.2+dfsg-5) ...
104s Setting up libbamtools-doc (2.5.2+dfsg-5) ...
104s Setting up autopkgtest-satdep (0) ...
104s Processing triggers for man-db (2.12.1-2) ...
105s Processing triggers for libc-bin (2.39-0ubuntu9) ...
107s (Reading database ... 55069 files and directories currently installed.)
107s Removing autopkgtest-satdep (0) ...
108s autopkgtest [10:28:05]: test run-unit-test: [-----------------------
108s 6
108s The following test is known to time out on s390x architecture (see bug #953939)
108s bamtools filter -script filter_script -in sam_spec_example.bam -out out.bam
108s @HD	VN:1.5	SO:coordinate
108s @SQ	SN:ref	LN:45
108s 
108s /tmp/autopkgtest.rGT1Rv/build.dqL/src/debian/tests/run-unit-test: 27: [: armel-a: unexpected operator
108s *** buffer overflow detected ***: terminated
108s Aborted (core dumped)
109s autopkgtest [10:28:06]: test run-unit-test: -----------------------]
109s autopkgtest [10:28:06]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
109s run-unit-test        FAIL non-zero exit status 134
109s autopkgtest [10:28:06]: @@@@@@@@@@@@@@@@@@@@ summary
109s run-unit-test        FAIL non-zero exit status 134
120s nova [W] Using flock in scalingstack-bos02-s390x
120s Creating nova instance adt-oracular-s390x-bamtools-20240616-102617-juju-7f2275-prod-proposed-migration-environment-2-90983663-575f-45e8-8f84-d5c69b831270 from image adt/ubuntu-oracular-s390x-server-20240616.img (UUID dd882b34-7da0-4822-87ea-13d5ca0a8a0e)...