0s autopkgtest [09:26:47]: starting date and time: 2024-05-24 09:26:47+0000
  0s autopkgtest [09:26:47]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init
  0s autopkgtest [09:26:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hutpdf6e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-sf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/3.5.1+dfsg-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-19.secgroup --name adt-oracular-ppc64el-r-cran-sf-20240524-092646-juju-7f2275-prod-proposed-migration-environment-2-e5fe2ea9-3a61-466c-820b-16d8b5765967 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
227s autopkgtest [09:30:34]: testbed dpkg architecture: ppc64el
227s autopkgtest [09:30:34]: testbed apt version: 2.7.14build2
227s autopkgtest [09:30:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
228s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
228s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [497 kB]
229s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [54.1 kB]
229s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
229s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B]
229s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [160 kB]
229s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [489 kB]
229s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1968 B]
229s Fetched 1282 kB in 1s (1493 kB/s)
229s Reading package lists...
231s Reading package lists...
231s Building dependency tree...
231s Reading state information...
232s Calculating upgrade...
232s The following package was automatically installed and is no longer required:
232s   libatm1t64
232s Use 'sudo apt autoremove' to remove it.
232s The following packages will be upgraded:
232s   apparmor apport apport-core-dump-handler apt apt-utils bash-completion bc
232s   curl dhcpcd-base dpkg dpkg-dev dracut-install eatmydata fwupd gcc-14-base
232s   gir1.2-girepository-2.0 gir1.2-glib-2.0 groff-base initramfs-tools
232s   initramfs-tools-bin initramfs-tools-core iproute2 klibc-utils less libacl1
232s   libapparmor1 libapt-pkg6.0t64 libbpf1 libbsd0 libc-bin libc-dev-bin
232s   libc-devtools libc6 libc6-dev libcap-ng0 libclang-cpp18 libclang1-18
232s   libcurl3t64-gnutls libcurl4t64 libdpkg-perl libdw1t64 libeatmydata1
232s   libelf1t64 libevent-core-2.1-7t64 libexpat1 libfwupd2 libgcc-s1 libgcrypt20
232s   libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgnutls30t64
232s   libgpg-error-l10n libgpg-error0 libklibc libllvm18 liblocale-gettext-perl
232s   liblz4-1 libnss3 libnvme1t64 libpam-modules libpam-modules-bin
232s   libpam-runtime libpam0g libperl5.38t64 libsharpyuv0 libslang2 libsqlite3-0
232s   libstdc++6 libtirpc-common libtirpc3t64 libuv1t64 libwebp7 libxcb1 locales
232s   man-db pastebinit perl perl-base perl-modules-5.38 python-apt-common
232s   python-babel-localedata python3-apport python3-apt python3-babel
232s   python3-blinker python3-httplib2 python3-jinja2 python3-netaddr
232s   python3-problem-report python3-pyparsing python3-six
232s   python3-typing-extensions rsync tzdata ubuntu-pro-client
232s   ubuntu-pro-client-l10n vim-common vim-tiny xxd
232s 100 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
232s Need to get 110 MB of archives.
232s After this operation, 3828 kB disk space will be freed.
232s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-devtools ppc64el 2.39-0ubuntu8.1 [29.6 kB]
232s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc6-dev ppc64el 2.39-0ubuntu8.1 [2104 kB]
233s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu8.1 [21.3 kB]
233s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-14-base ppc64el 14.1.0-1ubuntu1 [48.4 kB]
233s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcc-s1 ppc64el 14.1.0-1ubuntu1 [39.2 kB]
233s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libstdc++6 ppc64el 14.1.0-1ubuntu1 [893 kB]
233s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc6 ppc64el 2.39-0ubuntu8.1 [3275 kB]
233s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgpg-error-l10n all 1.49-2 [8228 B]
233s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgpg-error0 ppc64el 1.49-2 [89.2 kB]
233s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcrypt20 ppc64el 1.10.3-3 [742 kB]
234s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblz4-1 ppc64el 1.9.4-2 [105 kB]
234s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapt-pkg6.0t64 ppc64el 2.9.3 [1091 kB]
234s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el dpkg ppc64el 1.22.6ubuntu10 [1339 kB]
234s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libperl5.38t64 ppc64el 5.38.2-4 [4938 kB]
234s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl ppc64el 5.38.2-4 [231 kB]
234s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-base ppc64el 5.38.2-4 [1906 kB]
234s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-modules-5.38 all 5.38.2-4 [3110 kB]
235s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-bin ppc64el 2.39-0ubuntu8.1 [751 kB]
235s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el apt ppc64el 2.9.3 [1429 kB]
235s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el apt-utils ppc64el 2.9.3 [231 kB]
235s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgnutls30t64 ppc64el 3.8.5-2ubuntu1 [1060 kB]
235s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam0g ppc64el 1.5.3-7ubuntu1 [75.7 kB]
235s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-modules-bin ppc64el 1.5.3-7ubuntu1 [57.8 kB]
235s Get:24 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-modules ppc64el 1.5.3-7ubuntu1 [325 kB]
235s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblocale-gettext-perl ppc64el 1.07-7 [15.8 kB]
235s Get:26 http://ftpmaster.internal/ubuntu oracular/main ppc64el libacl1 ppc64el 2.3.2-2 [21.1 kB]
235s Get:27 http://ftpmaster.internal/ubuntu oracular/main ppc64el rsync ppc64el 3.3.0-1 [485 kB]
235s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el python-apt-common all 2.9.0 [20.1 kB]
235s Get:29 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-apt ppc64el 2.9.0 [180 kB]
235s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pyparsing all 3.1.2-1 [86.4 kB]
235s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-httplib2 all 0.22.0-1 [30.4 kB]
235s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-problem-report all 2.28.1-0ubuntu4 [23.9 kB]
235s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-apport all 2.28.1-0ubuntu4 [92.1 kB]
235s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-girepository-2.0 ppc64el 1.80.1-3 [24.6 kB]
235s Get:35 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-glib-2.0 ppc64el 2.80.2-1ubuntu1 [182 kB]
235s Get:36 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-0t64 ppc64el 2.80.2-1ubuntu1 [1765 kB]
235s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgirepository-1.0-1 ppc64el 1.80.1-3 [94.2 kB]
235s Get:38 http://ftpmaster.internal/ubuntu oracular/main ppc64el apport-core-dump-handler all 2.28.1-0ubuntu4 [16.9 kB]
235s Get:39 http://ftpmaster.internal/ubuntu oracular/main ppc64el apport all 2.28.1-0ubuntu4 [83.4 kB]
235s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcap-ng0 ppc64el 0.8.5-1 [16.0 kB]
235s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-runtime all 1.5.3-7ubuntu1 [40.8 kB]
235s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el dhcpcd-base ppc64el 1:10.0.6-5 [273 kB]
235s Get:43 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdw1t64 ppc64el 0.191-1 [303 kB]
235s Get:44 http://ftpmaster.internal/ubuntu oracular/main ppc64el libelf1t64 ppc64el 0.191-1 [68.0 kB]
235s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbpf1 ppc64el 1:1.4.1-1 [220 kB]
235s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtirpc-common all 1.3.4+ds-1.3 [8106 B]
235s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.3 [101 kB]
235s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el iproute2 ppc64el 6.9.0-1 [1399 kB]
235s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el less ppc64el 590-2ubuntu2.1 [170 kB]
235s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapparmor1 ppc64el 4.0.1-0ubuntu1 [55.1 kB]
235s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbsd0 ppc64el 0.12.2-1 [56.3 kB]
235s Get:52 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexpat1 ppc64el 2.6.2-1 [98.5 kB]
235s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-data all 2.80.2-1ubuntu1 [49.3 kB]
235s Get:54 http://ftpmaster.internal/ubuntu oracular/main ppc64el libslang2 ppc64el 2.3.3-5 [503 kB]
235s Get:55 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsqlite3-0 ppc64el 3.45.3-1 [803 kB]
235s Get:56 http://ftpmaster.internal/ubuntu oracular/main ppc64el locales all 2.39-0ubuntu8.1 [4234 kB]
236s Get:57 http://ftpmaster.internal/ubuntu oracular/main ppc64el tzdata all 2024a-4ubuntu1 [274 kB]
236s Get:58 http://ftpmaster.internal/ubuntu oracular/main ppc64el ubuntu-pro-client-l10n ppc64el 32.1 [19.4 kB]
236s Get:59 http://ftpmaster.internal/ubuntu oracular/main ppc64el ubuntu-pro-client ppc64el 32.1 [229 kB]
236s Get:60 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-tiny ppc64el 2:9.1.0377-1ubuntu1 [1043 kB]
236s Get:61 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-common all 2:9.1.0377-1ubuntu1 [385 kB]
236s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el xxd ppc64el 2:9.1.0377-1ubuntu1 [64.0 kB]
236s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el apparmor ppc64el 4.0.1-0ubuntu1 [748 kB]
236s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el bash-completion all 1:2.14.0-1 [206 kB]
236s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el groff-base ppc64el 1.23.0-4 [1106 kB]
236s Get:66 http://ftpmaster.internal/ubuntu oracular/main ppc64el libuv1t64 ppc64el 1.48.0-4 [115 kB]
236s Get:67 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb1 ppc64el 1.17.0-2 [57.0 kB]
236s Get:68 http://ftpmaster.internal/ubuntu oracular/main ppc64el man-db ppc64el 2.12.1-1 [1278 kB]
236s Get:69 http://ftpmaster.internal/ubuntu oracular/main ppc64el bc ppc64el 1.07.1-4 [93.3 kB]
236s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el curl ppc64el 8.5.0-2ubuntu10.1 [234 kB]
236s Get:71 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu10.1 [428 kB]
236s Get:72 http://ftpmaster.internal/ubuntu oracular/main ppc64el dpkg-dev all 1.22.6ubuntu10 [1074 kB]
236s Get:73 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdpkg-perl all 1.22.6ubuntu10 [269 kB]
236s Get:74 http://ftpmaster.internal/ubuntu oracular/main ppc64el dracut-install ppc64el 060+5-8ubuntu1 [35.2 kB]
236s Get:75 http://ftpmaster.internal/ubuntu oracular/main ppc64el libeatmydata1 ppc64el 131-2 [7522 B]
236s Get:76 http://ftpmaster.internal/ubuntu oracular/main ppc64el eatmydata all 131-2 [5576 B]
236s Get:77 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu10.1 [420 kB]
236s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfwupd2 ppc64el 1.9.20-1 [137 kB]
236s Get:79 http://ftpmaster.internal/ubuntu oracular/main ppc64el fwupd ppc64el 1.9.20-1 [4641 kB]
236s Get:80 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools all 0.142ubuntu27 [7898 B]
236s Get:81 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools-core all 0.142ubuntu27 [49.5 kB]
236s Get:82 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu27 [21.6 kB]
236s Get:83 http://ftpmaster.internal/ubuntu oracular/main ppc64el klibc-utils ppc64el 2.0.13-4ubuntu1 [120 kB]
236s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el libklibc ppc64el 2.0.13-4ubuntu1 [54.2 kB]
236s Get:85 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclang-cpp18 ppc64el 1:18.1.6-1 [14.4 MB]
237s Get:86 http://ftpmaster.internal/ubuntu oracular/main ppc64el libllvm18 ppc64el 1:18.1.6-1 [28.7 MB]
239s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclang1-18 ppc64el 1:18.1.6-1 [8673 kB]
239s Get:88 http://ftpmaster.internal/ubuntu oracular/main ppc64el libevent-core-2.1-7t64 ppc64el 2.1.12-stable-10 [108 kB]
239s Get:89 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnss3 ppc64el 2:3.100-1 [1848 kB]
240s Get:90 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnvme1t64 ppc64el 1.9-1 [100 kB]
240s Get:91 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB]
240s Get:92 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB]
240s Get:93 http://ftpmaster.internal/ubuntu oracular/main ppc64el pastebinit all 1.7.0-1 [14.9 kB]
240s Get:94 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-babel all 2.14.0-1 [96.4 kB]
240s Get:95 http://ftpmaster.internal/ubuntu oracular/main ppc64el python-babel-localedata all 2.14.0-1 [6385 kB]
240s Get:96 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-blinker all 1.8.2-1 [11.4 kB]
240s Get:97 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-jinja2 all 3.1.3-1 [107 kB]
240s Get:98 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-netaddr all 0.10.1-1 [322 kB]
240s Get:99 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-six all 1.16.0-6 [13.0 kB]
240s Get:100 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-typing-extensions all 4.11.0-1 [61.5 kB]
240s Preconfiguring packages ...
240s Fetched 110 MB in 8s (13.7 MB/s)
241s (Reading database ... 
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(Reading database ... 72144 files and directories currently installed.)
241s Preparing to unpack .../libc-devtools_2.39-0ubuntu8.1_ppc64el.deb ...
241s Unpacking libc-devtools (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
241s Preparing to unpack .../libc6-dev_2.39-0ubuntu8.1_ppc64el.deb ...
241s Unpacking libc6-dev:ppc64el (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
241s Preparing to unpack .../libc-dev-bin_2.39-0ubuntu8.1_ppc64el.deb ...
241s Unpacking libc-dev-bin (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
241s Preparing to unpack .../gcc-14-base_14.1.0-1ubuntu1_ppc64el.deb ...
241s Unpacking gcc-14-base:ppc64el (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
241s Setting up gcc-14-base:ppc64el (14.1.0-1ubuntu1) ...
241s (Reading database ... 
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(Reading database ... 72144 files and directories currently installed.)
241s Preparing to unpack .../libgcc-s1_14.1.0-1ubuntu1_ppc64el.deb ...
241s Unpacking libgcc-s1:ppc64el (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
241s Setting up libgcc-s1:ppc64el (14.1.0-1ubuntu1) ...
241s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 72144 files and directories currently installed.)
241s Preparing to unpack .../libstdc++6_14.1.0-1ubuntu1_ppc64el.deb ...
241s Unpacking libstdc++6:ppc64el (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
241s Setting up libstdc++6:ppc64el (14.1.0-1ubuntu1) ...
241s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 72144 files and directories currently installed.)
241s Preparing to unpack .../libc6_2.39-0ubuntu8.1_ppc64el.deb ...
241s Unpacking libc6:ppc64el (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
241s Setting up libc6:ppc64el (2.39-0ubuntu8.1) ...
242s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 72144 files and directories currently installed.)
242s Preparing to unpack .../libgpg-error-l10n_1.49-2_all.deb ...
242s Unpacking libgpg-error-l10n (1.49-2) over (1.47-3build2) ...
242s Preparing to unpack .../libgpg-error0_1.49-2_ppc64el.deb ...
242s Unpacking libgpg-error0:ppc64el (1.49-2) over (1.47-3build2) ...
242s Setting up libgpg-error0:ppc64el (1.49-2) ...
242s (Reading database ... 
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250s Preparing to unpack .../43-libclang-cpp18_1%3a18.1.6-1_ppc64el.deb ...
250s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ...
251s Preparing to unpack .../44-libllvm18_1%3a18.1.6-1_ppc64el.deb ...
251s Unpacking libllvm18:ppc64el (1:18.1.6-1) over (1:18.1.3-1) ...
252s Preparing to unpack .../45-libclang1-18_1%3a18.1.6-1_ppc64el.deb ...
252s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ...
252s Preparing to unpack .../46-libevent-core-2.1-7t64_2.1.12-stable-10_ppc64el.deb ...
252s Unpacking libevent-core-2.1-7t64:ppc64el (2.1.12-stable-10) over (2.1.12-stable-9ubuntu2) ...
252s Preparing to unpack .../47-libnss3_2%3a3.100-1_ppc64el.deb ...
252s Unpacking libnss3:ppc64el (2:3.100-1) over (2:3.98-1build1) ...
252s Preparing to unpack .../48-libnvme1t64_1.9-1_ppc64el.deb ...
252s Unpacking libnvme1t64 (1.9-1) over (1.8-3build1) ...
252s Preparing to unpack .../49-libsharpyuv0_1.4.0-0.1_ppc64el.deb ...
252s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) over (1.3.2-0.4build3) ...
252s Preparing to unpack .../50-libwebp7_1.4.0-0.1_ppc64el.deb ...
252s Unpacking libwebp7:ppc64el (1.4.0-0.1) over (1.3.2-0.4build3) ...
252s Preparing to unpack .../51-pastebinit_1.7.0-1_all.deb ...
252s Unpacking pastebinit (1.7.0-1) over (1.6.2-1) ...
252s Preparing to unpack .../52-python3-babel_2.14.0-1_all.deb ...
252s Unpacking python3-babel (2.14.0-1) over (2.10.3-3build1) ...
252s Preparing to unpack .../53-python-babel-localedata_2.14.0-1_all.deb ...
252s Unpacking python-babel-localedata (2.14.0-1) over (2.10.3-3build1) ...
253s Preparing to unpack .../54-python3-blinker_1.8.2-1_all.deb ...
253s Unpacking python3-blinker (1.8.2-1) over (1.8.1-1) ...
253s Preparing to unpack .../55-python3-jinja2_3.1.3-1_all.deb ...
253s Unpacking python3-jinja2 (3.1.3-1) over (3.1.2-1ubuntu1) ...
253s Preparing to unpack .../56-python3-netaddr_0.10.1-1_all.deb ...
253s Unpacking python3-netaddr (0.10.1-1) over (0.8.0-2ubuntu1) ...
253s Preparing to unpack .../57-python3-six_1.16.0-6_all.deb ...
253s Unpacking python3-six (1.16.0-6) over (1.16.0-4) ...
253s Preparing to unpack .../58-python3-typing-extensions_4.11.0-1_all.deb ...
253s Unpacking python3-typing-extensions (4.11.0-1) over (4.10.0-1) ...
253s Setting up libexpat1:ppc64el (2.6.2-1) ...
253s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ...
253s Setting up libapparmor1:ppc64el (4.0.1-0ubuntu1) ...
253s Setting up libxcb1:ppc64el (1.17.0-2) ...
253s Setting up apt-utils (2.9.3) ...
253s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu10.1) ...
253s Setting up python3-problem-report (2.28.1-0ubuntu4) ...
253s Setting up libtirpc-common (1.3.4+ds-1.3) ...
253s Setting up libsqlite3-0:ppc64el (3.45.3-1) ...
253s Setting up libuv1t64:ppc64el (1.48.0-4) ...
253s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu10.1) ...
253s Setting up less (590-2ubuntu2.1) ...
253s Setting up bc (1.07.1-4) ...
253s Setting up pastebinit (1.7.0-1) ...
253s Setting up libnss3:ppc64el (2:3.100-1) ...
253s Setting up locales (2.39-0ubuntu8.1) ...
254s Generating locales (this might take a while)...
255s   en_US.UTF-8... done
255s Generation complete.
255s Setting up xxd (2:9.1.0377-1ubuntu1) ...
255s Setting up libelf1t64:ppc64el (0.191-1) ...
255s Setting up python-babel-localedata (2.14.0-1) ...
255s Setting up libdw1t64:ppc64el (0.191-1) ...
255s Setting up tzdata (2024a-4ubuntu1) ...
255s 
255s Current default time zone: 'Etc/UTC'
255s Local time is now:      Fri May 24 09:31:02 UTC 2024.
255s Universal Time is now:  Fri May 24 09:31:02 UTC 2024.
255s Run 'dpkg-reconfigure tzdata' if you wish to change it.
255s 
255s Setting up python3-six (1.16.0-6) ...
255s Setting up apparmor (4.0.1-0ubuntu1) ...
255s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
255s Installing new version of config file /etc/apparmor.d/abstractions/samba ...
255s Installing new version of config file /etc/apparmor.d/firefox ...
256s Reloading AppArmor profiles 
257s Setting up libklibc:ppc64el (2.0.13-4ubuntu1) ...
257s Setting up python3-jinja2 (3.1.3-1) ...
257s Setting up libglib2.0-0t64:ppc64el (2.80.2-1ubuntu1) ...
257s No schema files found: doing nothing.
257s Setting up libglib2.0-data (2.80.2-1ubuntu1) ...
257s Setting up vim-common (2:9.1.0377-1ubuntu1) ...
257s Setting up libslang2:ppc64el (2.3.3-5) ...
257s Setting up python3-pyparsing (3.1.2-1) ...
258s Setting up libnvme1t64 (1.9-1) ...
258s Setting up bash-completion (1:2.14.0-1) ...
258s Installing new version of config file /etc/profile.d/bash_completion.sh ...
258s Setting up perl-modules-5.38 (5.38.2-4) ...
258s Setting up dhcpcd-base (1:10.0.6-5) ...
258s Setting up python3-typing-extensions (4.11.0-1) ...
258s Setting up gir1.2-glib-2.0:ppc64el (2.80.2-1ubuntu1) ...
258s Setting up libwebp7:ppc64el (1.4.0-0.1) ...
258s Setting up python3-netaddr (0.10.1-1) ...
258s Setting up python-apt-common (2.9.0) ...
258s Setting up dracut-install (060+5-8ubuntu1) ...
258s Setting up groff-base (1.23.0-4) ...
258s Setting up libeatmydata1:ppc64el (131-2) ...
258s Setting up python3-httplib2 (0.22.0-1) ...
258s Setting up libgirepository-1.0-1:ppc64el (1.80.1-3) ...
258s Setting up libevent-core-2.1-7t64:ppc64el (2.1.12-stable-10) ...
258s Setting up curl (8.5.0-2ubuntu10.1) ...
258s Setting up libperl5.38t64:ppc64el (5.38.2-4) ...
258s Setting up libc-dev-bin (2.39-0ubuntu8.1) ...
258s Setting up klibc-utils (2.0.13-4ubuntu1) ...
258s Setting up libbsd0:ppc64el (0.12.2-1) ...
258s Setting up libgpg-error-l10n (1.49-2) ...
258s Setting up liblocale-gettext-perl (1.07-7) ...
258s Setting up libbpf1:ppc64el (1:1.4.1-1) ...
258s Setting up rsync (3.3.0-1) ...
259s rsync.service is a disabled or a static unit not running, not starting it.
259s Setting up libc-devtools (2.39-0ubuntu8.1) ...
259s Setting up libllvm18:ppc64el (1:18.1.6-1) ...
259s Setting up initramfs-tools-bin (0.142ubuntu27) ...
259s Setting up python3-blinker (1.8.2-1) ...
259s Setting up libclang1-18 (1:18.1.6-1) ...
259s Setting up eatmydata (131-2) ...
259s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.3) ...
259s Setting up python3-babel (2.14.0-1) ...
259s Setting up python3-apt (2.9.0) ...
260s Setting up iproute2 (6.9.0-1) ...
260s Removing obsolete conffile /etc/iproute2/group ...
260s Removing obsolete conffile /etc/iproute2/rt_realms ...
260s Removing obsolete conffile /etc/iproute2/rt_scopes ...
260s Removing obsolete conffile /etc/iproute2/rt_tables ...
260s Removing obsolete conffile /etc/iproute2/rt_tables.d/README ...
260s Removing obsolete conffile /etc/iproute2/rt_protos.d/README ...
260s Removing obsolete conffile /etc/iproute2/rt_protos ...
260s Removing obsolete conffile /etc/iproute2/rt_dsfield ...
260s Removing obsolete conffile /etc/iproute2/nl_protos ...
260s Removing obsolete conffile /etc/iproute2/ematch_map ...
260s Removing obsolete conffile /etc/iproute2/bpf_pinning ...
260s Setting up libfwupd2:ppc64el (1.9.20-1) ...
260s Setting up vim-tiny (2:9.1.0377-1ubuntu1) ...
260s Setting up man-db (2.12.1-1) ...
260s Updating database of manual pages ...
262s man-db.service is a disabled or a static unit not running, not starting it.
262s Setting up python3-apport (2.28.1-0ubuntu4) ...
262s Setting up perl (5.38.2-4) ...
262s Setting up gir1.2-girepository-2.0:ppc64el (1.80.1-3) ...
262s Setting up libdpkg-perl (1.22.6ubuntu10) ...
262s Setting up libc6-dev:ppc64el (2.39-0ubuntu8.1) ...
262s Setting up initramfs-tools-core (0.142ubuntu27) ...
262s Setting up libclang-cpp18 (1:18.1.6-1) ...
262s Setting up ubuntu-pro-client (32.1) ...
262s Installing new version of config file /etc/apparmor.d/ubuntu_pro_apt_news ...
264s Setting up fwupd (1.9.20-1) ...
265s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
265s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
265s fwupd.service is a disabled or a static unit not running, not starting it.
265s Setting up ubuntu-pro-client-l10n (32.1) ...
265s Setting up initramfs-tools (0.142ubuntu27) ...
265s update-initramfs: deferring update (trigger activated)
265s Setting up dpkg-dev (1.22.6ubuntu10) ...
265s Setting up apport-core-dump-handler (2.28.1-0ubuntu4) ...
266s Setting up apport (2.28.1-0ubuntu4) ...
266s Installing new version of config file /etc/apport/crashdb.conf ...
267s apport-autoreport.service is a disabled or a static unit not running, not starting it.
267s Processing triggers for dbus (1.14.10-4ubuntu4) ...
267s Processing triggers for install-info (7.1-3build2) ...
267s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
267s Processing triggers for initramfs-tools (0.142ubuntu27) ...
267s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic
267s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
274s Reading package lists...
275s Building dependency tree...
275s Reading state information...
275s The following packages will be REMOVED:
275s   libatm1t64*
275s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
275s After this operation, 136 kB disk space will be freed.
275s (Reading database ... 
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(Reading database ... 72612 files and directories currently installed.)
275s Removing libatm1t64:ppc64el (1:2.5.1-5.1build1) ...
275s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
276s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
276s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
276s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
276s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
277s Reading package lists...
277s Reading package lists...
277s Building dependency tree...
277s Reading state information...
278s Calculating upgrade...
278s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
278s Reading package lists...
278s Building dependency tree...
278s Reading state information...
278s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
278s autopkgtest [09:31:25]: rebooting testbed after setup commands that affected boot
312s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
326s autopkgtest [09:32:13]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024
329s autopkgtest [09:32:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sf
331s Get:1 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (dsc) [2673 B]
331s Get:2 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (tar) [1972 kB]
331s Get:3 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (diff) [5052 B]
331s gpgv: Signature made Tue May  7 12:22:49 2024 UTC
331s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
331s gpgv:                issuer "tille@debian.org"
331s gpgv: Can't check signature: No public key
331s dpkg-source: warning: cannot verify inline signature for ./r-cran-sf_1.0-16+dfsg-1.dsc: no acceptable signature found
332s autopkgtest [09:32:19]: testing package r-cran-sf version 1.0-16+dfsg-1
332s autopkgtest [09:32:19]: build not needed
334s autopkgtest [09:32:21]: test run-unit-test: preparing testbed
335s Reading package lists...
335s Building dependency tree...
335s Reading state information...
335s Starting pkgProblemResolver with broken count: 0
335s Starting 2 pkgProblemResolver with broken count: 0
335s Done
336s The following additional packages will be installed:
336s   fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax
336s   gdal-data gdal-plugins javascript-common libaec0 libarmadillo12
336s   libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1
336s   libfreexl1 libfyba0t64 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64
336s   libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b
336s   libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libice6 libjs-bootstrap
336s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
336s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
336s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
336s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
336s   libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 libltdl7
336s   libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2
336s   libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
336s   libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25
336s   libqhull-r8.0 librttopo1 libsm6 libsnappy1v5 libspatialite8t64 libsuperlu6
336s   libsz2 libtcl8.6 libthai-data libthai0 libtk8.6 libudunits2-0
336s   libudunits2-data liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64
336s   libxft2 libxrender1 libxss1 libxt6t64 littler mysql-common
336s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
336s   proj-data r-base-core r-cran-abind r-cran-askpass r-cran-base64enc
336s   r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem
336s   r-cran-callr r-cran-class r-cran-classint r-cran-cli r-cran-colorspace
336s   r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl
336s   r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest
336s   r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver
336s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2
336s   r-cran-glue r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools
336s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
336s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice
336s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom
336s   r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise
336s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nanoarrow r-cran-nlme
336s   r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
336s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise
336s   r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr
336s   r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp
336s   r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart
336s   r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass
336s   r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
336s   r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore
336s   r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model
336s   r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils
336s   r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
336s   r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr
336s   r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs
336s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun
336s   r-cran-xtable r-cran-yaml unixodbc-common unzip x11-common xdg-utils zip
336s Suggested packages:
336s   apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg
336s   libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs fonts-mathjax-extras
336s   fonts-stix libjs-mathjax-doc liblcms2-utils odbc-postgresql tdsodbc ogdi-bin
336s   proj-bin tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex
336s   texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf
336s   librsvg2-bin groff ghc php python ruby libjs-katex
336s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
336s   r-base-html r-cran-roxygen2 r-cran-ff r-cran-kernlab r-cran-mvtnorm
336s   r-cran-vcd r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis
336s   r-cran-rstudioapi r-cran-rmysql r-cran-magick r-cran-getopt r-cran-mapproj
336s   r-cran-mapdata r-cran-formattable r-cran-nanotime r-cran-palmerpenguins
336s   r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-spelling
336s   r-cran-bench r-cran-here r-cran-hms r-cran-plm r-cran-zoo
336s Recommended packages:
336s   proj-bin node-jquery poppler-data r-recommended r-base-dev r-doc-html
336s   r-cran-future r-cran-thematic r-cran-mockery r-cran-spelling r-cran-spdata
336s   r-cran-tinytest r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami
336s   r-cran-xml2 r-cran-dt r-cran-bench r-cran-decor r-cran-lobstr
336s   r-cran-progress r-cran-webutils r-cran-gh r-cran-broom r-cran-dbplyr
336s   r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-hexbin r-cran-hmisc
336s   r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
336s   r-cran-svglite r-cran-vdiffr r-cran-markdown r-cran-testit r-cran-cairo
336s   r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp r-cran-codetools
336s   r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl
336s   r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr
336s   r-cran-tidyverse r-cran-geosphere r-cran-hms r-cran-sodium
336s   r-cran-future.apply r-cran-lubridate r-cran-bitops r-cran-mathjaxr
336s   r-cran-mockr r-cran-remotes r-cran-webfakes r-cran-cba r-cran-pingr
336s   r-cran-ncdf4 r-cran-igraph r-cran-gstat r-cran-fields r-cran-exactextractr
336s   r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit
336s   r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat r-cran-sm
336s   r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv r-cran-glmnet
336s   r-cran-pcict r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-fnn
336s   r-cran-ggforce r-cran-ggthemes r-cran-mapdata r-cran-ncdfgeom r-cran-ncmeta
336s   r-cran-plm r-cran-randomforest r-cran-spacetime r-cran-viridis r-cran-xts
336s   r-cran-zoo r-cran-xml r-cran-data.table r-cran-formattable r-cran-pkgdown
336s   r-cran-zeallot r-cran-renv r-cran-runit libfile-mimeinfo-perl
336s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
336s The following NEW packages will be installed:
336s   autopkgtest-satdep fontconfig fonts-font-awesome fonts-glyphicons-halflings
336s   fonts-mathjax gdal-data gdal-plugins javascript-common libaec0
336s   libarmadillo12 libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64
336s   libdatrie1 libfreexl1 libfyba0t64 libgdal34t64 libgeos-c1t64
336s   libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3
336s   libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 libice6
336s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
336s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
336s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
336s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
336s   libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64
336s   libkmlengine1t64 liblapack3 liblcms2-2 libltdl7 libminizip1t64
336s   libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1
336s   libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
336s   libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25
336s   libqhull-r8.0 librttopo1 libsm6 libsnappy1v5 libspatialite8t64 libsuperlu6
336s   libsz2 libtcl8.6 libthai-data libthai0 libtk8.6 libudunits2-0
336s   libudunits2-data liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64
336s   libxft2 libxrender1 libxss1 libxt6t64 littler mysql-common
336s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
336s   proj-data r-base-core r-cran-abind r-cran-askpass r-cran-base64enc
336s   r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem
336s   r-cran-callr r-cran-class r-cran-classint r-cran-cli r-cran-colorspace
336s   r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl
336s   r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest
336s   r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver
336s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2
336s   r-cran-glue r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools
336s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
336s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice
336s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom
336s   r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise
336s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nanoarrow r-cran-nlme
336s   r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
336s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise
336s   r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr
336s   r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp
336s   r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart
336s   r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass
336s   r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
336s   r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore
336s   r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model
336s   r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils
336s   r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
336s   r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr
336s   r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs
336s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun
336s   r-cran-xtable r-cran-yaml unixodbc-common unzip x11-common xdg-utils zip
336s 0 upgraded, 234 newly installed, 0 to remove and 0 not upgraded.
336s Need to get 222 MB/222 MB of archives.
336s After this operation, 692 MB of additional disk space will be used.
336s Get:1 /tmp/autopkgtest.fT8P19/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [920 B]
336s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB]
336s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
336s Get:4 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
336s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
337s Get:6 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gdal-data all 3.8.5+dfsg-1 [261 kB]
337s Get:7 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gdal-plugins ppc64el 3.8.5+dfsg-1 [24.6 kB]
337s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el javascript-common all 11+nmu1 [5936 B]
337s Get:9 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB]
337s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB]
337s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB]
337s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB]
338s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libarpack2t64 ppc64el 3.9.1-1.1build2 [107 kB]
338s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsuperlu6 ppc64el 6.0.1+dfsg1-1build1 [238 kB]
338s Get:15 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libarmadillo12 ppc64el 1:12.8.2+dfsg-1 [110 kB]
338s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsnappy1v5 ppc64el 1.2.1-1 [33.4 kB]
338s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libblosc1 ppc64el 1.21.5+ds-1build1 [38.5 kB]
338s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB]
338s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
338s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
338s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
338s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB]
338s Get:23 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libcfitsio10t64 ppc64el 4.3.1-1.1build2 [713 kB]
338s Get:24 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
338s Get:25 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libfyba0t64 ppc64el 4.1.1-11build1 [148 kB]
338s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libminizip1t64 ppc64el 1:1.3.dfsg-3.1ubuntu2 [25.5 kB]
338s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libfreexl1 ppc64el 2.0.0-1build2 [53.1 kB]
338s Get:28 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeos3.12.1t64 ppc64el 3.12.1-3build1 [1010 kB]
338s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeos-c1t64 ppc64el 3.12.1-3build1 [107 kB]
338s Get:30 http://ftpmaster.internal/ubuntu oracular/universe ppc64el proj-data all 9.4.0-1build2 [7885 kB]
339s Get:31 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libproj25 ppc64el 9.4.0-1build2 [1485 kB]
339s Get:32 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeotiff5 ppc64el 1.7.1-5build1 [65.5 kB]
339s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgif7 ppc64el 5.2.2-1ubuntu1 [41.2 kB]
339s Get:34 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B]
339s Get:35 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf4-0-alt ppc64el 4.3.0-1 [337 kB]
339s Get:36 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu4 [1395 kB]
340s Get:37 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liburiparser1 ppc64el 0.9.7+dfsg-2build1 [53.6 kB]
340s Get:38 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmlbase1t64 ppc64el 1.3.0-12build1 [59.5 kB]
340s Get:39 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmldom1t64 ppc64el 1.3.0-12build1 [168 kB]
340s Get:40 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmlengine1t64 ppc64el 1.3.0-12build1 [78.0 kB]
340s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el mysql-common all 5.8+1.1.0build1 [6746 B]
340s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el libmysqlclient21 ppc64el 8.0.37-1 [1296 kB]
340s Get:43 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu4 [70.9 kB]
340s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-5ubuntu4 [601 kB]
340s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libltdl7 ppc64el 2.4.7-7build1 [48.2 kB]
340s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el libodbc2 ppc64el 2.3.12-1build2 [188 kB]
340s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el unixodbc-common all 2.3.12-1build2 [8646 B]
340s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el libodbcinst2 ppc64el 2.3.12-1build2 [37.2 kB]
340s Get:49 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libogdi4.1 ppc64el 4.1.1+ds-4 [256 kB]
340s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB]
340s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB]
340s Get:52 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpoppler134 ppc64el 24.02.0-1ubuntu9 [1341 kB]
340s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpq5 ppc64el 16.2-1ubuntu4 [170 kB]
340s Get:54 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
340s Get:55 http://ftpmaster.internal/ubuntu oracular/universe ppc64el librttopo1 ppc64el 1.1.0-3build2 [240 kB]
340s Get:56 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libspatialite8t64 ppc64el 5.1.0-3build1 [2233 kB]
341s Get:57 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libxerces-c3.2t64 ppc64el 3.2.4+debian-1.3 [1060 kB]
341s Get:58 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgdal34t64 ppc64el 3.8.5+dfsg-1 [9740 kB]
342s Get:59 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB]
342s Get:60 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB]
342s Get:61 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB]
342s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
342s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB]
342s Get:64 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
342s Get:65 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
342s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
342s Get:67 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB]
342s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB]
343s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
343s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
344s Get:71 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
344s Get:72 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
344s Get:73 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
344s Get:74 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
344s Get:75 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
344s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
344s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
344s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
344s Get:79 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
344s Get:80 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpango-1.0-0 ppc64el 1.52.2+ds-1 [273 kB]
344s Get:81 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.2+ds-1 [49.8 kB]
344s Get:82 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.2+ds-1 [30.5 kB]
344s Get:83 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB]
344s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B]
344s Get:85 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB]
344s Get:86 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB]
344s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
344s Get:88 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
344s Get:89 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB]
344s Get:90 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libudunits2-data all 2.2.28-7build1 [19.4 kB]
344s Get:91 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libudunits2-0 ppc64el 2.2.28-7build1 [67.5 kB]
344s Get:92 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
344s Get:93 http://ftpmaster.internal/ubuntu oracular/main ppc64el zip ppc64el 3.0-13build1 [198 kB]
344s Get:94 http://ftpmaster.internal/ubuntu oracular/main ppc64el unzip ppc64el 6.0-28ubuntu4 [192 kB]
344s Get:95 http://ftpmaster.internal/ubuntu oracular/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
344s Get:96 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-base-core ppc64el 4.4.0-2 [28.9 MB]
347s Get:97 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-littler ppc64el 0.3.20-1 [97.4 kB]
348s Get:98 http://ftpmaster.internal/ubuntu oracular/universe ppc64el littler all 0.3.20-1 [2486 B]
348s Get:99 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB]
348s Get:100 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
348s Get:101 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB]
348s Get:102 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc-data all 3.1.3-2build2 [78.3 kB]
348s Get:103 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc ppc64el 3.1.3+ds-3build1 [22.5 MB]
353s Get:104 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB]
353s Get:105 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB]
353s Get:106 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB]
353s Get:107 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB]
353s Get:108 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB]
353s Get:109 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB]
353s Get:110 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB]
353s Get:111 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB]
354s Get:112 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB]
354s Get:113 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
354s Get:114 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB]
354s Get:115 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB]
354s Get:116 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-brio ppc64el 1.1.5-1 [39.1 kB]
354s Get:117 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB]
354s Get:118 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB]
354s Get:119 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-digest ppc64el 0.6.35-1 [220 kB]
354s Get:120 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltools ppc64el 0.5.8.1-1 [373 kB]
354s Get:121 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
355s Get:122 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB]
355s Get:123 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB]
355s Get:124 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB]
355s Get:125 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1build2 [232 kB]
355s Get:126 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB]
355s Get:127 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB]
355s Get:128 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sass ppc64el 0.4.9+dfsg-1 [1034 kB]
355s Get:129 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
356s Get:130 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-ps ppc64el 1.7.6-1 [317 kB]
356s Get:131 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-processx ppc64el 3.8.3-1 [351 kB]
356s Get:132 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-callr all 3.7.6-1 [458 kB]
356s Get:133 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mass ppc64el 7.3-60.0.1-1 [1126 kB]
356s Get:134 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-class ppc64el 7.3-22-2build1 [92.5 kB]
356s Get:135 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-proxy ppc64el 0.4-27-1 [185 kB]
356s Get:136 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-e1071 ppc64el 1.7-14-1 [573 kB]
356s Get:137 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-kernsmooth ppc64el 2.23-24-1 [96.3 kB]
356s Get:138 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-classint ppc64el 0.4-10+dfsg-1 [106 kB]
357s Get:139 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-colorspace ppc64el 2.1-0+dfsg-1 [1542 kB]
357s Get:140 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB]
357s Get:141 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lazyeval ppc64el 0.2.2-1build1 [144 kB]
357s Get:142 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rex all 1.2.1-1 [129 kB]
357s Get:143 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-curl ppc64el 5.2.0+dfsg-1build2 [179 kB]
357s Get:144 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2build2 [406 kB]
357s Get:145 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB]
357s Get:146 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB]
357s Get:147 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB]
358s Get:148 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-yaml ppc64el 2.3.8-2 [122 kB]
358s Get:149 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-covr ppc64el 3.6.4+dfsg-1 [302 kB]
358s Get:150 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB]
358s Get:151 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB]
358s Get:152 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-deldir ppc64el 2.0-4-1build1 [273 kB]
358s Get:153 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-desc all 1.4.3-1 [359 kB]
358s Get:154 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-diffobj ppc64el 0.3.5-1 [1118 kB]
358s Get:155 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB]
358s Get:156 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB]
358s Get:157 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB]
359s Get:158 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB]
359s Get:159 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
359s Get:160 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
359s Get:161 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB]
359s Get:162 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyselect ppc64el 1.2.0+dfsg-1 [218 kB]
359s Get:163 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB]
359s Get:164 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-evaluate all 0.23-1 [90.2 kB]
359s Get:165 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-farver ppc64el 2.1.1-2 [1385 kB]
360s Get:166 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB]
360s Get:167 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
360s Get:168 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-isoband ppc64el 0.2.7-1 [1486 kB]
360s Get:169 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB]
360s Get:170 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nlme ppc64el 3.1.164-1build1 [2278 kB]
361s Get:171 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrix ppc64el 1.6-5-1 [4057 kB]
361s Get:172 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mgcv ppc64el 1.9-1-1 [3393 kB]
361s Get:173 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-labeling all 0.4.3-1 [62.1 kB]
361s Get:174 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-munsell all 0.5.0-2build1 [208 kB]
361s Get:175 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
361s Get:176 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB]
362s Get:177 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-scales all 1.3.0-1 [603 kB]
362s Get:178 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
362s Get:179 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-goftest ppc64el 1.2-3-1 [60.2 kB]
362s Get:180 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xfun ppc64el 0.44+dfsg-1 [516 kB]
362s Get:181 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-highr all 0.10+dfsg-2 [38.5 kB]
362s Get:182 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
362s Get:183 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB]
363s Get:184 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB]
363s Get:185 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-promises ppc64el 1.3.0+dfsg-1 [289 kB]
363s Get:186 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httpuv ppc64el 1.6.15+dfsg-1 [521 kB]
363s Get:187 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
363s Get:188 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-knitr all 1.46+dfsg-1 [911 kB]
364s Get:189 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-units ppc64el 0.8-5+dfsg-1 [275 kB]
364s Get:190 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-wk ppc64el 0.9.1-1 [1858 kB]
364s Get:191 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-s2 ppc64el 1.1.6-1build2 [2178 kB]
364s Get:192 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sf ppc64el 1.0-16+dfsg-1 [3064 kB]
365s Get:193 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lwgeom ppc64el 0.2-13-3build2 [477 kB]
365s Get:194 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-maps ppc64el 3.4.2-1 [2366 kB]
365s Get:195 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nanoarrow ppc64el 0.4.0-1 [303 kB]
365s Get:196 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pbapply all 1.7-2-1 [102 kB]
365s Get:197 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgbuild all 1.4.3-1 [209 kB]
365s Get:198 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rprojroot all 2.0.4-1 [124 kB]
366s Get:199 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgload all 1.3.4-1 [207 kB]
366s Get:200 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB]
366s Get:201 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-polyclip ppc64el 1.10-6-1 [121 kB]
366s Get:202 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-praise all 1.0.0-4build1 [20.3 kB]
366s Get:203 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB]
366s Get:204 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sp ppc64el 1:2.1-2+dfsg-1 [1451 kB]
366s Get:205 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-terra ppc64el 1.7-65-1build2 [3814 kB]
367s Get:206 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-raster ppc64el 3.6-26-1 [3121 kB]
367s Get:207 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
367s Get:208 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB]
367s Get:209 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB]
367s Get:210 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tinytex all 0.49-1 [141 kB]
367s Get:211 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-modernizr all 3.13.0-0.1 [101 kB]
367s Get:212 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB]
367s Get:213 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB]
367s Get:214 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
368s Get:215 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
368s Get:216 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
368s Get:217 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-survival ppc64el 3.5-8-1 [6160 kB]
368s Get:218 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpart ppc64el 4.1.23-1build1 [673 kB]
369s Get:219 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpostgresql ppc64el 0.7-6+dfsg-1 [378 kB]
369s Get:220 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rsqlite ppc64el 2.3.4-1 [1777 kB]
369s Get:221 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.utils ppc64el 3.0-4-1 [362 kB]
369s Get:222 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.data all 3.0-4-1 [4090 kB]
369s Get:223 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.geom ppc64el 3.2-9-1 [3983 kB]
369s Get:224 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.random ppc64el 3.2-3-1 [1174 kB]
370s Get:225 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tensor all 1.5-4 [15.7 kB]
370s Get:226 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.sparse ppc64el 3.0-3-1 [219 kB]
370s Get:227 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.explore ppc64el 3.2-5-1 [3294 kB]
370s Get:228 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.model ppc64el 3.2-11-1 [3384 kB]
370s Get:229 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.linnet ppc64el 3.1-5-1 [1476 kB]
370s Get:230 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat ppc64el 3.0-7-1 [3817 kB]
370s Get:231 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stars all 0.6-4-1 [4030 kB]
371s Get:232 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-waldo all 0.5.2-1build1 [120 kB]
371s Get:233 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-testthat ppc64el 3.2.1-1 [1693 kB]
371s Get:234 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB]
371s Preconfiguring packages ...
371s Fetched 222 MB in 35s (6353 kB/s)
371s Selecting previously unselected package fontconfig.
371s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 72606 files and directories currently installed.)
371s Preparing to unpack .../000-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ...
371s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
371s Selecting previously unselected package fonts-font-awesome.
371s Preparing to unpack .../001-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
371s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
372s Selecting previously unselected package fonts-glyphicons-halflings.
372s Preparing to unpack .../002-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
372s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
372s Selecting previously unselected package fonts-mathjax.
372s Preparing to unpack .../003-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
372s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
372s Selecting previously unselected package gdal-data.
372s Preparing to unpack .../004-gdal-data_3.8.5+dfsg-1_all.deb ...
372s Unpacking gdal-data (3.8.5+dfsg-1) ...
372s Selecting previously unselected package gdal-plugins:ppc64el.
372s Preparing to unpack .../005-gdal-plugins_3.8.5+dfsg-1_ppc64el.deb ...
372s Unpacking gdal-plugins:ppc64el (3.8.5+dfsg-1) ...
372s Selecting previously unselected package javascript-common.
372s Preparing to unpack .../006-javascript-common_11+nmu1_all.deb ...
372s Unpacking javascript-common (11+nmu1) ...
372s Selecting previously unselected package libaec0:ppc64el.
372s Preparing to unpack .../007-libaec0_1.1.3-1_ppc64el.deb ...
372s Unpacking libaec0:ppc64el (1.1.3-1) ...
372s Selecting previously unselected package libblas3:ppc64el.
372s Preparing to unpack .../008-libblas3_3.12.0-3build1_ppc64el.deb ...
372s Unpacking libblas3:ppc64el (3.12.0-3build1) ...
372s Selecting previously unselected package libgfortran5:ppc64el.
372s Preparing to unpack .../009-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ...
372s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ...
372s Selecting previously unselected package liblapack3:ppc64el.
372s Preparing to unpack .../010-liblapack3_3.12.0-3build1_ppc64el.deb ...
372s Unpacking liblapack3:ppc64el (3.12.0-3build1) ...
372s Selecting previously unselected package libarpack2t64:ppc64el.
372s Preparing to unpack .../011-libarpack2t64_3.9.1-1.1build2_ppc64el.deb ...
372s Unpacking libarpack2t64:ppc64el (3.9.1-1.1build2) ...
372s Selecting previously unselected package libsuperlu6:ppc64el.
372s Preparing to unpack .../012-libsuperlu6_6.0.1+dfsg1-1build1_ppc64el.deb ...
372s Unpacking libsuperlu6:ppc64el (6.0.1+dfsg1-1build1) ...
372s Selecting previously unselected package libarmadillo12.
372s Preparing to unpack .../013-libarmadillo12_1%3a12.8.2+dfsg-1_ppc64el.deb ...
372s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ...
372s Selecting previously unselected package libsnappy1v5:ppc64el.
372s Preparing to unpack .../014-libsnappy1v5_1.2.1-1_ppc64el.deb ...
372s Unpacking libsnappy1v5:ppc64el (1.2.1-1) ...
372s Selecting previously unselected package libblosc1:ppc64el.
372s Preparing to unpack .../015-libblosc1_1.21.5+ds-1build1_ppc64el.deb ...
372s Unpacking libblosc1:ppc64el (1.21.5+ds-1build1) ...
372s Selecting previously unselected package libpixman-1-0:ppc64el.
372s Preparing to unpack .../016-libpixman-1-0_0.42.2-1build1_ppc64el.deb ...
372s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ...
372s Selecting previously unselected package libxcb-render0:ppc64el.
372s Preparing to unpack .../017-libxcb-render0_1.17.0-2_ppc64el.deb ...
372s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
372s Selecting previously unselected package libxcb-shm0:ppc64el.
372s Preparing to unpack .../018-libxcb-shm0_1.17.0-2_ppc64el.deb ...
372s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
372s Selecting previously unselected package libxrender1:ppc64el.
372s Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
372s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
372s Selecting previously unselected package libcairo2:ppc64el.
372s Preparing to unpack .../020-libcairo2_1.18.0-3build1_ppc64el.deb ...
372s Unpacking libcairo2:ppc64el (1.18.0-3build1) ...
372s Selecting previously unselected package libcfitsio10t64:ppc64el.
372s Preparing to unpack .../021-libcfitsio10t64_4.3.1-1.1build2_ppc64el.deb ...
372s Unpacking libcfitsio10t64:ppc64el (4.3.1-1.1build2) ...
372s Selecting previously unselected package libdatrie1:ppc64el.
372s Preparing to unpack .../022-libdatrie1_0.2.13-3build1_ppc64el.deb ...
372s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ...
372s Selecting previously unselected package libfyba0t64:ppc64el.
372s Preparing to unpack .../023-libfyba0t64_4.1.1-11build1_ppc64el.deb ...
372s Unpacking libfyba0t64:ppc64el (4.1.1-11build1) ...
372s Selecting previously unselected package libminizip1t64:ppc64el.
372s Preparing to unpack .../024-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ...
372s Unpacking libminizip1t64:ppc64el (1:1.3.dfsg-3.1ubuntu2) ...
372s Selecting previously unselected package libfreexl1:ppc64el.
372s Preparing to unpack .../025-libfreexl1_2.0.0-1build2_ppc64el.deb ...
372s Unpacking libfreexl1:ppc64el (2.0.0-1build2) ...
372s Selecting previously unselected package libgeos3.12.1t64:ppc64el.
372s Preparing to unpack .../026-libgeos3.12.1t64_3.12.1-3build1_ppc64el.deb ...
372s Unpacking libgeos3.12.1t64:ppc64el (3.12.1-3build1) ...
372s Selecting previously unselected package libgeos-c1t64:ppc64el.
372s Preparing to unpack .../027-libgeos-c1t64_3.12.1-3build1_ppc64el.deb ...
372s Unpacking libgeos-c1t64:ppc64el (3.12.1-3build1) ...
372s Selecting previously unselected package proj-data.
372s Preparing to unpack .../028-proj-data_9.4.0-1build2_all.deb ...
372s Unpacking proj-data (9.4.0-1build2) ...
372s Selecting previously unselected package libproj25:ppc64el.
372s Preparing to unpack .../029-libproj25_9.4.0-1build2_ppc64el.deb ...
372s Unpacking libproj25:ppc64el (9.4.0-1build2) ...
372s Selecting previously unselected package libgeotiff5:ppc64el.
372s Preparing to unpack .../030-libgeotiff5_1.7.1-5build1_ppc64el.deb ...
372s Unpacking libgeotiff5:ppc64el (1.7.1-5build1) ...
373s Selecting previously unselected package libgif7:ppc64el.
373s Preparing to unpack .../031-libgif7_5.2.2-1ubuntu1_ppc64el.deb ...
373s Unpacking libgif7:ppc64el (5.2.2-1ubuntu1) ...
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376s Selecting previously unselected package r-cran-abind.
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377s Selecting previously unselected package r-cran-mass.
377s Preparing to unpack .../131-r-cran-mass_7.3-60.0.1-1_ppc64el.deb ...
377s Unpacking r-cran-mass (7.3-60.0.1-1) ...
377s Selecting previously unselected package r-cran-class.
377s Preparing to unpack .../132-r-cran-class_7.3-22-2build1_ppc64el.deb ...
377s Unpacking r-cran-class (7.3-22-2build1) ...
377s Selecting previously unselected package r-cran-proxy.
377s Preparing to unpack .../133-r-cran-proxy_0.4-27-1_ppc64el.deb ...
377s Unpacking r-cran-proxy (0.4-27-1) ...
377s Selecting previously unselected package r-cran-e1071.
377s Preparing to unpack .../134-r-cran-e1071_1.7-14-1_ppc64el.deb ...
377s Unpacking r-cran-e1071 (1.7-14-1) ...
377s Selecting previously unselected package r-cran-kernsmooth.
377s Preparing to unpack .../135-r-cran-kernsmooth_2.23-24-1_ppc64el.deb ...
377s Unpacking r-cran-kernsmooth (2.23-24-1) ...
377s Selecting previously unselected package r-cran-classint.
377s Preparing to unpack .../136-r-cran-classint_0.4-10+dfsg-1_ppc64el.deb ...
377s Unpacking r-cran-classint (0.4-10+dfsg-1) ...
377s Selecting previously unselected package r-cran-colorspace.
377s Preparing to unpack .../137-r-cran-colorspace_2.1-0+dfsg-1_ppc64el.deb ...
377s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
377s Selecting previously unselected package r-cran-commonmark.
377s Preparing to unpack .../138-r-cran-commonmark_1.9.1-1_ppc64el.deb ...
377s Unpacking r-cran-commonmark (1.9.1-1) ...
377s Selecting previously unselected package r-cran-lazyeval.
377s Preparing to unpack .../139-r-cran-lazyeval_0.2.2-1build1_ppc64el.deb ...
377s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
377s Selecting previously unselected package r-cran-rex.
377s Preparing to unpack .../140-r-cran-rex_1.2.1-1_all.deb ...
377s Unpacking r-cran-rex (1.2.1-1) ...
377s Selecting previously unselected package r-cran-curl.
377s Preparing to unpack .../141-r-cran-curl_5.2.0+dfsg-1build2_ppc64el.deb ...
377s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ...
377s Selecting previously unselected package r-cran-openssl.
377s Preparing to unpack .../142-r-cran-openssl_2.1.1+dfsg-2build2_ppc64el.deb ...
377s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ...
377s Selecting previously unselected package r-cran-httr.
378s Preparing to unpack .../143-r-cran-httr_1.4.7+dfsg-1_all.deb ...
378s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
378s Selecting previously unselected package r-cran-crayon.
378s Preparing to unpack .../144-r-cran-crayon_1.5.2-1_all.deb ...
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378s Selecting previously unselected package r-cran-withr.
378s Preparing to unpack .../145-r-cran-withr_2.5.0-1_all.deb ...
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378s Selecting previously unselected package r-cran-yaml.
378s Preparing to unpack .../146-r-cran-yaml_2.3.8-2_ppc64el.deb ...
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378s Selecting previously unselected package r-cran-covr.
378s Preparing to unpack .../147-r-cran-covr_3.6.4+dfsg-1_ppc64el.deb ...
378s Unpacking r-cran-covr (3.6.4+dfsg-1) ...
378s Selecting previously unselected package r-cran-cpp11.
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378s Selecting previously unselected package r-cran-dbi.
378s Preparing to unpack .../149-r-cran-dbi_1.2.2-1_all.deb ...
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378s Selecting previously unselected package r-cran-deldir.
378s Preparing to unpack .../150-r-cran-deldir_2.0-4-1build1_ppc64el.deb ...
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378s Selecting previously unselected package r-cran-desc.
378s Preparing to unpack .../151-r-cran-desc_1.4.3-1_all.deb ...
378s Unpacking r-cran-desc (1.4.3-1) ...
378s Selecting previously unselected package r-cran-diffobj.
378s Preparing to unpack .../152-r-cran-diffobj_0.3.5-1_ppc64el.deb ...
378s Unpacking r-cran-diffobj (0.3.5-1) ...
378s Selecting previously unselected package r-cran-generics.
378s Preparing to unpack .../153-r-cran-generics_0.1.3-1_all.deb ...
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378s Selecting previously unselected package r-cran-magrittr.
378s Preparing to unpack .../154-r-cran-magrittr_2.0.3-1_ppc64el.deb ...
378s Unpacking r-cran-magrittr (2.0.3-1) ...
378s Selecting previously unselected package r-cran-fansi.
378s Preparing to unpack .../155-r-cran-fansi_1.0.5-1_ppc64el.deb ...
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378s Selecting previously unselected package r-cran-utf8.
378s Preparing to unpack .../156-r-cran-utf8_1.2.4-1_ppc64el.deb ...
378s Unpacking r-cran-utf8 (1.2.4-1) ...
378s Selecting previously unselected package r-cran-pillar.
378s Preparing to unpack .../157-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
378s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
378s Selecting previously unselected package r-cran-pkgconfig.
378s Preparing to unpack .../158-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
378s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
378s Selecting previously unselected package r-cran-tibble.
378s Preparing to unpack .../159-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ...
378s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
378s Selecting previously unselected package r-cran-tidyselect.
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378s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
378s Selecting previously unselected package r-cran-dplyr.
378s Preparing to unpack .../161-r-cran-dplyr_1.1.4-1_ppc64el.deb ...
378s Unpacking r-cran-dplyr (1.1.4-1) ...
378s Selecting previously unselected package r-cran-evaluate.
378s Preparing to unpack .../162-r-cran-evaluate_0.23-1_all.deb ...
378s Unpacking r-cran-evaluate (0.23-1) ...
378s Selecting previously unselected package r-cran-farver.
378s Preparing to unpack .../163-r-cran-farver_2.1.1-2_ppc64el.deb ...
378s Unpacking r-cran-farver (2.1.1-2) ...
378s Selecting previously unselected package r-cran-fontawesome.
378s Preparing to unpack .../164-r-cran-fontawesome_0.5.2-1_all.deb ...
378s Unpacking r-cran-fontawesome (0.5.2-1) ...
378s Selecting previously unselected package r-cran-gtable.
378s Preparing to unpack .../165-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
378s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
378s Selecting previously unselected package r-cran-isoband.
378s Preparing to unpack .../166-r-cran-isoband_0.2.7-1_ppc64el.deb ...
378s Unpacking r-cran-isoband (0.2.7-1) ...
378s Selecting previously unselected package r-cran-lattice.
378s Preparing to unpack .../167-r-cran-lattice_0.22-6-1_ppc64el.deb ...
378s Unpacking r-cran-lattice (0.22-6-1) ...
378s Selecting previously unselected package r-cran-nlme.
378s Preparing to unpack .../168-r-cran-nlme_3.1.164-1build1_ppc64el.deb ...
378s Unpacking r-cran-nlme (3.1.164-1build1) ...
378s Selecting previously unselected package r-cran-matrix.
378s Preparing to unpack .../169-r-cran-matrix_1.6-5-1_ppc64el.deb ...
378s Unpacking r-cran-matrix (1.6-5-1) ...
378s Selecting previously unselected package r-cran-mgcv.
378s Preparing to unpack .../170-r-cran-mgcv_1.9-1-1_ppc64el.deb ...
378s Unpacking r-cran-mgcv (1.9-1-1) ...
378s Selecting previously unselected package r-cran-labeling.
378s Preparing to unpack .../171-r-cran-labeling_0.4.3-1_all.deb ...
378s Unpacking r-cran-labeling (0.4.3-1) ...
378s Selecting previously unselected package r-cran-munsell.
378s Preparing to unpack .../172-r-cran-munsell_0.5.0-2build1_all.deb ...
378s Unpacking r-cran-munsell (0.5.0-2build1) ...
379s Selecting previously unselected package r-cran-rcolorbrewer.
379s Preparing to unpack .../173-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
379s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
379s Selecting previously unselected package r-cran-viridislite.
379s Preparing to unpack .../174-r-cran-viridislite_0.4.2-2_all.deb ...
379s Unpacking r-cran-viridislite (0.4.2-2) ...
379s Selecting previously unselected package r-cran-scales.
379s Preparing to unpack .../175-r-cran-scales_1.3.0-1_all.deb ...
379s Unpacking r-cran-scales (1.3.0-1) ...
379s Selecting previously unselected package r-cran-ggplot2.
379s Preparing to unpack .../176-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
379s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
379s Selecting previously unselected package r-cran-goftest.
379s Preparing to unpack .../177-r-cran-goftest_1.2-3-1_ppc64el.deb ...
379s Unpacking r-cran-goftest (1.2-3-1) ...
379s Selecting previously unselected package r-cran-xfun.
379s Preparing to unpack .../178-r-cran-xfun_0.44+dfsg-1_ppc64el.deb ...
379s Unpacking r-cran-xfun (0.44+dfsg-1) ...
379s Selecting previously unselected package r-cran-highr.
379s Preparing to unpack .../179-r-cran-highr_0.10+dfsg-2_all.deb ...
379s Unpacking r-cran-highr (0.10+dfsg-2) ...
379s Selecting previously unselected package r-cran-pkgkitten.
379s Preparing to unpack .../180-r-cran-pkgkitten_0.2.3-1_all.deb ...
379s Unpacking r-cran-pkgkitten (0.2.3-1) ...
379s Selecting previously unselected package r-cran-rcpp.
379s Preparing to unpack .../181-r-cran-rcpp_1.0.12-1_ppc64el.deb ...
379s Unpacking r-cran-rcpp (1.0.12-1) ...
379s Selecting previously unselected package r-cran-later.
379s Preparing to unpack .../182-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ...
379s Unpacking r-cran-later (1.3.2+dfsg-1) ...
379s Selecting previously unselected package r-cran-promises.
379s Preparing to unpack .../183-r-cran-promises_1.3.0+dfsg-1_ppc64el.deb ...
379s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
379s Selecting previously unselected package r-cran-httpuv.
379s Preparing to unpack .../184-r-cran-httpuv_1.6.15+dfsg-1_ppc64el.deb ...
379s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
379s Selecting previously unselected package libjs-mathjax.
379s Preparing to unpack .../185-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
379s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
380s Selecting previously unselected package r-cran-knitr.
380s Preparing to unpack .../186-r-cran-knitr_1.46+dfsg-1_all.deb ...
380s Unpacking r-cran-knitr (1.46+dfsg-1) ...
380s Selecting previously unselected package r-cran-units.
380s Preparing to unpack .../187-r-cran-units_0.8-5+dfsg-1_ppc64el.deb ...
380s Unpacking r-cran-units (0.8-5+dfsg-1) ...
380s Selecting previously unselected package r-cran-wk.
380s Preparing to unpack .../188-r-cran-wk_0.9.1-1_ppc64el.deb ...
380s Unpacking r-cran-wk (0.9.1-1) ...
380s Selecting previously unselected package r-cran-s2.
380s Preparing to unpack .../189-r-cran-s2_1.1.6-1build2_ppc64el.deb ...
380s Unpacking r-cran-s2 (1.1.6-1build2) ...
380s Selecting previously unselected package r-cran-sf.
380s Preparing to unpack .../190-r-cran-sf_1.0-16+dfsg-1_ppc64el.deb ...
380s Unpacking r-cran-sf (1.0-16+dfsg-1) ...
381s Selecting previously unselected package r-cran-lwgeom.
381s Preparing to unpack .../191-r-cran-lwgeom_0.2-13-3build2_ppc64el.deb ...
381s Unpacking r-cran-lwgeom (0.2-13-3build2) ...
381s Selecting previously unselected package r-cran-maps.
381s Preparing to unpack .../192-r-cran-maps_3.4.2-1_ppc64el.deb ...
381s Unpacking r-cran-maps (3.4.2-1) ...
381s Selecting previously unselected package r-cran-nanoarrow.
381s Preparing to unpack .../193-r-cran-nanoarrow_0.4.0-1_ppc64el.deb ...
381s Unpacking r-cran-nanoarrow (0.4.0-1) ...
381s Selecting previously unselected package r-cran-pbapply.
381s Preparing to unpack .../194-r-cran-pbapply_1.7-2-1_all.deb ...
381s Unpacking r-cran-pbapply (1.7-2-1) ...
381s Selecting previously unselected package r-cran-pkgbuild.
381s Preparing to unpack .../195-r-cran-pkgbuild_1.4.3-1_all.deb ...
381s Unpacking r-cran-pkgbuild (1.4.3-1) ...
381s Selecting previously unselected package r-cran-rprojroot.
381s Preparing to unpack .../196-r-cran-rprojroot_2.0.4-1_all.deb ...
381s Unpacking r-cran-rprojroot (2.0.4-1) ...
381s Selecting previously unselected package r-cran-pkgload.
381s Preparing to unpack .../197-r-cran-pkgload_1.3.4-1_all.deb ...
381s Unpacking r-cran-pkgload (1.3.4-1) ...
381s Selecting previously unselected package r-cran-plogr.
381s Preparing to unpack .../198-r-cran-plogr_0.2.0-3build1_all.deb ...
381s Unpacking r-cran-plogr (0.2.0-3build1) ...
381s Selecting previously unselected package r-cran-polyclip.
381s Preparing to unpack .../199-r-cran-polyclip_1.10-6-1_ppc64el.deb ...
381s Unpacking r-cran-polyclip (1.10-6-1) ...
381s Selecting previously unselected package r-cran-praise.
381s Preparing to unpack .../200-r-cran-praise_1.0.0-4build1_all.deb ...
381s Unpacking r-cran-praise (1.0.0-4build1) ...
381s Selecting previously unselected package r-cran-purrr.
381s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_ppc64el.deb ...
381s Unpacking r-cran-purrr (1.0.2-1) ...
381s Selecting previously unselected package r-cran-sp.
381s Preparing to unpack .../202-r-cran-sp_1%3a2.1-2+dfsg-1_ppc64el.deb ...
381s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ...
381s Selecting previously unselected package r-cran-terra.
381s Preparing to unpack .../203-r-cran-terra_1.7-65-1build2_ppc64el.deb ...
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381s Selecting previously unselected package r-cran-raster.
381s Preparing to unpack .../204-r-cran-raster_3.6-26-1_ppc64el.deb ...
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381s Selecting previously unselected package r-cran-rematch2.
381s Preparing to unpack .../205-r-cran-rematch2_2.1.2-2build1_all.deb ...
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381s Selecting previously unselected package r-cran-stringi.
381s Preparing to unpack .../206-r-cran-stringi_1.8.3-1_ppc64el.deb ...
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381s Selecting previously unselected package r-cran-stringr.
381s Preparing to unpack .../207-r-cran-stringr_1.5.1-1_all.deb ...
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381s Selecting previously unselected package r-cran-tinytex.
381s Preparing to unpack .../208-r-cran-tinytex_0.49-1_all.deb ...
381s Unpacking r-cran-tinytex (0.49-1) ...
381s Selecting previously unselected package libjs-modernizr.
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381s Selecting previously unselected package r-cran-xtable.
381s Preparing to unpack .../210-r-cran-xtable_1%3a1.8-4-2_all.deb ...
381s Unpacking r-cran-xtable (1:1.8-4-2) ...
381s Selecting previously unselected package r-cran-sourcetools.
381s Preparing to unpack .../211-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ...
381s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
381s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
381s Preparing to unpack .../212-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
381s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
381s Selecting previously unselected package r-cran-shiny.
381s Preparing to unpack .../213-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ...
381s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ...
381s Selecting previously unselected package r-cran-rmarkdown.
381s Preparing to unpack .../214-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
381s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
381s Selecting previously unselected package r-cran-survival.
381s Preparing to unpack .../215-r-cran-survival_3.5-8-1_ppc64el.deb ...
381s Unpacking r-cran-survival (3.5-8-1) ...
382s Selecting previously unselected package r-cran-rpart.
382s Preparing to unpack .../216-r-cran-rpart_4.1.23-1build1_ppc64el.deb ...
382s Unpacking r-cran-rpart (4.1.23-1build1) ...
382s Selecting previously unselected package r-cran-rpostgresql.
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382s Unpacking r-cran-rpostgresql (0.7-6+dfsg-1) ...
382s Selecting previously unselected package r-cran-rsqlite.
382s Preparing to unpack .../218-r-cran-rsqlite_2.3.4-1_ppc64el.deb ...
382s Unpacking r-cran-rsqlite (2.3.4-1) ...
382s Selecting previously unselected package r-cran-spatstat.utils.
382s Preparing to unpack .../219-r-cran-spatstat.utils_3.0-4-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.utils (3.0-4-1) ...
382s Selecting previously unselected package r-cran-spatstat.data.
382s Preparing to unpack .../220-r-cran-spatstat.data_3.0-4-1_all.deb ...
382s Unpacking r-cran-spatstat.data (3.0-4-1) ...
382s Selecting previously unselected package r-cran-spatstat.geom.
382s Preparing to unpack .../221-r-cran-spatstat.geom_3.2-9-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.geom (3.2-9-1) ...
382s Selecting previously unselected package r-cran-spatstat.random.
382s Preparing to unpack .../222-r-cran-spatstat.random_3.2-3-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.random (3.2-3-1) ...
382s Selecting previously unselected package r-cran-tensor.
382s Preparing to unpack .../223-r-cran-tensor_1.5-4_all.deb ...
382s Unpacking r-cran-tensor (1.5-4) ...
382s Selecting previously unselected package r-cran-spatstat.sparse.
382s Preparing to unpack .../224-r-cran-spatstat.sparse_3.0-3-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.sparse (3.0-3-1) ...
382s Selecting previously unselected package r-cran-spatstat.explore.
382s Preparing to unpack .../225-r-cran-spatstat.explore_3.2-5-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.explore (3.2-5-1) ...
382s Selecting previously unselected package r-cran-spatstat.model.
382s Preparing to unpack .../226-r-cran-spatstat.model_3.2-11-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.model (3.2-11-1) ...
382s Selecting previously unselected package r-cran-spatstat.linnet.
382s Preparing to unpack .../227-r-cran-spatstat.linnet_3.1-5-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat.linnet (3.1-5-1) ...
382s Selecting previously unselected package r-cran-spatstat.
382s Preparing to unpack .../228-r-cran-spatstat_3.0-7-1_ppc64el.deb ...
382s Unpacking r-cran-spatstat (3.0-7-1) ...
382s Selecting previously unselected package r-cran-stars.
382s Preparing to unpack .../229-r-cran-stars_0.6-4-1_all.deb ...
382s Unpacking r-cran-stars (0.6-4-1) ...
382s Selecting previously unselected package r-cran-waldo.
382s Preparing to unpack .../230-r-cran-waldo_0.5.2-1build1_all.deb ...
382s Unpacking r-cran-waldo (0.5.2-1build1) ...
382s Selecting previously unselected package r-cran-testthat.
382s Preparing to unpack .../231-r-cran-testthat_3.2.1-1_ppc64el.deb ...
382s Unpacking r-cran-testthat (3.2.1-1) ...
382s Selecting previously unselected package r-cran-tidyr.
382s Preparing to unpack .../232-r-cran-tidyr_1.3.1-1_ppc64el.deb ...
382s Unpacking r-cran-tidyr (1.3.1-1) ...
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394s (Reading database ... 94004 files and directories currently installed.)
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395s autopkgtest [09:33:22]: test run-unit-test: [-----------------------
395s BEGIN TEST aggregate.R
395s 
395s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
395s Copyright (C) 2024 The R Foundation for Statistical Computing
395s Platform: powerpc64le-unknown-linux-gnu
395s 
395s R is free software and comes with ABSOLUTELY NO WARRANTY.
395s You are welcome to redistribute it under certain conditions.
395s Type 'license()' or 'licence()' for distribution details.
395s 
395s R is a collaborative project with many contributors.
395s Type 'contributors()' for more information and
395s 'citation()' on how to cite R or R packages in publications.
395s 
395s Type 'demo()' for some demos, 'help()' for on-line help, or
395s 'help.start()' for an HTML browser interface to help.
395s Type 'q()' to quit R.
395s 
395s > library(sf)
395s > # aggregate
395s > Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE
395s pl1 = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,0))))
395s > pl2 = st_polygon(list(rbind(c(0,0),c(1,1),c(0,1),c(0,0))))
395s > s = st_sf(a = 1:2, geom = st_sfc(pl1, pl2))
395s > (a = aggregate(s, list(c(1,1)), mean, do_union = FALSE))
395s Simple feature collection with 1 feature and 2 fields
395s Attribute-geometry relationships: aggregate (1), identity (1)
395s Geometry type: MULTIPOLYGON
395s Dimension:     XY
395s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
395s CRS:           NA
395s   Group.1   a                       geometry
395s 1       1 1.5 MULTIPOLYGON (((0 0, 1 0, 1...
395s > (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE))
395s Simple feature collection with 1 feature and 2 fields
395s Attribute-geometry relationships: aggregate (1), identity (1)
395s Geometry type: POLYGON
395s Dimension:     XY
395s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
395s CRS:           NA
395s   Group.1   a                       geometry
395s 1       1 1.5 POLYGON ((1 0, 0 0, 0 1, 1 ...
395s > # expect_warning(st_cast(a, "POINT"))
395s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
395s +  demo(meuse_sf, echo = FALSE, ask = FALSE)
395s +  a = aggregate(meuse_sf, list(meuse_sf$soil), mean)
395s +  print(attributes(a)$agr)
395s +  a = aggregate(meuse_sf, list(soil = meuse_sf$soil), mean)
395s +  print(attributes(a)$agr)
395s +  a = aggregate(meuse_sf, list(meuse_sf$soil, meuse_sf$ffreq), mean)
395s +  print(attributes(a)$agr)
395s +  a = aggregate(meuse_sf, list(soil = meuse_sf$soil, ff = meuse_sf$ffreq), mean)
395s +  print(attributes(a)$agr)
395s + }
396s   Group.1   cadmium    copper      lead      zinc      elev      dist        om 
396s  identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 
396s     ffreq      soil      lime   landuse    dist.m 
396s aggregate aggregate aggregate aggregate aggregate 
396s Levels: constant aggregate identity
396s      soil   cadmium    copper      lead      zinc      elev      dist        om 
396s  identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 
396s     ffreq    soil.1      lime   landuse    dist.m 
396s aggregate aggregate aggregate aggregate aggregate 
396s Levels: constant aggregate identity
396s   Group.1   Group.2   cadmium    copper      lead      zinc      elev      dist 
396s  identity  identity aggregate aggregate aggregate aggregate aggregate aggregate 
396s        om     ffreq      soil      lime   landuse    dist.m 
396s aggregate aggregate aggregate aggregate aggregate aggregate 
396s Levels: constant aggregate identity
396s      soil        ff   cadmium    copper      lead      zinc      elev      dist 
396s  identity  identity aggregate aggregate aggregate aggregate aggregate aggregate 
396s        om     ffreq    soil.1      lime   landuse    dist.m 
396s aggregate aggregate aggregate aggregate aggregate aggregate 
396s Levels: constant aggregate identity
396s > 
396s > # aggregate by sf/sfc
396s > a = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) * 2
396s > b = a + 1
396s > p = st_sfc(st_point(c(0.1,0.1)), st_point(c(1.5,1.5)), st_point(c(2.9,2.9)))
396s > x = st_sf(count = 1:3, geom = p)
396s > aggregate(x, st_sfc(a,b), mean)
396s Simple feature collection with 2 features and 1 field
396s Geometry type: POLYGON
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 3
396s CRS:           NA
396s   count                       geometry
396s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
396s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
396s > aggregate(x, st_sf(st_sfc(a,b)), mean)
396s Simple feature collection with 2 features and 1 field
396s Geometry type: POLYGON
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 3
396s CRS:           NA
396s   count                       geometry
396s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
396s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
396s > aggregate(x, st_sf(st_sfc(a,b,b+10)), mean)
396s Simple feature collection with 3 features and 1 field
396s Geometry type: POLYGON
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 13 ymax: 13
396s CRS:           NA
396s   count                       geometry
396s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
396s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
396s 3    NA POLYGON ((11 11, 13 11, 13 ...
396s > 
396s BEGIN TEST cast.R
396s There were 50 or more warnings (use warnings() to see the first 50)
396s 
396s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
396s Copyright (C) 2024 The R Foundation for Statistical Computing
396s Platform: powerpc64le-unknown-linux-gnu
396s 
396s R is free software and comes with ABSOLUTELY NO WARRANTY.
396s You are welcome to redistribute it under certain conditions.
396s Type 'license()' or 'licence()' for distribution details.
396s 
396s R is a collaborative project with many contributors.
396s Type 'contributors()' for more information and
396s 'citation()' on how to cite R or R packages in publications.
396s 
396s Type 'demo()' for some demos, 'help()' for on-line help, or
396s 'help.start()' for an HTML browser interface to help.
396s Type 'q()' to quit R.
396s 
396s > suppressPackageStartupMessages(library(sf))
396s > library(testthat)
396s > # "vertical" conversions:
396s > # column 1:
396s > mp = st_sfc(st_multipoint(matrix(0:3,,2)), st_multipoint(matrix(10:15,,2)))
396s > (ls = st_cast(mp, "LINESTRING"))
396s Geometry set for 2 features 
396s Geometry type: LINESTRING
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
396s CRS:           NA
396s LINESTRING (0 2, 1 3)
396s > LINESTRING (10 13, 11 14, 12 15)
396s st_cast(ls, "MULTIPOINT")
396s Geometry set for 2 features 
396s Geometry type: MULTIPOINT
396s MULTIPOINT ((0 2), (1 3))
396s MULTIPOINT ((10 13), (11 14), (12 15))
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
396s CRS:           NA
396s > 
396s > # column 2:
396s > mls = st_sfc(st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 
396s + 	rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 
396s + 	st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))))
396s > (pol = st_cast(mls, "POLYGON"))
396s Geometry set for 2 features 
396s Geometry type: POLYGON
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
396s CRS:           NA
396s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5...
396s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0))
396s > st_cast(pol, "MULTILINESTRING")
396s Geometry set for 2 features 
396s Geometry type: MULTILINESTRING
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
396s CRS:           NA
396s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10, 0 0),...
396s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1, 0 0))
396s > 
396s > # "horizontal" conversions:
396s > 
396s > (pt = st_cast(mp, "POINT"))
396s POINT (0 2)
396s POINT (1 3)
396s Geometry set for 5 features 
396s Geometry type: POINT
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
396s CRS:           NA
396s POINT (10 13)
396s POINT (11 14)
396s POINT (12 15)
396s MULTIPOINT ((0 2))
396s MULTIPOINT ((1 3))
396s MULTIPOINT ((10 13))
396s MULTIPOINT ((11 14))
396s MULTIPOINT ((12 15))
396s LINESTRING (0 0, 10 0, 10 10, 0 10)
396s LINESTRING (5 5, 5 6, 6 6, 6 5)
396s LINESTRING (0 0, 1 0, 1 1, 0 1)
396s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5...
396s > (i = attr(pt, "ids"))
396s [1] 2 3
396s > (xx = st_cast(pt, "MULTIPOINT", rep(seq_along(i), i)))
396s Geometry set for 5 features 
396s Geometry type: MULTIPOINT
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
396s CRS:           NA
396s > try(yy <- st_cast(pt, "LINESTRING", rep(seq_along(i), i)))
396s > 
396s > #(zz = st_cast(yy, "MULTILINESTRING"))
396s > #(zz = st_cast(yy, "POLYGON"))
396s > 
396s > st_cast(mls, "LINESTRING")
396s Geometry set for 3 features 
396s Geometry type: LINESTRING
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
396s CRS:           NA
396s > 
396s > (g = st_sfc(c(mls, ls)))
396s Geometry set for 4 features 
396s Geometry type: GEOMETRY
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
396s CRS:           NA
396s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1))
396s LINESTRING (0 2, 1 3)
396s LINESTRING (10 13, 11 14, 12 15)
396s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5...
396s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1))
396s MULTILINESTRING ((0 2, 1 3))
396s MULTILINESTRING ((10 13, 11 14, 12 15))
396s > st_cast(g, "MULTILINESTRING")
396s Geometry set for 4 features 
396s Geometry type: MULTILINESTRING
396s Dimension:     XY
396s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
396s CRS:           NA
396s > expect_warning(st_cast(g, "LINESTRING"))
397s > st_cast(st_cast(g, "MULTILINESTRING"), "LINESTRING") # will not loose
397s Geometry set for 5 features 
397s Geometry type: LINESTRING
397s Dimension:     XY
397s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
397s CRS:           NA
397s LINESTRING (0 0, 10 0, 10 10, 0 10)
397s LINESTRING (5 5, 5 6, 6 6, 6 5)
397s LINESTRING (0 0, 1 0, 1 1, 0 1)
397s LINESTRING (0 2, 1 3)
397s LINESTRING (10 13, 11 14, 12 15)
397s > 
397s > gc = st_sfc(st_geometrycollection(
397s +   list(
397s +     st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 
397s + 	rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 
397s + 	st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))),
397s + 	st_point(0:1)
397s +   )))
397s > try(st_cast(mls, "POINT"))
397s Geometry set for 12 features 
397s Geometry type: POINT
397s Dimension:     XY
397s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
397s CRS:           NA
397s First 5 geometries:
397s POINT (0 0)
397s POINT (10 0)
397s POINT (10 10)
397s POINT (0 10)
397s POINT (5 5)
397s > try(st_cast(mls, "MULTIPOINT"))
397s Geometry set for 3 features 
397s MULTIPOINT ((0 0), (10 0), (10 10), (0 10))
397s Geometry type: MULTIPOINT
397s Dimension:     XY
397s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
397s CRS:           NA
397s MULTIPOINT ((5 5), (5 6), (6 6), (6 5))
397s MULTIPOINT ((0 0), (1 0), (1 1), (0 1))
397s > 
397s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
397s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
397s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
397s > pol1 = list(outer, hole1, hole2)
397s > pol2 = list(outer + 12, hole1 + 12)
397s > pol3 = list(outer + 24)
397s > mp = list(pol1,pol2,pol3)
397s > mp1 = st_multipolygon(mp)
397s > s = st_sfc(mp1)
397s > x = st_cast(s, "MULTIPOINT")
397s > x = st_cast(s, "POINT")
397s > expect_warning(st_cast(mp1, "LINESTRING"))
397s > expect_warning(st_cast(mp1, "POINT"))
397s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5 6, 6 6, 6 5, 5 5))
397s > mls = mls[[1]]
397s > class(mls)
397s [1] "XY"              "MULTILINESTRING" "sfg"            
397s > #expect_error(st_cast(mls, "POLYGON"))
397s > st_cast(mls, "POLYGON")
397s > 
397s > expect_warning(st_cast(mls, "POINT"))
397s > p1 = st_polygon(pol1)
397s > expect_warning(st_cast(p1, "POINT"))
397s > ls = ls[[1]]
397s > class(ls)
397s [1] "XY"         "LINESTRING" "sfg"       
397s > expect_warning(st_cast(ls, "POINT"))
397s > 
397s > mls = st_cast(p1, "MULTILINESTRING")
397s > p2 = st_cast(mls, "POLYGON")
397s > 
397s > # st_is:
397s > st_is(st_point(0:1), "POINT")
397s [1] TRUE
397s > sfc = st_sfc(st_point(0:1), st_linestring(matrix(1:6,,2)))
397s > st_is(sfc, "POINT")
397s [1]  TRUE FALSE
397s > st_is(sfc, "POLYGON")
397s [1] FALSE FALSE
397s > st_is(sfc, "LINESTRING")
397s [1] FALSE  TRUE
397s > st_is(st_sf(a = 1:2, sfc), "LINESTRING")
397s [1] FALSE  TRUE
397s > st_is(sfc, c("POINT", "LINESTRING"))
397s [1] TRUE TRUE
397s > 
397s > #1194:
397s > wkt <- "MULTICURVE (COMPOUNDCURVE (LINESTRING (-83.62333 35.55244, -83.62328 35.55232, -83.62323 35.55223, -83.62319 35.55216, -83.62312 35.55209, -83.6231 35.55207), CIRCULARSTRING (-83.6231 35.55207, -83.62307 35.55205, -83.62302 35.55204), LINESTRING (-83.62302 35.55204, -83.62299 35.55203, -83.62289 35.55198, -83.62281 35.55189, -83.62271 35.55182)))"
397s > g <- st_as_sfc(wkt)
397s > g <- st_sf(demo = "test", geom = g, crs = 4326)
397s > m = st_cast(g, "MULTILINESTRING")
397s > identical(m$geom[[1]], st_cast(g$geom[[1]], "MULTILINESTRING"))
397s [1] TRUE
397s > 
397s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon()), 'MULTIPOLYGON') #1961
397s Geometry set for 2 features  (with 2 geometries empty)
397s Geometry type: MULTIPOLYGON
397s Dimension:     XY
397s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
397s CRS:           NA
397s MULTIPOLYGON EMPTY
397s MULTIPOLYGON EMPTY
397s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon(), st_point(0:1)), 'POINT') #1961
397s Geometry set for 3 features  (with 2 geometries empty)
397s Geometry type: POINT
397s Dimension:     XY
397s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
397s CRS:           NA
397s POINT EMPTY
397s POINT EMPTY
397s POINT (0 1)
397s > 
397s BEGIN TEST crs.R
397s 
397s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
397s Copyright (C) 2024 The R Foundation for Statistical Computing
397s Platform: powerpc64le-unknown-linux-gnu
397s 
397s R is free software and comes with ABSOLUTELY NO WARRANTY.
397s You are welcome to redistribute it under certain conditions.
397s Type 'license()' or 'licence()' for distribution details.
397s 
397s R is a collaborative project with many contributors.
397s Type 'contributors()' for more information and
397s 'citation()' on how to cite R or R packages in publications.
397s 
397s Type 'demo()' for some demos, 'help()' for on-line help, or
397s 'help.start()' for an HTML browser interface to help.
397s Type 'q()' to quit R.
397s 
397s > suppressPackageStartupMessages(library(sf))
398s > options(rgdal_show_exportToProj4_warnings = "none")
398s > suppressWarnings(st_crs(-1))
398s Coordinate Reference System: NA
398s > suppressWarnings(st_crs(999999))
398s Coordinate Reference System: NA
398s > inherits(try(st_crs("error"), silent = TRUE), "try-error")
398s [1] TRUE
398s > str = "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725 +units=m +no_defs"
398s > x <- st_crs(str)
398s > x<- st_crs(3857)
398s > str = st_crs(3857)$proj4string
398s > st_crs(3857)$units
398s [1] "m"
398s > x = st_crs("+proj=longlat +datum=WGS84")
398s > x = st_crs(4326)
398s > x = st_crs("+proj=laea") # no EPSG
398s > 
398s > x = st_sfc(st_point(0:1))
398s > y = st_crs(x, parameters = TRUE)
398s > st_crs(x) = 4326
398s > y = st_crs(x, parameters = TRUE)
398s > 
398s > from = st_crs(4326)$proj4string
398s > to = st_crs(3857)$proj4string
398s > ret = sf_project(from, to, rbind(c(0,0), c(1,1)))
398s > round(ret, 7)
398s          [,1]     [,2]
398s [1,]      0.0      0.0
398s [2,] 111319.5 111325.1
398s > # create Inf points: #1227/#1228
398s > suppressWarnings(
398s +   sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE)
398s + )
398s      [,1]      [,2]
398s [1,]    0 -53554590
398s [2,]   NA        NA
398s > sf_project(to, from, ret)
398s      [,1] [,2]
398s [1,]    0    0
398s [2,]    1    1
398s > suppressWarnings(
398s +   sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE)
398s + )
398s      [,1]      [,2]
398s [1,]    0 -53554590
398s [2,]   NA        NA
398s > st_transform(st_sfc(st_point(c(0,0)), st_point(c(1,1)), crs = 4326), 3857)
398s Geometry set for 2 features 
398s Geometry type: POINT
398s Dimension:     XY
398s Bounding box:  xmin: 0 ymin: 0 xmax: 111319.5 ymax: 111325.1
398s Projected CRS: WGS 84 / Pseudo-Mercator
398s POINT (0 0)
398s > POINT (111319.5 111325.1)
398s if (Sys.getenv("USER") %in% c("edzer", "travis")) { # causes memory leaks:
398s +   stopifnot(inherits(try(sf_project("+proj=longlat", "+proj=bar", matrix(1:4,2)), silent = TRUE), "try-error"))
398s +   stopifnot(inherits(try(sf_project("+proj=foo", "+proj=longlat", matrix(1:4,2)), silent = TRUE), "try-error"))
398s + }
398s > 
398s > if (sf_extSoftVersion()["USE_PROJ_H"] == "true" || sf_proj_info("have_datum_files")) {
398s +   "datum files installed"
398s + } else {
398s +   "datum files not installed"
398s + }
398s [1] "datum files installed"
398s > 
398s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
398s +  x0 = sp::CRS("+init=epsg:4326")
398s +  cat(sp::wkt(x0), "\n")
398s +  x = st_crs(x0)
398s +  print(x)
398s + 
398s +  y0 = st_crs(4326)
398s +  y0
398s +  y = as(y0, "CRS")
398s +  cat(sp::wkt(y), "\n")
398s + }
398s GEOGCRS["WGS 84",
398s     ENSEMBLE["World Geodetic System 1984 ensemble",
398s         MEMBER["World Geodetic System 1984 (Transit)",
398s             ID["EPSG",1166]],
398s         MEMBER["World Geodetic System 1984 (G730)",
398s             ID["EPSG",1152]],
398s         MEMBER["World Geodetic System 1984 (G873)",
398s             ID["EPSG",1153]],
398s         MEMBER["World Geodetic System 1984 (G1150)",
398s             ID["EPSG",1154]],
398s         MEMBER["World Geodetic System 1984 (G1674)",
398s             ID["EPSG",1155]],
398s         MEMBER["World Geodetic System 1984 (G1762)",
398s             ID["EPSG",1156]],
398s         MEMBER["World Geodetic System 1984 (G2139)",
398s             ID["EPSG",1309]],
398s         ELLIPSOID["WGS 84",6378137,298.257223563,
398s             LENGTHUNIT["metre",1],
398s             ID["EPSG",7030]],
398s         ENSEMBLEACCURACY[2.0],
398s         ID["EPSG",6326]],
398s     PRIMEM["Greenwich",0,
398s         ANGLEUNIT["degree",0.0174532925199433],
398s         ID["EPSG",8901]],
398s     CS[ellipsoidal,2],
398s         AXIS["longitude",east,
398s             ORDER[1],
398s             ANGLEUNIT["degree",0.0174532925199433,
398s                 ID["EPSG",9122]]],
398s         AXIS["latitude",north,
398s             ORDER[2],
398s             ANGLEUNIT["degree",0.0174532925199433,
398s                 ID["EPSG",9122]]],
398s     USAGE[
398s         SCOPE["unknown"],
398s         AREA["World."],
398s         BBOX[-90,-180,90,180]]] 
398s Coordinate Reference System:
398s   User input: WGS 84 
398s   wkt:
398s GEOGCRS["WGS 84",
398s     ENSEMBLE["World Geodetic System 1984 ensemble",
398s         MEMBER["World Geodetic System 1984 (Transit)",
398s             ID["EPSG",1166]],
398s         MEMBER["World Geodetic System 1984 (G730)",
398s             ID["EPSG",1152]],
398s         MEMBER["World Geodetic System 1984 (G873)",
398s             ID["EPSG",1153]],
398s         MEMBER["World Geodetic System 1984 (G1150)",
398s             ID["EPSG",1154]],
398s         MEMBER["World Geodetic System 1984 (G1674)",
398s             ID["EPSG",1155]],
398s         MEMBER["World Geodetic System 1984 (G1762)",
398s             ID["EPSG",1156]],
398s         MEMBER["World Geodetic System 1984 (G2139)",
398s             ID["EPSG",1309]],
398s         ELLIPSOID["WGS 84",6378137,298.257223563,
398s             LENGTHUNIT["metre",1],
398s             ID["EPSG",7030]],
398s         ENSEMBLEACCURACY[2.0],
398s         ID["EPSG",6326]],
398s     PRIMEM["Greenwich",0,
398s         ANGLEUNIT["degree",0.0174532925199433],
398s         ID["EPSG",8901]],
398s     CS[ellipsoidal,2],
398s         AXIS["longitude",east,
398s             ORDER[1],
398s             ANGLEUNIT["degree",0.0174532925199433,
398s                 ID["EPSG",9122]]],
398s         AXIS["latitude",north,
398s             ORDER[2],
398s             ANGLEUNIT["degree",0.0174532925199433,
398s                 ID["EPSG",9122]]],
398s     USAGE[
398s         SCOPE["unknown"],
398s         AREA["World."],
398s         BBOX[-90,-180,90,180]]]
398s Warning message:
398s In CPL_crs_from_input(x) :
398s   GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order.
398s GEOGCRS["WGS 84",
398s     ENSEMBLE["World Geodetic System 1984 ensemble",
398s         MEMBER["World Geodetic System 1984 (Transit)"],
398s         MEMBER["World Geodetic System 1984 (G730)"],
398s         MEMBER["World Geodetic System 1984 (G873)"],
398s         MEMBER["World Geodetic System 1984 (G1150)"],
398s         MEMBER["World Geodetic System 1984 (G1674)"],
398s         MEMBER["World Geodetic System 1984 (G1762)"],
398s         MEMBER["World Geodetic System 1984 (G2139)"],
398s         ELLIPSOID["WGS 84",6378137,298.257223563,
398s             LENGTHUNIT["metre",1]],
398s         ENSEMBLEACCURACY[2.0]],
398s     PRIMEM["Greenwich",0,
398s         ANGLEUNIT["degree",0.0174532925199433]],
398s     CS[ellipsoidal,2],
398s         AXIS["geodetic latitude (Lat)",north,
398s             ORDER[1],
398s             ANGLEUNIT["degree",0.0174532925199433]],
398s         AXIS["geodetic longitude (Lon)",east,
398s             ORDER[2],
398s             ANGLEUNIT["degree",0.0174532925199433]],
398s     USAGE[
398s         SCOPE["Horizontal component of 3D system."],
398s         AREA["World."],
398s         BBOX[-90,-180,90,180]],
398s     ID["EPSG",4326]] 
398s > 
398s > # https://github.com/r-spatial/sf/issues/1170
398s > g = st_as_sfc("POLYGON ((-61.66957 10.69214, -61.565 10.75728, -61.37453 10.77654, -61.40721 10.60681, -61.66957 10.69214))")
398s > d = st_as_sf(data.frame(id=1, geometry=g), crs=4326)
398s > st_area(d)
398s 350534486 [m^2]
398s > st_area(st_transform(d, 2314))
398s 349124497 [m^2]
398s > 
398s > st_axis_order()
398s [1] FALSE
398s > if (compareVersion(sf_extSoftVersion()["GDAL"], "2.5.0") > -1)
398s +   st_axis_order(TRUE)
398s > st_axis_order(FALSE)
398s > 
398s BEGIN TEST dist.R
398s 
398s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
398s Copyright (C) 2024 The R Foundation for Statistical Computing
398s Platform: powerpc64le-unknown-linux-gnu
398s 
398s R is free software and comes with ABSOLUTELY NO WARRANTY.
398s You are welcome to redistribute it under certain conditions.
398s Type 'license()' or 'licence()' for distribution details.
398s 
398s R is a collaborative project with many contributors.
398s Type 'contributors()' for more information and
398s 'citation()' on how to cite R or R packages in publications.
398s 
398s Type 'demo()' for some demos, 'help()' for on-line help, or
398s 'help.start()' for an HTML browser interface to help.
398s Type 'q()' to quit R.
398s 
398s > suppressPackageStartupMessages(library(sf))
398s > suppressPackageStartupMessages(library(units))
398s > 
398s > x = st_sfc(
398s + st_point(c(0,0)),
398s + st_point(c(1,0)),
398s + st_point(c(2,0)),
398s + st_point(c(3,0)),
398s + crs = 4326
398s + )
398s > 
398s > y = st_sfc(
398s + st_point(c(0,10)),
398s + st_point(c(1,0)),
398s + st_point(c(2,0)),
398s + st_point(c(3,0)),
398s + st_point(c(4,0)),
398s + crs = 4326
398s + )
398s > 
398s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
398s +  d.sf = st_distance(x, y)
398s +  d.sp = spDists(as(x, "Spatial"), as(y, "Spatial"))
398s +  units(d.sp) = as_units("km")
398s +  print(round(d.sf - d.sp, 7))
398s + 
398s + #summary(unclass(d.sf) - d.sp)
398s + 
398s +  st_crs(x) = st_crs(y) = NA
398s +  d.sf = st_distance(x, y)
398s +  d.sp = spDists(as(x, "Spatial"), as(y, "Spatial"))
398s +  print(round(d.sf - d.sp, 7))
398s + }
399s Units: [m]
399s          [,1]      [,2]      [,3]      [,4]      [,5]
399s [1,] 6107.765 -124.3896 -248.7792 -373.1688 -497.5585
399s [2,] 6065.138    0.0000 -124.3896 -248.7792 -373.1688
399s [3,] 5940.569 -124.3896    0.0000 -124.3896 -248.7792
399s [4,] 5743.252 -248.7792 -124.3896    0.0000 -124.3896
399s      [,1] [,2] [,3] [,4] [,5]
399s [1,]    0    0    0    0    0
399s [2,]    0    0    0    0    0
399s [3,]    0    0    0    0    0
399s [4,]    0    0    0    0    0
399s > 
399s > # st_length:
399s > st_crs(y) = 4326
399s > (z = st_sfc(st_linestring(rbind(c(0,10), c(1,0), c(2,0), c(3,0), c(4,0))), crs = 4326))
399s Geometry set for 1 feature 
399s Geometry type: LINESTRING
399s Dimension:     XY
399s Bounding box:  xmin: 0 ymin: 0 xmax: 4 ymax: 10
399s Geodetic CRS:  WGS 84
399s LINESTRING (0 10, 1 0, 2 0, 3 0, 4 0)
399s > d = st_distance(y, y)
399s > round(d, 7)
399s Units: [m]
399s         [,1]      [,2]      [,3]      [,4]      [,5]
399s [1,]       0 1117440.6 1133750.1 1160423.1 1196767.0
399s [2,] 1117441       0.0  111195.1  222390.2  333585.3
399s [3,] 1133750  111195.1       0.0  111195.1  222390.2
399s [4,] 1160423  222390.2  111195.1       0.0  111195.1
399s [5,] 1196767  333585.3  222390.2  111195.1       0.0
399s > st_length(z)
399s 1451026 [m]
399s > MULTIPOINT ((0 0.5))
399s MULTIPOINT ((0.5 0), (1.5 0), (2.5 0), (3.5 0),...
399s Error in st_line_sample(ls, density = 1/1000) : 
399s   st_line_sample for longitude/latitude not supported; use st_segmentize?
399s round(st_length(z) - sum(d[1,2], d[2,3], d[3,4], d[4,5]), 7)
399s 0 [m]
399s > 
399s > # st_line_sample:
399s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
399s + 	st_linestring(rbind(c(0,0),c(10,0))))
399s > # set.seed(135)
399s > st_line_sample(ls, density = 1)
399s Geometry set for 2 features 
399s Geometry type: MULTIPOINT
399s Dimension:     XY
399s Bounding box:  xmin: 0 ymin: 0 xmax: 9.5 ymax: 0.5
399s CRS:           NA
399s > 
399s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
399s + 	st_linestring(rbind(c(0,0),c(.1,0))), crs = 4326)
399s > 
399s > st_length(ls)
399s Units: [m]
399s [1] 111195.10  11119.51
399s > try(st_line_sample(ls, density = 1/1000))
399s > x = st_line_sample(st_transform(ls, 3857), density = 1/1000) # one per km
399s > 
399s BEGIN TEST dplyr.R
399s 
399s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
399s Copyright (C) 2024 The R Foundation for Statistical Computing
399s Platform: powerpc64le-unknown-linux-gnu
399s 
399s R is free software and comes with ABSOLUTELY NO WARRANTY.
399s You are welcome to redistribute it under certain conditions.
399s Type 'license()' or 'licence()' for distribution details.
399s 
399s R is a collaborative project with many contributors.
399s Type 'contributors()' for more information and
399s 'citation()' on how to cite R or R packages in publications.
399s 
399s Type 'demo()' for some demos, 'help()' for on-line help, or
399s 'help.start()' for an HTML browser interface to help.
399s Type 'q()' to quit R.
399s 
399s > suppressPackageStartupMessages(library(sf))
399s > 
399s > if (require(dplyr, quietly = TRUE)) {
399s +  options(dplyr.summarise.inform=FALSE)
399s +  read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>%
399s + 	st_transform(3857) -> nc
399s +  nc %>% filter(AREA > .1) %>% plot()
399s + 
399s + # plot 10 smallest counties in grey:
399s +  nc %>% 
399s +    select(BIR74, geometry) %>% 
399s +    plot()
399s + 
399s +  nc %>% 
399s +   select(AREA, geometry) %>% 
399s +   arrange(AREA) %>% 
399s +   slice(1:10) %>% 
399s +   plot(add = TRUE, col = 'grey', main ="")
399s + 
399s + # select: check both when geometry is part of the selection, and when not:
399s +  nc %>% select(SID74, SID79) %>% names()
399s +  nc %>% select(SID74, SID79, geometry) %>% names()
399s +  nc %>% select(SID74, SID79) %>% class()
399s +  nc %>% select(SID74, SID79, geometry) %>% class()
399s + 
399s + # group_by:
399s +  nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
399s +  nc %>% group_by(area_cl) %>% class()
399s + 
399s + # mutate:
399s +  nc2 <- nc %>% mutate(area10 = AREA/10)
399s + 
399s + # transmute:
399s +  nc %>% transmute(AREA = AREA/10, geometry = geometry) %>% class()
399s +  nc %>% transmute(AREA = AREA/10) %>% class()
399s + 
399s + # rename:
399s +  nc2 <- nc %>% rename(area = AREA)
399s + 
399s + # distinct:
399s +  nc[c(1:100,1:10),] %>% distinct() %>% nrow()
399s + 
399s + # summarize:
399s +  nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
399s +  nc.g <- nc %>% group_by(area_cl)
399s +  nc.g %>% summarise(mean(AREA))
399s +  nc.g %>% summarize(mean(AREA)) %>% plot(col = 3:6/7)
399s + 
399s +  library(tidyr)
399s + 
399s + # time-wide to long table, using tidyr::gather
399s + # stack the two SID columns for the July 1, 1974 - June 30, 1978 and July 1, 1979 - June 30, 1984 periods
399s + # (see https://cran.r-project.org/web/packages/spdep/vignettes/sids.pdf)
399s +  nc %>% select(SID74, SID79, geometry) %>% gather("VAR", "SID", -geometry) %>% summary()
399s + 
399s + # spread:
399s +  nc$row = 1:100
399s +  nc.g <- nc %>% select(SID74, SID79, row) %>% gather("VAR", "SID", -row, -geometry)
399s +  nc.g %>% tail()
399s +  nc.g %>% spread(VAR, SID) %>% head()
399s +  nc %>% select(SID74, SID79, geometry, row) %>% gather("VAR", "SID", -geometry, -row) %>% spread(VAR, SID) %>% head()
399s + 
399s + # test st_set_crs in pipe:
399s +  sfc = st_sfc(st_point(c(0,0)), st_point(c(1,1)))
399s +  x <- sfc %>% st_set_crs(4326) %>% st_transform(3857)
399s +  x
399s + 
399s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>%
399s + 	st_transform(3857) -> nc
399s +  nc.merc <- st_transform(nc, 32119) # NC State Plane
399s +  suppressPackageStartupMessages(library(units))
399s +  install_unit("person")
399s +  person = as_units("person")
399s +  nc.merc <- nc.merc %>% mutate(area = st_area(nc.merc), dens = BIR74 * person / area)
399s + 
399s + # summary(nc.merc$dens) # requires units 0.4-2
399s +  nc.merc$area_cl <- cut(nc$AREA, c(0, .1, .12, .15, .25))
399s +  nc.grp <- nc.merc %>% group_by(area_cl)
399s + 
399s +  out <- nc.grp %>% summarise(A = sum(area), pop = sum(dens * area), 
399s + 	new_dens = sum(dens * area)/sum(area)) 
399s + 
399s + # mean densities depend on grouping:
399s +  nc.merc %>% summarize(mean(dens))
399s +  out %>% summarise(mean(new_dens))
399s + 
399s + # total densities don't:
399s +  nc.merc %>% summarise(sum(area * dens))
399s +  out %>% summarise(sum(A * new_dens))
399s + 
399s +  conn = system.file("gpkg/nc.gpkg", package = "sf")
399s + 
399s + if (require(DBI, quietly = TRUE) && require(RSQLite, quietly = TRUE)) {
399s +  con = dbConnect(SQLite(), dbname = system.file("gpkg/nc.gpkg", package = "sf"))
399s +  dbReadTable(con, "nc.gpkg") %>% filter(AREA > 0.2) %>% collect %>% st_sf
399s + 
399s + # nest:
399s +  storms.sf = st_as_sf(storms, coords = c("long", "lat"), crs = 4326)
399s +  x <- storms.sf %>% group_by(name, year) %>% nest
399s + 
399s +  nrow(distinct(nc[c(1,1,1,2,2,3:100),]))
399s + 
399s + # set.seed(1331)
399s +  nc$gp <- sample(10, 100, replace=TRUE)
399s + # Get centroid of each group of polygons; https://github.com/r-spatial/sf/issues/969
399s +  nc_gp_cent <- nc %>%
399s +                 group_by(gp) %>%
399s +                 group_map(st_area)
399s + 
399s +  nc %>% st_filter(nc[1,]) %>% nrow
399s + } # DBI & SQLITE
399s + } # dplyr
400s 
400s Attaching package: 'dplyr'
400s 
400s The following objects are masked from 'package:stats':
400s 
400s     filter, lag
400s 
400s The following objects are masked from 'package:base':
400s 
400s     intersect, setdiff, setequal, union
400s 
401s [1] 4
401s Warning message:
401s plotting the first 10 out of 14 attributes; use max.plot = 14 to plot all 
401s > 
401s BEGIN TEST empty.R
401s 
401s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
401s Copyright (C) 2024 The R Foundation for Statistical Computing
401s Platform: powerpc64le-unknown-linux-gnu
401s 
401s R is free software and comes with ABSOLUTELY NO WARRANTY.
401s You are welcome to redistribute it under certain conditions.
401s Type 'license()' or 'licence()' for distribution details.
401s 
401s R is a collaborative project with many contributors.
401s Type 'contributors()' for more information and
401s 'citation()' on how to cite R or R packages in publications.
401s 
401s Type 'demo()' for some demos, 'help()' for on-line help, or
401s 'help.start()' for an HTML browser interface to help.
401s Type 'q()' to quit R.
401s 
401s > suppressPackageStartupMessages(library(sf))
402s > 
402s > # create empty geometries:
402s > st_point(rep(NA_real_,2))
402s POINT EMPTY
402s > st_point(rep(NA_real_,3), dim = "XYZ")
402s POINT Z EMPTY
402s > st_point(rep(NA_real_,3), dim = "XYM")
402s POINT M EMPTY
402s POINT ZM EMPTY
402s MULTIPOINT EMPTY
402s MULTIPOINT Z EMPTY
402s MULTIPOINT M EMPTY
402s MULTIPOINT ZM EMPTY
402s LINESTRING EMPTY
402s LINESTRING Z EMPTY
402s LINESTRING M EMPTY
402s LINESTRING ZM EMPTY
402s MULTILINESTRING EMPTY
402s MULTILINESTRING Z EMPTY
402s MULTILINESTRING M EMPTY
402s MULTILINESTRING ZM EMPTY
402s POLYGON EMPTY
402s POLYGON Z EMPTY
402s POLYGON M EMPTY
402s POLYGON ZM EMPTY
402s > st_point(rep(NA_real_,4), dim = "XYZM")
402s > 
402s > st_multipoint()
402s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYZ")
402s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYM")
402s > st_multipoint(matrix(numeric(0), 0, 4), dim = "XYZM")
402s > 
402s > st_linestring(matrix(numeric(0), 0, 2), "XY")
402s > st_linestring(matrix(numeric(0), 0, 3), "XYZ")
402s > st_linestring(matrix(numeric(0), 0, 3), "XYM")
402s > st_linestring(matrix(numeric(0), 0, 4), "XYZM")
402s > 
402s > st_multilinestring(list(), "XY")
402s > st_multilinestring(list(), "XYZ")
402s > st_multilinestring(list(), "XYM")
402s > st_multilinestring(list(), "XYZM")
402s > 
402s > st_polygon(list(), "XY")
402s > st_polygon(list(), "XYZ")
402s > st_polygon(list(), "XYM")
402s > st_polygon(list(), "XYZM")
402s > 
402s > st_multipolygon(list(), "XY")
402s > st_multipolygon(list(), "XYZ")
402s > st_multipolygon(list(), "XYM")
402s > st_multipolygon(list(), "XYZM")
402s > 
402s > st_geometrycollection()
402s > st_geometrycollection(dim = "XYZ")
402s > st_geometrycollection(dim = "XYM")
402s > st_geometrycollection(dim = "XYZM")
402s > 
402s > st_point(rep(NA_real_,2))
402s > st_multipoint()
402s > st_linestring(matrix(numeric(0), 0, 2))
402s > st_multilinestring(list(), "XY")
402s > st_polygon(list(), "XY")
402s > st_multipolygon(list(), "XY")
402s > st_geometrycollection(, "XY")
402s > 
402s > (e1 = st_sfc(
402s + st_point(rep(NA_real_,2)),
402s + st_multipoint(),
402s + st_linestring(matrix(numeric(0), 0, 2)),
402s + st_multilinestring(list(), "XY"),
402s + st_polygon(list(), "XY"),
402s + st_multipolygon(list(), "XY"),
402s + st_geometrycollection(, "XY")))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XY
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s CRS:           NA
402s First 5 geometries:
402s > 
402s > (e2 = st_sfc(st_point(rep(NA_real_,3), "XYZ"),
402s + st_multipoint(matrix(numeric(0),0,3), dim = "XYZ"),
402s + st_linestring(matrix(numeric(0), 0, 3)),
402s + st_multilinestring(list(), "XYZ"),
402s + st_polygon(list(), "XYZ"),
402s + st_multipolygon(list(), "XYZ"),
402s + st_geometrycollection(dim = "XYZ")))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYZ
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s z_range:       zmin: NA zmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > 
402s > (e3 = st_sfc(st_point(rep(NA_real_,3), "XYM"),
402s + st_multipoint(matrix(numeric(0),0,3), dim = "XYM"),
402s + st_linestring(matrix(numeric(0), 0, 3), "XYM"),
402s + st_multilinestring(list(), "XYM"),
402s + st_polygon(list(), "XYM"),
402s + st_multipolygon(list(), "XYM"),
402s + st_geometrycollection(dim = "XYM")))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYM
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s m_range:       mmin: NA mmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > 
402s > (e4 = st_sfc(st_point(rep(NA_real_,4)),
402s + st_multipoint(matrix(numeric(0),0,4), dim = "XYZM"),
402s + st_linestring(matrix(numeric(0), 0, 4)),
402s + st_multilinestring(list(), "XYZM"),
402s + st_polygon(list(), "XYZM"),
402s + st_multipolygon(list(), "XYZM"),
402s + st_geometrycollection(dim = "XYZM")))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYZM
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s z_range:       zmin: NA zmax: NA
402s m_range:       mmin: NA mmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > 
402s > st_as_sfc(st_as_binary(e1, pureR = TRUE))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XY
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s CRS:           NA
402s First 5 geometries:
402s > st_as_sfc(st_as_binary(e1, pureR = FALSE))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XY
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s CRS:           NA
402s First 5 geometries:
402s > st_as_sfc(st_as_binary(e2, pureR = FALSE))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYZ
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s z_range:       zmin: NA zmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > st_as_sfc(st_as_binary(e3, pureR = FALSE))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYM
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s m_range:       mmin: NA mmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > st_as_sfc(st_as_binary(e4, pureR = FALSE))
402s MULTIPOLYGON EMPTY
402s MULTIPOLYGON Z EMPTY
402s MULTIPOLYGON M EMPTY
402s MULTIPOLYGON ZM EMPTY
402s GEOMETRYCOLLECTION EMPTY
402s GEOMETRYCOLLECTION Z EMPTY
402s GEOMETRYCOLLECTION M EMPTY
402s GEOMETRYCOLLECTION ZM EMPTY
402s POINT EMPTY
402s MULTIPOINT EMPTY
402s LINESTRING EMPTY
402s MULTILINESTRING EMPTY
402s POLYGON EMPTY
402s MULTIPOLYGON EMPTY
402s GEOMETRYCOLLECTION EMPTY
402s POINT EMPTY
402s MULTIPOINT EMPTY
402s LINESTRING EMPTY
402s MULTILINESTRING EMPTY
402s POLYGON EMPTY
402s POINT Z EMPTY
402s MULTIPOINT Z EMPTY
402s LINESTRING Z EMPTY
402s MULTILINESTRING Z EMPTY
402s POLYGON Z EMPTY
402s POINT M EMPTY
402s MULTIPOINT M EMPTY
402s LINESTRING M EMPTY
402s MULTILINESTRING M EMPTY
402s POLYGON M EMPTY
402s POINT ZM EMPTY
402s MULTIPOINT ZM EMPTY
402s LINESTRING ZM EMPTY
402s MULTILINESTRING ZM EMPTY
402s POLYGON ZM EMPTY
402s POINT EMPTY
402s MULTIPOINT EMPTY
402s LINESTRING EMPTY
402s MULTILINESTRING EMPTY
402s POLYGON EMPTY
402s POINT EMPTY
402s MULTIPOINT EMPTY
402s LINESTRING EMPTY
402s MULTILINESTRING EMPTY
402s POLYGON EMPTY
402s POINT Z EMPTY
402s MULTIPOINT Z EMPTY
402s LINESTRING Z EMPTY
402s MULTILINESTRING Z EMPTY
402s POLYGON Z EMPTY
402s POINT M EMPTY
402s MULTIPOINT M EMPTY
402s LINESTRING M EMPTY
402s MULTILINESTRING M EMPTY
402s POLYGON M EMPTY
402s POINT ZM EMPTY
402s MULTIPOINT ZM EMPTY
402s LINESTRING ZM EMPTY
402s MULTILINESTRING ZM EMPTY
402s POLYGON ZM EMPTY
402s POINT EMPTY
402s MULTIPOINT EMPTY
402s LINESTRING EMPTY
402s MULTILINESTRING EMPTY
402s POLYGON EMPTY
402s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XYZM
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s z_range:       zmin: NA zmax: NA
402s m_range:       mmin: NA mmax: NA
402s CRS:           NA
402s First 5 geometries:
402s > st_as_sfc(st_as_binary(e1, pureR = FALSE))
402s Geometry set for 7 features  (with 7 geometries empty)
402s Geometry type: GEOMETRY
402s Dimension:     XY
402s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
402s CRS:           NA
402s First 5 geometries:
402s > 
402s > # sfc_GEOMETRY:
402s > x = st_sfc(st_point(0:1), st_linestring(matrix(1:4,2,2)))
402s > st_intersects(x, x, sparse = FALSE)
402s       [,1]  [,2]
402s [1,]  TRUE FALSE
402s [2,] FALSE  TRUE
402s > 
402s > # two empty geoms:
402s > x = st_sfc(st_multipoint(), st_linestring())
402s > st_intersects(x, x, sparse = FALSE)
402s       [,1]  [,2]
402s [1,] FALSE FALSE
402s [2,] FALSE FALSE
402s > 
402s > # write & read:
402s > x = st_sf(a = 2:1, geom = structure(st_sfc(st_linestring(), st_linestring(matrix(1:4,2)))))
402s > write_sf(x, "empty.gpkg")
402s > y = st_read("empty.gpkg", quiet = TRUE)
402s > all.equal(x, y)
402s [1] "Component \"geom\": Attributes: < Component \"crs\": Component \"input\": 'is.NA' value mismatch: 0 in current 1 in target >"
402s [2] "Component \"geom\": Attributes: < Component \"crs\": Component \"wkt\": 'is.NA' value mismatch: 0 in current 1 in target >"  
402s > 
402s > # https://github.com/edzer/sfr/issues/398 :
402s > pt = st_sfc(st_point(c(0,92)), crs = 4267)
402s > robin_crs <- "+proj=robin +lon_0=0 +x_0=0 +y_0=0 +ellps=WGS84 +datum=WGS84 +units=m +no_defs"
402s > # india_crs <- "+init=epsg:24383"  # India-centered Lambert conformal conic projection
402s > india_crs <- "+proj=lcc +lat_1=12 +lat_0=12 +lon_0=80 +k_0=0.99878641 +x_0=2743195.5 +y_0=914398.5 +a=6377299.151 +b=6356098.145120132 +towgs84=295,736,257,0,0,0,0 +units=m +no_defs"
402s > st_transform(st_transform(pt, robin_crs), india_crs)[[1]]
402s POINT EMPTY
402s > 
402s BEGIN TEST gdal_geom.R
402s 
402s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
402s Copyright (C) 2024 The R Foundation for Statistical Computing
402s Platform: powerpc64le-unknown-linux-gnu
402s 
402s R is free software and comes with ABSOLUTELY NO WARRANTY.
402s You are welcome to redistribute it under certain conditions.
402s Type 'license()' or 'licence()' for distribution details.
402s 
402s R is a collaborative project with many contributors.
402s Type 'contributors()' for more information and
402s 'citation()' on how to cite R or R packages in publications.
402s 
402s Type 'demo()' for some demos, 'help()' for on-line help, or
402s 'help.start()' for an HTML browser interface to help.
402s Type 'q()' to quit R.
402s 
402s > suppressPackageStartupMessages(library(sf))
402s > 
402s > nc = st_read(system.file("shape/nc.shp", package="sf"), "nc", crs = 4267,
402s + 	agr = c(AREA = "aggregate", PERIMETER = "aggregate", CNTY_ = "identity",
402s + 		CNTY_ID = "identity", NAME = "identity", FIPS = "identity", FIPSNO = "identity",
402s + 		CRESS_ID = "identity", BIR74 = "aggregate", SID74 = "aggregate", NWBIR74 = "aggregate",
402s + 		BIR79 = "aggregate", SID79 = "aggregate", NWBIR79  = "aggregate"), quiet = TRUE)
402s > 
402s > st_is_valid(nc)
403s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s > 
403s > st_is_simple(nc)
403s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
403s > 
403s > nc_tr = st_transform(nc, 3857)
403s > 
403s > x = st_buffer(nc_tr, 1000)
403s > 
403s > x = st_boundary(nc)
403s > 
403s > x = st_convex_hull(nc)
403s > 
403s > x = st_simplify(nc_tr, dTolerance = 1e4)
403s > 
403s > x = st_simplify(nc_tr, preserveTopology = TRUE)
403s > 
403s > if (sf:::CPL_geos_version() >= "3.4.0")
403s + 	x = st_triangulate(nc_tr)
403s > 
403s > mls = st_multilinestring(list(matrix(c(0,0,0,1,1,1,0,0),,2,byrow=TRUE)))
403s > x = st_polygonize(mls)
403s > 
403s > x = st_segmentize(nc_tr, 5e4)
403s > Error : argument dfMaxLength should be positive
403s 
403s Warning message:
403s st_centroid assumes attributes are constant over geometries 
403s Warning message:
403s st_point_on_surface assumes attributes are constant over geometries 
403s 
403s > try(x <- st_segmentize(nc_tr, -0.1))
403s > 
403s > x = st_centroid(nc_tr)
403s > x = st_point_on_surface(nc_tr)
403s > 
403s > a = nc[1:5,]
403s > b = nc[4:10,]
403s > 
403s > x <- st_intersection(a[1,] ,b)
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s > 
403s > u = st_union(b) 
403s > 
403s > x <- st_intersection(st_geometry(a), st_geometry(u))
403s > 
403s > x = st_union(a[1,], b)
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s > 
403s > x = st_union(a, st_union(b))
403s > 
403s > x = st_difference(a[1,], b)
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s > 
403s > x = st_difference(a, st_union(b))
403s > 
403s > Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s x = st_sym_difference(a[1,], b)
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s > 
403s > x = st_sym_difference(a, st_union(b))
403s Warning message:
403s attribute variables are assumed to be spatially constant throughout all geometries 
403s > 
403s > x = st_drivers()
403s > #cat(paste("GDAL has", nrow(x), "drivers\n"))
403s > 
403s > # GEOS ops:
403s > 
403s > st_relate(a, b)
403s      [,1]        [,2]        [,3]        [,4]        [,5]        [,6]       
403s [1,]although coordinates are longitude/latitude, st_relate assumes that they are
403s planar
403s  "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
403s [2,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
403s [3,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
403s [4,] "2FFF1FFF2" "FF2FF1212" "FF2FF1212" "FF2F11212" "FF2FF1212" "FF2FF1212"
403s [5,] "FF2FF1212" "2FFF1FFF2" "FF2F11212" "FF2FF1212" "FF2FF1212" "FF2F11212"
403s      [,7]       
403s [1,] "FF2FF1212"
403s [2,] "FF2FF1212"
403s [3,] "FF2F11212"
403s [4,] "FF2FF1212"
403s [5,] "FF2FF1212"
403s > 
403s > st_disjoint(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `disjoint'
403s  1: 1, 2, 3, 4, 5, 6, 7
403s  2: 1, 2, 3, 4, 5, 6, 7
403s  3: 1, 2, 3, 4, 5, 6
403s  4: 2, 3, 5, 6, 7
403s  5: 1, 4, 5, 7
403s > 
403s although coordinates are longitude/latitude, st_crosses assumes that they are
403s planar
403s > st_touches(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `touches'
403s  1: (empty)
403s  2: (empty)
403s  3: 7
403s  4: 4
403s  5: 3, 6
403s > 
403s > st_crosses(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `crosses'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: (empty)
403s  5: (empty)
403s > 
403s > st_within(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `within'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s > 
403s > st_contains(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `contains'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s > 
403s > st_overlaps(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `overlaps'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: (empty)
403s  5: (empty)
403s > 
403s > st_equals(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `equals'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s > 
403s > st_covers(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `covers'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s although coordinates are longitude/latitude, st_overlaps assumes that they are
403s planar
403s > 
403s > st_covered_by(a, b)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `covered_by'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s > 
403s > st_equals_exact(a, b, 0.01)
403s Sparse geometry binary predicate list of length 5, where the predicate
403s was `equals_exact'
403s  1: (empty)
403s  2: (empty)
403s  3: (empty)
403s  4: 1
403s  5: 2
403s > 
403s > # st_is_within_distance(a, b, 2)
403s > 
403s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))))
403s POINT (1 2)
403s LINESTRING (1 3, 2 4)
403s POINT (1 2)
403s LINESTRING (1 4, 2 5, 3 6)
403s [1] POINT      LINESTRING
403s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE
403s > 
403s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))), by_geometry = FALSE)
403s [1] GEOMETRY
403s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE
403s > 
403s > st_zm(list(st_point(1:3), st_linestring(matrix(1:6,2,3))))
403s [[1]]
403s 
403s [[2]]
403s 
403s > 
403s > st_zm(list(st_point(1:2), st_linestring(matrix(1:6,3,2))), add = TRUE, "Z")
403s [[1]]
403s 
403s [[2]]
403s 
403s > 
403s > st_transform(st_sfc(st_point(c(0,0)), crs=4326), st_crs("+proj=geocent"))[[1]]
403s POINT Z (6378137 0 0)
403s > 
403s > cbind(st_area(nc_tr[1:5,]), a$AREA)
403s            [,1]  [,2]
403s [1,] 1760230516 0.114
403s [2,]  946417787 0.061
403s [3,] 2202223078 0.143
403s [4,] 1074332698 0.070
403s [5,] 2352528086 0.153
403s > 
403s > st_area(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))
403s [1] 1
403s > 
403s > st_length(st_linestring(rbind(c(0,0),c(0,1))))
403s [1] 1
403s > 
403s > st_length(st_multilinestring(list(rbind(c(0,0),c(0,1)))))
403s [1] 1
403s > 
403s > try(st_length(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))))
403s [1] 0
403s > 
403s > st_area(st_multilinestring(list(rbind(c(0,0),c(0,1)))))
403s [1] 0
403s > 
403s > # adds the (0.5 0.5) node:
403s > st_union(st_multilinestring(list(rbind(c(0,0),c(1,1)), rbind(c(0,1), c(1,0)))))
403s > 
403s > p1 = st_point(c(7,52))
403s MULTILINESTRING ((0 0, 1 1), (0 1, 1 0))
403s > p2 = st_point(c(-30,20))
403s > sfc = st_sfc(p1, p2)
403s > try(st_buffer(sfc, units::set_units(1000, km))) # error: no crs
403s Error in st_buffer.sfc(sfc, units::set_units(1000, km)) : 
403s   x does not have a crs set: can't convert units
403s > sfc = st_sfc(p1, p2, crs = 4326)
403s > try(zzz <- st_buffer(sfc, units::set_units(1000, km))) # error: wrong units
403s > if (version$os == "linux-gnu") { # FIXME: why does this break on windows - degree symbol?
403s +   x = st_buffer(sfc, units::set_units(0.1, rad))      # OK: will convert to arc_degrees
403s + }
403s > x = st_transform(sfc, 3857)
403s > x = st_buffer(x, units::set_units(1000, km)) # success
403s > 
403s > cr = st_as_sfc("CIRCULARSTRING(0 0,1 0,1 1)")
403s > cr1 = st_sf(a = 1, geometry = cr)
403s > plot(cr)
403s > st_as_grob(cr[[1]])
403s lines[GRID.lines.1] 
403s > 
403s > x = st_as_sfc("MULTISURFACE(CURVEPOLYGON(COMPOUNDCURVE(LINESTRING(-159.399779123 22.226016471, -159.399699153 22.226276431, -159.398736217 22.226118372, -159.398260872 22.226095318, -159.398140792 22.2260564590001, -159.398163058 22.2257268010001, -159.397882642 22.225394244, -159.397397157 22.225057335, -159.397318825 22.2251780230001, -159.396993115 22.225177984, -159.396748242 22.2248808800001, -159.396901679 22.224770398, -159.396876329 22.224673093, -159.399167008 22.224731392, -159.399502204 22.225551382), CIRCULARSTRING(-159.399502204 22.225551382, -159.399622762077 22.2257930044972, -159.399779123 22.226016471))))")
403s > mp <- x[[1]] %>% st_cast("MULTIPOLYGON")
403s > 
403s > x = st_as_sfc("COMPOUNDCURVE(CIRCULARSTRING(0 0, 1 1, 1 0),(1 0, 0 1))")
403s > ls <- x[[1]] %>% st_cast()
403s > class(ls)
403s [1] "XY"         "LINESTRING" "sfg"       
403s > 
403s > is.na(st_bbox(ls))
403s [1] FALSE
403s > 
403s > mp = st_combine(st_buffer(st_sfc(lapply(1:3, function(x) st_point(c(x,x)))), 0.2 * 1:3))
403s > plot(st_centroid(mp), add = TRUE, col = 'red') # centroid of combined geometry
403s > plot(st_centroid(mp, of_largest_polygon = TRUE), add = TRUE, col = 'blue', pch = 3) # center of largest sub-polygon
403s > 
403s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(0.5,0),c(0.5,0.5),c(0.5,0),c(1,0),c(1,1),c(0,1),c(0,0)))))
403s > suppressWarnings(st_is_valid(x))
403s [1] FALSE
403s > y = st_make_valid(x)
403s > y = st_make_valid(x[[1]])
403s > y = st_make_valid(st_sf(a = 1, geom = x))
403s > st_is_valid(y)
403s [1] TRUE
403s > 
403s BEGIN TEST geos.R
403s 
403s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
403s Copyright (C) 2024 The R Foundation for Statistical Computing
403s Platform: powerpc64le-unknown-linux-gnu
403s 
403s R is free software and comes with ABSOLUTELY NO WARRANTY.
403s You are welcome to redistribute it under certain conditions.
403s Type 'license()' or 'licence()' for distribution details.
403s 
403s R is a collaborative project with many contributors.
403s Type 'contributors()' for more information and
403s 'citation()' on how to cite R or R packages in publications.
403s 
403s Type 'demo()' for some demos, 'help()' for on-line help, or
403s 'help.start()' for an HTML browser interface to help.
403s Type 'q()' to quit R.
403s 
403s > suppressPackageStartupMessages(library(sf))
404s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"))
404s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
404s > nc_checked = st_transform(nc, 32119, check = TRUE)
404s > ncm = st_transform(nc, 32119)
404s > 
404s > x = st_transform(nc[1:10,], 32119)
404s > st_distance(x)
404s Units: [m]
404s            [,1]      [,2]      [,3]      [,4]      [,5]      [,6]      [,7]
404s  [1,]      0.00      0.00  25651.99 440561.48 299772.34 361529.73 419671.66
404s  [2,]      0.00      0.00      0.00 409429.44 268945.05 332590.52 388545.58
404s  [3,]  25651.99      0.00      0.00 367556.52 227018.38 290298.04 346669.14
404s  [4,] 440561.48 409429.44 367556.52      0.00  67226.86  45537.62      0.00
404s  [5,] 299772.34 268945.05 227018.38  67226.86      0.00      0.00  46527.56
404s  [6,] 361529.73 332590.52 290298.04  45537.62      0.00      0.00  30213.17
404s  [7,] 419671.66 388545.58 346669.14      0.00  46527.56  30213.17      0.00
404s  [8,] 384593.29 354295.06 312351.76  16130.19  11926.86      0.00      0.00
404s  [9,] 262353.97 231217.73 189310.73 140455.97      0.00  64606.27 119564.00
404s [10,]  71138.53  41943.71      0.00 330752.58 190183.42 252373.26 309863.33
404s            [,8]      [,9]     [,10]
404s  [1,] 384593.29 262353.97  71138.53
404s  [2,] 354295.06 231217.73  41943.71
404s  [3,] 312351.76 189310.73      0.00
404s  [4,]  16130.19 140455.97 330752.58
404s  [5,]  11926.86      0.00 190183.42
404s  [6,]      0.00  64606.27 252373.26
404s  [7,]      0.00 119564.00 309863.33
404s  [8,]      0.00  85533.33 275391.07
404s  [9,]  85533.33      0.00 152489.45
404s [10,] 275391.07 152489.45      0.00
404s > 
404s > st_is_valid(nc)
404s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
404s > 
404s > st_is_empty(st_sfc(st_point(), st_linestring()))
404s [1] TRUE TRUE
404s > 
404s > ops = c("intersects", #"disjoint", 
404s + "touches", "crosses", "within", "contains", "overlaps", "equals", "covers", "covered_by", "equals_exact")
404s > for (op in ops) {
404s + 	x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, FALSE)
404s + 	x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE)
404s + }
404s > 
404s > ops = c("intersects", #"disjoint", 
404s + "touches", "crosses", "within", "contains", "overlaps", "covers", "covered_by")
404s > df = data.frame(ops = ops)
404s > df$equal = NA
404s > for (op in ops)
404s + 	df[df$ops == op, "equal"] = identical(
404s + 		sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, FALSE),
404s + 		sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE,  TRUE)
404s + 	)
404s > df
404s          ops equal
404s 1 intersects  TRUE
404s 2    touches  TRUE
404s 3    crosses  TRUE
404s 4     within  TRUE
404s 5   contains  TRUE
404s 6   overlaps  TRUE
404s 7     covers  TRUE
404s 8 covered_by  TRUE
404s > 
404s > st_contains_properly(ncm[1:3,], ncm[1:3])
404s Sparse geometry binary predicate list of length 3, where the predicate
404s was `contains_properly'
404s  1: (empty)
404s  2: (empty)
404s  3: (empty)
404s > 
404s > st_combine(nc)
404s Geometry set for 1 feature 
404s Geometry type: MULTIPOLYGON
404s Dimension:     XY
404s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
404s Geodetic CRS:  NAD27
404s MULTIPOLYGON (((-81.47276 36.23436, -81.54084 3...
404s > 
404s > st_dimension(st_sfc(st_point(0:1), st_linestring(rbind(c(0,0),c(1,1))), 
404s + 	st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))))
404s [1] 0 1 2
404s > 
404s > ncbb = st_as_sfc(st_bbox(nc))
404s > g = st_make_grid(ncbb)
404s > x = st_intersection(nc, g)
406s > x = st_intersection(g, nc)
406s Warning message:
406s attribute variables are assumed to be spatially constant throughout all geometries 
407s > 
407s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
407s + st_linestring(rbind(c(0,0),c(10,0))))
407s > 
407s > suppressWarnings(RNGversion("3.5.3"))
407s > set.seed(13531)
407s > 
407s > st_line_sample(ls, density = 1, type = "random")
407s Geometry set for 2 features 
407s MULTIPOINT ((0 0.8878369))
407s MULTIPOINT ((0.2986488 0), (2.48417 0), (2.5678...
407s Geometry type: MULTIPOINT
407s Dimension:     XY
407s Bounding box:  xmin: 0 ymin: 0 xmax: 6.880179 ymax: 0.8878369
407s CRS:           NA
407s > 
407s > g = st_make_grid(ncbb, n = c(20,10))
407s > 
407s > a1 = st_interpolate_aw(nc["BIR74"], g, FALSE)
413s > sum(a1$BIR74) / sum(nc$BIR74) # not close to one: property is assumed spatially intensive
413s [1] 1.436123
413s > Warning message:
413s In st_interpolate_aw.sf(nc["BIR74"], g, FALSE) :
413s   st_interpolate_aw assumes attributes are constant or uniform over areas of x
413s a2 = st_interpolate_aw(nc["BIR74"], g, extensive = TRUE)
420s Warning message:
420s In st_interpolate_aw.sf(nc["BIR74"], g, extensive = TRUE) :
420s   st_interpolate_aw assumes attributes are constant or uniform over areas of x
420s > sum(a2$BIR74) / sum(nc$BIR74)
420s [1] 1
420s > 
420s > # missing x:
420s > g = st_make_grid(offset = c(0,0), cellsize = c(1,1), n = c(10,10))
420s > g = st_make_grid(what = "centers")
420s > length(g)
420s [1] 648
420s > g = st_make_grid(what = "corners")
420s > length(g)
420s [1] 703
420s > 
420s > g1 = st_make_grid(ncbb, 0.1, what = "polygons", square = FALSE)
420s > g2 = st_make_grid(ncbb, 0.1, what = "points", square = FALSE)
420s > 
420s > # st_line_merge:
420s > mls = st_multilinestring(list(rbind(c(0,0), c(1,1)), rbind(c(2,0), c(1,1))))
420s > st_line_merge(mls)
420s LINESTRING (0 0, 1 1, 2 0)
420s > 
420s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.5.0") > -1, silent = TRUE))) {
420s +  # voronoi:
420s +  set.seed(1)
420s +  x = st_multipoint(matrix(runif(10),,2))
420s +  box = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0))))
420s +  v = st_sfc(st_voronoi(x, st_sfc(box)))
420s +  plot(v, col = 0, border = 1, axes = TRUE)
420s +  plot(box, add = TRUE, col = 0, border = 1) # a larger box is returned, as documented
420s +  plot(x, add = TRUE, col = 'red', cex=2, pch=16)
420s +  plot(st_intersection(st_cast(v), box)) # clip to smaller box
420s +  plot(x, add = TRUE, col = 'red', cex=2, pch=16)
420s + 
420s +  v = st_voronoi(x)
420s +  print(class(v))
420s +  v = st_sfc(st_voronoi(st_sfc(x)))
420s +  print(class(v))
420s +  v = st_voronoi(st_sf(a = 1, geom = st_sfc(x)))
420s +  print(class(v))
420s + }
420s [1] "XY"                 "GEOMETRYCOLLECTION" "sfg"               
420s [1] "sfc_GEOMETRYCOLLECTION" "sfc"                   
420s [1] "sf"         "data.frame"
420s > 
420s > i = st_intersects(ncm, ncm[1:88,])
420s > all.equal(i, t(t(i)))
420s [1] TRUE
420s > 
420s > # check use of pattern in st_relate:
420s > sfc = st_as_sfc(st_bbox(st_sfc(st_point(c(0,0)), st_point(c(3,3)))))
420s > grd = st_make_grid(sfc, n = c(3,3))
420s > st_intersects(grd)
420s Sparse geometry binary predicate list of length 9, where the predicate
420s was `intersects'
420s  1: 1, 2, 4, 5
420s  2: 1, 2, 3, 4, 5, 6
420s  3: 2, 3, 5, 6
420s  4: 1, 2, 4, 5, 7, 8
420s  5: 1, 2, 3, 4, 5, 6, 7, 8, 9
420s  6: 2, 3, 5, 6, 8, 9
420s  7: 4, 5, 7, 8
420s  8: 4, 5, 6, 7, 8, 9
420s  9: 5, 6, 8, 9
420s > st_relate(grd, pattern = "****1****")
420s Sparse geometry binary predicate list of length 9, where the predicate
420s was `relate_pattern'
420s  1: 1, 2, 4
420s  2: 1, 2, 3, 5
420s  3: 2, 3, 6
420s  4: 1, 4, 5, 7
420s  5: 2, 4, 5, 6, 8
420s  6: 3, 5, 6, 9
420s  7: 4, 7, 8
420s  8: 5, 7, 8, 9
420s  9: 6, 8, 9
420s > st_relate(grd, pattern = "****0****")
420s Sparse geometry binary predicate list of length 9, where the predicate
420s was `relate_pattern'
420s  1: 5
420s  2: 4, 6
420s  3: 5
420s  4: 2, 8
420s  5: 1, 3, 7, 9
420s  6: 2, 8
420s  7: 5
420s  8: 4, 6
420s  9: 5
420s > st_rook = function(a, b = a, ...) st_relate(a, b, pattern = "F***1****", ...)
420s > st_rook(grd, sparse = FALSE)
420s        [,1]  [,2]  [,3]  [,4]  [,5]  [,6]  [,7]  [,8]  [,9]
420s  [1,] FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE FALSE
420s  [2,]  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE
420s  [3,] FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE FALSE FALSE
420s  [4,]  TRUE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE FALSE
420s  [5,] FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE
420s  [6,] FALSE FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE  TRUE
420s  [7,] FALSE FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE
420s  [8,] FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE
420s  [9,] FALSE FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE
420s > 
420s > #if (Sys.getenv("USER") %in% c("edzer", "travis")) { # memory leaks:
420s >   try(st_relate(st_point(), st_point(), pattern = "FF*FF****")) # error: use st_disjoint
420s > #}
420s > 
420s > a = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], 100000, sparse = FALSE)
420s > b = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], units::set_units(100000, m), sparse = FALSE)
420s > all.equal(a, b)
420s [1] TRUE
420s > x = st_is_within_distance(nc[1:3,], nc[1:5,], 100000)
420s Error : use st_disjoint for this pattern
420s > y = st_is_within_distance(nc[1:3,], nc[1:5,], units::set_units(100, km))
420s > all.equal(x, y)
420s [1] TRUE
420s > 
420s > nc_3857 = st_transform(nc, 3857)
420s > a = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], 100000, sparse = FALSE)
420s > b = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], units::set_units(100000, m), sparse = FALSE)
420s > all.equal(a, b)
420s [1] TRUE
420s > x = st_is_within_distance(nc_3857, nc_3857, 100000)
420s > y = st_is_within_distance(nc_3857, nc_3857, units::set_units(100, km))
421s > all.equal(x, y)
421s [1] TRUE
421s > 
421s > pe = st_sfc(st_point())
421s > p = st_sfc(st_point(c(0,0)), st_point(c(0,1)), st_point(c(0,2)))
421s > st_distance(p, p)
421s      [,1] [,2] [,3]
421s [1,]    0    1    2
421s [2,]    1    0    1
421s [3,]    2    1    0
421s > st_distance(p, pe)
421s      [,1]
421s [1,]   NA
421s [2,]   NA
421s [3,]   NA
421s > st_distance(p, p, by_element = TRUE)
421s [1] 0 0 0
421s > st_crs(p) = 4326
421s > st_distance(p, p[c(2,3,1)], by_element = TRUE)
421s Units: [m]
421s [1] 111195.1 111195.1 222390.2
421s > p = st_transform(p, 3587)
421s > st_distance(p, p[c(2,3,1)], by_element = TRUE)
421s Units: [m]
421s [1] 144589.5 142873.3 287462.8
421s > 
421s > # from https://github.com/r-spatial/sf/issues/458 :
421s > pts <- st_sfc(st_point(c(.5,.5)), st_point(c(1.5, 1.5)), st_point(c(2.5, 2.5)))
421s > pol <- st_polygon(list(rbind(c(0,0), c(2,0), c(2,2), c(0,2), c(0,0))))
421s > pol_df <- data.frame(id = 1) 
421s > st_geometry(pol_df) <- st_sfc(pol)
421s > st_intersects(pts, pol_df[pol_df$id == 2,]) # with empty sf/sfc
421s Sparse geometry binary predicate list of length 3, where the predicate
421s was `intersects'
421s  1: (empty)
421s  2: (empty)
421s  3: (empty)
421s > st_intersects(pts, pol_df[pol_df$id == 2,], sparse = FALSE) # with empty sf/sfc
421s     
421s [1,]
421s [2,]
421s [3,]
421s > 
421s > # st_node
421s > l = st_linestring(rbind(c(0,0), c(1,1), c(0,1), c(1,0), c(0,0)))
421s > st_node(l)
421s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1, 0 1, 0.5 0.5), (0.5 0.5, 1 0, 0 0))
421s > st_node(st_sfc(l))
421s Geometry set for 1 feature 
421s Geometry type: MULTILINESTRING
421s Dimension:     XY
421s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
421s CRS:           NA
421s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1,...
421s > st_node(st_sf(a = 1, st_sfc(l)))
421s Simple feature collection with 1 feature and 1 field
421s Geometry type: MULTILINESTRING
421s Dimension:     XY
421s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
421s CRS:           NA
421s   a                      st_sfc.l.
421s 1 1 MULTILINESTRING ((0 0, 0.5 ...
421s > 
421s > # print.sgbp:
421s > (lst = st_disjoint(nc, nc))
421s Sparse geometry binary predicate list of length 100, where the
421s predicate was `disjoint'
421s first 10 elements:
421s  1: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, ...
421s  2: 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, ...
421s  3: 1, 4, 5, 6, 7, 8, 9, 11, 12, 13, ...
421s  4: 1, 2, 3, 5, 6, 8, 9, 10, 11, 12, ...
421s  5: 1, 2, 3, 4, 7, 8, 10, 11, 12, 13, ...
421s  6: 1, 2, 3, 4, 7, 9, 10, 11, 12, 13, ...
421s  7: 1, 2, 3, 5, 6, 9, 10, 11, 12, 13, ...
421s  8: 1, 2, 3, 4, 5, 9, 10, 11, 12, 13, ...
421s  9: 1, 2, 3, 4, 6, 7, 8, 10, 11, 12, ...
421s  10: 1, 2, 4, 5, 6, 7, 8, 9, 11, 13, ...
421s > # dim.sgbp:
421s > dim(lst)
421s [1] 100 100
421s > # as.matrix.sgbp:
421s > as.matrix(lst)[1:5, 1:5]
421s       [,1]  [,2]  [,3]  [,4]  [,5]
421s [1,] FALSE FALSE  TRUE  TRUE  TRUE
421s [2,] FALSE FALSE FALSE  TRUE  TRUE
421s [3,]  TRUE FALSE FALSE  TRUE  TRUE
421s [4,]  TRUE  TRUE  TRUE FALSE  TRUE
421s [5,]  TRUE  TRUE  TRUE  TRUE FALSE
421s > # negate:
421s > !lst
421s Sparse geometry binary predicate list of length 100, where the
421s predicate was `!disjoint'
421s first 10 elements:
421s  1: 1, 2, 18, 19
421s  2: 1, 2, 3, 18
421s  3: 2, 3, 10, 18, 23, 25
421s  4: 4, 7, 56
421s  5: 5, 6, 9, 16, 28
421s  6: 5, 6, 8, 28
421s  7: 4, 7, 8, 17
421s  8: 6, 7, 8, 17, 20, 21
421s  9: 5, 9, 15, 16, 24, 31
421s  10: 3, 10, 12, 25, 26
421s > # as.data.frame:
421s > head(as.data.frame(lst), 10)
421s    row.id col.id
421s 1       1      3
421s 2       1      4
421s 3       1      5
421s 4       1      6
421s 5       1      7
421s 6       1      8
421s 7       1      9
421s 8       1     10
421s 9       1     11
421s 10      1     12
421s > 
421s > # snap:
421s > nc1 = st_transform(nc, 32119)
421s > g = st_make_grid(nc1, c(5000,5000), what = "centers")
421s > s = st_snap(nc1[1:3,], g, 2501*sqrt(2))
421s > sfg = st_snap(st_geometry(nc1)[[1]], g, 2501*sqrt(2))
421s > sfg = st_snap(st_geometry(nc1)[[1]], st_combine(g), 2501*sqrt(2))
421s > 
421s > # Hausdorff distance: http://geos.refractions.net/ro/doxygen_docs/html/classgeos_1_1algorithm_1_1distance_1_1DiscreteHausdorffDistance.html
421s > A = st_as_sfc("LINESTRING (0 0, 100 0, 10 100, 10 100)")
421s > B = st_as_sfc("LINESTRING (0 100, 0 10, 80 10)")
421s > st_distance(c(A,B))
421s          [,1]     [,2]
421s [1,] 0.000000 8.176236
421s [2,] 8.176236 0.000000
421s > st_distance(c(A,B), which = "Hausdorff")
421s          [,1]     [,2]
421s [1,]  0.00000 22.36068
421s [2,] 22.36068  0.00000
421s > st_distance(c(A,B), which = "Hausdorff", par = 0.001)
421s              [,1]         [,2]
421s [1,] 2.929643e-14 4.789000e+01
421s [2,] 4.789000e+01 2.131628e-14
421s > LE = st_as_sfc("LINESTRING EMPTY")
421s > st_distance(c(A, LE), which = "Hausdorff", par = 0.001)
421s              [,1] [,2]
421s [1,] 2.929643e-14   NA
421s [2,]           NA   NA
421s > 
421s > # one-argument st_intersection and st_difference:
421s > set.seed(131)
421s > m = rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))
421s > p = st_polygon(list(m))
421s > n = 100
421s > l = vector("list", n)
421s > for (i in 1:n)
421s +    l[[i]] = p + 10 * runif(2)
421s > s = st_sfc(l)
421s > plot(s, col = sf.colors(categorical = TRUE, alpha = .5))
421s > d = st_difference(s) # sequential differences: s1, s2-s1, s3-s2-s1, ...
421s > plot(d, col = sf.colors(categorical = TRUE, alpha = .5))
421s > i = st_intersection(s) # all intersections
421s > plot(i, col = sf.colors(categorical = TRUE, alpha = .5))
421s > summary(lengths(st_overlaps(s, s)))
421s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
421s    0.00    2.00    3.50    3.66    5.00    8.00 
421s > summary(lengths(st_overlaps(d, d)))
421s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
421s       0       0       0       0       0       0 
421s > summary(lengths(st_overlaps(i, i)))
421s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
421s       0       0       0       0       0       0 
421s > 
421s > sf = st_sf(s)
421s > i = st_intersection(sf) # all intersections
421s > plot(i["n.overlaps"])
422s > summary(i$n.overlaps - lengths(i$origins))
422s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
422s       0       0       0       0       0       0 
422s > 
422s > # st_nearest_points:
422s > pt1 = st_point(c(.1,.1))
422s > pt2 = st_point(c(.9,.9))
422s > b1 = st_buffer(pt1, 0.1)
422s > b2 = st_buffer(pt2, 0.1)
422s > plot(b1, xlim = c(0,1), ylim = c(0,1))
422s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
422s > plot(b2, add = TRUE)
422s > (ls0 = try(st_nearest_points(b1, b2))) # sfg
422s Geometry set for 1 feature 
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
422s CRS:           NA
422s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2)))) # sfc
422s Geometry set for 1 feature 
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
422s CRS:           NA
422s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
422s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2), pairwise = TRUE))) # sfc
422s Geometry set for 1 feature LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
422s 
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
422s CRS:           NA
422s > identical(ls0, ls)
422s [1] TRUE
422s > # plot(ls, add = TRUE, col = 'red')
422s > 
422s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf"))
422s > plot(st_geometry(nc))
422s > ls = try(st_nearest_points(nc[1,], nc))
422s > # plot(ls, col = 'red', add = TRUE)
422s > pts = st_cast(ls, "POINT") # gives all start & end points
422s There were 50 or more warnings (use warnings() to see the first 50)
422s > # starting, "from" points, corresponding to x:
422s > plot(pts[seq(1, 200, 2)], add = TRUE, col = 'blue')
422s > # ending, "to" points, corresponding to y:
422s > plot(pts[seq(2, 200, 2)], add = TRUE, col = 'red')
422s > 
422s > # points to nearest features
422s > ls1 = st_linestring(rbind(c(0,0), c(1,0)))
422s LINESTRING (0 0, 1 0)
422s > ls2 = st_linestring(rbind(c(0,0.1), c(1,0.1)))
422s > ls3 = st_linestring(rbind(c(0,1), c(1,1)))
422s > (l = st_sfc(ls1, ls2, ls3))
422s Geometry set for 3 features 
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
422s CRS:           NA
422s LINESTRING (0 0.1, 1 0.1)
422s LINESTRING (0 1, 1 1)
422s > 
422s > p1 = st_point(c(0.1, -0.1))
422s > p2 = st_point(c(0.1, 0.11))
422s > p3 = st_point(c(0.1, 0.09))
422s > p4 = st_point(c(0.1, 0.9))
422s > p5 = st_point()
422s > POINT (0.1 -0.1)
422s POINT (0.1 0.11)
422s POINT (0.1 0.09)
422s POINT (0.1 0.9)
422s POINT EMPTY
422s 
422s > (p = st_sfc(p1, p2, p3, p4, p5))
422s Geometry set for 5 features  (with 1 geometry empty)
422s Geometry type: POINT
422s Dimension:     XY
422s Bounding box:  xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 0.9
422s CRS:           NA
422s > #st_nearest_points(p, l)
422s > n = try(st_nearest_feature(p,l))
422s > if (!inherits(n, "try-error")) {
422s +   print(st_nearest_points(p, l[n], pairwise = TRUE))
422s +   print(st_nearest_feature(p, l))
422s +   print(st_nearest_feature(p, st_sfc()))
422s +   print(st_nearest_feature(st_sfc(), l))
422s + }
422s LINESTRING (0.1 -0.1, 0.1 0)
422s Geometry set for 5 features  (with 1 geometry empty)
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 1
422s CRS:           NA
422s LINESTRING (0.1 0.11, 0.1 0.1)
422s LINESTRING (0.1 0.09, 0.1 0.1)
422s LINESTRING (0.1 0.9, 0.1 1)
422s LINESTRING EMPTY
422s [1]  1  2  2  3 NA
422s [1] NA NA NA NA NA
422s integer(0)
422s > 
422s > # can do centroid of empty geom:
422s > st_centroid(st_polygon())
422s POINT EMPTY
422s > 
422s > #999:
422s > pt = data.frame(x=1:2, y=1:2,a=letters[1:2])
422s > pt = st_as_sf(pt, coords=c("x","y"))
422s > 
422s > bf =st_buffer(pt, dist=0.3)
422s > 
422s > st_within(pt,bf, sparse=FALSE)
422s       [,1]  [,2]
422s [1,]  TRUE FALSE
422s [2,] FALSE  TRUE
422s > st_within(pt[1,], bf[1,], sparse = FALSE)
422s      [,1]
422s [1,] TRUE
422s > st_relate(pt[1,], bf[1,], pattern = "T*F**F***", sparse = FALSE)
422s      [,1]
422s [1,] TRUE
422s > 
422s > sf:::is_symmetric(pattern = "010121010")
422s [1] TRUE
422s > sf:::is_symmetric(pattern = "010121021")
422s [1] FALSE
422s > 
422s > st_intersects(st_point(0:1), st_point(2:3)) # sfg method
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: (empty)
422s > 
422s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.7.0") > -1, silent = TRUE))) {
422s + 	ls = st_linestring(rbind(c(1,1), c(2,2), c(3,3)))
422s + 	print(st_reverse(ls))
422s + 	print(st_reverse(st_sfc(ls)))
422s + 	print(st_reverse(st_sf(a = 2, geom = st_sfc(ls))))
422s + }
422s Geometry set for 1 feature 
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
422s CRS:           NA
422s Simple feature collection with 1 feature and 1 field
422s Geometry type: LINESTRING
422s Dimension:     XY
422s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
422s CRS:           NA
422s   a                       geom
422s 1 2 LINESTRING (3 3, 2 2, 1 1)
422s > 
422s > p = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))
422s > y = st_sfc(p)
422s > x = st_sfc(p + 1.001)
422s > 
422s > x %>% st_set_precision(0) %>% st_intersects(y)
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: (empty)
422s > x %>% st_set_precision(10000) %>% st_intersects(y)
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: (empty)
422s > x %>% st_set_precision(1000) %>% st_intersects(y)
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: (empty)
422s > x %>% st_set_precision(501) %>% st_intersects(y) # no
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: (empty)
422s > x %>% st_set_precision(500) %>% st_intersects(y) # yes
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: 1
422s > x %>% st_set_precision(100) %>% st_intersects(y)
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: 1
422s > x %>% st_set_precision(10) %>% st_intersects(y)
422s Sparse geometry binary predicate list of length 1, where the predicate
422s was `intersects'
422s  1: 1
422s > 
422s > p1 = st_point(0:1)
422s > p2 = st_point(2:1)
422s > p = st_sf(a = letters[1:8], geom = st_sfc(p1, p1, p2, p1, p1, p2, p2, p1))
422s > st_equals(p)
422s Sparse geometry binary predicate list of length 8, where the predicate
422s was `equals'
422s  1: 1, 2, 4, 5, 8
422s  2: 1, 2, 4, 5, 8
422s  3: 3, 6, 7
422s  4: 1, 2, 4, 5, 8
422s  5: 1, 2, 4, 5, 8
422s  6: 3, 6, 7
422s  7: 3, 6, 7
422s  8: 1, 2, 4, 5, 8
422s > st_equals(p, remove_self = TRUE)
422s Sparse geometry binary predicate list of length 8, where the predicate
422s was `equals', with remove_self = TRUE
422s  1: 2, 4, 5, 8
422s  2: 1, 4, 5, 8
422s  3: 6, 7
422s  4: 1, 2, 5, 8
422s  5: 1, 2, 4, 8
422s  6: 3, 7
422s  7: 3, 6
422s  8: 1, 2, 4, 5
422s > (u = st_equals(p, retain_unique = TRUE))
422s Sparse geometry binary predicate list of length 8, where the predicate
422s was `equals', with retain_unique = TRUE
422s  1: 2, 4, 5, 8
422s  2: 4, 5, 8
422s  3: 6, 7
422s  4: 5, 8
422s  5: 8
422s  6: 7
422s  7: (empty)
422s  8: (empty)
422s > # retain the records with unique geometries:
422s > p[-unlist(u),]
422s Simple feature collection with 2 features and 1 field
422s Geometry type: POINT
422s LINESTRING (3 3, 2 2, 1 1)
422s LINESTRING (3 3, 2 2, 1 1)
422s Dimension:     XY
422s Bounding box:  xmin: 0 ymin: 1 xmax: 2 ymax: 1
422s CRS:           NA
422s   a        geom
422s 1 a POINT (0 1)
422s 3 c POINT (2 1)
422s > 
422s BEGIN TEST graticule.R
422s 
422s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
422s Copyright (C) 2024 The R Foundation for Statistical Computing
422s Platform: powerpc64le-unknown-linux-gnu
422s 
422s R is free software and comes with ABSOLUTELY NO WARRANTY.
422s You are welcome to redistribute it under certain conditions.
422s Type 'license()' or 'licence()' for distribution details.
422s 
422s R is a collaborative project with many contributors.
422s Type 'contributors()' for more information and
422s 'citation()' on how to cite R or R packages in publications.
422s 
422s Type 'demo()' for some demos, 'help()' for on-line help, or
422s 'help.start()' for an HTML browser interface to help.
422s Type 'q()' to quit R.
422s 
422s > if (require(maps, quietly = TRUE)) {
422s + m = map('usa', plot = FALSE, fill = TRUE)
422s + suppressPackageStartupMessages(library(sf))
422s + m0 <- st_as_sfc(m)
422s + m <- st_as_sf(m)
422s + 
422s + laea = st_crs("+proj=laea +lat_0=30 +lon_0=-95") # Lambert equal area
422s + m <- st_transform(st_as_sf(m), laea)
422s + 
422s + bb = st_bbox(m)
422s + bbox = st_linestring(rbind(c( bb[1],bb[2]),c( bb[3],bb[2]),c( bb[3],bb[4]),c( bb[1],bb[4]),c( bb[1],bb[2])))
422s + 
422s + g = st_graticule(m)
422s + plot(m, xlim = 1.2 * c(-2450853.4, 2186391.9))
422s + plot(g[1], add = TRUE, col = 'grey')
422s + plot(bbox, add = TRUE)
422s + points(g$x_start, g$y_start, col = 'red')
422s + points(g$x_end, g$y_end, col = 'blue')
422s + 
422s + invisible(lapply(seq_len(nrow(g)), function(i) {
422s + 	if (g$type[i] == "N" && g$x_start[i] - min(g$x_start) < 1000)
422s + 		text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 
422s + 			srt = g$angle_start[i], pos = 2, cex = .7)
422s + 	if (g$type[i] == "E" && g$y_start[i] - min(g$y_start) < 1000)
422s + 		text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 
422s + 			srt = g$angle_start[i] - 90, pos = 1, cex = .7)
422s + 	if (g$type[i] == "N" && g$x_end[i] - max(g$x_end) > -1000)
422s + 		text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 
422s + 			srt = g$angle_end[i], pos = 4, cex = .7)
422s + 	if (g$type[i] == "E" && g$y_end[i] - max(g$y_end) > -1000)
422s + 		text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 
422s + 			srt = g$angle_end[i] - 90, pos = 3, cex = .7)
422s + }))
422s + 
422s + plot(m, graticule = st_crs(4326))
422s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
422s + # options(warn=2)
422s + g = st_graticule(nc, datum = st_crs(nc))
422s + #g = st_graticule(nc)
422s + 
422s + plot(nc[1], graticule = st_crs(nc))
422s + 
422s + plot(nc[1], graticule = st_crs(nc), axes = TRUE)
422s + 
422s + g = st_graticule()
422s + 
422s + if (require(ggplot2, quietly = TRUE) && utils::packageVersion("ggplot2") > "2.2.1") {
422s +   ggplot() + geom_sf(data = st_set_crs(nc, NA_crs_)) # NA_crs_ for crs
422s + }
422s + 
422s + library(maps) #421
422s + (wrld2 = st_as_sf(map('world2', plot=FALSE, fill=TRUE )))
422s + try(plot(wrld2, graticule = TRUE))
422s + }
424s > 
424s BEGIN TEST grid.R
424s 
424s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
424s Copyright (C) 2024 The R Foundation for Statistical Computing
424s Platform: powerpc64le-unknown-linux-gnu
424s 
424s R is free software and comes with ABSOLUTELY NO WARRANTY.
424s You are welcome to redistribute it under certain conditions.
424s Type 'license()' or 'licence()' for distribution details.
424s 
424s R is a collaborative project with many contributors.
424s Type 'contributors()' for more information and
424s 'citation()' on how to cite R or R packages in publications.
424s 
424s Type 'demo()' for some demos, 'help()' for on-line help, or
424s 'help.start()' for an HTML browser interface to help.
424s Type 'q()' to quit R.
424s 
424s > # MULTIPOLYGONS
424s > suppressPackageStartupMessages(library(sf))
425s > library(grid)
425s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
425s > grid.newpage()
425s > # pushViewport(viewport(width = 0.8, height = 0.8))
425s > pushViewport(st_viewport(nc))
425s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
425s > 
425s > # POLYGONS
425s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", type = 3)
425s > nc = st_read(system.file("shape/nc.shp", package="sf"), type = 3, quiet = TRUE)
425s > grid.newpage()
425s > pushViewport(st_viewport(nc))
425s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
425s > 
425s > # POINTS:
425s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
425s +  data(meuse, package = "sp")
425s +  meuse_sf = st_as_sf(meuse, coords = c("x", "y"), crs = 28992, agr = "constant")
425s +  grid.newpage()
425s +  pushViewport(st_viewport(meuse_sf))
425s +  invisible(lapply(st_geometry(meuse_sf), 
425s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
425s + }
425s > 
425s > # MULTIPOINTS
425s > mp = st_multipoint(cbind(runif(100), runif(100)))
425s > grid.newpage()
425s > pushViewport(st_viewport(mp))
425s > grid.draw(st_as_grob(mp, gp = gpar(fill = 'red')))
425s > 
425s > # LINESTRING
425s > ls = st_linestring(cbind(1:10, rnorm(10)))
425s > grid.newpage()
425s > pushViewport(st_viewport(ls))
425s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red')))
425s > 
425s > # MULTILINESTRING
425s > ls = st_multilinestring(list(cbind(1:10, 5+rnorm(10)), cbind(1:10, rnorm(10)), cbind(1:10, -5+rnorm(10))))
425s > grid.newpage()
425s > pushViewport(st_viewport(ls))
425s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red')))
425s > 
425s > if (require(sp, quietly = TRUE)) {
425s + # POINTS, right aspect in Long/Lat:
425s + meuse_ll = st_transform(meuse_sf, 4326)
425s + grid.newpage()
425s + pushViewport(st_viewport(meuse_ll))
425s + invisible(lapply(st_geometry(meuse_ll), 
425s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
425s + 
425s + # WRONG aspect:
425s + st_crs(meuse_ll) = NA
425s + grid.newpage()
425s + pushViewport(st_viewport(meuse_ll))
425s + invisible(lapply(st_geometry(meuse_ll), 
425s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
425s + }
425s > 
425s > gc = st_geometrycollection(list(st_point(0:1), st_linestring(matrix(1:4,2))))
425s > grb = st_as_grob(gc)
425s > 
425s BEGIN TEST maps.R
425s 
425s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
425s Copyright (C) 2024 The R Foundation for Statistical Computing
425s Platform: powerpc64le-unknown-linux-gnu
425s 
425s R is free software and comes with ABSOLUTELY NO WARRANTY.
425s You are welcome to redistribute it under certain conditions.
425s Type 'license()' or 'licence()' for distribution details.
425s 
425s R is a collaborative project with many contributors.
425s Type 'contributors()' for more information and
425s 'citation()' on how to cite R or R packages in publications.
425s 
425s Type 'demo()' for some demos, 'help()' for on-line help, or
425s 'help.start()' for an HTML browser interface to help.
425s Type 'q()' to quit R.
425s 
425s > suppressPackageStartupMessages(library(sf))
426s > 
426s > if (require(maps, quietly = TRUE)) {
426s +  m = map(xlim = c(4,9), ylim = c(48,55), fill = TRUE, plot = FALSE)
426s +  st_as_sf(m)
426s +  m = map(xlim = c(4,9), ylim = c(48,55), plot = FALSE)
426s +  st_as_sf(m, fill = FALSE)
426s +  st_as_sf(map(), fill = FALSE)
426s +  st_as_sf(map(fill = TRUE))
426s +  st_as_sf(map(), fill = FALSE, group = FALSE)
426s +  st_as_sf(map(fill = TRUE), group = FALSE)
426s + }
427s Simple feature collection with 1627 features and 1 field
427s Geometry type: MULTIPOLYGON
427s Dimension:     XY
427s Bounding box:  xmin: -180 ymin: -85.19218 xmax: 190.2708 ymax: 83.59961
427s Geodetic CRS:  +proj=longlat +ellps=clrk66 +no_defs +type=crs
427s First 10 features:
427s                                                                  ID
427s Aruba                                                         Aruba
427s Afghanistan                                             Afghanistan
427s Angola                                                       Angola
427s Angola:Cabinda                                       Angola:Cabinda
427s Anguilla                                                   Anguilla
427s Albania                                                     Albania
427s Finland:Aland Islands:Foglo             Finland:Aland Islands:Foglo
427s Finland:Aland Islands:Eckero           Finland:Aland Islands:Eckero
427s Finland:Aland Islands:Fasta Aland Finland:Aland Islands:Fasta Aland
427s Andorra                                                     Andorra
427s                                                             geom
427s Aruba                             MULTIPOLYGON (((-69.89912 1...
427s Afghanistan                       MULTIPOLYGON (((74.89131 37...
427s Angola                            MULTIPOLYGON (((23.9665 -10...
427s Angola:Cabinda                    MULTIPOLYGON (((12.21367 -5...
427s Anguilla                          MULTIPOLYGON (((-63.00122 1...
427s Albania                           MULTIPOLYGON (((20.06396 42...
427s Finland:Aland Islands:Foglo       MULTIPOLYGON (((20.61133 60...
427s Finland:Aland Islands:Eckero      MULTIPOLYGON (((19.6623 60....
427s Finland:Aland Islands:Fasta Aland MULTIPOLYGON (((19.98955 60...
427s Andorra                           MULTIPOLYGON (((1.706055 42...
427s > 
427s BEGIN TEST plot.R
427s 
427s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
427s Copyright (C) 2024 The R Foundation for Statistical Computing
427s Platform: powerpc64le-unknown-linux-gnu
427s 
427s R is free software and comes with ABSOLUTELY NO WARRANTY.
427s You are welcome to redistribute it under certain conditions.
427s Type 'license()' or 'licence()' for distribution details.
427s 
427s R is a collaborative project with many contributors.
427s Type 'contributors()' for more information and
427s 'citation()' on how to cite R or R packages in publications.
427s 
427s Type 'demo()' for some demos, 'help()' for on-line help, or
427s 'help.start()' for an HTML browser interface to help.
427s Type 'q()' to quit R.
427s 
427s > suppressPackageStartupMessages(library(sf))
428s > options(rgdal_show_exportToProj4_warnings = "none")
428s > 
428s > if (require(dplyr, quietly = TRUE)) {
428s + 
428s + # plot linestrings:
428s + l1 = st_linestring(matrix(runif(6)-0.5,,2))
428s + l2 = st_linestring(matrix(runif(6)-0.5,,2))
428s + l3 = st_linestring(matrix(runif(6)-0.5,,2))
428s + s = st_sf(a=2:4, b=st_sfc(l1,l2,l3))
428s + plot(s, col = s$a, axes = FALSE)
428s + plot(s, col = s$a)
428s + if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
428s +   attr(s$b, "proj4string") = sp::CRS("+proj=longlat +ellps=WGS84 +no_defs")@projargs
428s + }
428s + plot(s, col = s$a, axes = TRUE)
428s + plot(s, col = s$a, lty = s$a, lwd = s$a, pch = s$a, type = 'b')
428s + l4 = st_linestring(matrix(runif(6),,2))
428s + plot(st_sf(a=1,b=st_sfc(l4)), add = TRUE)
428s + # plot multilinestrings:
428s + ml1 = st_multilinestring(list(l1, l2))
428s + ml2 = st_multilinestring(list(l3, l4))
428s + ml = st_sf(a = 2:3, b = st_sfc(ml1, ml2))
428s + plot(ml, col = ml$a, lty = ml$a, lwd = ml$a, pch = ml$a, type = 'b')
428s + # plot points:
428s + p1 = st_point(c(1,2))
428s + p2 = st_point(c(3,3))
428s + p3 = st_point(c(3,0))
428s + p = st_sf(a=2:4, b=st_sfc(p1,p2,p3))
428s + plot(p, col = s$a, axes = TRUE)
428s + plot(p, col = s$a)
428s + plot(p, col = p$a, pch = p$a, cex = p$a, bg = s$a, lwd = 2, lty = 2, type = 'b')
428s + p4 = st_point(c(2,2))
428s + plot(st_sf(a=1, st_sfc(p4)), add = TRUE)
428s + # multipoints:
428s + mp1 = st_multipoint(matrix(1:4,2))
428s + mp2 = st_multipoint(matrix(5:8,2))
428s + mp = st_sf(a = 2:3, b = st_sfc(mp1, mp2))
428s + plot(mp)
428s + plot(mp, col = mp$a, pch = mp$a, cex = mp$a, bg = mp$a, lwd = mp$a, lty = mp$a, type = 'b')
428s + # polygon:
428s + outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
428s + hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
428s + hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
428s + pl1 = st_polygon(list(outer, hole1, hole2))
428s + pl2 = st_polygon(list(outer+10, hole1+10, hole2+10))
428s + po = st_sf(a = 2:3, st_sfc(pl1,pl2))
428s + plot(po, col = po$a, border = rev(po$a), lwd=3)
428s + # multipolygon
428s + r10 = matrix(rep(c(0,10),each=5),5)
428s + pl1 = list(outer, hole1, hole2)
428s + pl2 = list(outer+10, hole1+10, hole2+10)
428s + pl3 = list(outer+r10, hole1+r10, hole2+r10)
428s + mpo1 = st_multipolygon(list(pl1,pl2))
428s + mpo2 = st_multipolygon(list(pl3))
428s + mpo = st_sf(a=2:3, b=st_sfc(mpo1,mpo2))
428s + plot(mpo, col = mpo$a, border = rev(mpo$a), lwd = 2)
428s + # geometrycollection:
428s + gc1 = st_geometrycollection(list(mpo1, st_point(c(21,21)), l1 * 2 + 21))
428s + gc2 = st_geometrycollection(list(mpo2, l2 - 2, l3 - 2, st_point(c(-1,-1))))
428s + gc = st_sf(a=2:3, b = st_sfc(gc1,gc2))
428s + plot(gc, cex = gc$a, col = gc$a, border = rev(gc$a) + 2, lwd = 2)
428s + 
428s + plot(gc1)
428s + 
428s + plot(st_sfc(mp1, mpo1))
428s + 
428s + # color ramp
428s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
428s + plot(nc)
428s + plot(nc, axes = TRUE)
428s + plot(nc, col="lightgrey") 
428s + plot(st_centroid(nc), add = TRUE, col = 1)
428s + if ("geometry" %in% names(nc)) {
428s +  nc %>% 
428s +   select(geometry) %>% 
428s +   plot()
428s + }
428s + 
428s + nc$f = cut(nc[[1]], 5)
428s + plot(nc["f"], key.pos = 1)
428s + plot(nc[1],   key.pos = 1)
428s + 
428s + # test background map plotting:
428s + load("bgmap.rda")
428s + merc = st_crs(3857)
428s + WGS84 = st_crs(4326)
428s + nc = st_transform(nc, WGS84)
428s + ## ggmap:
428s + #library(ggmap)
428s + #bgMap = get_map(unname(st_bbox(nc)), source = "google", zoom = 8) 
428s + plot(st_transform(nc[1], merc), bgMap = bgMap)
428s + 
428s + # RgoogleMaps:
428s + #library(RgoogleMaps)
428s + #center = c(mean(st_bbox(nc)[c(2,4)]), mean(st_bbox(nc)[c(1,3)]))
428s + #g = GetMap(center=center, zoom=6) # google
428s + par(mar = c(0,0,1,0))
428s + plot(st_transform(nc, merc), bgMap = g)
428s + 
428s + m = st_make_grid()
428s + st_crs(m) = NA_crs_
428s + m = st_segmentize(m, 2)
428s + st_crs(m) = 4326
428s + plot(m, axes = TRUE)
428s + g = st_transform(m, st_crs("+proj=ortho +lat_0=30 +lon_0=45"), check = TRUE)
428s + plot(g, axes = TRUE)
428s + 
428s + nc[[1]] = NA
428s + nc[[10]] = 1
428s + plot(nc, pal = rainbow, nbreaks = 3)
428s + plot(nc, pal = rainbow, breaks = "jenks", nbreaks = 3)
428s + plot(nc, pal = rainbow, breaks = (0:10)/3)
428s + 
428s + # logz:
428s + nc$e = 10^(nc$SID74)
428s + plot(nc["e"], logz = TRUE)
428s + 
428s + # shared key:
428s + plot(nc[c("SID74", "SID79")], key.pos = -1)
428s + plot(nc[c("BIR74", "BIR79")], key.pos = 1, logz=TRUE)
428s + }
428s 
428s Attaching package: 'dplyr'
428s 
428s The following objects are masked from 'package:stats':
428s 
428s     filter, lag
428s 
428s The following objects are masked from 'package:base':
428s 
428s     intersect, setdiff, setequal, union
428s 
433s > 
433s There were 13 warnings (use warnings() to see them)
433s BEGIN TEST read.R
433s 
433s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
433s Copyright (C) 2024 The R Foundation for Statistical Computing
433s Platform: powerpc64le-unknown-linux-gnu
433s 
433s R is free software and comes with ABSOLUTELY NO WARRANTY.
433s You are welcome to redistribute it under certain conditions.
433s Type 'license()' or 'licence()' for distribution details.
433s 
433s R is a collaborative project with many contributors.
433s Type 'contributors()' for more information and
433s 'citation()' on how to cite R or R packages in publications.
433s 
433s Type 'demo()' for some demos, 'help()' for on-line help, or
433s 'help.start()' for an HTML browser interface to help.
433s Type 'q()' to quit R.
433s 
433s > Sys.setenv(TZ="UTC")
433s > suppressPackageStartupMessages(library(sf))
433s > if ("GPKG" %in% st_drivers()$name) {
433s + 	tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", crs = 4267, quiet = TRUE)
433s + 	tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name
433s + }
433s > 
433s > tst = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) # no layer specified
433s > 
433s > # data from https://github.com/edzer/sfr/issues/6
433s > tst = st_read(system.file("shape/storms_xyz.shp", package="sf"), quiet = TRUE)
433s > class(st_geometry(tst))
433s [1] "sfc_LINESTRING" "sfc"           
433s > class(st_geometry(tst)[[1]])
433s [1] "XYZ"        "LINESTRING" "sfg"       
433s > tst = st_read(system.file("shape/storms_xyzm.shp", package="sf"), quiet = TRUE)
433s > class(st_geometry(tst))
433s [1] "sfc_LINESTRING" "sfc"           
433s > class(st_geometry(tst)[[1]])
433s [1] "XYM"        "LINESTRING" "sfg"       
433s > tst = st_read(system.file("shape/storms_xyz_feature.shp", package="sf"), quiet = TRUE)
433s > class(st_geometry(tst))
433s [1] "sfc_LINESTRING" "sfc"           
433s > class(st_geometry(tst)[[1]])
433s [1] "XYZ"        "LINESTRING" "sfg"       
433s > tst = st_read(system.file("shape/storms_xyzm_feature.shp", package="sf"), quiet = TRUE)
433s > class(st_geometry(tst))
433s [1] "sfc_LINESTRING" "sfc"           
433s > class(st_geometry(tst)[[1]])
433s [1] "XYM"        "LINESTRING" "sfg"       
433s > 
433s > if ("GPKG" %in% st_drivers()$name) { # read Int64
433s +     print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE)$AWATER)
433s +     print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE, int64_as_string = TRUE)$AWATER)
433s + }
433s [1] 1028678842
433s [1] "1028678842"
433s > 
433s > # see https://github.com/edzer/sfr/issues/45 :
433s > if ("OSM" %in% st_drivers()$name && Sys.info()['sysname'] != "Darwin") {
433s + 	osm = system.file("osm/overpass.osm", package="sf")
433s + 	osm_l = st_layers(osm)
433s + 	osm_lc = suppressWarnings(st_layers(osm, do_count = TRUE))
433s + 	osm_r = suppressWarnings(st_read(osm, "multipolygons", quiet = TRUE))
433s + }
434s > 
434s > # layer opening option:
434s > st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE,
434s + 	options = c("ADJUST_TYPE=YES", "ENCODING=CPL_ENC_UTF8"))
434s Simple feature collection with 100 features and 14 fields
434s Geometry type: MULTIPOLYGON
434s Dimension:     XY
434s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
434s Geodetic CRS:  NAD27
434s First 10 features:
434s     AREA PERIMETER CNTY_ CNTY_ID        NAME  FIPS FIPSNO CRESS_ID BIR74 SID74
434s 1  0.114     1.442  1825    1825        Ashe 37009  37009        5  1091     1
434s 2  0.061     1.231  1827    1827   Alleghany 37005  37005        3   487     0
434s 3  0.143     1.630  1828    1828       Surry 37171  37171       86  3188     5
434s 4  0.070     2.968  1831    1831   Currituck 37053  37053       27   508     1
434s 5  0.153     2.206  1832    1832 Northampton 37131  37131       66  1421     9
434s 6  0.097     1.670  1833    1833    Hertford 37091  37091       46  1452     7
434s 7  0.062     1.547  1834    1834      Camden 37029  37029       15   286     0
434s 8  0.091     1.284  1835    1835       Gates 37073  37073       37   420     0
434s 9  0.118     1.421  1836    1836      Warren 37185  37185       93   968     4
434s 10 0.124     1.428  1837    1837      Stokes 37169  37169       85  1612     1
434s    NWBIR74 BIR79 SID79 NWBIR79                       geometry
434s 1       10  1364     0      19 MULTIPOLYGON (((-81.47276 3...
434s 2       10   542     3      12 MULTIPOLYGON (((-81.23989 3...
434s 3      208  3616     6     260 MULTIPOLYGON (((-80.45634 3...
434s 4      123   830     2     145 MULTIPOLYGON (((-76.00897 3...
434s 5     1066  1606     3    1197 MULTIPOLYGON (((-77.21767 3...
434s 6      954  1838     5    1237 MULTIPOLYGON (((-76.74506 3...
434s 7      115   350     2     139 MULTIPOLYGON (((-76.00897 3...
434s 8      254   594     2     371 MULTIPOLYGON (((-76.56251 3...
434s 9      748  1190     2     844 MULTIPOLYGON (((-78.30876 3...
434s 10     160  2038     5     176 MULTIPOLYGON (((-80.02567 3...
434s > 
434s > x <- st_sf(a = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))))
434s > 
434s > try(st_layers("foo")) # cannot open datasource
434s Cannot open data source fooError : Open failed.
434s 
434s Error : Cannot open "foo"; The file doesn't seem to exist.
434s 
434s > try(st_read("foo")) # cannot open datasource
434s > try(st_read("x.gpkg", "xyz")) # cannot open layer
434s Error : Cannot open "x.gpkg"; The file doesn't seem to exist.
434s > Error in UseMethod("st_write") : 
434s   no applicable method for 'st_write' applied to an object of class "character"
434s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
434s Error in guess_driver(dns) : length(dsn) == 1 is not TRUE
434s try(st_write(c("foo", "bar")))
434s > try(st_write(x, c("foo", "bar")))
434s > try(st_write(x, "foo", driver = "foo"))
434s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
434s driver `foo' not available.
434s > if (Sys.getenv("USER") == "travis") {
434s + 	try(st_write(x, "/x", driver = "ESRI Shapefile"))
434s + 	st_write(x, "xxx.gpkg")
434s + 	st_write(x, "xxx.gpkg", append = TRUE, quiet = FALSE) # appends to layer
434s + 	y <- st_sf(b = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))))
434s + 	try(st_write(y, "xxx.gpkg"))
434s + }
434s Error : Driver not available.
434s 
434s > 
434s > geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))
434s > st_write(geom, "geom.gpkg")
434s Writing layer `geom' to data source `geom.gpkg' using driver `GPKG'
434s Writing 2 features with 0 fields and geometry type Unknown (any).
434s > st_write(geom, "geom1.gpkg", layer = "foo")
434s Writing layer `foo' to data source `geom1.gpkg' using driver `GPKG'
434s Writing 2 features with 0 fields and geometry type Unknown (any).
434s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
434s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
434s > 
434s > df <- data.frame(
434s +     a = c(0, 1, NA, -Inf, Inf),
434s +     b = c("a", "b", NA, "c", ""),
434s +     c = c(as.Date("2001-01-01"),
434s +           as.Date(c(NA, -99, 0, 1), origin = "1970-01-01")),
434s +     d = c(as.POSIXct("2001-01-01"),
434s +           as.POSIXct(c(NA, -99, 0, 1), origin = "1970-01-01")),
434s +     x = 1:5,
434s +     y = 1:5)
434s > 
434s > x  = st_as_sf(df, coords = c("x", "y"))
434s > 
434s > if ("GPKG" %in% st_drivers()$name) {
434s +  st_write(x, "x2.gpkg", quiet = TRUE)
434s +  y = st_read("x2.gpkg", quiet = TRUE)
434s +  print(y)
434s + }
434s Simple feature collection with 5 features and 4 fields
434s Geometry type: POINT
434s Dimension:     XY
434s Bounding box:  xmin: 1 ymin: 1 xmax: 5 ymax: 5
434s Projected CRS: Undefined Cartesian SRS with unknown unit
434s      a    b          c                   d        geom
434s 1    0    a 2001-01-01 2001-01-01 00:00:00 POINT (1 1)
434s 2    1    b       <NA>                <NA> POINT (2 2)
434s 3   NA <NA> 1969-09-24 1969-12-31 23:58:21 POINT (3 3)
434s 4 -Inf    c 1970-01-01 1970-01-01 00:00:00 POINT (4 4)
434s 5  Inf      1970-01-02 1970-01-01 00:00:01 POINT (5 5)
434s > 
434s > if ("SQLite" %in% st_drivers()$name && require(RSQLite)) {
434s + 	db = system.file("sqlite/meuse.sqlite", package = "sf")
434s + 	dbcon <- dbConnect(dbDriver("SQLite"), db)
434s + 	m = dbReadTable(dbcon, "meuse.sqlite")
434s + 	m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb
434s + 	print(st_sf(m), n = 3)
434s + 	# or:
434s + 	(s = st_read(dbcon, "meuse.sqlite"))[1:3,]
434s + 	dbDisconnect(dbcon)
434s + 
434s + 	db = system.file("sqlite/nc.sqlite", package = "sf")
434s + 	dbcon <- dbConnect(dbDriver("SQLite"), db)
434s + 	m = dbReadTable(dbcon, "nc.sqlite")
434s + 	m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb
434s + 	print(st_sf(m), n = 3)
434s + 	dbDisconnect(dbcon)
434s + 
434s + 	db = system.file("sqlite/b.sqlite", package = "sf") # has an INT8 field
434s + 	b = st_read(db, quiet = TRUE)
434s + 	print(b)
434s + 	b = st_read(db, int64_as_string = TRUE, quiet = TRUE)
434s + 	print(b)
434s + 
434s + 	if (.Platform$endian == "little") {
434s + 	  db = system.file("sqlite/test3.sqlite", package = "sf")
434s + 	  dbcon <- dbConnect(dbDriver("SQLite"), db)
434s + 	  m = dbReadTable(dbcon, "HighWays")
434s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
434s + 	  print(st_sf(m), n = 1)
434s + 	  m = dbReadTable(dbcon, "Towns")
434s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
434s + 	  print(st_sf(m), n = 1)
434s + 	  m = dbReadTable(dbcon, "Regions")
434s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
434s + 	  print(st_sf(m), n = 1)
434s + 	}
434s + }
434s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
434s Loading required package: RSQLite
434s Simple feature collection with 155 features and 13 fields
434s Geometry type: POINT
434s Dimension:     XY
434s Bounding box:  xmin: 178605 ymin: 329714 xmax: 181390 ymax: 333611
434s CRS:           NA
434s First 3 features:
434s   ogc_fid cadmium copper lead zinc  elev       dist   om ffreq soil lime
434s 1       1    11.7     85  299 1022 7.909 0.00135803 13.6     1    1    1
434s 2       2     8.6     81  277 1141 6.983 0.01222430 14.0     1    1    1
434s 3       3     6.5     68  199  640 7.800 0.10302900 13.0     1    1    1
434s   landuse dist.m              GEOMETRY
434s 1      Ah     50 POINT (181072 333611)
434s 2      Ah     30 POINT (181025 333558)
434s 3      Ah    150 POINT (181165 333537)
434s Simple feature collection with 100 features and 15 fields
434s Geometry type: MULTIPOLYGON
434s Dimension:     XY
434s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
434s CRS:           NA
434s First 3 features:
434s   ogc_fid  area perimeter cnty_ cnty_id      name  fips fipsno cress_id bir74
434s 1       1 0.114     1.442  1825    1825      Ashe 37009  37009        5  1091
434s 2       2 0.061     1.231  1827    1827 Alleghany 37005  37005        3   487
434s 3       3 0.143     1.630  1828    1828     Surry 37171  37171       86  3188
434s   sid74 nwbir74 bir79 sid79 nwbir79                       GEOMETRY
434s 1     1      10  1364     0      19 MULTIPOLYGON (((-81.47276 3...
434s 2     0      10   542     3      12 MULTIPOLYGON (((-81.23989 3...
434s 3     5     208  3616     6     260 MULTIPOLYGON (((-80.45634 3...
434s Integer64 values larger than 9.0072e+15 lost significance after conversion to double;
434s use argument int64_as_string = TRUE to import them lossless, as character
434s Simple feature collection with 1 feature and 2 fields
434s Geometry type: POINT
434s Dimension:     XY
434s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
434s CRS:           NA
434s   a       bigint    GEOMETRY
434s 1 1 4.611686e+18 POINT (0 1)
434s Simple feature collection with 1 feature and 2 fields
434s Geometry type: POINT
434s Dimension:     XY
434s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
434s CRS:           NA
434s   a              bigint    GEOMETRY
434s 1 1 4611686018427387904 POINT (0 1)
434s Simple feature collection with 10 features and 2 fields
434s Geometry type: LINESTRING
434s Dimension:     XY
434s Bounding box:  xmin: 645003 ymin: 4822568 xmax: 748805.6 ymax: 4992001
434s Projected CRS: WGS 84 / UTM zone 32N
434s First 1 features:
434s   PK_UID    Name                       Geometry
434s 1      1 Unknown LINESTRING (668540.7 485826...
434s Simple feature collection with 8101 features and 6 fields
434s Geometry type: POINT
434s Dimension:     XY
434s Bounding box:  xmin: 319224 ymin: 3934674 xmax: 1308585 ymax: 5214373
434s Projected CRS: WGS 84 / UTM zone 32N
434s First 1 features:
434s   PK_UID    Name Peoples LocalCounc County Region                 Geometry
434s 1      1 Brozolo     435          1      0      0 POINT (427002.8 4996361)
434s Simple feature collection with 10 features and 2 fields
434s Geometry type: MULTIPOLYGON
434s Dimension:     XY
434s Bounding box:  xmin: 378359.8 ymin: 4198234 xmax: 1211486 ymax: 5036803
434s Projected CRS: WGS 84 / UTM zone 32N
434s First 1 features:
434s   PK_UID   Name                       Geometry
434s 1      1 VENETO MULTIPOLYGON (((752912.3 50...
434s > 
434s > csv = system.file("csv/pt.csv", package = "sf")
434s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_real_)
434s [1] TRUE
434s > identical(st_read(quiet = TRUE, csv, int64_as_string = TRUE, stringsAsFactors = FALSE,
434s + 	options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_character_)
434s [1] TRUE
434s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int32[3], NA_integer_)
434s [1] TRUE
434s > 
434s > if ("GML" %in% st_drivers()$name) {
434s +   gml = system.file("gml/fmi_test.gml", package = "sf")
434s +   print(dim(st_read(gml, quiet = TRUE, use_stream = FALSE)))
434s +   gml = system.file("gml/20170930_OB_530964_UKSH.xml.gz", package = "sf")
434s +   print(dim(st_read(gml, layer = "Parcely", quiet = TRUE, use_stream = FALSE)))
434s +   print(dim(st_read(gml, layer = "Parcely", int64_as_string=TRUE, quiet = TRUE, use_stream = FALSE)))
434s + }
434s [1] 22 11
434s [1] 644  25
435s Warning messages:
435s [1] 644  25
435s 1: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
435s   GDAL Message 1: Field with same name (identifier) already exists in (PointTimeSeriesObservation). Skipping newer ones
435s 2: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
435s   GDAL Message 1: Field with same name (name) already exists in (PointTimeSeriesObservation). Skipping newer ones
435s > 
435s > # logical:
435s > if ("GPKG" %in% st_drivers()$name) {
435s + 	tst = read_sf(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name
435s + 	tst$bool = tst$NWBIR79 > 800 # logical
435s + 	tst$bool[1:3] = NA
435s + 	write_sf(tst, "tst__.gpkg")
435s + 	tst2 = read_sf("tst__.gpkg")
435s + 	stopifnot(identical(tst$bool, tst2$bool))
435s + }
435s > 
435s > # spatial filter:
435s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf"))
435s > wkt = st_as_text(st_geometry(nc[1,]))
435s > wkt
435s [1] "MULTIPOLYGON (((-81.47276 36.23436, -81.54084 36.27251, -81.56198 36.27359, -81.63306 36.34069, -81.74107 36.39178, -81.69828 36.47178, -81.7028 36.51934, -81.67 36.58965, -81.3453 36.57286, -81.34754 36.53791, -81.32478 36.51368, -81.31332 36.4807, -81.26624 36.43721, -81.26284 36.40504, -81.24069 36.37942, -81.23989 36.36536, -81.26424 36.35241, -81.32899 36.3635, -81.36137 36.35316, -81.36569 36.33905, -81.35413 36.29972, -81.36745 36.2787, -81.40639 36.28505, -81.41233 36.26729, -81.43104 36.26072, -81.45289 36.23959, -81.47276 36.23436)))"
435s > nc_filtered = read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = wkt)
435s > try(read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = "wrong"))
435s Cannot create geometry from: wrong
435s > Error : wkt parse error.
435s 
435s nc_filtered$NAME
435s [1] "Watauga"   "Ashe"      "Wilkes"    "Alleghany"
435s > 
435s BEGIN TEST roundtrip.R
435s 
435s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
435s Copyright (C) 2024 The R Foundation for Statistical Computing
435s Platform: powerpc64le-unknown-linux-gnu
435s 
435s R is free software and comes with ABSOLUTELY NO WARRANTY.
435s You are welcome to redistribute it under certain conditions.
435s Type 'license()' or 'licence()' for distribution details.
435s 
435s R is a collaborative project with many contributors.
435s Type 'contributors()' for more information and
435s 'citation()' on how to cite R or R packages in publications.
435s 
435s Type 'demo()' for some demos, 'help()' for on-line help, or
435s 'help.start()' for an HTML browser interface to help.
435s Type 'q()' to quit R.
435s 
435s > #library(rgdal2)
435s > #openOGRLayer("PG:dbname=postgis" , "meuse2")
435s > 
435s > suppressPackageStartupMessages(library(sf))
435s > options(rgdal_show_exportToProj4_warnings = "none")
435s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
435s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
435s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
435s > pol1 = list(outer, hole1, hole2)
435s > pol2 = list(outer + 12, hole1 + 12)
435s > pol3 = list(outer + 24)
435s > mp = list(pol1,pol2,pol3)
435s > mp1 = st_multipolygon(mp)
435s > sf = st_sf(a=1, st_sfc(mp1))
435s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
435s +  a = as(sf, "Spatial")
435s +  print(class(a))
435s +  b = st_as_sf(a)
435s +  a2 = as(a, "SpatialPolygonsDataFrame")
435s +  print(all.equal(a, a2)) # round-trip
435s + 
435s +  b1 = as(a, "sf")
435s +  print(all.equal(b, b1))
435s +  b = st_as_sfc(a)
435s +  b1 = as(a, "sfc")
435s +  print(all.equal(b, b1))
435s + }
435s [1] "SpatialPolygonsDataFrame"
435s attr(,"package")
435s [1] "sp"
435s [1] TRUE
435s [1] TRUE
435s [1] TRUE
435s > 
435s > # SpatialMultiPoints
435s > if (require(sp, quietly = TRUE)) {
435s + suppressWarnings(RNGversion("3.5.3"))
435s + set.seed(1331)
435s + # example(SpatialMultiPoints, ask = FALSE, echo = FALSE) # loads mpdf
435s + cl1 = cbind(rnorm(3, 10), rnorm(3, 10))
435s + cl2 = cbind(rnorm(5, 10), rnorm(5,  0))
435s + cl3 = cbind(rnorm(7,  0), rnorm(7, 10))
435s + mpdf = SpatialMultiPointsDataFrame(list(a=cl1, b=cl2, c=cl3), data.frame(a = 1:3, row.names=c("a", "b", "c")))
435s + m = st_as_sf(mpdf)
435s + all.equal(as(m, "Spatial"), mpdf) # TRUE
435s + 
435s + demo(meuse, ask = FALSE, echo = FALSE)
435s + #meuse = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
435s + pol.grd = as(meuse.grid, "SpatialPolygonsDataFrame")
435s + #meuse.grd = spTransform(meuse.grid, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
435s + #pol.grd = spTransform(pol.grd, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
435s + #meuse.area = spTransform(meuse.area, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
435s + #meuse.riv = spTransform(meuse.riv, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
435s + #summary(st_as_sf(meuse))
435s + #summary(st_as_sf(meuse.grd))
435s + #x <- st_as_sf(meuse.grid) # don't print: CRS variations.
435s + #summary(st_as_sf(meuse.area))
435s + #summary(st_as_sf(meuse.riv))
435s + #summary(st_as_sf(as(meuse.riv, "SpatialLines")))
435s + #summary(st_as_sf(pol.grd))
435s + #summary(st_as_sf(as(pol.grd, "SpatialLinesDataFrame")))
435s + 
435s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", quiet = TRUE)
435s + all.equal(nc, st_as_sf(as(nc, "Spatial")))
435s + st_crs(nc) == st_crs(st_as_sf(as(nc, "Spatial")))
435s + 
435s + detach("package:sp")
435s + }
436s > 
436s BEGIN TEST sample.R
436s 
436s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
436s Copyright (C) 2024 The R Foundation for Statistical Computing
436s Platform: powerpc64le-unknown-linux-gnu
436s 
436s R is free software and comes with ABSOLUTELY NO WARRANTY.
436s You are welcome to redistribute it under certain conditions.
436s Type 'license()' or 'licence()' for distribution details.
436s 
436s R is a collaborative project with many contributors.
436s Type 'contributors()' for more information and
436s 'citation()' on how to cite R or R packages in publications.
436s 
436s Type 'demo()' for some demos, 'help()' for on-line help, or
436s 'help.start()' for an HTML browser interface to help.
436s Type 'q()' to quit R.
436s 
436s > suppressPackageStartupMessages(library(sf))
437s > bb = st_bbox(c(xmin=0, ymin=1, xmax=3, ymax=2))
437s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons")
437s > plot(xx, border = 'green', main = "pointy topped")
437s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points")
437s > plot(x, add = TRUE)
437s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners")
437s > plot(x, col = 'orange', add = TRUE)
437s > plot(st_as_sfc(bb), add = TRUE, border = 'red')
437s > st_overlaps(xx) %>% 
437s + 	lengths() %>% 
437s + 	sum()
437s [1] 0
437s > 
437s > st_as_sfc(bb) %>%
437s + 	st_difference(st_union(xx)) %>%
437s + 	st_area()
437s numeric(0)
437s > 
437s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons", flat_topped = TRUE)
437s > plot(xx, border = 'green', main = "flat topped")
437s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points", flat_topped = TRUE)
437s > plot(x, add = TRUE)
437s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners", flat_topped = TRUE)
437s > plot(x, col = 'orange', add = TRUE)
437s > plot(st_as_sfc(bb), add = TRUE, border = 'red')
437s > st_overlaps(xx) %>% 
437s + 	lengths() %>% 
437s + 	sum()
437s [1] 0
437s > 
437s > st_as_sfc(bb) %>%
437s + 	st_difference(st_union(xx)) %>%
437s + 	st_area()
437s numeric(0)
437s > 
437s BEGIN TEST sfc.R
437s 
437s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
437s Copyright (C) 2024 The R Foundation for Statistical Computing
437s Platform: powerpc64le-unknown-linux-gnu
437s 
437s R is free software and comes with ABSOLUTELY NO WARRANTY.
437s You are welcome to redistribute it under certain conditions.
437s Type 'license()' or 'licence()' for distribution details.
437s 
437s R is a collaborative project with many contributors.
437s Type 'contributors()' for more information and
437s 'citation()' on how to cite R or R packages in publications.
437s 
437s Type 'demo()' for some demos, 'help()' for on-line help, or
437s 'help.start()' for an HTML browser interface to help.
437s Type 'q()' to quit R.
437s 
437s > suppressPackageStartupMessages(library(sf))
437s > 
437s > p = st_point(c(1/3,1/6))
437s > st_sfc(p, precision = 1000)
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
437s CRS:           NA
437s Precision:     1000 
437s > st_as_sfc(st_as_binary(st_sfc(p, precision = 0L)))
437s POINT (0.3333333 0.1666667)
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
437s CRS:           NA
437s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000)))
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.333 ymin: 0.167 xmax: 0.333 ymax: 0.167
437s CRS:           NA
437s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000000)))
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.333333 ymin: 0.166667 xmax: 0.333333 ymax: 0.166667
437s CRS:           NA
437s > st_as_sfc(st_as_binary(st_sfc(p, precision = 10L)))
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.3 ymin: 0.2 xmax: 0.3 ymax: 0.2
437s CRS:           NA
437s > st_as_sfc(st_as_binary(st_sfc(p, precision = -1)))
437s Geometry set for 1 feature 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
437s CRS:           NA
437s > 
437s > d = data.frame(a = 1:2)
437s > d$geom = c("POINT(0 0)", "POINT(1 1)")
437s > 
437s > st_as_sf(d, wkt = "geom")
437s Simple feature collection with 2 features and 1 field
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s POINT (0.3333333 0.1666667)
437s POINT (0.333 0.167)
437s POINT (0.333333 0.166667)
437s POINT (0.3 0.2)
437s POINT (0.3333333 0.1666667)
437s POINT (0 0)
437s POINT (1 1)
437s POINT (0 0)
437s POINT (1 1)
437s POLYGON ((0 0, 1 1, 0 1, 0 0))
437s POINT (0 0)
437s POINT (1 1)
437s POLYGON ((0 0, 1 1, 0 1, 0 0))
437s   a        geom
437s 1 1 POINT (0 0)
437s 2 2 POINT (1 1)
437s > st_as_sf(d, wkt = 2)
437s Simple feature collection with 2 features and 1 field
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s   a        geom
437s 1 1 POINT (0 0)
437s 2 2 POINT (1 1)
437s > st_as_sf(d, wkt = "geom", remove = FALSE)
437s Simple feature collection with 2 features and 2 fields
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s   a       geom    geometry
437s 1 1 POINT(0 0) POINT (0 0)
437s 2 2 POINT(1 1) POINT (1 1)
437s > 
437s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)"))
437s Geometry set for 2 features 
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"))
437s Geometry set for 3 features 
437s Geometry type: GEOMETRY
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s > st_as_sfc(character(0))
437s Geometry set for 0 features 
437s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
437s CRS:           NA
437s > x = st_as_sfc(character(0), 4326)
437s > y = st_as_sfc(character(0), crs = 4326)
437s > all.equal(x, y)
437s [1] TRUE
437s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"),
437s + 	"+proj=longlat +datum=WGS84")
437s Geometry set for 3 features 
437s Geometry type: GEOMETRY
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s Geodetic CRS:  +proj=longlat +datum=WGS84
437s > dg = st_as_sf(d, wkt = "geom")
437s > print(dg, n = 1)
437s Simple feature collection with 2 features and 1 field
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
437s CRS:           NA
437s First 1 features:
437s   a        geom
437s 1 1 POINT (0 0)
437s > head(st_as_sf(d, wkt = "geom"), 1)
437s Simple feature collection with 1 feature and 1 field
437s Geometry type: POINT
437s Dimension:     XY
437s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 0
437s CRS:           NA
437s   a        geom
437s 1 1 POINT (0 0)
437s > 
437s > d$geom = st_as_sfc(d$geom)
437s > d1 = d
437s > attr(d1, "sf_col") = "geom"
437s > st_geometry(d1) = d$geom
437s > 
437s > d$geometry = d$geom # second geometry list-column
437s > if (require(testthat, quietly = TRUE)) {
437s +  expect_warning(st_geometry(d) <- d$geom)
437s + }
438s > d
438s Simple feature collection with 2 features and 1 field
438s Active geometry column: geom
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
438s CRS:           NA
438s   a        geom    geometry
438s 1 1 POINT (0 0) POINT (0 0)
438s 2 2 POINT (1 1) POINT (1 1)
438s > POINT (0 1)
438s POINT (0 1)
438s Warning message:
438s st_crs<- : replacing crs does not reproject data; use st_transform for that 
438s MULTIPOINT ((0 1))
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(mp, "POINT") : point from first coordinate only
438s MULTIPOINT ((0 1), (2 2))
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(x[[1]], to, ...) : point from first coordinate only
438s MULTIPOINT ((0 1), (2 2))
438s MULTIPOINT ((0 1))
438s Warning message:
438s In st_cast.GEOMETRYCOLLECTION(st_geometrycollection(list(p, mp)),  :
438s   only first part of geometrycollection is retained
438s POINT (0 1)
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
438s Warning message:
438s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
438s POINT (0 1)
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
438s POINT (0 1)
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
438s MULTIPOINT ((0 1))
438s MULTIPOINT ((0 1))
438s LINESTRING (0 0, 1 1, 2 1)
438s LINESTRING (0 0, 1 1, 2 1)
438s MULTILINESTRING ((0 0, 1 1, 2 1))
438s MULTILINESTRING ((0 0, 1 1, 2 1))
438s POLYGON ((0 0, 1 1, 0 1, 0 0))
438s POLYGON ((0 0, 1 1, 0 1, 0 0))
438s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0)))
438s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0)))
438s POINT (0 1)
438s MULTIPOINT ((0 1))
438s POINT (0 1)
438s POINT (0 1)
438s Warning message:
438s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
438s Error in st_polygonize.sfc(st_sfc(x)) : 
438s   inherits(x, "sfc_LINESTRING") || inherits(x, "sfc_MULTILINESTRING") is not TRUE
438s Error in StopZ(zm) : 
438s   sp supports Z dimension only for POINT and MULTIPOINT.
438s use `st_zm(...)` to coerce to XY dimensions
438s 
438s > x = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326)
438s > # don't warn when replacing crs with identical value:
438s > st_sfc(x, crs = 4326)
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s Geodetic CRS:  WGS 84
438s > y = st_sfc(x, crs = "+proj=longlat +datum=WGS84 +no_defs")
438s > # but do when it changes:
438s > y = st_sfc(x, crs = 3857)
438s > 
438s > p = st_point(0:1)
438s > st_cast(p, "MULTIPOINT")
438s > mp = st_multipoint(rbind(c(0,1), c(2,2)))
438s > st_cast(mp, "POINT")
438s > st_cast(mp, "MULTIPOINT")
438s > 
438s > # geometry collection to its elements:
438s > st_cast(st_geometrycollection(list(mp)), "POINT")
438s > st_cast(st_geometrycollection(list(mp)), "MULTIPOINT")
438s > st_cast(st_geometrycollection(list(p,mp)), "MULTIPOINT")
438s > 
438s > mp = st_multipoint(rbind(c(0,1)))
438s > x = st_sfc(p, mp)
438s > st_cast(x, "POINT")
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > 
438s > sf = st_sf(a = 3:2, geom = x)
438s > st_cast(sf, "POINT")
438s Simple feature collection with 2 features and 1 field
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s   a        geom
438s 1 3 POINT (0 1)
438s 2 2 POINT (0 1)
438s > 
438s > 
438s > x %>% st_cast("POINT")
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > 
438s > # points:
438s > mp = st_multipoint(rbind(c(0,1))) # single-point multipoint
438s > st_sfc(p,mp) %>% st_cast("POINT")
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > st_sfc(p,mp) %>% st_cast("MULTIPOINT")
438s Geometry set for 2 features 
438s Geometry type: MULTIPOINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > 
438s > # lines:
438s > pts = rbind(c(0,0), c(1,1), c(2,1))
438s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("LINESTRING")
438s Geometry set for 2 features 
438s Geometry type: LINESTRING
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 1
438s CRS:           NA
438s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("MULTILINESTRING")
438s Geometry set for 2 features 
438s Geometry type: MULTILINESTRING
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 1
438s CRS:           NA
438s > 
438s > # polygons:
438s > pts = rbind(c(0,0), c(1,1), c(0,1), c(0,0))
438s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("POLYGON")
438s Geometry set for 2 features 
438s Geometry type: POLYGON
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
438s CRS:           NA
438s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("MULTIPOLYGON")
438s Geometry set for 2 features 
438s Geometry type: MULTIPOLYGON
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
438s CRS:           NA
438s > 
438s > 
438s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% st_cast()
438s Geometry set for 2 features 
438s Geometry type: GEOMETRY
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>%
438s + 	st_cast() %>%
438s + 	st_cast("POINT")
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s > 
438s > p = rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0))
438s > pol = st_polygon(list(p))
438s > # plot(pol)
438s > try(plot(st_polygonize(pol))) # --> breaks
438s > st_length(st_sfc(st_point(c(0,0))))
438s [1] 0
438s > 
438s > try(as(st_sfc(st_linestring(matrix(1:9,3))), "Spatial"))
438s > 
438s > # check conus is present:
438s > x = st_sfc(st_point(c(-90,35)), st_point(c(-80,36)),
438s + 	crs = "+proj=longlat +datum=NAD27")
438s > y = st_transform(x, 3857)
438s > 
438s > sf_extSoftVersion()[1:3]
438s     GEOS     GDAL   proj.4 
438s "3.12.1"  "3.8.5"  "9.4.0" 
438s > 
438s > # Ops.sfc:
438s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))))
438s > ls * 2
438s Geometry set for 1 feature 
438s Geometry type: LINESTRING
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 2
438s CRS:           NA
438s LINESTRING (0 0, 0 2)
438s > ls - 2
438s Geometry set for 1 feature 
438s Geometry type: LINESTRING
438s Dimension:     XY
438s Bounding box:  LINESTRING (-2 -2, -2 -1)
438s xmin: -2 ymin: -2 xmax: -2 ymax: -1
438s CRS:           NA
438s > (ls + 2) %% 3
438s Geometry set for 1 feature 
438s Geometry type: LINESTRING
438s Dimension:     XY
438s Bounding box:  LINESTRING (2 2, 2 0)
438s xmin: 2 ymin: 0 xmax: 2 ymax: 2
438s CRS:           NA
438s > ls / ls
438s Geometry set for 1 feature  (with 1 geometry empty)
438s Geometry type: GEOMETRYCOLLECTION
438s Dimension:     XY
438s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
438s GEOMETRYCOLLECTION EMPTY
438s CRS:           NA
438s > p_ = st_point(0:1)
438s > ll = st_sfc(ls[[1]], p_)
438s > ll & st_sfc(p_)
438s Geometry set for 2 features 
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
438s CRS:           NA
438s POINT (0 1)
438s POINT (0 1)
438s > ll | st_sfc(p_)
438s Geometry set for 2 features 
438s Geometry type: GEOMETRY
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 1
438s CRS:           NA
438s LINESTRING (0 0, 0 1)
438s > ll %/% st_sfc(p_)
438s Geometry set for 2 features  (with 1 geometry empty)
438s Geometry type: GEOMETRY
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 1
438s CRS:           NA
438s > ll == st_sfc(p_)
438s [1] FALSE  TRUE
438s > ll != st_sfc(p_)
438s [1]  TRUE FALSE
438s > 
438s > 
438s > str(x)
438s sfc_POINT of length 2; first list element:  'XY' num [1:2] -90 35
438s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
438s > str(nc)
438s Classes 'sf' and 'data.frame':	100 obs. of  15 variables:
438s  $ AREA     : num  0.114 0.061 0.143 0.07 0.153 0.097 0.062 0.091 0.118 0.124 ...
438s  $ PERIMETER: num  1.44 1.23 1.63 2.97 2.21 ...
438s  $ CNTY_    : num  1825 1827 1828 1831 1832 ...
438s  $ CNTY_ID  : num  1825 1827 1828 1831 1832 ...
438s  $ NAME     : chr  "Ashe" "Alleghany" "Surry" "Currituck" ...
438s POINT (0 1)
438s LINESTRING (0 0, 0 1)
438s GEOMETRYCOLLECTION EMPTY
438s  $ FIPS     : chr  "37009" "37005" "37171" "37053" ...
438s  $ FIPSNO   : num  37009 37005 37171 37053 37131 ...
438s  $ CRESS_ID : int  5 3 86 27 66 46 15 37 93 85 ...
438s  $ BIR74    : num  1091 487 3188 508 1421 ...
438s  $ SID74    : num  1 0 5 1 9 7 0 0 4 1 ...
438s  $ NWBIR74  : num  10 10 208 123 1066 ...
438s  $ BIR79    : num  1364 542 3616 830 1606 ...
438s  $ SID79    : num  0 3 6 2 3 5 2 2 2 5 ...
438s  $ NWBIR79  : num  19 12 260 145 1197 ...
438s  $ geometry :sfc_MULTIPOLYGON of length 100; first list element: List of 1
438s   ..$ :List of 1
438s   .. ..$ : num [1:27, 1:2] -81.5 -81.5 -81.6 -81.6 -81.7 ...
438s   ..- attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg"
438s  - attr(*, "sf_column")= chr "geometry"
438s  - attr(*, "agr")= Factor w/ 3 levels "constant","aggregate",..: NA NA NA NA NA NA NA NA NA NA ...
438s   ..- attr(*, "names")= chr [1:14] "AREA" "PERIMETER" "CNTY_" "CNTY_ID" ...
438s > bb = st_as_sfc(st_bbox(nc))
438s > format(st_bbox(nc))
438s [1] "((-84.32385,33.88199),(-75.45698,36.58965))"
438s > 
438s > st_agr("constant")
438s [1] constant
438s Levels: constant aggregate identity
438s > st_agr()
438s [1] <NA>
438s Levels: constant aggregate identity
438s > x <- st_sf(a = 1:2, b = 3:4, geom = x, agr = c("constant", "aggregate"))
438s > y <- x %>% st_set_agr("constant")
438s > y
438s Simple feature collection with 2 features and 2 fields
438s Attribute-geometry relationships: constant (2)
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: -90 ymin: 35 xmax: -80 ymax: 36
438s Geodetic CRS:  +proj=longlat +datum=NAD27
438s   a b           geom
438s 1 1 3 POINT (-90 35)
438s 2 2 4 POINT (-80 36)
438s > 
438s > sf1 <- st_sf(a = c("x", "y"), geom = st_sfc(st_point(3:4), st_point(3:4)))
438s > sf1[names(sf1)]
438s Simple feature collection with 2 features and 1 field
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 3 ymin: 4 xmax: 3 ymax: 4
438s CRS:           NA
438s   a        geom
438s 1 x POINT (3 4)
438s 2 y POINT (3 4)
438s > 
438s > st_bbox(sf1)
438s xmin ymin xmax ymax 
438s    3    4    3    4 
438s > bb = st_bbox(nc)
438s > bb
438s      xmin      ymin      xmax      ymax 
438s -84.32385  33.88199 -75.45698  36.58965 
438s > st_crs(bb)
438s Coordinate Reference System:
438s   User input: NAD27 
438s   wkt:
438s GEOGCRS["NAD27",
438s     DATUM["North American Datum 1927",
438s         ELLIPSOID["Clarke 1866",6378206.4,294.978698213898,
438s             LENGTHUNIT["metre",1]]],
438s     PRIMEM["Greenwich",0,
438s         ANGLEUNIT["degree",0.0174532925199433]],
438s     CS[ellipsoidal,2],
438s         AXIS["latitude",north,
438s             ORDER[1],
438s             ANGLEUNIT["degree",0.0174532925199433]],
438s         AXIS["longitude",east,
438s             ORDER[2],
438s             ANGLEUNIT["degree",0.0174532925199433]],
438s     ID["EPSG",4267]]
438s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = st_crs(4326))
438s xmin ymin xmax ymax 
438s 16.1 48.6 16.6 47.9 
438s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = 4326)
438s xmin ymin xmax ymax 
438s 16.1 48.6 16.6 47.9 
438s > 
438s > bb$xrange
438s      xmin      xmax 
438s -84.32385 -75.45698 
438s > bb$yrange
438s     ymin     ymax 
438s 33.88199 36.58965 
438s > bb$xmin
438s      xmin 
438s -84.32385 
438s > bb$ymin
438s     ymin 
438s 33.88199 
438s > bb$xmax
438s      xmax 
438s -75.45698 
438s > bb$ymax
438s     ymax 
438s 36.58965 
438s > try(bb$foo)
438s Error in `$.bbox`(bb, foo) : unsupported name
438s > 
438s > # merge:
438s > a = data.frame(a = 1:3, b = 5:7)
438s > st_geometry(a) = st_sfc(st_point(c(0,0)), st_point(c(1,1)), st_point(c(2,2)))
438s > b = data.frame(x = c("a", "b", "c"), b = c(2,5,6))
438s > merge(a, b)
438s Simple feature collection with 2 features and 3 fields
438s Geometry type: POINT
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
438s CRS:           NA
438s   b a x    geometry
438s 1 5 1 b POINT (0 0)
438s 2 6 2 c POINT (1 1)
438s > merge(a, b, all = TRUE)
438s Simple feature collection with 4 features and 3 fields (with 1 geometry empty)
438s Geometry type: GEOMETRY
438s Dimension:     XY
438s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 2
438s CRS:           NA
438s   b  a    x                 geometry
438s 1 2 NA    a GEOMETRYCOLLECTION EMPTY
438s 2 5  1    b              POINT (0 0)
438s 3 6  2    c              POINT (1 1)
438s 4 7  3 <NA>              POINT (2 2)
438s > 
438s > if (require(dplyr, quietly = TRUE)) {
438s + # joins:
438s + inner_join(a, b)
438s + left_join(a, b)
438s + right_join(a, b)
438s + full_join(a, b)
438s + semi_join(a, b)
438s + anti_join(a, b)
438s + left_join(a, data.frame(b, geometry = 1), by = "b")
438s + }
439s 
439s Attaching package: 'dplyr'
439s 
439s The following object is masked from 'package:testthat':
439s 
439s     matches
439s 
439s The following objects are masked from 'package:stats':
439s 
439s     filter, lag
439s 
439s The following objects are masked from 'package:base':
439s 
439s     intersect, setdiff, setequal, union
439s 
439s Joining with `by = join_by(b)`
439s Joining with `by = join_by(b)`
439s Joining with `by = join_by(b)`
439s Joining with `by = join_by(b)`
439s Joining with `by = join_by(b)`
439s Joining with `by = join_by(b)`
439s Simple feature collection with 3 features and 4 fields
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 2
439s CRS:           NA
439s   a b    x geometry.y  geometry.x
439s 1 1 5    b          1 POINT (0 0)
439s 2 2 6    c          1 POINT (1 1)
439s 3 3 7 <NA>         NA POINT (2 2)
439s > 
439s > # st_joins:
439s > a = st_sf(a = 1:3,
439s +  geom = st_sfc(st_point(c(1,1)), st_point(c(2,2)), st_point(c(3,3))))
439s > b = st_sf(a = 11:14,
439s +  geom = st_sfc(st_point(c(10,10)), st_point(c(2,2)), st_point(c(2,2)), st_point(c(3,3))))
439s > st_join(a, b)
439s Simple feature collection with 4 features and 2 fields
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
439s CRS:           NA
439s     a.x a.y        geom
439s 1     1  NA POINT (1 1)
439s 2     2  12 POINT (2 2)
439s 2.1   2  13 POINT (2 2)
439s 3     3  14 POINT (3 3)
439s > st_join(a, b, left = FALSE)
439s Simple feature collection with 3 features and 2 fields
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 2 ymin: 2 xmax: 3 ymax: 3
439s CRS:           NA
439s     a.x a.y        geom
439s 2     2  12 POINT (2 2)
439s 2.1   2  13 POINT (2 2)
439s 3     3  14 POINT (3 3)
439s > # st_join, largest = TRUE:
439s > nc <- st_transform(st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE), 2264)
439s > gr = st_sf(
439s +     label = apply(expand.grid(1:10, LETTERS[10:1])[,2:1], 1, paste0, collapse = " "),
439s + 	geom = st_make_grid(st_as_sfc(st_bbox(nc))))
439s > gr$col = sf.colors(10, categorical = TRUE, alpha = .3)
439s > # cut, to check, NA's work out:
439s > gr = gr[-(1:30),]
439s > st_join(nc, gr, largest = TRUE)
439s Simple feature collection with 100 features and 16 fields
439s Geometry type: MULTIPOLYGON
439s Dimension:     XY
439s Bounding box:  xmin: 406265 ymin: 48359.7 xmax: 3052877 ymax: 1044143
439s Projected CRS: NAD83 / North Carolina (ftUS)
439s First 10 features:
439s     AREA PERIMETER CNTY_ CNTY_ID        NAME  FIPS FIPSNO CRESS_ID BIR74 SID74
439s 1  0.114     1.442  1825    1825        Ashe 37009  37009        5  1091     1
439s 2  0.061     1.231  1827    1827   Alleghany 37005  37005        3   487     0
439s 3  0.143     1.630  1828    1828       Surry 37171  37171       86  3188     5
439s 4  0.070     2.968  1831    1831   Currituck 37053  37053       27   508     1
439s 5  0.153     2.206  1832    1832 Northampton 37131  37131       66  1421     9
439s 6  0.097     1.670  1833    1833    Hertford 37091  37091       46  1452     7
439s 7  0.062     1.547  1834    1834      Camden 37029  37029       15   286     0
439s 8  0.091     1.284  1835    1835       Gates 37073  37073       37   420     0
439s 9  0.118     1.421  1836    1836      Warren 37185  37185       93   968     4
439s 10 0.124     1.428  1837    1837      Stokes 37169  37169       85  1612     1
439s    NWBIR74 BIR79 SID79 NWBIR79 label       col                       geometry
439s 1       10  1364     0      19  A  4 #fb80724d MULTIPOLYGON (((1270813 913...
439s 2       10   542     3      12  A  4 #fb80724d MULTIPOLYGON (((1340553 959...
439s 3      208  3616     6     260  A  5 #80b1d34d MULTIPOLYGON (((1570586 910...
439s 4      123   830     2     145  A 10 #bc80bd4d MULTIPOLYGON (((2881206 948...
439s 5     1066  1606     3    1197  A  8 #fccde54d MULTIPOLYGON (((2525700 911...
439s 6      954  1838     5    1237  A  9 #d9d9d94d MULTIPOLYGON (((2665112 911...
439s 7      115   350     2     139  A 10 #bc80bd4d MULTIPOLYGON (((2881206 948...
439s 8      254   594     2     371  A  9 #d9d9d94d MULTIPOLYGON (((2717988 951...
439s 9      748  1190     2     844  A  8 #fccde54d MULTIPOLYGON (((2203888 914...
439s 10     160  2038     5     176  A  5 #80b1d34d MULTIPOLYGON (((1697618 911...
439s Warning message:
439s attribute variables are assumed to be spatially constant throughout all geometries 
439s > 
439s > # rbind:
439s > x = st_sf(a = 1:2, geom = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326))
439s > rbind(x, x, x)
439s Simple feature collection with 6 features and 1 field
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
439s Geodetic CRS:  WGS 84
439s   a        geom
439s 1 1 POINT (0 1)
439s 2 2 POINT (0 1)
439s 3 1 POINT (0 1)
439s 4 2 POINT (0 1)
439s 5 1 POINT (0 1)
439s 6 2 POINT (0 1)
439s > nc2 = rbind(nc[1:50, ], nc[51:100, ])
439s > all.equal(nc, nc2)
439s [1] TRUE
439s > 
439s > # st_sample:
439s > suppressWarnings(RNGversion("3.5.3"))
439s > set.seed(131)
439s > options(digits=6)
439s > x = st_sfc(st_polygon(list(rbind(c(0,1),c(90,1),c(90,90),c(0,90),c(0,1)))), crs = st_crs(4326))
439s >   (p <- st_sample(x, 10))
439s Geometry set for 10 features 
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 11.2448 ymin: 3.16385 xmax: 82.3451 ymax: 60.1703
439s Geodetic CRS:  WGS 84
439s First 5 geometries:
439s POINT (18.5793 25.2416)
439s POINT (11.2448 20.8596)
439s POINT (26.3946 60.1703)
439s POINT (33.8202 19.146)
439s POINT (76.1712 32.1029)
439s >   p <- st_sample(x[[1]], 10) # sfg method
439s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat:
439s > p <- st_sample(x, 10)
439s > x = st_sfc(st_polygon(list(rbind(c(-180,-90),c(180,-90),c(180,90),c(-180,90),c(-180,-90)))),
439s +  crs=st_crs(4326))
439s > #FIXME:
439s > # if (sf_extSoftVersion()[["proj.4"]] >= "4.9.0") # lwgeom breaks on this
439s > #   (p <- st_sample(x, 10))
439s > pt = st_multipoint(matrix(1:20,,2))
439s > st_sample(p, 3)
439s Geometry set for 1 feature 
439s Geometry type: MULTIPOINT
439s Dimension:     XY
439s Bounding box:  xmin: 41.0557 ymin: 27.8024 xmax: 80.9558 ymax: 65.5424
439s CRS:           NA
439s > try(st_sample(p, 3.3))
439s MULTIPOINT ((57.2118 52.329), (80.9558 65.5424)...
439s Geometry set for 1 feature 
439s Geometry type: MULTIPOINT
439s Dimension:     XY
439s Bounding box:  xmin: 19.3415 ymin: 9.17624 xmax: 80.9558 ymax: 65.5424
439s CRS:           NA
439s MULTIPOINT ((19.3415 18.6622), (57.1389 9.17624...
439s Warning message:
439s In st_sample.sfc(p, 3.3) : size is not an integer
439s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
439s +  st_linestring(rbind(c(0,0),c(.1,0))),
439s +  st_linestring(rbind(c(0,1),c(.1,1))),
439s +  st_linestring(rbind(c(2,2),c(2,2.00001))))
439s > st_sample(ls, 80)
439s Geometry set for 4 features  (with 1 geometry empty)
439s Geometry type: MULTIPOINT
439s Dimension:     XY
439s Bounding box:  xmin: 0 ymin: 0 xmax: 0.0914728 ymax: 1
439s CRS:           NA
439s MULTIPOINT ((0 0.137868), (0 0.777635), (0 0.40...
439s MULTIPOINT ((0.0914728 0), (0.073852 0), (0.003...
439s MULTIPOINT ((0.0488222 1), (0.0716508 1), (0.08...
439s MULTIPOINT EMPTY
439s > st_sample(nc[1:2,], size = c(10,20))
439s POINT (1264558 935852)
439s POINT (1256623 949369)
439s POINT (1222665 972624)
439s Geometry set for 30 features 
439s Geometry type: POINT
439s Dimension:     XY
439s Bounding box:  xmin: 1216510 ymin: 935852 xmax: 1428880 ymax: 1031490
439s Projected CRS: NAD83 / North Carolina (ftUS)
439s First 5 geometries:
439s POINT (1333528 968263)
439s POINT (1310837 958630)
439s > # try with LINES, LongLat, should generate a warning:
439s > nc[1:2,] %>% st_transform(4326) %>% st_cast("MULTILINESTRING") %>% st_sample(size = c(10,20))
439s although coordinates are longitude/latitude, st_sample assumes that they are
439s planar
439s although coordinates are longitude/latitude, st_sample assumes that they are
439s planar
439s Geometry set for 2 features 
439s Geometry type: MULTIPOINT
439s Dimension:     XY
439s Bounding box:  xmin: -81.6893 ymin: 36.2491 xmax: -80.914 ymax: 36.5726
439s MULTIPOINT ((-81.2401 36.3717), (-81.6893 36.36...
439s Geodetic CRS:  WGS 84
439s MULTIPOINT ((-81.2629 36.4076), (-81.1375 36.56...
439s > st_sample(ls, 80, type = "regular")
439s Geometry set for 4 features  (with 1 geometry empty)
439s Geometry type: MULTIPOINT
439s MULTIPOINT ((0 0.0104441), (0 0.0254442), (0 0....
439s MULTIPOINT ((0.000452334 0), (0.0154525 0), (0....
439s Dimension:     XY
439s Bounding box:  xmin: 0 ymin: 0 xmax: 0.095454 ymax: 1
439s CRS:           NA
439s MULTIPOINT ((0.00545321 1), (0.0204533 1), (0.0...
439s > MULTIPOINT EMPTY
439s p_sample = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = FALSE))
440s > lengths(p_sample)
440s  [1] 104 106 110  96  98 120  87 105 104  99
440s > p_sample_exact = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = TRUE))
440s > lengths(p_sample_exact)
440s  [1] 100 100 100 100 100 100 100 100 100 100
440s > #plot(nc$geometry[1])
440s > #plot(p_sample[[1]], add = TRUE)
440s > #plot(p_sample_exact[[1]], add = TRUE)
440s > 
440s > if (require(dplyr, quietly = TRUE)) {
440s +  #class(st_bind_cols(nc, as.data.frame(nc)[1:3]))
440s +  print(class(dplyr::bind_cols(nc, as.data.frame(nc)[1:3])))
440s + }
440s New names:
440s * `AREA` -> `AREA...1`
440s * `PERIMETER` -> `PERIMETER...2`
440s * `CNTY_` -> `CNTY_...3`
440s * `AREA` -> `AREA...16`
440s * `PERIMETER` -> `PERIMETER...17`
440s * `CNTY_` -> `CNTY_...18`
440s [1] "sf"         "data.frame"
440s > class(rbind(nc, nc))
440s [1] "sf"         "data.frame"
440s > class(cbind(nc, nc))
440s [1] "sf"         "data.frame"
440s > 
440s > x = st_sfc(st_point(0:1), st_point(2:3))
440s > x[c(NA,1,NA,2,NA)]
440s Geometry set for 5 features  (with 3 geometries empty)
440s Geometry type: POINT
440s Dimension:     XY
440s Bounding box:  xmin: 0 ymin: 1 xmax: 2 ymax: 3
440s CRS:           NA
440s POINT EMPTY
440s POINT (0 1)
440s POINT EMPTY
440s POINT (2 3)
440s POINT EMPTY
440s > 
440s > # jitter
440s > pts = st_centroid(st_geometry(nc))
440s > plot(pts)
440s > plot(st_jitter(pts, .05), add = TRUE, col = 'red')
440s > plot(st_geometry(nc))
440s > plot(st_jitter(st_geometry(nc), factor = .01), add = TRUE, col = '#ff8888')
440s > st_jitter(st_sfc(st_point(0:1)), amount = .1)
440s Geometry set for 1 feature 
440s Geometry type: POINT
440s Dimension:     XY
440s Bounding box:  xmin: -0.0500922 ymin: 0.992953 xmax: -0.0500922 ymax: 0.992953
440s CRS:           NA
440s > 
440s POINT (-0.0500922 0.992953)
440s > # st_bbox:
440s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(raster, quietly = TRUE)) {
440s + demo(meuse, ask = FALSE, echo = FALSE)
440s + suppressWarnings(st_bbox(meuse))
440s + crs = suppressWarnings(st_crs(meuse))
440s + suppressWarnings(st_bbox(raster(meuse.grid)))
440s + st_bbox(extent(raster()))
440s + }
442s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
442s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
443s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
445s 
445s Attaching package: 'raster'
445s 
445s The following object is masked from 'package:dplyr':
445s 
445s     select
445s 
445s xmin ymin xmax ymax 
445s -180  -90  180   90 
445s > 
445s > # st_to_s2
445s > if (FALSE) { # stops working with GDAL 2.3.0 / PROJ 5.0.1:
445s +  x = sf:::st_to_s2(nc)
445s +  x1 = st_geometry(x)
445s +  cc = st_coordinates(x1)
445s +  summary(sqrt(cc[,1]^2+cc[,2]^2+cc[,3]^2))
445s + }
445s > 
445s > # check_ring_dir
445s > m = rbind(c(0,0), c(0,1), c(1,1), c(1,0), c(0,0))
445s > mi = m[nrow(m):1,]
445s > pol = st_polygon(list(m * 10, m + .5, mi + 1.5, mi + 3.5, m + 5, mi + 6.5))
445s > st_sfc(pol)
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
445s CRS:           NA
445s > x = st_sfc(pol, check_ring_dir=TRUE)
445s > y = st_sf(a = 1, geom = st_sfc(pol), check_ring_dir=TRUE)
445s > str(x)
445s sfc_POLYGON of length 1; first list element: List of 6
445s  $ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
445s  $ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
445s  $ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
445s  $ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
445s  $ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
445s  $ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
445s  - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
445s > x = st_sfc(st_polygon(), st_polygon(), check_ring_dir=TRUE)
445s > str(x)
445s sfc_POLYGON of length 2; first list element:  list()
445s  - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
445s > # empty ring/zero area:
445s > x = st_sfc(st_polygon(list(m[c(1,3,1),])), check_ring_dir=TRUE)
445s > 
445s > mp = st_multipolygon(list(pol, pol))
445s > try(x <- st_sfc(mp, st_polygon(), check_ring_dir=TRUE))
445s > x <- st_sfc(mp, pol) %>% st_cast("MULTIPOLYGON") %>% st_sfc(check_ring_dir=TRUE)
445s > x
445s Geometry set for 2 features 
445s Geometry type: MULTIPOLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
445s CRS:           NA
445s > str(x)
445s sfc_MULTIPOLYGON of length 2; first list element: List of 2POLYGON ((0 0, 0 10, 10 10, 10 0, 0 0), (0.5 0....
445s Error in check_ring_dir(lst) : 
445s   check_ring_dir: not supported for class sfc_GEOMETRY
445s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (...
445s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (...
445s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0))
445s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0))
445s 
445s  $ :List of 6
445s   ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
445s   ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
445s   ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
445s   ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
445s   ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
445s   ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
445s   ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
445s  $ :List of 6
445s   ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
445s   ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
445s   ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
445s   ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
445s   ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
445s   ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
445s   ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
445s  - attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg"
445s > 
445s > x = st_sfc(st_linestring(rbind(c(-179,0),c(179,0))), crs = 4326)
445s > st_wrap_dateline(st_sf(a = 1, geometry = x))
445s Simple feature collection with 1 feature and 1 field
445s Geometry type: MULTILINESTRING
445s Dimension:     XY
445s Bounding box:  xmin: -180 ymin: 0 xmax: 180 ymax: 0
445s Geodetic CRS:  WGS 84
445s   a                       geometry
445s 1 1 MULTILINESTRING ((-179 0, -...
445s > st_wrap_dateline(x)
445s Geometry set for 1 feature 
445s Geometry type: MULTILINESTRING
445s Dimension:     XY
445s Bounding box:  xmin: -180 ymin: 0 xmax: 180 ymax: 0
445s Geodetic CRS:  WGS 84
445s > st_wrap_dateline(x[[1]])
445s > 
445s > geo <- c("{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68152563269095,36.43764870908927]}",
445s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67408758213843,36.43366018922779]}",
445s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67708346361097,36.44208638659282]}",
445s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67886661944996,36.44110273135671]}",
445s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68089232041565,36.44173155205561]}")
445s > st_as_sfc(geo, GeoJSON = TRUE)
445s Geometry set for 5 features 
445s Geometry type: POINT
445s Dimension:     XY
445s Bounding box:  xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421
445s Geodetic CRS:  WGS 84
445s POINT (-118.682 36.4376)
445s POINT (-118.674 36.4337)
445s POINT (-118.677 36.4421)
445s POINT (-118.679 36.4411)
445s POINT (-118.681 36.4417)
445s > st_as_sfc(geo, GeoJSON = TRUE, crs = 4326)
445s Geometry set for 5 features 
445s Geometry type: POINT
445s Dimension:     XY
445s Bounding box:  xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421
445s Geodetic CRS:  WGS 84
445s POINT (-118.682 36.4376)
445s POINT (-118.674 36.4337)
445s POINT (-118.677 36.4421)
445s POINT (-118.679 36.4411)
445s POINT (-118.681 36.4417)
445s > 
445s > st_as_sfc(st_as_binary(st_sfc(st_point(0:1)))[[1]], crs = 4326)
445s Geometry set for 1 feature 
445s Geometry type: POINT
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
445s Geodetic CRS:  WGS 84
445s > 
445s > x = nc
445s > x$geom = NULL
445s > class(x)
445s [1] "sf"         "data.frame"
445s > 
445s > st_as_sfc(list(st_point(0:1)), crs = 4326)
445s Geometry set for 1 feature 
445s Geometry type: POINT
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
445s Geodetic CRS:  WGS 84
445s > 
445s > # crop:
445s > box = c(xmin = 0, ymin = 0, xmax = 1, ymax = 1)
445s > 
445s > pol = st_sfc(st_buffer(st_point(c(.5, .5)), .65))
445s > pol_sf = st_sf(a=1, geom=pol)
445s > 
445s > st_crop(pol, box)
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
445s CRS:           NA
445s > st_crop(pol, st_bbox(box))
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
445s CRS:           NA
445s > st_crop(pol_sf, box)
445s Simple feature collection with 1 feature and 1 field
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
445s CRS:           NA
445s   a                           geom
445s 1 1 POLYGON ((0.983044 0.065065...
445s > st_crop(pol_sf, st_bbox(box))
445s Simple feature collection with 1 feature and 1 field
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
445s CRS:           NA
445s   a                           geom
445s 1 1 POLYGON ((0.983044 0.065065...
445s > 
445s > # new sample methods:
445s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat:
445s > p <- st_sample(x, 10, type = "regular")
445s > p <- st_sample(x, 10, type = "hexagonal")
445s > 
445s > all.equal(st_drop_geometry(pol_sf), st_set_geometry(pol_sf, NULL))
445s [1] TRUE
445s > 
445s > # https://github.com/r-spatial/sf/issues/1024
445s > shape1 <-st_sfc(st_polygon(list(rbind(c(0,0), c(1,0), c(3,2), c(2,4), c(1,4), c(0,0)))))
445s > shape2 <- st_sfc(st_polygon())
445s > shape3 <- st_sfc(st_polygon())
445s > 
445s > shape4 = st_intersection(shape2, shape3) # has zero features
445s > 
445s > st_difference(shape1, shape4)
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
445s CRS:           NA
445s > st_difference(shape4, shape1)
445s POINT (0 1)
445s POINT (0 1)
445s POLYGON ((0.983044 0.0650651, 0.959619 0.040380...
445s POLYGON ((0.983044 0.0650651, 0.959619 0.040380...
445s Warning message:
445s attribute variables are assumed to be spatially constant throughout all geometries 
445s Warning message:
445s attribute variables are assumed to be spatially constant throughout all geometries 
445s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
445s Geometry set for 0 features 
445s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
445s CRS:           NA
445s > st_sym_difference(shape1, shape4)
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
445s CRS:           NA
445s > st_union(shape1, shape4)
445s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
445s CRS:           NA
445s > st_union(shape4, shape1)
445s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
445s Geometry set for 1 feature 
445s Geometry type: POLYGON
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
445s CRS:           NA
445s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
445s > 
445s > # transform empty:
445s > tr = st_sf(geom=st_sfc()) %>% st_set_crs(3587) %>% st_transform(4326)
445s > 
445s > # NA values are converted to empty; #1114:
445s > x <- data.frame(name=LETTERS)
445s > y <- data.frame(name=LETTERS[1:13], letters[14:26])
445s > y$geometry <- st_sfc(st_point(c(0,0)))
445s > y <- st_sf(y)
445s > out = merge(x, y, all.x=TRUE)
445s > class(out)
445s [1] "data.frame"
445s > 
445s > st_as_sf(st_sfc(st_point(0:1)))
445s Simple feature collection with 1 feature and 0 fields
445s Geometry type: POINT
445s Dimension:     XY
445s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
445s CRS:           NA
445s             x
445s 1 POINT (0 1)
445s > 
445s BEGIN TEST sfg.R
445s 
445s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
445s Copyright (C) 2024 The R Foundation for Statistical Computing
445s Platform: powerpc64le-unknown-linux-gnu
445s 
445s R is free software and comes with ABSOLUTELY NO WARRANTY.
445s You are welcome to redistribute it under certain conditions.
445s Type 'license()' or 'licence()' for distribution details.
445s 
445s R is a collaborative project with many contributors.
445s Type 'contributors()' for more information and
445s 'citation()' on how to cite R or R packages in publications.
445s 
445s Type 'demo()' for some demos, 'help()' for on-line help, or
445s 'help.start()' for an HTML browser interface to help.
445s Type 'q()' to quit R.
445s 
446s > suppressPackageStartupMessages(library(sf))
446s > c(st_point(1:2), st_point(5:6))
446s MULTIPOINT ((1 2), (5 6))
446s > c(st_point(1:2), st_multipoint(matrix(5:8,2)))
446s MULTIPOINT ((1 2), (5 7), (6 8))
446s > c(st_multipoint(matrix(1:4,2)), st_multipoint(matrix(5:8,2)))
446s > c(st_linestring(matrix(1:6,3)), st_linestring(matrix(11:16,3)))
446s MULTIPOINT ((1 3), (2 4), (5 7), (6 8))
446s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16))
446s > c(st_linestring(matrix(1:6,3)), st_multilinestring(list(matrix(11:16,3))))
446s MULTILINESTRING ((11 14, 12 15, 13 16), (1 4, 2 5, 3 6))
446s > c(st_multilinestring(list(matrix(1:6,3))), st_multilinestring(list(matrix(11:16,3))))
446s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16))
446s > MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0)))
446s pl = list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))
446s > c(st_polygon(pl), st_polygon(pl))
446s > c(st_polygon(pl), st_multipolygon(list(pl)))
446s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0)))
446s > c(st_linestring(matrix(1:6,3)), st_point(1:2))
446s GEOMETRYCOLLECTION (LINESTRING (1 4, 2 5, 3 6), POINT (1 2))
446s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))),
446s +   st_geometrycollection(list(st_multilinestring(list(matrix(11:16,3))))))
446s GEOMETRYCOLLECTION (POINT (1 2), LINESTRING (1 4, 2 5, 3 6), MULTILINESTRING ((11 14, 12 15, 13 16)))
446s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))),
446s +   st_multilinestring(list(matrix(11:16,3))), st_point(5:6), 
446s +   st_geometrycollection(list(st_point(10:11))))
446s GEOMETRYCOLLECTION (MULTILINESTRING ((11 14, 12 15, 13 16)), POINT (5 6), POINT (1 2), LINESTRING (1 4, 2 5, 3 6), POINT (10 11)> head(st_point(0:1), 2)
446s )
446s POINT (0 1)
446s > 
446s > # Ops.sfg:
446s > ls = st_linestring(rbind(c(0,0),c(0,1)))
446s > pt = st_point(1:0)
446s > ls | pt
446s > ls / pt
446s > ls & pt
446s > ls %/% pt
446s > # arith:
446s > ls + pt
446s > ls - pt
446s > ls * pt
446s > ls / pt
446s > # unary:
446s > +pt
446s > -pt
446s > try(!pt)
446s > 
446s BEGIN TEST spatstat.R
446s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0))
446s LINESTRING (0 0, 0 1)
446s GEOMETRYCOLLECTION EMPTY
446s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0))
446s LINESTRING (1 0, 1 1)
446s LINESTRING (-1 0, -1 1)
446s LINESTRING (0 0, 0 0)
446s LINESTRING (0 0, 0 1)
446s POINT (1 0)
446s POINT (-1 0)
446s Error in Ops.sfg(pt) : unary ! not defined for "sfg" objects
446s 
446s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
446s Copyright (C) 2024 The R Foundation for Statistical Computing
446s Platform: powerpc64le-unknown-linux-gnu
446s 
446s R is free software and comes with ABSOLUTELY NO WARRANTY.
446s You are welcome to redistribute it under certain conditions.
446s Type 'license()' or 'licence()' for distribution details.
446s 
446s R is a collaborative project with many contributors.
446s Type 'contributors()' for more information and
446s 'citation()' on how to cite R or R packages in publications.
446s 
446s Type 'demo()' for some demos, 'help()' for on-line help, or
446s 'help.start()' for an HTML browser interface to help.
446s Type 'q()' to quit R.
446s 
446s > suppressPackageStartupMessages(library(sf))
446s > if (require(spatstat.random, quietly = TRUE)) {
446s + 
446s + data(chicago)
446s + st_as_sf(chicago)
446s + # ppp:
446s + g = gorillas
446s + st_as_sf(g)
446s + marks(g) = NULL
446s + st_as_sf(g)
446s + 
446s + # multipolygon: https://github.com/r-spatial/sf/issues/1161
446s + window = read_sf(system.file("shape/nc.shp", package = "sf")) %>%
446s +   st_transform(32119)
446s + 
446s + win = spatstat.geom::as.owin(window)
446s + 
446s + set.seed(1331)
446s + pp2a = runifpoint(n = 50, win = win)
446s + print(st_as_sf(pp2a))
446s + 
446s + # st_sample going the spatstat way
446s + x <- sf::st_sfc(sf::st_polygon(list(rbind(c(0, 0), c(10, 0), c(10, 10), c(0, 0)))))
446s + try(pts <- st_sample(x, type = "thomas"))
446s + try(pts <- st_sample(x, kappa = 1, mu = 10, type = "Thomas"))
446s + # points expected
446s + set.seed(1331)
446s + pts <- st_sample(x, kappa = 1, mu = 10, scale = 0.1, type = "Thomas")
446s + #plot(x)
446s + #plot(pts, add = TRUE)
446s + pts
446s + 
446s + # see https://github.com/r-spatial/sf/issues/1233
446s + # png("/tmp/spa%03d.png")
446s + 
446s + p1 = st_point(0:1)
446s + p2 = st_point(1:2)
446s + p3 = st_point(c(-1,2))
446s + p = st_sfc(p1, p2, p3)
446s + as.ppp(p)
446s + try(as.ppp(st_set_crs(p, 4326)))
446s + 
446s + sf = st_sf(geom = p)
446s + try(as.ppp(sf))
446s + sf = st_sf(a = 1:3, geom = p)
446s + as.ppp(sf)
446s + sf = st_sf(a = 1:3, b=3:1, geom = p)
446s + as.ppp(sf) # warns
446s + 
446s + w = st_as_sfc(st_bbox(st_sfc(p1, p2)))
446s + sf = st_sf(a = 1:3, geom = p)
446s + (p0 = rbind(st_sf(a = 0, geom = w), sf))
446s + suppressWarnings(try(as.ppp(p0))) # errors: one point outside window
446s + 
446s + w = st_as_sfc(st_bbox(p))
446s + sf = st_sf(a = 1:3, geom = p)
446s + (p0 = rbind(st_sf(a = 0, geom = w), sf))
446s + as.ppp(p0)
446s + 
446s + # as.owin.sf, as.owin.sfc_*
446s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), check_ring_dir = TRUE, quiet = TRUE)
446s + try(as.owin(nc)) # should be projected
446s + nc = st_transform(nc, 32119)
446s + plot(as.owin(nc), col = 'grey')
446s + plot(as.owin(st_geometry(nc)), col = 'grey')
446s + 
446s + sq = rbind(c(-1,-1), c(1, -1), c(1,1), c(-1,1), c(-1,-1))
446s + pol = st_polygon(list(0.5 * sq, sq[5:1,] * 0.45)) # w hole
446s + plot(as.owin(pol), col = 'grey')
446s + plot(as.owin(st_sfc(pol)), col = 'grey')
446s + mpol = st_multipolygon(list(
446s + 	list(sq, sq[5:1,] * 0.9),
447s + 	list(sq * 2, sq[5:1,] * 1.8)))
447s + plot(as.owin(mpol), col = 'grey')
447s + plot(as.owin(st_sfc(mpol)), col = 'grey')
447s + plot(as.owin(st_sfc(pol, mpol)), col = 'grey')
447s + plot(as.owin(st_sf(a=1:2, st_sfc(pol, mpol))), col = 'grey')
447s + (o = as.owin(st_sf(a=1:2, st_sfc(pol, mpol))))
447s + st_as_sfc(o)
447s + 
447s + plot(st_as_sfc(o), col = 'blue', main = 'st_as_sfc(o)')
447s + plot(st_as_sf(o), col = 'blue', main = 'st_as_sf(o)')
447s + 
447s + data(japanesepines)
447s + st_as_sf(japanesepines) # warns about multiplier
447s + jp = rescale(japanesepines)
447s + st_as_sf(jp) # No warning
447s + 
447s + data(nztrees)
447s + qNZ <- quadratcount(nztrees, nx=4, ny=3)
447s + ts = as.tess(qNZ)
447s + plot(st_as_sfc(ts))
447s + 
447s + ls = st_linestring(rbind(c(0,0), c(1,1), c(2,0)))
447s + plot(as.psp(ls))
447s + mls = st_multilinestring(list(rbind(c(0,0), c(1,1), c(2,0)), rbind(c(3,3), c(4,2))))
447s + plot(as.psp(mls))
447s + 
447s + plot(as.psp(st_sfc(ls)))
447s + plot(as.psp(st_sfc(mls)))
447s + plot(as.psp(st_sfc(ls, mls)))
447s + 
447s + sf = st_sf(st_cast(st_sfc(ls, mls), "MULTILINESTRING"), marks = 1:2, foo = 2:1)
447s + as.psp(sf) # picks marks itself
447s + as.psp(sf, marks = 5:1)
447s + 
447s + (x = st_as_sf(as.psp(sf)))
447s + (y = st_as_sfc(as.psp(sf)))
447s + all.equal(st_geometry(x), y)
447s + }
447s spatstat.geom 3.2-9
447s spatstat.random 3.2-3
448s Simple feature collection with 51 features and 1 field
448s Geometry type: GEOMETRY
448s Dimension:     XY
448s Bounding box:  xmin: 123829.8 ymin: 14740.06 xmax: 930518.6 ymax: 318255.5
448s CRS:           NA
448s First 10 features:
448s     label                           geom
448s 1  window MULTIPOLYGON (((886135.8 31...
448s 2   point      POINT (339121.1 257811.6)
449s 3   pointError in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
449s   rthomas is not an exported function from spatstat.random.
449s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
449s   The spatstat function rThomas did not return a valid result. Consult the help file.
449s Error message from spatstat:
449s Error in spatstat_fun(..., win = spatstat.geom::as.owin(x)) : 
449s   argument "scale" is missing, with no default
449s 
449s Error : Only projected coordinates may be converted to spatstat class objects
449s       POINT (827440.4 246568.3)
449s 4   point      POINT (451339.2 207943.6)
449s 5   point      POINT (268749.7 203323.4)
449s 6   point      POINT (516676.5 198556.1)
449s 7   point        POINT (692366 238643.1)
449s 8   point      POINT (843278.5 287241.6)
449s 9   point      POINT (648477.7 235466.6)
449s 10  point        POINT (852593 267248.3)
449s Error in `marks<-.ppp`(`*tmp*`, value = value) : 
449s   number of rows of data frame != number of points
449s In addition: Warning message:
449s In as.ppp.sf(sf) : only first attribute column is used for marks
449s Error : Only projected coordinates may be converted to spatstat class objects
449s Warning message:
449s [1] TRUE
449s In st_as_sfc.owin(spatstat.geom::as.owin(x)) :
449s   The spatstat object has an measurement unit multiplier != 1. Consider rescaling before converting.
449s > 
449s BEGIN TEST stars.R
449s 
449s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
449s Copyright (C) 2024 The R Foundation for Statistical Computing
449s Platform: powerpc64le-unknown-linux-gnu
449s 
449s R is free software and comes with ABSOLUTELY NO WARRANTY.
449s You are welcome to redistribute it under certain conditions.
449s Type 'license()' or 'licence()' for distribution details.
449s 
449s R is a collaborative project with many contributors.
449s Type 'contributors()' for more information and
449s 'citation()' on how to cite R or R packages in publications.
449s 
449s Type 'demo()' for some demos, 'help()' for on-line help, or
449s 'help.start()' for an HTML browser interface to help.
449s Type 'q()' to quit R.
449s 
449s > suppressPackageStartupMessages(library(sf))
449s > 
449s > tif = system.file("tif/geomatrix.tif", package = "sf")
449s > 
449s > gdal_metadata(tif)
449s [1] "AREA_OR_POINT=Point"
449s > gdal_metadata(tif, NA_character_)
449s [1] "IMAGE_STRUCTURE"     "DERIVED_SUBDATASETS" ""                   
449s > try(gdal_metadata(tif, "wrongDomain")) 
449s Error in gdal_metadata(tif, "wrongDomain") : 
449s   domain_item[1] not found in available metadata domains
449s > gdal_metadata(tif, c("IMAGE_STRUCTURE"))
449s $INTERLEAVE
449s [1] "BAND"
449s 
449s attr(,"class")
449s [1] "gdal_metadata"
449s > try(length(gdal_metadata(tif, c("DERIVED_SUBDATASETS")))) # fails on Fedora 26
449s [1] 2
449s > 
449s > if (require(stars, quietly = TRUE)) {
449s +   tif = system.file("tif/geomatrix.tif", package = "sf")
449s +   r = read_stars(tif)
449s +   d = (st_dimensions(r))
449s +   gt =  c(1841001.75, 1.5, -5, 1144003.25, -5, -1.5)
449s +   x1 = st_as_sfc(d, as_points = TRUE, use_cpp = TRUE, geotransform = gt)
449s +   x2 = st_as_sfc(d, as_points = TRUE, use_cpp = FALSE, geotransform = gt)
449s +   print(identical(x1, x2))
449s +   y1 = st_as_sfc(d, as_points = FALSE, use_cpp = TRUE, geotransform = gt)
449s +   y2 = st_as_sfc(d, as_points = FALSE, use_cpp = FALSE, geotransform = gt)
449s +   print(identical(y1, y2))
449s + 
449s +   # rectilinear grid:
449s +   m = matrix(1:20, nrow = 5, ncol = 4)
449s +   x = c(0,0.5,1,2,4,5)
449s +   y = c(0.3,0.5,1,2,2.2)
449s +   r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y, .raster = c("x", "y")))
449s +   print(st_as_sfc(st_dimensions(r), as_points = TRUE))
449s +   print(st_as_sfc(st_dimensions(r), as_points = FALSE))
449s + 
449s +   # curvilinear grid:
449s +   lon = st_as_stars(matrix(1:5, 4, 5, byrow = TRUE))
449s +   lat = st_as_stars(matrix(1:4, 4, 5))
449s +   ll = c(X1 = lon, X2 = lat)
449s +   curv = st_as_stars(st_as_stars(t(m)), curvilinear = setNames(ll, c("X1", "X2")))
449s +   print(st_as_sfc(st_dimensions(curv), as_points = TRUE))
449s +   print(st_as_sfc(st_dimensions(curv), as_points = FALSE))
449s + 
449s +   demo(nc, echo = FALSE, ask = FALSE)
449s +   print(x <- st_rasterize(nc)) # default grid:
449s +   print(p <- st_as_sf(x, as_points = FALSE)) # polygonize: follow raster boundaries
449s +   print(p <- st_as_sf(x, as_points = FALSE, use_integer = TRUE)) # polygonize integers: follow raster boundaries
449s +   print(try(p <- st_as_sf(x, as_points = TRUE))) # polygonize: contour, requies GDAL >= 2.4.0
449s +   if (utils::packageVersion("stars") >= "0.2-1") {
449s +     write_stars(read_stars(tif), tempfile(fileext = ".tif"))
449s +     write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"))
449s +     write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"), chunk_size = c(200,200))
449s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"))
449s +   	write_stars(na.tif, "na.tif")
449s +   	write_stars(na.tif, "na.tif", NA_value = -999)
449s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999)
449s +   	write_stars(na.tif, "na.tif")
449s +   	write_stars(na.tif, "na.tif", NA_value = -999)
449s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999, proxy = TRUE)
449s +   	write_stars(na.tif, "na.tif")
449s +   	write_stars(na.tif, "na.tif", NA_value = -999)
449s +   }
449s +   # https://github.com/mtennekes/tmap/issues/368
449s +   if (utils::packageVersion("stars") > "0.4-0") {
449s +     lc = system.file('tif/lc.tif', package = 'stars')
449s +     if (lc != "") {
449s + 	    r = read_stars(lc, RAT = "Land Cover Class")
449s + 	    r <- droplevels(r)
449s +     }
449s +   }
449s + }
450s [1] TRUE
450s [1] TRUE
450s Geometry set for 20 features 
450s Geometry type: POINT
450s Dimension:     XY
450s Bounding box:  xmin: 0.25 ymin: 0.4 xmax: 4.5 ymax: 2.1
450s CRS:           NA
450s First 5 geometries:
450s POINT (0.25 0.4)
450s POINT (0.75 0.4)
450s POINT (1.5 0.4)
450s POINT (3 0.4)
450s POINT (4.5 0.4)
450s Geometry set for 20 features 
450s Geometry type: POLYGON
450s Dimension:     XY
450s Bounding box:  xmin: 0 ymin: 0.3 xmax: 5 ymax: 2.2
450s CRS:           NA
450s First 5 geometries:
450s Geometry set for 20 features 
450s Geometry type: POINT
450s Dimension:     XY
450s Bounding box:  xmin: 1 ymin: 1 xmax: 5 ymax: 4
450s Geodetic CRS:  WGS 84 (CRS84)
450s First 5 geometries:
450s Geometry set for 20 features 
450s Geometry type: POLYGON
450s Dimension:     XY
450s Bounding box:  xmin: 0.5 ymin: 0.5 xmax: 5.5 ymax: 4.5
450s Geodetic CRS:  WGS 84 (CRS84)
450s First 5 geometries:
450s POLYGON ((0 0.3, 0.5 0.3, 0.5 0.5, 0 0.5, 0 0.3))
450s POLYGON ((0.5 0.3, 1 0.3, 1 0.5, 0.5 0.5, 0.5 0...
450s POLYGON ((1 0.3, 2 0.3, 2 0.5, 1 0.5, 1 0.3))
450s POLYGON ((2 0.3, 4 0.3, 4 0.5, 2 0.5, 2 0.3))
450s POLYGON ((4 0.3, 5 0.3, 5 0.5, 4 0.5, 4 0.3))
450s POINT (1 1)
450s POINT (1 2)
450s POINT (1 3)
450s POINT (1 4)
450s POINT (2 1)
450s POLYGON ((0.5 0.5, 0.5 1.5, 1.5 1.5, 1.5 0.5, 0...
450s POLYGON ((0.5 1.5, 0.5 2.5, 1.5 2.5, 1.5 1.5, 0...
450s POLYGON ((0.5 2.5, 0.5 3.5, 1.5 3.5, 1.5 2.5, 0...
450s POLYGON ((0.5 3.5, 0.5 4.5, 1.5 4.5, 1.5 3.5, 0...
450s POLYGON ((1.5 0.5, 1.5 1.5, 2.5 1.5, 2.5 0.5, 1...
450s stars object with 2 dimensions and 12 attributes
450s attribute(s):
450s                 Min.   1st Qu.    Median         Mean   3rd Qu.      Max.  NA's
450s AREA           0.042     0.108     0.142 1.451932e-01     0.181     0.241 30904
450s PERIMETER      0.999     1.461     1.716 1.786110e+00     2.004     3.640 30904
450s CNTY_       1825.000  1907.000  1989.000 1.998403e+03  2085.000  2241.000 30904
450s CNTY_ID     1825.000  1907.000  1989.000 1.998403e+03  2085.000  2241.000 30904
450s FIPSNO     37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904
450s CRESS_ID       1.000    25.000    51.000 5.071206e+01    77.000   100.000 30904
450s BIR74        248.000  1323.000  2648.000 3.791637e+03  4139.000 21588.000 30904
450s SID74          0.000     3.000     5.000 7.891985e+00    10.000    44.000 30904
450s NWBIR74        1.000   297.000   844.000 1.246210e+03  1396.000  8027.000 30904
450s BIR79        319.000  1606.000  3108.000 4.852046e+03  5400.000 30757.000 30904
450s SID79          0.000     3.000     6.000 9.584098e+00    13.000    57.000 30904
450s NWBIR79        3.000   360.000  1058.000 1.604642e+03  1524.000 11631.000 30904
450s dimension(s):
450s   from  to offset    delta refsys point x/y
450s x    1 461 -84.32  0.01925  NAD27 FALSE [x]
450s y    1 141  36.59 -0.01925  NAD27 FALSE [y]
451s Simple feature collection with 34097 features and 12 fields
451s Geometry type: POLYGON
451s Dimension:     XY
451s Bounding box:  xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965
451s Geodetic CRS:  NAD27
451s First 10 features:
451s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
451s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s    SID79 NWBIR79                       geometry
451s 1      0      19 POLYGON ((-81.66757 36.5896...
451s 2      0      19 POLYGON ((-81.64833 36.5896...
451s 3      0      19 POLYGON ((-81.62908 36.5896...
451s 4      0      19 POLYGON ((-81.60983 36.5896...
451s 5      0      19 POLYGON ((-81.59058 36.5896...
451s 6      0      19 POLYGON ((-81.57133 36.5896...
451s 7      0      19 POLYGON ((-81.55208 36.5896...
451s 8      0      19 POLYGON ((-81.53283 36.5896...
451s 9      0      19 POLYGON ((-81.51359 36.5896...
451s 10     0      19 POLYGON ((-81.49434 36.5896...
451s Simple feature collection with 34097 features and 12 fields
451s Geometry type: POLYGON
451s Dimension:     XY
451s Bounding box:  xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965
451s Geodetic CRS:  NAD27
451s First 10 features:
451s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
451s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
451s    SID79 NWBIR79                       geometry
451s 1      0      19 POLYGON ((-81.66757 36.5896...
451s 2      0      19 POLYGON ((-81.64833 36.5896...
451s 3      0      19 POLYGON ((-81.62908 36.5896...
451s 4      0      19 POLYGON ((-81.60983 36.5896...
451s 5      0      19 POLYGON ((-81.59058 36.5896...
451s 6      0      19 POLYGON ((-81.57133 36.5896...
451s 7      0      19 POLYGON ((-81.55208 36.5896...
451s 8      0      19 POLYGON ((-81.53283 36.5896...
451s 9      0      19 POLYGON ((-81.51359 36.5896...
451s 10     0      19 POLYGON ((-81.49434 36.5896...
452s Simple feature collection with 34097 features and 12 fields
452s Geometry type: POINT
452s Dimension:     XY
452s Bounding box:  xmin: -84.31423 ymin: 33.88525 xmax: -75.45997 ymax: 36.58003
452s Geodetic CRS:  NAD27
452s First 10 features:
452s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
452s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
452s    SID79 NWBIR79                   geometry
452s 1      0      19 POINT (-81.65795 36.58003)
452s 2      0      19  POINT (-81.6387 36.58003)
452s 3      0      19 POINT (-81.61945 36.58003)
452s 4      0      19  POINT (-81.6002 36.58003)
452s 5      0      19 POINT (-81.58096 36.58003)
452s 6      0      19 POINT (-81.56171 36.58003)
452s 7      0      19 POINT (-81.54246 36.58003)
452s 8      0      19 POINT (-81.52321 36.58003)
452s 9      0      19 POINT (-81.50396 36.58003)
452s 10     0      19 POINT (-81.48471 36.58003)
452s 
452s 
452s 
452s 
452s > 
452s > r = gdal_read(tif)
452s > gt = c(0,1,0,0,0,1)
452s > gdal_inv_geotransform(gt)
452s [1] 0 1 0 0 0 1
452s > rc = expand.grid(x=1:3, y = 1:3)
452s > #(xy = xy_from_colrow(rc, gt))
452s > #xy_from_colrow(xy, gt, inverse = TRUE)
452s > crs <- gdal_crs(tif)
452s > 
452s > try(gdal_metadata("foo"))
452s [1] NA
452s > gdal_metadata(tif)
452s [1] "AREA_OR_POINT=Point"
452s > 
452s BEGIN TEST testthat.R
452s 
452s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
452s Copyright (C) 2024 The R Foundation for Statistical Computing
452s Platform: powerpc64le-unknown-linux-gnu
452s 
452s R is free software and comes with ABSOLUTELY NO WARRANTY.
452s You are welcome to redistribute it under certain conditions.
452s Type 'license()' or 'licence()' for distribution details.
452s 
452s R is a collaborative project with many contributors.
452s Type 'contributors()' for more information and
452s 'citation()' on how to cite R or R packages in publications.
452s 
452s Type 'demo()' for some demos, 'help()' for on-line help, or
452s 'help.start()' for an HTML browser interface to help.
452s Type 'q()' to quit R.
452s 
452s > if (require(testthat, quietly = TRUE)) {
452s +  suppressPackageStartupMessages(library(sf))
452s +  test_check("sf")
452s + }
453s Coordinate Reference System:
453s   User input: EPSG:4326 
453s   wkt:
453s GEOGCRS["WGS 84",
453s     ENSEMBLE["World Geodetic System 1984 ensemble",
453s         MEMBER["World Geodetic System 1984 (Transit)"],
453s         MEMBER["World Geodetic System 1984 (G730)"],
453s         MEMBER["World Geodetic System 1984 (G873)"],
453s         MEMBER["World Geodetic System 1984 (G1150)"],
453s         MEMBER["World Geodetic System 1984 (G1674)"],
453s         MEMBER["World Geodetic System 1984 (G1762)"],
453s         MEMBER["World Geodetic System 1984 (G2139)"],
453s         ELLIPSOID["WGS 84",6378137,298.257223563,
453s             LENGTHUNIT["metre",1]],
453s         ENSEMBLEACCURACY[2.0]],
453s     PRIMEM["Greenwich",0,
453s         ANGLEUNIT["degree",0.0174532925199433]],
453s     CS[ellipsoidal,2],
453s         AXIS["geodetic latitude (Lat)",north,
453s             ORDER[1],
453s             ANGLEUNIT["degree",0.0174532925199433]],
453s         AXIS["geodetic longitude (Lon)",east,
453s             ORDER[2],
453s             ANGLEUNIT["degree",0.0174532925199433]],
453s     USAGE[
453s         SCOPE["Horizontal component of 3D system."],
453s         AREA["World."],
453s         BBOX[-90,-180,90,180]],
453s     ID["EPSG",4326]]
453s Coordinate Reference System:
453s   No user input
453s   wkt:
453s GEOGCRS["WGS 84",
453s     ENSEMBLE["World Geodetic System 1984 ensemble",
453s         MEMBER["World Geodetic System 1984 (Transit)"],
453s         MEMBER["World Geodetic System 1984 (G730)"],
453s         MEMBER["World Geodetic System 1984 (G873)"],
453s         MEMBER["World Geodetic System 1984 (G1150)"],
453s         MEMBER["World Geodetic System 1984 (G1674)"],
453s         MEMBER["World Geodetic System 1984 (G1762)"],
453s         MEMBER["World Geodetic System 1984 (G2139)"],
453s         ELLIPSOID["WGS 84",6378137,298.257223563,
453s             LENGTHUNIT["metre",1]],
453s         ENSEMBLEACCURACY[2.0]],
453s     PRIMEM["Greenwich",0,
453s         ANGLEUNIT["degree",0.0174532925199433]],
453s     CS[ellipsoidal,2],
453s         AXIS["geodetic latitude (Lat)",north,
453s             ORDER[1],
453s             ANGLEUNIT["degree",0.0174532925199433]],
453s         AXIS["geodetic longitude (Lon)",east,
453s             ORDER[2],
453s             ANGLEUNIT["degree",0.0174532925199433]],
453s     USAGE[
453s         SCOPE["Horizontal component of 3D system."],
453s         AREA["World."],
453s         BBOX[-90,-180,90,180]],
453s     ID["EPSG",4326]]
459s Cannot open layer foo
459s Reading layer `nospatial' from data source 
459s   `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG'
459s Reading layer `nospatial' from data source 
459s   `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG'
459s Reading layer `nc' from data source `/usr/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI Shapefile'
459s Simple feature collection with 100 features and 14 fields
459s Geometry type: MULTIPOLYGON
459s Dimension:     XY
459s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
459s Geodetic CRS:  NAD27
460s OGR: Unsupported geometry type
462s Failed to create feature 1 in x
462s Failed to create feature 1 in x
462s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 716 ]
462s 
462s == Skipped tests (20) ==========================================================
463s * On CRAN (1): 'test-gdal.R:101:5'
463s * RPostgres cannot be loaded (3): 'test-postgis_ODBC.R:1:1',
463s   'test-postgis_RPostgreSQL.R:1:1', 'test-postgis_RPostgres.R:12:1'
463s * Sys.getenv("USER") %in% c("edzer", "travis") is not TRUE (3):
463s   'test-gdal.R:55:3', 'test-write.R:47:3', 'test-write.R:130:3'
463s * empty test (7): 'test-crs.R:66:1', 'test-crs.R:99:1',
463s   'test-normalize.R:29:1', 'test-proj.R:1:1', 'test-read.R:7:1',
463s   'test-s2.R:20:1', 'test-sf.R:52:1'
463s * sf_extSoftVersion()[["GDAL"]] < "2.5.0" && sf_extSoftVersion()[["proj.4"]] <
463s   (1): 'test-crs.R:61:3'
463s * sf_extSoftVersion()[["GDAL"]] >= "2.5.0" is TRUE (1): 'test-gdal.R:46:3'
463s * sf_extSoftVersion()[["proj.4"]] >= "6.0.0" is TRUE (3): 'test-crs.R:44:3',
463s   'test-crs.R:49:3', 'test-crs.R:55:3'
463s * sf_use_s2() is TRUE (1): 'test-geos.R:20:5'
463s 
463s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 716 ]
463s > 
463s BEGIN TEST units.R
463s 
463s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
463s Copyright (C) 2024 The R Foundation for Statistical Computing
463s Platform: powerpc64le-unknown-linux-gnu
463s 
463s R is free software and comes with ABSOLUTELY NO WARRANTY.
463s You are welcome to redistribute it under certain conditions.
463s Type 'license()' or 'licence()' for distribution details.
463s 
463s R is a collaborative project with many contributors.
463s Type 'contributors()' for more information and
463s 'citation()' on how to cite R or R packages in publications.
463s 
463s Type 'demo()' for some demos, 'help()' for on-line help, or
463s 'help.start()' for an HTML browser interface to help.
463s Type 'q()' to quit R.
463s 
463s > suppressPackageStartupMessages(library(sf))
464s > suppressPackageStartupMessages(library(units))
464s > 
464s > if (utils::packageVersion("units") >= "0.5-0")
464s + 	units_options(auto_convert_names_to_symbols = FALSE)
464s > 
464s > st_crs(4326)$ud_unit
464s 1 [degree]
464s > 
464s > u = names(sf:::udunits_from_proj)[1:21]
464s > 
464s > unrecognized = NULL
464s > out = sapply(u, function(x) { 
464s +   p4s = paste0("+proj=laea +units=", x)
464s +   cat(x, ": ")
464s +   ret = try(st_crs(p4s)$ud_unit, silent = TRUE)
464s +   if (! inherits(ret, "try-error"))
464s +   	print(ret)
464s +   else
464s +     unrecognized = c(unrecognized, x)
464s + })
464s km : 1 [km]
464s m : 1 [m]
464s dm : 1 [dm]
464s cm : 1 [cm]
464s mm : 1 [mm]
464s kmi : 1 [nautical_mile]
464s in : 1 [inch]
464s ft : 1 [foot]
464s yd : 1 [yard]
464s mi : 1 [mi]
464s fath : 1 [fathom]
464s ch : 1 [chain]
464s link : 1 [link]
464s us-in : 1 [us_in]
464s us-ft : 1 [US_survey_foot]
464s us-yd : 1 [US_survey_yard]
464s us-ch : 1 [chain]
464s us-mi : 1 [US_survey_mile]
464s ind-yd : 1 [ind_yd]
464s ind-ft : 1 [ind_ft]
464s ind-ch : 1 [ind_ch]
464s > 
464s > if (length(unrecognized))
464s + 	print(paste("unrecognized units:", paste(unrecognized, collapse = ", "), ": older GDAL version?"))
464s > 
464s BEGIN TEST wkb.R
464s 
464s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
464s Copyright (C) 2024 The R Foundation for Statistical Computing
464s Platform: powerpc64le-unknown-linux-gnu
464s 
464s R is free software and comes with ABSOLUTELY NO WARRANTY.
464s You are welcome to redistribute it under certain conditions.
464s Type 'license()' or 'licence()' for distribution details.
464s 
464s R is a collaborative project with many contributors.
464s Type 'contributors()' for more information and
464s 'citation()' on how to cite R or R packages in publications.
464s 
464s Type 'demo()' for some demos, 'help()' for on-line help, or
464s 'help.start()' for an HTML browser interface to help.
464s Type 'q()' to quit R.
464s 
464s > suppressPackageStartupMessages(library(sf))
464s > round_trip = function(x, EWKB = FALSE, pureR = FALSE) {
464s + 	if (inherits(x, "sfg"))
464s + 		x = st_sfc(x)
464s + 	wkb = st_as_binary(x, EWKB = EWKB, pureR = pureR)
464s + 	class(wkb) = "WKB"
464s + 	# print(wkb)
464s + 	y = st_as_sfc(wkb, EWKB = EWKB, pureR = pureR)
464s + 	a = all.equal(x, y)
464s + 	if (length(a) == 1 && is.logical(a) && a)
464s + 		TRUE
464s + 	else {
464s + 		print(x)
464s + 		print(wkb)
464s + 		print(y)
464s + 		FALSE
464s + 	}
464s + }
464s > 
464s > p3 = st_point(c(0,0,0))
464s > p3m = st_point(c(0,0,0), "XYM")
464s > p4 = st_point(c(0,0,0,0))
464s > p2 = st_point(c(0,0))
464s > ls = st_linestring(matrix(1:6,3))
464s > mp = st_multipoint(matrix(1:6,3))
464s > 
464s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
464s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
464s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
464s > pts = list(outer, hole1, hole2)
464s > pl1 = st_polygon(pts)
464s > 
464s > pol1 = list(outer, hole1, hole2)
464s > pol2 = list(outer + 12, hole1 + 12)
464s > pol3 = list(outer + 24)
464s > mp1 = st_multipolygon(list(pol1,pol2,pol3))
464s > 
464s > ml1 = st_multilinestring(list(outer, hole1, hole2))
464s > gc = st_geometrycollection(list(p2, ls, pl1, mp1))
464s > 
464s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE)
464s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
464s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE, pureR = TRUE)
464s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
464s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE)
464s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
464s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE, pureR = TRUE)
464s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
464s > 
464s > rawToHex(st_as_binary(st_multipoint(matrix(1:6,3))))
464s [1] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840"
464s > rawToHex(st_as_binary(st_sfc(st_point(c(0,1)), st_multipoint(matrix(1:6,3)))))
464s [1] "01010000000000000000000000000000000000f03f"                                                                                                      
464s [2] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840"
464s > try(rawToHex("error"))
464s > 
464s > # debug roundtrips sf -> GDAL -> sf; 
464s > # the first WKT is what GDAL reports, and will lack M
464s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYZ")))))
464s LINESTRING (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18)
464s [1] "LINESTRING Z (1 7 13, 2 8 14, 3 9 15, 4 10 16, 5 11 17, 6 12 18)"
464s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYZ")))))
464s MULTIPOINT (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18)
464s [1] "MULTIPOINT Z ((1 7 13), (2 8 14), (3 9 15), (4 10 16), (5 11 17), (6 12 18))"
464s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYZ")))))
464s POINT (0 0 0)
464s Error in rawToHex("error") : 
464s   not implemented for objects of class character
464s [1] "POINT Z (0 0 0)"
464s > 
464s > if (sf:::CPL_gdal_version() >= "2.1.0") { # address GDAL/Fedora (gdal 2.0.2) error:
464s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYM")))))
464s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYM")))))
464s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYM")))))
464s + } else {
464s + 	"(output expected when gdal <= 2.1.0, e.g. CRAN/fedora)"
464s + }
464s LINESTRING (1 7,2 8,3 9,4 10,5 11,6 12)
464s MULTIPOINT (1 7,2 8,3 9,4 10,5 11,6 12)
464s POINT (0 0)
464s [1] "POINT M (0 0 0)"
464s > 
465s autopkgtest [09:34:32]: test run-unit-test: -----------------------]
465s run-unit-test        PASS
465s autopkgtest [09:34:32]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
466s autopkgtest [09:34:33]: test pkg-r-autopkgtest: preparing testbed
648s autopkgtest [09:37:35]: testbed dpkg architecture: ppc64el
648s autopkgtest [09:37:35]: testbed apt version: 2.7.14build2
648s autopkgtest [09:37:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup
650s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
650s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
650s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B]
650s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [57.4 kB]
650s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [507 kB]
650s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [164 kB]
651s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [495 kB]
651s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1968 B]
651s Fetched 1305 kB in 2s (759 kB/s)
651s Reading package lists...
655s Reading package lists...
655s Building dependency tree...
655s Reading state information...
656s Calculating upgrade...
656s The following package was automatically installed and is no longer required:
656s   libatm1t64
656s Use 'sudo apt autoremove' to remove it.
656s The following packages will be upgraded:
656s   apparmor apport apport-core-dump-handler apt apt-utils bash-completion bc
656s   curl dhcpcd-base dpkg dpkg-dev dracut-install eatmydata fwupd gcc-14-base
656s   gir1.2-girepository-2.0 gir1.2-glib-2.0 groff-base initramfs-tools
656s   initramfs-tools-bin initramfs-tools-core iproute2 klibc-utils less libacl1
656s   libapparmor1 libapt-pkg6.0t64 libbpf1 libbsd0 libc-bin libc-dev-bin
656s   libc-devtools libc6 libc6-dev libcap-ng0 libclang-cpp18 libclang1-18
656s   libcurl3t64-gnutls libcurl4t64 libdpkg-perl libdw1t64 libeatmydata1
656s   libelf1t64 libevent-core-2.1-7t64 libexpat1 libfwupd2 libgcc-s1 libgcrypt20
656s   libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libgnutls30t64
656s   libgpg-error-l10n libgpg-error0 libklibc libllvm18 liblocale-gettext-perl
656s   liblz4-1 libnss3 libnvme1t64 libpam-modules libpam-modules-bin
656s   libpam-runtime libpam0g libperl5.38t64 libsharpyuv0 libslang2 libsqlite3-0
656s   libstdc++6 libtirpc-common libtirpc3t64 libuv1t64 libwebp7 libxcb1 locales
656s   man-db pastebinit perl perl-base perl-modules-5.38 python-apt-common
656s   python-babel-localedata python3-apport python3-apt python3-babel
656s   python3-blinker python3-httplib2 python3-jinja2 python3-netaddr
656s   python3-problem-report python3-pyparsing python3-six
656s   python3-typing-extensions rsync tzdata ubuntu-pro-client
656s   ubuntu-pro-client-l10n vim-common vim-tiny xxd
656s 100 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
656s Need to get 110 MB of archives.
656s After this operation, 3828 kB disk space will be freed.
656s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-devtools ppc64el 2.39-0ubuntu8.1 [29.6 kB]
656s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc6-dev ppc64el 2.39-0ubuntu8.1 [2104 kB]
659s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu8.1 [21.3 kB]
659s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-14-base ppc64el 14.1.0-1ubuntu1 [48.4 kB]
659s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcc-s1 ppc64el 14.1.0-1ubuntu1 [39.2 kB]
659s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libstdc++6 ppc64el 14.1.0-1ubuntu1 [893 kB]
660s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc6 ppc64el 2.39-0ubuntu8.1 [3275 kB]
662s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgpg-error-l10n all 1.49-2 [8228 B]
662s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgpg-error0 ppc64el 1.49-2 [89.2 kB]
662s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcrypt20 ppc64el 1.10.3-3 [742 kB]
663s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblz4-1 ppc64el 1.9.4-2 [105 kB]
663s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapt-pkg6.0t64 ppc64el 2.9.3 [1091 kB]
664s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el dpkg ppc64el 1.22.6ubuntu10 [1339 kB]
664s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libperl5.38t64 ppc64el 5.38.2-4 [4938 kB]
667s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl ppc64el 5.38.2-4 [231 kB]
667s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-base ppc64el 5.38.2-4 [1906 kB]
668s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-modules-5.38 all 5.38.2-4 [3110 kB]
669s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libc-bin ppc64el 2.39-0ubuntu8.1 [751 kB]
669s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el apt ppc64el 2.9.3 [1429 kB]
669s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el apt-utils ppc64el 2.9.3 [231 kB]
669s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgnutls30t64 ppc64el 3.8.5-2ubuntu1 [1060 kB]
669s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam0g ppc64el 1.5.3-7ubuntu1 [75.7 kB]
669s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-modules-bin ppc64el 1.5.3-7ubuntu1 [57.8 kB]
669s Get:24 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-modules ppc64el 1.5.3-7ubuntu1 [325 kB]
669s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblocale-gettext-perl ppc64el 1.07-7 [15.8 kB]
669s Get:26 http://ftpmaster.internal/ubuntu oracular/main ppc64el libacl1 ppc64el 2.3.2-2 [21.1 kB]
669s Get:27 http://ftpmaster.internal/ubuntu oracular/main ppc64el rsync ppc64el 3.3.0-1 [485 kB]
669s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el python-apt-common all 2.9.0 [20.1 kB]
669s Get:29 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-apt ppc64el 2.9.0 [180 kB]
670s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pyparsing all 3.1.2-1 [86.4 kB]
670s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-httplib2 all 0.22.0-1 [30.4 kB]
670s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-problem-report all 2.28.1-0ubuntu4 [23.9 kB]
670s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-apport all 2.28.1-0ubuntu4 [92.1 kB]
670s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-girepository-2.0 ppc64el 1.80.1-3 [24.6 kB]
670s Get:35 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-glib-2.0 ppc64el 2.80.2-1ubuntu1 [182 kB]
670s Get:36 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-0t64 ppc64el 2.80.2-1ubuntu1 [1765 kB]
670s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgirepository-1.0-1 ppc64el 1.80.1-3 [94.2 kB]
670s Get:38 http://ftpmaster.internal/ubuntu oracular/main ppc64el apport-core-dump-handler all 2.28.1-0ubuntu4 [16.9 kB]
670s Get:39 http://ftpmaster.internal/ubuntu oracular/main ppc64el apport all 2.28.1-0ubuntu4 [83.4 kB]
670s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcap-ng0 ppc64el 0.8.5-1 [16.0 kB]
670s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpam-runtime all 1.5.3-7ubuntu1 [40.8 kB]
670s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el dhcpcd-base ppc64el 1:10.0.6-5 [273 kB]
670s Get:43 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdw1t64 ppc64el 0.191-1 [303 kB]
670s Get:44 http://ftpmaster.internal/ubuntu oracular/main ppc64el libelf1t64 ppc64el 0.191-1 [68.0 kB]
670s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbpf1 ppc64el 1:1.4.1-1 [220 kB]
670s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtirpc-common all 1.3.4+ds-1.3 [8106 B]
670s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.3 [101 kB]
670s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el iproute2 ppc64el 6.9.0-1 [1399 kB]
670s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el less ppc64el 590-2ubuntu2.1 [170 kB]
670s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapparmor1 ppc64el 4.0.1-0ubuntu1 [55.1 kB]
670s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbsd0 ppc64el 0.12.2-1 [56.3 kB]
670s Get:52 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexpat1 ppc64el 2.6.2-1 [98.5 kB]
670s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-data all 2.80.2-1ubuntu1 [49.3 kB]
670s Get:54 http://ftpmaster.internal/ubuntu oracular/main ppc64el libslang2 ppc64el 2.3.3-5 [503 kB]
671s Get:55 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsqlite3-0 ppc64el 3.45.3-1 [803 kB]
671s Get:56 http://ftpmaster.internal/ubuntu oracular/main ppc64el locales all 2.39-0ubuntu8.1 [4234 kB]
671s Get:57 http://ftpmaster.internal/ubuntu oracular/main ppc64el tzdata all 2024a-4ubuntu1 [274 kB]
671s Get:58 http://ftpmaster.internal/ubuntu oracular/main ppc64el ubuntu-pro-client-l10n ppc64el 32.1 [19.4 kB]
671s Get:59 http://ftpmaster.internal/ubuntu oracular/main ppc64el ubuntu-pro-client ppc64el 32.1 [229 kB]
671s Get:60 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-tiny ppc64el 2:9.1.0377-1ubuntu1 [1043 kB]
671s Get:61 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-common all 2:9.1.0377-1ubuntu1 [385 kB]
672s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el xxd ppc64el 2:9.1.0377-1ubuntu1 [64.0 kB]
672s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el apparmor ppc64el 4.0.1-0ubuntu1 [748 kB]
672s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el bash-completion all 1:2.14.0-1 [206 kB]
672s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el groff-base ppc64el 1.23.0-4 [1106 kB]
672s Get:66 http://ftpmaster.internal/ubuntu oracular/main ppc64el libuv1t64 ppc64el 1.48.0-4 [115 kB]
672s Get:67 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb1 ppc64el 1.17.0-2 [57.0 kB]
672s Get:68 http://ftpmaster.internal/ubuntu oracular/main ppc64el man-db ppc64el 2.12.1-1 [1278 kB]
672s Get:69 http://ftpmaster.internal/ubuntu oracular/main ppc64el bc ppc64el 1.07.1-4 [93.3 kB]
672s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el curl ppc64el 8.5.0-2ubuntu10.1 [234 kB]
672s Get:71 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu10.1 [428 kB]
672s Get:72 http://ftpmaster.internal/ubuntu oracular/main ppc64el dpkg-dev all 1.22.6ubuntu10 [1074 kB]
672s Get:73 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdpkg-perl all 1.22.6ubuntu10 [269 kB]
672s Get:74 http://ftpmaster.internal/ubuntu oracular/main ppc64el dracut-install ppc64el 060+5-8ubuntu1 [35.2 kB]
672s Get:75 http://ftpmaster.internal/ubuntu oracular/main ppc64el libeatmydata1 ppc64el 131-2 [7522 B]
672s Get:76 http://ftpmaster.internal/ubuntu oracular/main ppc64el eatmydata all 131-2 [5576 B]
672s Get:77 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu10.1 [420 kB]
672s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfwupd2 ppc64el 1.9.20-1 [137 kB]
672s Get:79 http://ftpmaster.internal/ubuntu oracular/main ppc64el fwupd ppc64el 1.9.20-1 [4641 kB]
673s Get:80 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools all 0.142ubuntu27 [7898 B]
673s Get:81 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools-core all 0.142ubuntu27 [49.5 kB]
673s Get:82 http://ftpmaster.internal/ubuntu oracular/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu27 [21.6 kB]
673s Get:83 http://ftpmaster.internal/ubuntu oracular/main ppc64el klibc-utils ppc64el 2.0.13-4ubuntu1 [120 kB]
673s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el libklibc ppc64el 2.0.13-4ubuntu1 [54.2 kB]
673s Get:85 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclang-cpp18 ppc64el 1:18.1.6-1 [14.4 MB]
674s Get:86 http://ftpmaster.internal/ubuntu oracular/main ppc64el libllvm18 ppc64el 1:18.1.6-1 [28.7 MB]
676s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclang1-18 ppc64el 1:18.1.6-1 [8673 kB]
676s Get:88 http://ftpmaster.internal/ubuntu oracular/main ppc64el libevent-core-2.1-7t64 ppc64el 2.1.12-stable-10 [108 kB]
677s Get:89 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnss3 ppc64el 2:3.100-1 [1848 kB]
677s Get:90 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnvme1t64 ppc64el 1.9-1 [100 kB]
677s Get:91 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsharpyuv0 ppc64el 1.4.0-0.1 [22.0 kB]
677s Get:92 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebp7 ppc64el 1.4.0-0.1 [309 kB]
677s Get:93 http://ftpmaster.internal/ubuntu oracular/main ppc64el pastebinit all 1.7.0-1 [14.9 kB]
677s Get:94 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-babel all 2.14.0-1 [96.4 kB]
677s Get:95 http://ftpmaster.internal/ubuntu oracular/main ppc64el python-babel-localedata all 2.14.0-1 [6385 kB]
677s Get:96 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-blinker all 1.8.2-1 [11.4 kB]
677s Get:97 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-jinja2 all 3.1.3-1 [107 kB]
677s Get:98 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-netaddr all 0.10.1-1 [322 kB]
677s Get:99 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-six all 1.16.0-6 [13.0 kB]
677s Get:100 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-typing-extensions all 4.11.0-1 [61.5 kB]
679s Preconfiguring packages ...
679s Fetched 110 MB in 21s (5177 kB/s)
679s (Reading database ... 
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(Reading database ... 72144 files and directories currently installed.)
679s Preparing to unpack .../libc-devtools_2.39-0ubuntu8.1_ppc64el.deb ...
679s Unpacking libc-devtools (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
679s Preparing to unpack .../libc6-dev_2.39-0ubuntu8.1_ppc64el.deb ...
679s Unpacking libc6-dev:ppc64el (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
680s Preparing to unpack .../libc-dev-bin_2.39-0ubuntu8.1_ppc64el.deb ...
680s Unpacking libc-dev-bin (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
680s Preparing to unpack .../gcc-14-base_14.1.0-1ubuntu1_ppc64el.deb ...
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700s dpkg: warning: unable to delete old directory '/etc/iproute2/rt_tables.d': Directory not empty
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703s Preparing to unpack .../21-apparmor_4.0.1-0ubuntu1_ppc64el.deb ...
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704s Preparing to unpack .../22-bash-completion_1%3a2.14.0-1_all.deb ...
704s Unpacking bash-completion (1:2.14.0-1) over (1:2.11-8) ...
705s Preparing to unpack .../23-groff-base_1.23.0-4_ppc64el.deb ...
705s Unpacking groff-base (1.23.0-4) over (1.23.0-3build2) ...
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705s Preparing to unpack .../25-libxcb1_1.17.0-2_ppc64el.deb ...
705s Unpacking libxcb1:ppc64el (1.17.0-2) over (1.15-1ubuntu2) ...
705s Preparing to unpack .../26-man-db_2.12.1-1_ppc64el.deb ...
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706s Preparing to unpack .../28-curl_8.5.0-2ubuntu10.1_ppc64el.deb ...
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706s Preparing to unpack .../29-libcurl4t64_8.5.0-2ubuntu10.1_ppc64el.deb ...
706s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu10.1) over (8.5.0-2ubuntu10) ...
706s Preparing to unpack .../30-dpkg-dev_1.22.6ubuntu10_all.deb ...
706s Unpacking dpkg-dev (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
706s Preparing to unpack .../31-libdpkg-perl_1.22.6ubuntu10_all.deb ...
706s Unpacking libdpkg-perl (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
706s Preparing to unpack .../32-dracut-install_060+5-8ubuntu1_ppc64el.deb ...
706s Unpacking dracut-install (060+5-8ubuntu1) over (060+5-1ubuntu3) ...
706s Preparing to unpack .../33-libeatmydata1_131-2_ppc64el.deb ...
706s Unpacking libeatmydata1:ppc64el (131-2) over (131-1ubuntu1) ...
706s Preparing to unpack .../34-eatmydata_131-2_all.deb ...
706s Unpacking eatmydata (131-2) over (131-1ubuntu1) ...
707s Preparing to unpack .../35-libcurl3t64-gnutls_8.5.0-2ubuntu10.1_ppc64el.deb ...
707s Unpacking libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu10.1) over (8.5.0-2ubuntu10) ...
707s Preparing to unpack .../36-libfwupd2_1.9.20-1_ppc64el.deb ...
707s Unpacking libfwupd2:ppc64el (1.9.20-1) over (1.9.16-1) ...
707s Preparing to unpack .../37-fwupd_1.9.20-1_ppc64el.deb ...
707s Unpacking fwupd (1.9.20-1) over (1.9.16-1) ...
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707s Unpacking initramfs-tools (0.142ubuntu27) over (0.142ubuntu25) ...
707s Preparing to unpack .../39-initramfs-tools-core_0.142ubuntu27_all.deb ...
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707s Preparing to unpack .../40-initramfs-tools-bin_0.142ubuntu27_ppc64el.deb ...
707s Unpacking initramfs-tools-bin (0.142ubuntu27) over (0.142ubuntu25) ...
707s Preparing to unpack .../41-klibc-utils_2.0.13-4ubuntu1_ppc64el.deb ...
707s Unpacking klibc-utils (2.0.13-4ubuntu1) over (2.0.13-4) ...
708s Preparing to unpack .../42-libklibc_2.0.13-4ubuntu1_ppc64el.deb ...
708s Unpacking libklibc:ppc64el (2.0.13-4ubuntu1) over (2.0.13-4) ...
708s Preparing to unpack .../43-libclang-cpp18_1%3a18.1.6-1_ppc64el.deb ...
708s Unpacking libclang-cpp18 (1:18.1.6-1) over (1:18.1.3-1) ...
709s Preparing to unpack .../44-libllvm18_1%3a18.1.6-1_ppc64el.deb ...
709s Unpacking libllvm18:ppc64el (1:18.1.6-1) over (1:18.1.3-1) ...
711s Preparing to unpack .../45-libclang1-18_1%3a18.1.6-1_ppc64el.deb ...
711s Unpacking libclang1-18 (1:18.1.6-1) over (1:18.1.3-1) ...
712s Preparing to unpack .../46-libevent-core-2.1-7t64_2.1.12-stable-10_ppc64el.deb ...
712s Unpacking libevent-core-2.1-7t64:ppc64el (2.1.12-stable-10) over (2.1.12-stable-9ubuntu2) ...
712s Preparing to unpack .../47-libnss3_2%3a3.100-1_ppc64el.deb ...
712s Unpacking libnss3:ppc64el (2:3.100-1) over (2:3.98-1build1) ...
712s Preparing to unpack .../48-libnvme1t64_1.9-1_ppc64el.deb ...
712s Unpacking libnvme1t64 (1.9-1) over (1.8-3build1) ...
712s Preparing to unpack .../49-libsharpyuv0_1.4.0-0.1_ppc64el.deb ...
712s Unpacking libsharpyuv0:ppc64el (1.4.0-0.1) over (1.3.2-0.4build3) ...
712s Preparing to unpack .../50-libwebp7_1.4.0-0.1_ppc64el.deb ...
712s Unpacking libwebp7:ppc64el (1.4.0-0.1) over (1.3.2-0.4build3) ...
712s Preparing to unpack .../51-pastebinit_1.7.0-1_all.deb ...
712s Unpacking pastebinit (1.7.0-1) over (1.6.2-1) ...
712s Preparing to unpack .../52-python3-babel_2.14.0-1_all.deb ...
712s Unpacking python3-babel (2.14.0-1) over (2.10.3-3build1) ...
713s Preparing to unpack .../53-python-babel-localedata_2.14.0-1_all.deb ...
713s Unpacking python-babel-localedata (2.14.0-1) over (2.10.3-3build1) ...
714s Preparing to unpack .../54-python3-blinker_1.8.2-1_all.deb ...
714s Unpacking python3-blinker (1.8.2-1) over (1.8.1-1) ...
714s Preparing to unpack .../55-python3-jinja2_3.1.3-1_all.deb ...
714s Unpacking python3-jinja2 (3.1.3-1) over (3.1.2-1ubuntu1) ...
714s Preparing to unpack .../56-python3-netaddr_0.10.1-1_all.deb ...
714s Unpacking python3-netaddr (0.10.1-1) over (0.8.0-2ubuntu1) ...
715s Preparing to unpack .../57-python3-six_1.16.0-6_all.deb ...
715s Unpacking python3-six (1.16.0-6) over (1.16.0-4) ...
715s Preparing to unpack .../58-python3-typing-extensions_4.11.0-1_all.deb ...
715s Unpacking python3-typing-extensions (4.11.0-1) over (4.10.0-1) ...
715s Setting up libexpat1:ppc64el (2.6.2-1) ...
715s Setting up libsharpyuv0:ppc64el (1.4.0-0.1) ...
715s Setting up libapparmor1:ppc64el (4.0.1-0ubuntu1) ...
715s Setting up libxcb1:ppc64el (1.17.0-2) ...
715s Setting up apt-utils (2.9.3) ...
715s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu10.1) ...
715s Setting up python3-problem-report (2.28.1-0ubuntu4) ...
715s Setting up libtirpc-common (1.3.4+ds-1.3) ...
715s Setting up libsqlite3-0:ppc64el (3.45.3-1) ...
715s Setting up libuv1t64:ppc64el (1.48.0-4) ...
715s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu10.1) ...
715s Setting up less (590-2ubuntu2.1) ...
715s Setting up bc (1.07.1-4) ...
715s Setting up pastebinit (1.7.0-1) ...
715s Setting up libnss3:ppc64el (2:3.100-1) ...
715s Setting up locales (2.39-0ubuntu8.1) ...
717s Generating locales (this might take a while)...
719s   en_US.UTF-8... done
719s Generation complete.
719s Setting up xxd (2:9.1.0377-1ubuntu1) ...
719s Setting up libelf1t64:ppc64el (0.191-1) ...
719s Setting up python-babel-localedata (2.14.0-1) ...
719s Setting up libdw1t64:ppc64el (0.191-1) ...
719s Setting up tzdata (2024a-4ubuntu1) ...
719s 
719s Current default time zone: 'Etc/UTC'
719s Local time is now:      Fri May 24 09:38:46 UTC 2024.
719s Universal Time is now:  Fri May 24 09:38:46 UTC 2024.
719s Run 'dpkg-reconfigure tzdata' if you wish to change it.
719s 
719s Setting up python3-six (1.16.0-6) ...
719s Setting up apparmor (4.0.1-0ubuntu1) ...
719s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
720s Installing new version of config file /etc/apparmor.d/abstractions/samba ...
720s Installing new version of config file /etc/apparmor.d/firefox ...
723s Reloading AppArmor profiles 
725s Setting up libklibc:ppc64el (2.0.13-4ubuntu1) ...
725s Setting up python3-jinja2 (3.1.3-1) ...
725s Setting up libglib2.0-0t64:ppc64el (2.80.2-1ubuntu1) ...
725s No schema files found: doing nothing.
725s Setting up libglib2.0-data (2.80.2-1ubuntu1) ...
725s Setting up vim-common (2:9.1.0377-1ubuntu1) ...
725s Setting up libslang2:ppc64el (2.3.3-5) ...
725s Setting up python3-pyparsing (3.1.2-1) ...
726s Setting up libnvme1t64 (1.9-1) ...
726s Setting up bash-completion (1:2.14.0-1) ...
726s Installing new version of config file /etc/profile.d/bash_completion.sh ...
726s Setting up perl-modules-5.38 (5.38.2-4) ...
726s Setting up dhcpcd-base (1:10.0.6-5) ...
726s Setting up python3-typing-extensions (4.11.0-1) ...
726s Setting up gir1.2-glib-2.0:ppc64el (2.80.2-1ubuntu1) ...
726s Setting up libwebp7:ppc64el (1.4.0-0.1) ...
726s Setting up python3-netaddr (0.10.1-1) ...
726s Setting up python-apt-common (2.9.0) ...
726s Setting up dracut-install (060+5-8ubuntu1) ...
726s Setting up groff-base (1.23.0-4) ...
726s Setting up libeatmydata1:ppc64el (131-2) ...
726s Setting up python3-httplib2 (0.22.0-1) ...
727s Setting up libgirepository-1.0-1:ppc64el (1.80.1-3) ...
727s Setting up libevent-core-2.1-7t64:ppc64el (2.1.12-stable-10) ...
727s Setting up curl (8.5.0-2ubuntu10.1) ...
727s Setting up libperl5.38t64:ppc64el (5.38.2-4) ...
727s Setting up libc-dev-bin (2.39-0ubuntu8.1) ...
727s Setting up klibc-utils (2.0.13-4ubuntu1) ...
727s Setting up libbsd0:ppc64el (0.12.2-1) ...
727s Setting up libgpg-error-l10n (1.49-2) ...
727s Setting up liblocale-gettext-perl (1.07-7) ...
727s Setting up libbpf1:ppc64el (1:1.4.1-1) ...
727s Setting up rsync (3.3.0-1) ...
728s rsync.service is a disabled or a static unit not running, not starting it.
728s Setting up libc-devtools (2.39-0ubuntu8.1) ...
728s Setting up libllvm18:ppc64el (1:18.1.6-1) ...
728s Setting up initramfs-tools-bin (0.142ubuntu27) ...
728s Setting up python3-blinker (1.8.2-1) ...
729s Setting up libclang1-18 (1:18.1.6-1) ...
729s Setting up eatmydata (131-2) ...
729s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.3) ...
729s Setting up python3-babel (2.14.0-1) ...
729s Setting up python3-apt (2.9.0) ...
730s Setting up iproute2 (6.9.0-1) ...
730s Removing obsolete conffile /etc/iproute2/group ...
730s Removing obsolete conffile /etc/iproute2/rt_realms ...
730s Removing obsolete conffile /etc/iproute2/rt_scopes ...
730s Removing obsolete conffile /etc/iproute2/rt_tables ...
730s Removing obsolete conffile /etc/iproute2/rt_tables.d/README ...
730s Removing obsolete conffile /etc/iproute2/rt_protos.d/README ...
730s Removing obsolete conffile /etc/iproute2/rt_protos ...
730s Removing obsolete conffile /etc/iproute2/rt_dsfield ...
730s Removing obsolete conffile /etc/iproute2/nl_protos ...
730s Removing obsolete conffile /etc/iproute2/ematch_map ...
730s Removing obsolete conffile /etc/iproute2/bpf_pinning ...
730s Setting up libfwupd2:ppc64el (1.9.20-1) ...
730s Setting up vim-tiny (2:9.1.0377-1ubuntu1) ...
730s Setting up man-db (2.12.1-1) ...
730s Updating database of manual pages ...
738s man-db.service is a disabled or a static unit not running, not starting it.
738s Setting up python3-apport (2.28.1-0ubuntu4) ...
738s Setting up perl (5.38.2-4) ...
738s Setting up gir1.2-girepository-2.0:ppc64el (1.80.1-3) ...
738s Setting up libdpkg-perl (1.22.6ubuntu10) ...
738s Setting up libc6-dev:ppc64el (2.39-0ubuntu8.1) ...
738s Setting up initramfs-tools-core (0.142ubuntu27) ...
738s Setting up libclang-cpp18 (1:18.1.6-1) ...
738s Setting up ubuntu-pro-client (32.1) ...
738s Installing new version of config file /etc/apparmor.d/ubuntu_pro_apt_news ...
742s Setting up fwupd (1.9.20-1) ...
743s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
743s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
743s fwupd.service is a disabled or a static unit not running, not starting it.
743s Setting up ubuntu-pro-client-l10n (32.1) ...
743s Setting up initramfs-tools (0.142ubuntu27) ...
743s update-initramfs: deferring update (trigger activated)
743s Setting up dpkg-dev (1.22.6ubuntu10) ...
743s Setting up apport-core-dump-handler (2.28.1-0ubuntu4) ...
747s Setting up apport (2.28.1-0ubuntu4) ...
747s Installing new version of config file /etc/apport/crashdb.conf ...
748s apport-autoreport.service is a disabled or a static unit not running, not starting it.
748s Processing triggers for dbus (1.14.10-4ubuntu4) ...
748s Processing triggers for install-info (7.1-3build2) ...
749s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
749s Processing triggers for initramfs-tools (0.142ubuntu27) ...
749s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic
749s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
771s Reading package lists...
771s Building dependency tree...
771s Reading state information...
772s The following packages will be REMOVED:
772s   libatm1t64*
772s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
772s After this operation, 136 kB disk space will be freed.
772s (Reading database ... 
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(Reading database ... 72612 files and directories currently installed.)
772s Removing libatm1t64:ppc64el (1:2.5.1-5.1build1) ...
772s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
774s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
774s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
774s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
774s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
777s Reading package lists...
777s Reading package lists...
777s Building dependency tree...
777s Reading state information...
777s Calculating upgrade...
778s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
778s Reading package lists...
778s Building dependency tree...
778s Reading state information...
779s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
779s autopkgtest [09:39:46]: rebooting testbed after setup commands that affected boot
784s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
819s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
852s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
865s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
878s Reading package lists...
879s Building dependency tree...
879s Reading state information...
880s Starting pkgProblemResolver with broken count: 0
880s Starting 2 pkgProblemResolver with broken count: 0
880s Done
880s The following additional packages will be installed:
880s   build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
880s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fonts-font-awesome
880s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13
880s   g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13
880s   gcc-13-base gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gdal-data
880s   gdal-plugins gfortran gfortran-13 gfortran-13-powerpc64le-linux-gnu
880s   gfortran-powerpc64le-linux-gnu icu-devtools javascript-common libaec0
880s   libarmadillo12 libarpack2t64 libasan8 libatomic1 libblas-dev libblas3
880s   libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1
880s   libdeflate-dev libfreexl1 libfyba0t64 libgcc-13-dev libgdal34t64
880s   libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5
880s   libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64
880s   libhdf5-hl-100t64 libice6 libicu-dev libisl23 libitm1 libjpeg-dev
880s   libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
880s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
880s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
880s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
880s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64
880s   libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblsan0
880s   libltdl7 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21 libncurses-dev
880s   libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0
880s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
880s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
880s   libpng-dev libpoppler134 libpq5 libproj25 libqhull-r8.0 libquadmath0
880s   libreadline-dev librttopo1 libsm6 libsnappy1v5 libspatialite8t64
880s   libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0
880s   libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data
880s   liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2
880s   libxrender1 libxss1 libxt6t64 littler mysql-common node-bootstrap-sass
880s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest
880s   pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-abind
880s   r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob
880s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class
880s   r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr
880s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc
880s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate
880s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs
880s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable
880s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband
880s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr
880s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
880s   r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass
880s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
880s   r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgbuild
880s   r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr
880s   r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy
880s   r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster
880s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang
880s   r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot
880s   r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny
880s   r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data
880s   r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet
880s   r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse
880s   r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr
880s   r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat
880s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units
880s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
880s   r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip
880s   x11-common xdg-utils zip zlib1g-dev
880s Suggested packages:
880s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
880s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
880s   gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
880s   apache2 | lighttpd | httpd liblapack-doc geotiff-bin gdal-bin
880s   libgeotiff-epsg libhdf4-alt-dev hdf4-tools icu-doc libjs-jquery-ui-docs
880s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc
880s   ncurses-doc odbc-postgresql tdsodbc ogdi-bin proj-bin readline-doc
880s   libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex
880s   texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf
880s   librsvg2-bin groff ghc php python ruby libjs-katex
880s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
880s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
880s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo
880s   r-cran-roxygen2 r-cran-ff r-cran-kernlab r-cran-mvtnorm r-cran-vcd
880s   r-cran-shinyjs r-cran-png r-cran-jpeg r-cran-viridis r-cran-rstudioapi
880s   r-cran-rmysql r-cran-magick r-cran-getopt r-cran-mapproj r-cran-mapdata
880s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-vdiffr
880s   r-cran-inline r-cran-hmisc r-cran-rvest r-cran-spelling r-cran-bench
880s   r-cran-here r-cran-hms r-cran-plm r-cran-zoo
880s Recommended packages:
880s   bzip2-doc proj-bin node-jquery libpng-tools poppler-data r-recommended
880s   r-doc-html r-cran-future r-cran-thematic r-cran-mockery r-cran-spelling
880s   r-cran-spdata r-cran-tinytest r-cran-htmlwidgets r-cran-rstudioapi
880s   r-cran-whoami r-cran-xml2 r-cran-dt r-cran-bench r-cran-decor r-cran-lobstr
880s   r-cran-progress r-cran-webutils r-cran-gh r-cran-broom r-cran-dbplyr
880s   r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-hexbin r-cran-hmisc
880s   r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg
880s   r-cran-svglite r-cran-vdiffr r-cran-markdown r-cran-testit r-cran-cairo
880s   r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp r-cran-codetools
880s   r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl
880s   r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr
880s   r-cran-tidyverse r-cran-geosphere r-cran-sodium r-cran-future.apply
880s   r-cran-lubridate r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes
880s   r-cran-webfakes r-cran-cba r-cran-pingr r-cran-ncdf4 r-cran-igraph
880s   r-cran-gstat r-cran-fields r-cran-exactextractr r-cran-usethis
880s   r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert
880s   r-cran-hms r-cran-rvest r-cran-dichromat r-cran-nanoarrow r-cran-sm
880s   r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv r-cran-glmnet
880s   r-cran-pcict r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-fnn
880s   r-cran-ggforce r-cran-ggthemes r-cran-mapdata r-cran-ncdfgeom r-cran-ncmeta
880s   r-cran-plm r-cran-randomforest r-cran-spacetime r-cran-viridis r-cran-xts
880s   r-cran-zoo r-cran-xml r-cran-data.table r-cran-formattable r-cran-pkgdown
880s   r-cran-zeallot r-cran-renv r-cran-runit libfile-mimeinfo-perl
880s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
881s The following NEW packages will be installed:
881s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
881s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fonts-font-awesome
881s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13
881s   g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13
881s   gcc-13-base gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gdal-data
881s   gdal-plugins gfortran gfortran-13 gfortran-13-powerpc64le-linux-gnu
881s   gfortran-powerpc64le-linux-gnu icu-devtools javascript-common libaec0
881s   libarmadillo12 libarpack2t64 libasan8 libatomic1 libblas-dev libblas3
881s   libblosc1 libbz2-dev libcairo2 libcc1-0 libcfitsio10t64 libdatrie1
881s   libdeflate-dev libfreexl1 libfyba0t64 libgcc-13-dev libgdal34t64
881s   libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev libgfortran5
881s   libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64
881s   libhdf5-hl-100t64 libice6 libicu-dev libisl23 libitm1 libjpeg-dev
881s   libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
881s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
881s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
881s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
881s   libjs-sifter.js libjs-twitter-bootstrap-datepicker libkmlbase1t64
881s   libkmldom1t64 libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblsan0
881s   libltdl7 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21 libncurses-dev
881s   libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0
881s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
881s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
881s   libpng-dev libpoppler134 libpq5 libproj25 libqhull-r8.0 libquadmath0
881s   libreadline-dev librttopo1 libsm6 libsnappy1v5 libspatialite8t64
881s   libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0
881s   libtirpc-dev libtk8.6 libtsan2 libubsan1 libudunits2-0 libudunits2-data
881s   liburiparser1 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2
881s   libxrender1 libxss1 libxt6t64 littler mysql-common node-bootstrap-sass
881s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest
881s   pkgconf pkgconf-bin proj-data r-base-core r-base-dev r-cran-abind
881s   r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob
881s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class
881s   r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr
881s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc
881s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate
881s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs
881s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable
881s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband
881s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr
881s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
881s   r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass
881s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
881s   r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar r-cran-pkgbuild
881s   r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr
881s   r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises r-cran-proxy
881s   r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster
881s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang
881s   r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot
881s   r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny
881s   r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data
881s   r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet
881s   r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse
881s   r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr
881s   r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat
881s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units
881s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
881s   r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip
881s   x11-common xdg-utils zip zlib1g-dev
881s 0 upgraded, 289 newly installed, 0 to remove and 0 not upgraded.
881s Need to get 315 MB/315 MB of archives.
881s After this operation, 1047 MB of additional disk space will be used.
881s Get:1 /tmp/autopkgtest.fT8P19/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [860 B]
881s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-13-base ppc64el 13.2.0-23ubuntu4 [49.0 kB]
881s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libisl23 ppc64el 0.26-3build1 [886 kB]
881s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libmpc3 ppc64el 1.3.1-1build1 [62.1 kB]
881s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [10.7 MB]
882s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el cpp-13 ppc64el 13.2.0-23ubuntu4 [1038 B]
882s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B]
882s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB]
882s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcc1-0 ppc64el 14.1.0-1ubuntu1 [48.1 kB]
882s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB]
882s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el libitm1 ppc64el 14.1.0-1ubuntu1 [32.4 kB]
882s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libatomic1 ppc64el 14.1.0-1ubuntu1 [10.7 kB]
882s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el libasan8 ppc64el 14.1.0-1ubuntu1 [2971 kB]
882s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblsan0 ppc64el 14.1.0-1ubuntu1 [1328 kB]
882s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtsan2 ppc64el 14.1.0-1ubuntu1 [2708 kB]
883s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libubsan1 ppc64el 14.1.0-1ubuntu1 [1196 kB]
883s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el libquadmath0 ppc64el 14.1.0-1ubuntu1 [158 kB]
883s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcc-13-dev ppc64el 13.2.0-23ubuntu4 [1580 kB]
883s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [20.6 MB]
884s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-13 ppc64el 13.2.0-23ubuntu4 [482 kB]
884s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B]
884s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B]
884s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libstdc++-13-dev ppc64el 13.2.0-23ubuntu4 [2512 kB]
884s Get:24 http://ftpmaster.internal/ubuntu oracular/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [12.2 MB]
885s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el g++-13 ppc64el 13.2.0-23ubuntu4 [14.5 kB]
885s Get:26 http://ftpmaster.internal/ubuntu oracular/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B]
885s Get:27 http://ftpmaster.internal/ubuntu oracular/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B]
885s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
885s Get:29 http://ftpmaster.internal/ubuntu oracular/main ppc64el dctrl-tools ppc64el 2.24-3build3 [109 kB]
885s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB]
885s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
885s Get:32 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
885s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
885s Get:34 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gdal-data all 3.8.5+dfsg-1 [261 kB]
885s Get:35 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gdal-plugins ppc64el 3.8.5+dfsg-1 [24.6 kB]
885s Get:36 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB]
885s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran-13-dev ppc64el 13.2.0-23ubuntu4 [604 kB]
885s Get:38 http://ftpmaster.internal/ubuntu oracular/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [11.2 MB]
886s Get:39 http://ftpmaster.internal/ubuntu oracular/main ppc64el gfortran-13 ppc64el 13.2.0-23ubuntu4 [11.7 kB]
886s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B]
886s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B]
886s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el icu-devtools ppc64el 74.2-1ubuntu3 [247 kB]
886s Get:43 http://ftpmaster.internal/ubuntu oracular/main ppc64el javascript-common all 11+nmu1 [5936 B]
886s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB]
886s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB]
886s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB]
886s Get:47 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libarpack2t64 ppc64el 3.9.1-1.1build2 [107 kB]
886s Get:48 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsuperlu6 ppc64el 6.0.1+dfsg1-1build1 [238 kB]
886s Get:49 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libarmadillo12 ppc64el 1:12.8.2+dfsg-1 [110 kB]
886s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas-dev ppc64el 3.12.0-3build1 [301 kB]
886s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsnappy1v5 ppc64el 1.2.1-1 [33.4 kB]
886s Get:52 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libblosc1 ppc64el 1.21.5+ds-1build1 [38.5 kB]
886s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbz2-dev ppc64el 1.0.8-5.1 [51.2 kB]
886s Get:54 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB]
886s Get:55 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB]
886s Get:56 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B]
886s Get:57 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
886s Get:58 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB]
887s Get:59 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libcfitsio10t64 ppc64el 4.3.1-1.1build2 [713 kB]
887s Get:60 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
887s Get:61 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdeflate-dev ppc64el 1.20-1 [69.3 kB]
887s Get:62 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libfyba0t64 ppc64el 4.1.1-11build1 [148 kB]
887s Get:63 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libminizip1t64 ppc64el 1:1.3.dfsg-3.1ubuntu2 [25.5 kB]
887s Get:64 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libfreexl1 ppc64el 2.0.0-1build2 [53.1 kB]
887s Get:65 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeos3.12.1t64 ppc64el 3.12.1-3build1 [1010 kB]
887s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeos-c1t64 ppc64el 3.12.1-3build1 [107 kB]
887s Get:67 http://ftpmaster.internal/ubuntu oracular/universe ppc64el proj-data all 9.4.0-1build2 [7885 kB]
887s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libproj25 ppc64el 9.4.0-1build2 [1485 kB]
887s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgeotiff5 ppc64el 1.7.1-5build1 [65.5 kB]
887s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgif7 ppc64el 5.2.2-1ubuntu1 [41.2 kB]
887s Get:71 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B]
887s Get:72 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf4-0-alt ppc64el 4.3.0-1 [337 kB]
887s Get:73 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu4 [1395 kB]
887s Get:74 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liburiparser1 ppc64el 0.9.7+dfsg-2build1 [53.6 kB]
887s Get:75 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmlbase1t64 ppc64el 1.3.0-12build1 [59.5 kB]
887s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmldom1t64 ppc64el 1.3.0-12build1 [168 kB]
887s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libkmlengine1t64 ppc64el 1.3.0-12build1 [78.0 kB]
887s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el mysql-common all 5.8+1.1.0build1 [6746 B]
887s Get:79 http://ftpmaster.internal/ubuntu oracular/main ppc64el libmysqlclient21 ppc64el 8.0.37-1 [1296 kB]
887s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu4 [70.9 kB]
887s Get:81 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-5ubuntu4 [601 kB]
888s Get:82 http://ftpmaster.internal/ubuntu oracular/main ppc64el libltdl7 ppc64el 2.4.7-7build1 [48.2 kB]
888s Get:83 http://ftpmaster.internal/ubuntu oracular/main ppc64el libodbc2 ppc64el 2.3.12-1build2 [188 kB]
888s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el unixodbc-common all 2.3.12-1build2 [8646 B]
888s Get:85 http://ftpmaster.internal/ubuntu oracular/main ppc64el libodbcinst2 ppc64el 2.3.12-1build2 [37.2 kB]
888s Get:86 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libogdi4.1 ppc64el 4.1.1+ds-4 [256 kB]
888s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB]
888s Get:88 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB]
888s Get:89 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpoppler134 ppc64el 24.02.0-1ubuntu9 [1341 kB]
888s Get:90 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpq5 ppc64el 16.2-1ubuntu4 [170 kB]
888s Get:91 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB]
888s Get:92 http://ftpmaster.internal/ubuntu oracular/universe ppc64el librttopo1 ppc64el 1.1.0-3build2 [240 kB]
888s Get:93 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libspatialite8t64 ppc64el 5.1.0-3build1 [2233 kB]
888s Get:94 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libxerces-c3.2t64 ppc64el 3.2.4+debian-1.3 [1060 kB]
888s Get:95 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgdal34t64 ppc64el 3.8.5+dfsg-1 [9740 kB]
889s Get:96 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB]
889s Get:97 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB]
889s Get:98 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
889s Get:99 http://ftpmaster.internal/ubuntu oracular/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB]
889s Get:100 http://ftpmaster.internal/ubuntu oracular/main ppc64el libicu-dev ppc64el 74.2-1ubuntu3 [12.5 MB]
889s Get:101 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu2 [364 kB]
889s Get:102 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
890s Get:103 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
890s Get:104 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
890s Get:105 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
890s Get:106 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
890s Get:107 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB]
890s Get:108 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB]
890s Get:109 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
890s Get:110 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
890s Get:111 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
890s Get:112 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
890s Get:113 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
890s Get:114 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
890s Get:115 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
890s Get:116 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
890s Get:117 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
890s Get:118 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack-dev ppc64el 3.12.0-3build1 [6100 kB]
891s Get:119 http://ftpmaster.internal/ubuntu oracular/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu2 [485 kB]
891s Get:120 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
891s Get:121 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
891s Get:122 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpango-1.0-0 ppc64el 1.52.2+ds-1 [273 kB]
891s Get:123 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.2+ds-1 [49.8 kB]
891s Get:124 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.2+ds-1 [30.5 kB]
891s Get:125 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB]
891s Get:126 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B]
891s Get:127 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu2 [247 kB]
891s Get:128 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu2 [230 kB]
891s Get:129 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu2 [7068 B]
891s Get:130 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu2 [801 kB]
891s Get:131 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpkgconf3 ppc64el 1.8.1-2build1 [37.4 kB]
891s Get:132 http://ftpmaster.internal/ubuntu oracular/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu2 [902 kB]
891s Get:133 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpng-dev ppc64el 1.6.43-5build1 [328 kB]
891s Get:134 http://ftpmaster.internal/ubuntu oracular/main ppc64el libreadline-dev ppc64el 8.2-4build1 [230 kB]
891s Get:135 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB]
891s Get:136 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB]
892s Get:137 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
892s Get:138 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
892s Get:139 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB]
892s Get:140 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libudunits2-data all 2.2.28-7build1 [19.4 kB]
892s Get:141 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libudunits2-0 ppc64el 2.2.28-7build1 [67.5 kB]
892s Get:142 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
892s Get:143 http://ftpmaster.internal/ubuntu oracular/main ppc64el zip ppc64el 3.0-13build1 [198 kB]
892s Get:144 http://ftpmaster.internal/ubuntu oracular/main ppc64el unzip ppc64el 6.0-28ubuntu4 [192 kB]
892s Get:145 http://ftpmaster.internal/ubuntu oracular/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
892s Get:146 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-base-core ppc64el 4.4.0-2 [28.9 MB]
895s Get:147 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-littler ppc64el 0.3.20-1 [97.4 kB]
895s Get:148 http://ftpmaster.internal/ubuntu oracular/universe ppc64el littler all 0.3.20-1 [2486 B]
895s Get:149 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB]
895s Get:150 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
895s Get:151 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB]
895s Get:152 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc-data all 3.1.3-2build2 [78.3 kB]
895s Get:153 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc ppc64el 3.1.3+ds-3build1 [22.5 MB]
897s Get:154 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblzma-dev ppc64el 5.6.1+really5.4.5-1 [207 kB]
897s Get:155 http://ftpmaster.internal/ubuntu oracular/main ppc64el pkgconf-bin ppc64el 1.8.1-2build1 [22.3 kB]
897s Get:156 http://ftpmaster.internal/ubuntu oracular/main ppc64el pkgconf ppc64el 1.8.1-2build1 [16.8 kB]
897s Get:157 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1.3 [223 kB]
897s Get:158 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-base-dev all 4.4.0-2 [4340 B]
897s Get:159 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
897s Get:160 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB]
897s Get:161 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB]
897s Get:162 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB]
897s Get:163 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB]
897s Get:164 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB]
898s Get:165 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB]
898s Get:166 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB]
898s Get:167 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB]
898s Get:168 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB]
898s Get:169 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
898s Get:170 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB]
898s Get:171 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB]
898s Get:172 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-brio ppc64el 1.1.5-1 [39.1 kB]
898s Get:173 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB]
898s Get:174 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB]
898s Get:175 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-digest ppc64el 0.6.35-1 [220 kB]
898s Get:176 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltools ppc64el 0.5.8.1-1 [373 kB]
898s Get:177 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
898s Get:178 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB]
898s Get:179 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB]
898s Get:180 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB]
898s Get:181 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1build2 [232 kB]
898s Get:182 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB]
898s Get:183 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB]
898s Get:184 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sass ppc64el 0.4.9+dfsg-1 [1034 kB]
898s Get:185 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
899s Get:186 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-ps ppc64el 1.7.6-1 [317 kB]
899s Get:187 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-processx ppc64el 3.8.3-1 [351 kB]
899s Get:188 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-callr all 3.7.6-1 [458 kB]
899s Get:189 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mass ppc64el 7.3-60.2-1 [1116 kB]
899s Get:190 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-class ppc64el 7.3-22-2build1 [92.5 kB]
899s Get:191 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-proxy ppc64el 0.4-27-1 [185 kB]
899s Get:192 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-e1071 ppc64el 1.7-14-1 [573 kB]
899s Get:193 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-kernsmooth ppc64el 2.23-24-1 [96.3 kB]
899s Get:194 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-classint ppc64el 0.4-10+dfsg-1 [106 kB]
899s Get:195 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-colorspace ppc64el 2.1-0+dfsg-1 [1542 kB]
899s Get:196 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB]
899s Get:197 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lazyeval ppc64el 0.2.2-1build1 [144 kB]
899s Get:198 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rex all 1.2.1-1 [129 kB]
899s Get:199 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-curl ppc64el 5.2.0+dfsg-1build2 [179 kB]
899s Get:200 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2build2 [406 kB]
900s Get:201 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB]
900s Get:202 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB]
900s Get:203 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB]
900s Get:204 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-yaml ppc64el 2.3.8-2 [122 kB]
900s Get:205 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-covr ppc64el 3.6.4+dfsg-1 [302 kB]
900s Get:206 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB]
900s Get:207 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB]
900s Get:208 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-deldir ppc64el 2.0-4-1build1 [273 kB]
900s Get:209 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-desc all 1.4.3-1 [359 kB]
900s Get:210 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-diffobj ppc64el 0.3.5-1 [1118 kB]
900s Get:211 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB]
900s Get:212 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB]
900s Get:213 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB]
900s Get:214 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB]
901s Get:215 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
901s Get:216 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
901s Get:217 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB]
901s Get:218 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyselect ppc64el 1.2.0+dfsg-1 [218 kB]
901s Get:219 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB]
901s Get:220 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-evaluate all 0.23-1 [90.2 kB]
901s Get:221 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-farver ppc64el 2.1.1-2 [1385 kB]
901s Get:222 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB]
901s Get:223 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
901s Get:224 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-isoband ppc64el 0.2.7-1 [1486 kB]
901s Get:225 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB]
901s Get:226 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nlme ppc64el 3.1.164-1build1 [2278 kB]
901s Get:227 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrix ppc64el 1.6-5-1 [4057 kB]
901s Get:228 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mgcv ppc64el 1.9-1-1 [3393 kB]
902s Get:229 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-labeling all 0.4.3-1 [62.1 kB]
902s Get:230 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-munsell all 0.5.0-2build1 [208 kB]
902s Get:231 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
902s Get:232 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB]
902s Get:233 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-scales all 1.3.0-1 [603 kB]
902s Get:234 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
902s Get:235 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-goftest ppc64el 1.2-3-1 [60.2 kB]
902s Get:236 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xfun ppc64el 0.44+dfsg-1 [516 kB]
902s Get:237 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-highr all 0.10+dfsg-2 [38.5 kB]
902s Get:238 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
902s Get:239 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB]
902s Get:240 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB]
902s Get:241 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-promises ppc64el 1.3.0+dfsg-1 [289 kB]
902s Get:242 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httpuv ppc64el 1.6.15+dfsg-1 [521 kB]
902s Get:243 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
902s Get:244 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-knitr all 1.46+dfsg-1 [911 kB]
903s Get:245 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-units ppc64el 0.8-5+dfsg-1 [275 kB]
903s Get:246 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-wk ppc64el 0.9.1-1 [1858 kB]
903s Get:247 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-s2 ppc64el 1.1.6-1build2 [2178 kB]
903s Get:248 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sf ppc64el 1.0-16+dfsg-1 [3064 kB]
903s Get:249 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lwgeom ppc64el 0.2-13-3build2 [477 kB]
903s Get:250 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-maps ppc64el 3.4.2-1 [2366 kB]
903s Get:251 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pbapply all 1.7-2-1 [102 kB]
903s Get:252 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgbuild all 1.4.3-1 [209 kB]
903s Get:253 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rprojroot all 2.0.4-1 [124 kB]
903s Get:254 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgload all 1.3.4-1 [207 kB]
903s Get:255 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB]
903s Get:256 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-polyclip ppc64el 1.10-6-1 [121 kB]
903s Get:257 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-praise all 1.0.0-4build1 [20.3 kB]
903s Get:258 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB]
903s Get:259 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sp ppc64el 1:2.1-2+dfsg-1 [1451 kB]
903s Get:260 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-terra ppc64el 1.7-65-1build2 [3814 kB]
904s Get:261 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-raster ppc64el 3.6-26-1 [3121 kB]
904s Get:262 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
904s Get:263 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB]
904s Get:264 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB]
904s Get:265 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tinytex all 0.49-1 [141 kB]
904s Get:266 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-modernizr all 3.13.0-0.1 [101 kB]
904s Get:267 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB]
904s Get:268 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB]
904s Get:269 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
904s Get:270 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
904s Get:271 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
904s Get:272 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-survival ppc64el 3.5-8-1 [6160 kB]
905s Get:273 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpart ppc64el 4.1.23-1build1 [673 kB]
905s Get:274 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpostgresql ppc64el 0.7-6+dfsg-1 [378 kB]
905s Get:275 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rsqlite ppc64el 2.3.4-1 [1777 kB]
905s Get:276 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.utils ppc64el 3.0-4-1 [362 kB]
905s Get:277 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.data all 3.0-4-1 [4090 kB]
905s Get:278 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.geom ppc64el 3.2-9-1 [3983 kB]
905s Get:279 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.random ppc64el 3.2-3-1 [1174 kB]
905s Get:280 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tensor all 1.5-4 [15.7 kB]
905s Get:281 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.sparse ppc64el 3.0-3-1 [219 kB]
906s Get:282 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.explore ppc64el 3.2-5-1 [3294 kB]
906s Get:283 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.model ppc64el 3.2-11-1 [3384 kB]
906s Get:284 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat.linnet ppc64el 3.1-5-1 [1476 kB]
906s Get:285 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-spatstat ppc64el 3.0-7-1 [3817 kB]
906s Get:286 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stars all 0.6-4-1 [4030 kB]
907s Get:287 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-waldo all 0.5.2-1build1 [120 kB]
907s Get:288 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-testthat ppc64el 3.2.1-1 [1693 kB]
907s Get:289 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB]
908s Preconfiguring packages ...
909s Fetched 315 MB in 26s (12.1 MB/s)
909s Selecting previously unselected package gcc-13-base:ppc64el.
909s (Reading database ... 
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(Reading database ... 72606 files and directories currently installed.)
909s Preparing to unpack .../000-gcc-13-base_13.2.0-23ubuntu4_ppc64el.deb ...
909s Unpacking gcc-13-base:ppc64el (13.2.0-23ubuntu4) ...
909s Selecting previously unselected package libisl23:ppc64el.
909s Preparing to unpack .../001-libisl23_0.26-3build1_ppc64el.deb ...
909s Unpacking libisl23:ppc64el (0.26-3build1) ...
909s Selecting previously unselected package libmpc3:ppc64el.
909s Preparing to unpack .../002-libmpc3_1.3.1-1build1_ppc64el.deb ...
909s Unpacking libmpc3:ppc64el (1.3.1-1build1) ...
909s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu.
909s Preparing to unpack .../003-cpp-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ...
909s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ...
910s Selecting previously unselected package cpp-13.
910s Preparing to unpack .../004-cpp-13_13.2.0-23ubuntu4_ppc64el.deb ...
910s Unpacking cpp-13 (13.2.0-23ubuntu4) ...
910s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
910s Preparing to unpack .../005-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
910s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
910s Selecting previously unselected package cpp.
910s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
910s Unpacking cpp (4:13.2.0-7ubuntu1) ...
910s Selecting previously unselected package libcc1-0:ppc64el.
910s Preparing to unpack .../007-libcc1-0_14.1.0-1ubuntu1_ppc64el.deb ...
910s Unpacking libcc1-0:ppc64el (14.1.0-1ubuntu1) ...
910s Selecting previously unselected package libgomp1:ppc64el.
910s Preparing to unpack .../008-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ...
910s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ...
910s Selecting previously unselected package libitm1:ppc64el.
910s Preparing to unpack .../009-libitm1_14.1.0-1ubuntu1_ppc64el.deb ...
910s Unpacking libitm1:ppc64el (14.1.0-1ubuntu1) ...
910s Selecting previously unselected package libatomic1:ppc64el.
910s Preparing to unpack .../010-libatomic1_14.1.0-1ubuntu1_ppc64el.deb ...
910s Unpacking libatomic1:ppc64el (14.1.0-1ubuntu1) ...
910s Selecting previously unselected package libasan8:ppc64el.
910s Preparing to unpack .../011-libasan8_14.1.0-1ubuntu1_ppc64el.deb ...
910s Unpacking libasan8:ppc64el (14.1.0-1ubuntu1) ...
911s Selecting previously unselected package liblsan0:ppc64el.
911s Preparing to unpack .../012-liblsan0_14.1.0-1ubuntu1_ppc64el.deb ...
911s Unpacking liblsan0:ppc64el (14.1.0-1ubuntu1) ...
911s Selecting previously unselected package libtsan2:ppc64el.
911s Preparing to unpack .../013-libtsan2_14.1.0-1ubuntu1_ppc64el.deb ...
911s Unpacking libtsan2:ppc64el (14.1.0-1ubuntu1) ...
911s Selecting previously unselected package libubsan1:ppc64el.
911s Preparing to unpack .../014-libubsan1_14.1.0-1ubuntu1_ppc64el.deb ...
911s Unpacking libubsan1:ppc64el (14.1.0-1ubuntu1) ...
911s Selecting previously unselected package libquadmath0:ppc64el.
911s Preparing to unpack .../015-libquadmath0_14.1.0-1ubuntu1_ppc64el.deb ...
911s Unpacking libquadmath0:ppc64el (14.1.0-1ubuntu1) ...
911s Selecting previously unselected package libgcc-13-dev:ppc64el.
911s Preparing to unpack .../016-libgcc-13-dev_13.2.0-23ubuntu4_ppc64el.deb ...
911s Unpacking libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ...
911s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu.
911s Preparing to unpack .../017-gcc-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ...
911s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ...
912s Selecting previously unselected package gcc-13.
912s Preparing to unpack .../018-gcc-13_13.2.0-23ubuntu4_ppc64el.deb ...
912s Unpacking gcc-13 (13.2.0-23ubuntu4) ...
912s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
912s Preparing to unpack .../019-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
912s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
912s Selecting previously unselected package gcc.
912s Preparing to unpack .../020-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
912s Unpacking gcc (4:13.2.0-7ubuntu1) ...
912s Selecting previously unselected package libstdc++-13-dev:ppc64el.
912s Preparing to unpack .../021-libstdc++-13-dev_13.2.0-23ubuntu4_ppc64el.deb ...
912s Unpacking libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ...
913s Selecting previously unselected package g++-13-powerpc64le-linux-gnu.
913s Preparing to unpack .../022-g++-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ...
913s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ...
913s Selecting previously unselected package g++-13.
914s Preparing to unpack .../023-g++-13_13.2.0-23ubuntu4_ppc64el.deb ...
914s Unpacking g++-13 (13.2.0-23ubuntu4) ...
914s Selecting previously unselected package g++-powerpc64le-linux-gnu.
914s Preparing to unpack .../024-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
914s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
914s Selecting previously unselected package g++.
914s Preparing to unpack .../025-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
914s Unpacking g++ (4:13.2.0-7ubuntu1) ...
914s Selecting previously unselected package build-essential.
914s Preparing to unpack .../026-build-essential_12.10ubuntu1_ppc64el.deb ...
914s Unpacking build-essential (12.10ubuntu1) ...
914s Selecting previously unselected package dctrl-tools.
914s Preparing to unpack .../027-dctrl-tools_2.24-3build3_ppc64el.deb ...
914s Unpacking dctrl-tools (2.24-3build3) ...
914s Selecting previously unselected package fontconfig.
914s Preparing to unpack .../028-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ...
914s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
914s Selecting previously unselected package fonts-font-awesome.
914s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
914s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
914s Selecting previously unselected package fonts-glyphicons-halflings.
914s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
914s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
914s Selecting previously unselected package fonts-mathjax.
914s Preparing to unpack .../031-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
914s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
914s Selecting previously unselected package gdal-data.
914s Preparing to unpack .../032-gdal-data_3.8.5+dfsg-1_all.deb ...
914s Unpacking gdal-data (3.8.5+dfsg-1) ...
915s Selecting previously unselected package gdal-plugins:ppc64el.
915s Preparing to unpack .../033-gdal-plugins_3.8.5+dfsg-1_ppc64el.deb ...
915s Unpacking gdal-plugins:ppc64el (3.8.5+dfsg-1) ...
915s Selecting previously unselected package libgfortran5:ppc64el.
915s Preparing to unpack .../034-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ...
915s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ...
915s Selecting previously unselected package libgfortran-13-dev:ppc64el.
915s Preparing to unpack .../035-libgfortran-13-dev_13.2.0-23ubuntu4_ppc64el.deb ...
915s Unpacking libgfortran-13-dev:ppc64el (13.2.0-23ubuntu4) ...
915s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu.
915s Preparing to unpack .../036-gfortran-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ...
915s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ...
915s Selecting previously unselected package gfortran-13.
915s Preparing to unpack .../037-gfortran-13_13.2.0-23ubuntu4_ppc64el.deb ...
915s Unpacking gfortran-13 (13.2.0-23ubuntu4) ...
915s Selecting previously unselected package gfortran-powerpc64le-linux-gnu.
915s Preparing to unpack .../038-gfortran-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
915s Unpacking gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
915s Selecting previously unselected package gfortran.
915s Preparing to unpack .../039-gfortran_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
915s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
916s Selecting previously unselected package icu-devtools.
916s Preparing to unpack .../040-icu-devtools_74.2-1ubuntu3_ppc64el.deb ...
916s Unpacking icu-devtools (74.2-1ubuntu3) ...
916s Selecting previously unselected package javascript-common.
916s Preparing to unpack .../041-javascript-common_11+nmu1_all.deb ...
916s Unpacking javascript-common (11+nmu1) ...
916s Selecting previously unselected package libaec0:ppc64el.
916s Preparing to unpack .../042-libaec0_1.1.3-1_ppc64el.deb ...
916s Unpacking libaec0:ppc64el (1.1.3-1) ...
916s Selecting previously unselected package libblas3:ppc64el.
916s Preparing to unpack .../043-libblas3_3.12.0-3build1_ppc64el.deb ...
916s Unpacking libblas3:ppc64el (3.12.0-3build1) ...
916s Selecting previously unselected package liblapack3:ppc64el.
916s Preparing to unpack .../044-liblapack3_3.12.0-3build1_ppc64el.deb ...
916s Unpacking liblapack3:ppc64el (3.12.0-3build1) ...
916s Selecting previously unselected package libarpack2t64:ppc64el.
916s Preparing to unpack .../045-libarpack2t64_3.9.1-1.1build2_ppc64el.deb ...
916s Unpacking libarpack2t64:ppc64el (3.9.1-1.1build2) ...
916s Selecting previously unselected package libsuperlu6:ppc64el.
916s Preparing to unpack .../046-libsuperlu6_6.0.1+dfsg1-1build1_ppc64el.deb ...
916s Unpacking libsuperlu6:ppc64el (6.0.1+dfsg1-1build1) ...
916s Selecting previously unselected package libarmadillo12.
916s Preparing to unpack .../047-libarmadillo12_1%3a12.8.2+dfsg-1_ppc64el.deb ...
916s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ...
916s Selecting previously unselected package libblas-dev:ppc64el.
916s Preparing to unpack .../048-libblas-dev_3.12.0-3build1_ppc64el.deb ...
916s Unpacking libblas-dev:ppc64el (3.12.0-3build1) ...
916s Selecting previously unselected package libsnappy1v5:ppc64el.
916s Preparing to unpack .../049-libsnappy1v5_1.2.1-1_ppc64el.deb ...
916s Unpacking libsnappy1v5:ppc64el (1.2.1-1) ...
916s Selecting previously unselected package libblosc1:ppc64el.
916s Preparing to unpack .../050-libblosc1_1.21.5+ds-1build1_ppc64el.deb ...
916s Unpacking libblosc1:ppc64el (1.21.5+ds-1build1) ...
916s Selecting previously unselected package libbz2-dev:ppc64el.
916s Preparing to unpack .../051-libbz2-dev_1.0.8-5.1_ppc64el.deb ...
916s Unpacking libbz2-dev:ppc64el (1.0.8-5.1) ...
916s Selecting previously unselected package libpixman-1-0:ppc64el.
916s Preparing to unpack .../052-libpixman-1-0_0.42.2-1build1_ppc64el.deb ...
916s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ...
916s Selecting previously unselected package libxcb-render0:ppc64el.
916s Preparing to unpack .../053-libxcb-render0_1.17.0-2_ppc64el.deb ...
916s Unpacking libxcb-render0:ppc64el (1.17.0-2) ...
916s Selecting previously unselected package libxcb-shm0:ppc64el.
916s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_ppc64el.deb ...
916s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ...
916s Selecting previously unselected package libxrender1:ppc64el.
916s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
916s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
916s Selecting previously unselected package libcairo2:ppc64el.
916s Preparing to unpack .../056-libcairo2_1.18.0-3build1_ppc64el.deb ...
916s Unpacking libcairo2:ppc64el (1.18.0-3build1) ...
916s Selecting previously unselected package libcfitsio10t64:ppc64el.
916s Preparing to unpack .../057-libcfitsio10t64_4.3.1-1.1build2_ppc64el.deb ...
916s Unpacking libcfitsio10t64:ppc64el (4.3.1-1.1build2) ...
916s Selecting previously unselected package libdatrie1:ppc64el.
916s Preparing to unpack .../058-libdatrie1_0.2.13-3build1_ppc64el.deb ...
916s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ...
916s Selecting previously unselected package libdeflate-dev:ppc64el.
916s Preparing to unpack .../059-libdeflate-dev_1.20-1_ppc64el.deb ...
916s Unpacking libdeflate-dev:ppc64el (1.20-1) ...
916s Selecting previously unselected package libfyba0t64:ppc64el.
916s Preparing to unpack .../060-libfyba0t64_4.1.1-11build1_ppc64el.deb ...
916s Unpacking libfyba0t64:ppc64el (4.1.1-11build1) ...
916s Selecting previously unselected package libminizip1t64:ppc64el.
916s Preparing to unpack .../061-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ...
916s Unpacking libminizip1t64:ppc64el (1:1.3.dfsg-3.1ubuntu2) ...
916s Selecting previously unselected package libfreexl1:ppc64el.
916s Preparing to unpack .../062-libfreexl1_2.0.0-1build2_ppc64el.deb ...
917s Unpacking libfreexl1:ppc64el (2.0.0-1build2) ...
917s Selecting previously unselected package libgeos3.12.1t64:ppc64el.
917s Preparing to unpack .../063-libgeos3.12.1t64_3.12.1-3build1_ppc64el.deb ...
917s Unpacking libgeos3.12.1t64:ppc64el (3.12.1-3build1) ...
917s Selecting previously unselected package libgeos-c1t64:ppc64el.
917s Preparing to unpack .../064-libgeos-c1t64_3.12.1-3build1_ppc64el.deb ...
917s Unpacking libgeos-c1t64:ppc64el (3.12.1-3build1) ...
917s Selecting previously unselected package proj-data.
917s Preparing to unpack .../065-proj-data_9.4.0-1build2_all.deb ...
917s Unpacking proj-data (9.4.0-1build2) ...
917s Selecting previously unselected package libproj25:ppc64el.
917s Preparing to unpack .../066-libproj25_9.4.0-1build2_ppc64el.deb ...
917s Unpacking libproj25:ppc64el (9.4.0-1build2) ...
917s Selecting previously unselected package libgeotiff5:ppc64el.
917s Preparing to unpack .../067-libgeotiff5_1.7.1-5build1_ppc64el.deb ...
917s Unpacking libgeotiff5:ppc64el (1.7.1-5build1) ...
917s Selecting previously unselected package libgif7:ppc64el.
917s Preparing to unpack .../068-libgif7_5.2.2-1ubuntu1_ppc64el.deb ...
917s Unpacking libgif7:ppc64el (5.2.2-1ubuntu1) ...
917s Selecting previously unselected package libsz2:ppc64el.
917s Preparing to unpack .../069-libsz2_1.1.3-1_ppc64el.deb ...
917s Unpacking libsz2:ppc64el (1.1.3-1) ...
917s Selecting previously unselected package libhdf4-0-alt:ppc64el.
917s Preparing to unpack .../070-libhdf4-0-alt_4.3.0-1_ppc64el.deb ...
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917s Selecting previously unselected package libhdf5-103-1t64:ppc64el.
917s Preparing to unpack .../071-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ...
917s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu4) ...
917s Selecting previously unselected package liburiparser1:ppc64el.
917s Preparing to unpack .../072-liburiparser1_0.9.7+dfsg-2build1_ppc64el.deb ...
917s Unpacking liburiparser1:ppc64el (0.9.7+dfsg-2build1) ...
918s Selecting previously unselected package libkmlbase1t64:ppc64el.
918s Preparing to unpack .../073-libkmlbase1t64_1.3.0-12build1_ppc64el.deb ...
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918s Selecting previously unselected package libkmldom1t64:ppc64el.
918s Preparing to unpack .../074-libkmldom1t64_1.3.0-12build1_ppc64el.deb ...
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918s Selecting previously unselected package libkmlengine1t64:ppc64el.
918s Preparing to unpack .../075-libkmlengine1t64_1.3.0-12build1_ppc64el.deb ...
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918s Selecting previously unselected package mysql-common.
918s Preparing to unpack .../076-mysql-common_5.8+1.1.0build1_all.deb ...
918s Unpacking mysql-common (5.8+1.1.0build1) ...
918s Selecting previously unselected package libmysqlclient21:ppc64el.
918s Preparing to unpack .../077-libmysqlclient21_8.0.37-1_ppc64el.deb ...
918s Unpacking libmysqlclient21:ppc64el (8.0.37-1) ...
918s Selecting previously unselected package libhdf5-hl-100t64:ppc64el.
918s Preparing to unpack .../078-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ...
918s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu4) ...
918s Selecting previously unselected package libnetcdf19t64:ppc64el.
918s Preparing to unpack .../079-libnetcdf19t64_1%3a4.9.2-5ubuntu4_ppc64el.deb ...
918s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-5ubuntu4) ...
918s Selecting previously unselected package libltdl7:ppc64el.
918s Preparing to unpack .../080-libltdl7_2.4.7-7build1_ppc64el.deb ...
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918s Selecting previously unselected package libodbc2:ppc64el.
918s Preparing to unpack .../081-libodbc2_2.3.12-1build2_ppc64el.deb ...
918s Unpacking libodbc2:ppc64el (2.3.12-1build2) ...
918s Selecting previously unselected package unixodbc-common.
918s Preparing to unpack .../082-unixodbc-common_2.3.12-1build2_all.deb ...
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918s Selecting previously unselected package libodbcinst2:ppc64el.
918s Preparing to unpack .../083-libodbcinst2_2.3.12-1build2_ppc64el.deb ...
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918s Selecting previously unselected package libogdi4.1:ppc64el.
918s Preparing to unpack .../084-libogdi4.1_4.1.1+ds-4_ppc64el.deb ...
918s Unpacking libogdi4.1:ppc64el (4.1.1+ds-4) ...
918s Selecting previously unselected package libopenjp2-7:ppc64el.
918s Preparing to unpack .../085-libopenjp2-7_2.5.0-2build3_ppc64el.deb ...
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918s Selecting previously unselected package liblcms2-2:ppc64el.
918s Preparing to unpack .../086-liblcms2-2_2.14-2build1_ppc64el.deb ...
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918s Selecting previously unselected package libpoppler134:ppc64el.
918s Preparing to unpack .../087-libpoppler134_24.02.0-1ubuntu9_ppc64el.deb ...
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918s Selecting previously unselected package libpq5:ppc64el.
918s Preparing to unpack .../088-libpq5_16.2-1ubuntu4_ppc64el.deb ...
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918s Selecting previously unselected package libqhull-r8.0:ppc64el.
918s Preparing to unpack .../089-libqhull-r8.0_2020.2-6build1_ppc64el.deb ...
918s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ...
919s Selecting previously unselected package librttopo1:ppc64el.
919s Preparing to unpack .../090-librttopo1_1.1.0-3build2_ppc64el.deb ...
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919s Selecting previously unselected package libspatialite8t64:ppc64el.
919s Preparing to unpack .../091-libspatialite8t64_5.1.0-3build1_ppc64el.deb ...
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919s Selecting previously unselected package libxerces-c3.2t64:ppc64el.
919s Preparing to unpack .../092-libxerces-c3.2t64_3.2.4+debian-1.3_ppc64el.deb ...
919s Unpacking libxerces-c3.2t64:ppc64el (3.2.4+debian-1.3) ...
919s Selecting previously unselected package libgdal34t64:ppc64el.
919s Preparing to unpack .../093-libgdal34t64_3.8.5+dfsg-1_ppc64el.deb ...
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919s Selecting previously unselected package libgraphite2-3:ppc64el.
919s Preparing to unpack .../094-libgraphite2-3_1.3.14-2build1_ppc64el.deb ...
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919s Selecting previously unselected package libharfbuzz0b:ppc64el.
919s Preparing to unpack .../095-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ...
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919s Selecting previously unselected package x11-common.
919s Preparing to unpack .../096-x11-common_1%3a7.7+23ubuntu3_all.deb ...
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919s Selecting previously unselected package libice6:ppc64el.
919s Preparing to unpack .../097-libice6_2%3a1.0.10-1build3_ppc64el.deb ...
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919s Selecting previously unselected package libicu-dev:ppc64el.
919s Preparing to unpack .../098-libicu-dev_74.2-1ubuntu3_ppc64el.deb ...
919s Unpacking libicu-dev:ppc64el (74.2-1ubuntu3) ...
920s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el.
920s Preparing to unpack .../099-libjpeg-turbo8-dev_2.1.5-2ubuntu2_ppc64el.deb ...
920s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu2) ...
920s Selecting previously unselected package libjpeg8-dev:ppc64el.
920s Preparing to unpack .../100-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ...
920s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
920s Selecting previously unselected package libjpeg-dev:ppc64el.
920s Preparing to unpack .../101-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ...
920s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ...
920s Selecting previously unselected package libjs-bootstrap.
920s Preparing to unpack .../102-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
920s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
920s Selecting previously unselected package libjs-popper.js.
920s Preparing to unpack .../103-libjs-popper.js_1.16.1+ds-6_all.deb ...
920s Unpacking libjs-popper.js (1.16.1+ds-6) ...
921s Selecting previously unselected package libjs-bootstrap4.
921s Preparing to unpack .../104-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
921s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
921s Selecting previously unselected package libjs-d3.
921s Preparing to unpack .../105-libjs-d3_3.5.17-4_all.deb ...
921s Unpacking libjs-d3 (3.5.17-4) ...
921s Selecting previously unselected package libjs-es5-shim.
921s Preparing to unpack .../106-libjs-es5-shim_4.6.7-2_all.deb ...
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921s Selecting previously unselected package libjs-highlight.js.
921s Preparing to unpack .../107-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
921s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
921s Selecting previously unselected package libjs-jquery.
921s Preparing to unpack .../108-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
921s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
921s Selecting previously unselected package libjs-jquery-datatables.
921s Preparing to unpack .../109-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
921s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
921s Selecting previously unselected package libjs-sifter.js.
921s Preparing to unpack .../110-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
921s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
921s Selecting previously unselected package libjs-microplugin.js.
921s Preparing to unpack .../111-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
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921s Selecting previously unselected package libjs-jquery-selectize.js.
921s Preparing to unpack .../112-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
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921s Selecting previously unselected package libjs-jquery-ui.
921s Preparing to unpack .../113-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
921s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
921s Selecting previously unselected package libjs-json.
921s Preparing to unpack .../114-libjs-json_0~20221030+~1.0.8-1_all.deb ...
921s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
921s Selecting previously unselected package libjs-prettify.
921s Preparing to unpack .../115-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
921s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
921s Selecting previously unselected package liblapack-dev:ppc64el.
921s Preparing to unpack .../116-liblapack-dev_3.12.0-3build1_ppc64el.deb ...
921s Unpacking liblapack-dev:ppc64el (3.12.0-3build1) ...
922s Selecting previously unselected package libncurses-dev:ppc64el.
922s Preparing to unpack .../117-libncurses-dev_6.4+20240113-1ubuntu2_ppc64el.deb ...
922s Unpacking libncurses-dev:ppc64el (6.4+20240113-1ubuntu2) ...
922s Selecting previously unselected package libthai-data.
922s Preparing to unpack .../118-libthai-data_0.1.29-2build1_all.deb ...
922s Unpacking libthai-data (0.1.29-2build1) ...
922s Selecting previously unselected package libthai0:ppc64el.
922s Preparing to unpack .../119-libthai0_0.1.29-2build1_ppc64el.deb ...
922s Unpacking libthai0:ppc64el (0.1.29-2build1) ...
922s Selecting previously unselected package libpango-1.0-0:ppc64el.
922s Preparing to unpack .../120-libpango-1.0-0_1.52.2+ds-1_ppc64el.deb ...
922s Unpacking libpango-1.0-0:ppc64el (1.52.2+ds-1) ...
922s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
922s Preparing to unpack .../121-libpangoft2-1.0-0_1.52.2+ds-1_ppc64el.deb ...
922s Unpacking libpangoft2-1.0-0:ppc64el (1.52.2+ds-1) ...
922s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
922s Preparing to unpack .../122-libpangocairo-1.0-0_1.52.2+ds-1_ppc64el.deb ...
922s Unpacking libpangocairo-1.0-0:ppc64el (1.52.2+ds-1) ...
922s Selecting previously unselected package libpaper1:ppc64el.
922s Preparing to unpack .../123-libpaper1_1.1.29build1_ppc64el.deb ...
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922s Selecting previously unselected package libpaper-utils.
922s Preparing to unpack .../124-libpaper-utils_1.1.29build1_ppc64el.deb ...
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922s Selecting previously unselected package libpcre2-16-0:ppc64el.
922s Preparing to unpack .../125-libpcre2-16-0_10.42-4ubuntu2_ppc64el.deb ...
922s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu2) ...
922s Selecting previously unselected package libpcre2-32-0:ppc64el.
922s Preparing to unpack .../126-libpcre2-32-0_10.42-4ubuntu2_ppc64el.deb ...
922s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu2) ...
922s Selecting previously unselected package libpcre2-posix3:ppc64el.
922s Preparing to unpack .../127-libpcre2-posix3_10.42-4ubuntu2_ppc64el.deb ...
922s Unpacking libpcre2-posix3:ppc64el (10.42-4ubuntu2) ...
922s Selecting previously unselected package libpcre2-dev:ppc64el.
922s Preparing to unpack .../128-libpcre2-dev_10.42-4ubuntu2_ppc64el.deb ...
922s Unpacking libpcre2-dev:ppc64el (10.42-4ubuntu2) ...
922s Selecting previously unselected package libpkgconf3:ppc64el.
922s Preparing to unpack .../129-libpkgconf3_1.8.1-2build1_ppc64el.deb ...
922s Unpacking libpkgconf3:ppc64el (1.8.1-2build1) ...
922s Selecting previously unselected package zlib1g-dev:ppc64el.
922s Preparing to unpack .../130-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ...
922s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ...
923s Selecting previously unselected package libpng-dev:ppc64el.
923s Preparing to unpack .../131-libpng-dev_1.6.43-5build1_ppc64el.deb ...
923s Unpacking libpng-dev:ppc64el (1.6.43-5build1) ...
923s Selecting previously unselected package libreadline-dev:ppc64el.
923s Preparing to unpack .../132-libreadline-dev_8.2-4build1_ppc64el.deb ...
923s Unpacking libreadline-dev:ppc64el (8.2-4build1) ...
923s Selecting previously unselected package libsm6:ppc64el.
923s Preparing to unpack .../133-libsm6_2%3a1.2.3-1build3_ppc64el.deb ...
923s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ...
923s Selecting previously unselected package libtcl8.6:ppc64el.
923s Preparing to unpack .../134-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ...
923s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ...
923s Selecting previously unselected package libxft2:ppc64el.
923s Preparing to unpack .../135-libxft2_2.3.6-1build1_ppc64el.deb ...
923s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
923s Selecting previously unselected package libxss1:ppc64el.
923s Preparing to unpack .../136-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
923s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
923s Selecting previously unselected package libtk8.6:ppc64el.
923s Preparing to unpack .../137-libtk8.6_8.6.14-1build1_ppc64el.deb ...
923s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ...
923s Selecting previously unselected package libudunits2-data.
923s Preparing to unpack .../138-libudunits2-data_2.2.28-7build1_all.deb ...
923s Unpacking libudunits2-data (2.2.28-7build1) ...
923s Selecting previously unselected package libudunits2-0.
923s Preparing to unpack .../139-libudunits2-0_2.2.28-7build1_ppc64el.deb ...
923s Unpacking libudunits2-0 (2.2.28-7build1) ...
923s Selecting previously unselected package libxt6t64:ppc64el.
923s Preparing to unpack .../140-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ...
923s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
923s Selecting previously unselected package zip.
923s Preparing to unpack .../141-zip_3.0-13build1_ppc64el.deb ...
923s Unpacking zip (3.0-13build1) ...
923s Selecting previously unselected package unzip.
923s Preparing to unpack .../142-unzip_6.0-28ubuntu4_ppc64el.deb ...
923s Unpacking unzip (6.0-28ubuntu4) ...
923s Selecting previously unselected package xdg-utils.
923s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
923s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
923s Selecting previously unselected package r-base-core.
923s Preparing to unpack .../144-r-base-core_4.4.0-2_ppc64el.deb ...
923s Unpacking r-base-core (4.4.0-2) ...
925s Selecting previously unselected package r-cran-littler.
925s Preparing to unpack .../145-r-cran-littler_0.3.20-1_ppc64el.deb ...
925s Unpacking r-cran-littler (0.3.20-1) ...
925s Selecting previously unselected package littler.
925s Preparing to unpack .../146-littler_0.3.20-1_all.deb ...
925s Unpacking littler (0.3.20-1) ...
925s Selecting previously unselected package node-bootstrap-sass.
925s Preparing to unpack .../147-node-bootstrap-sass_3.4.3-2_all.deb ...
925s Unpacking node-bootstrap-sass (3.4.3-2) ...
925s Selecting previously unselected package node-html5shiv.
925s Preparing to unpack .../148-node-html5shiv_3.7.3+dfsg-5_all.deb ...
925s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
925s Selecting previously unselected package node-normalize.css.
925s Preparing to unpack .../149-node-normalize.css_8.0.1-5_all.deb ...
925s Unpacking node-normalize.css (8.0.1-5) ...
925s Selecting previously unselected package pandoc-data.
925s Preparing to unpack .../150-pandoc-data_3.1.3-2build2_all.deb ...
925s Unpacking pandoc-data (3.1.3-2build2) ...
925s Selecting previously unselected package pandoc.
925s Preparing to unpack .../151-pandoc_3.1.3+ds-3build1_ppc64el.deb ...
925s Unpacking pandoc (3.1.3+ds-3build1) ...
928s Selecting previously unselected package liblzma-dev:ppc64el.
928s Preparing to unpack .../152-liblzma-dev_5.6.1+really5.4.5-1_ppc64el.deb ...
928s Unpacking liblzma-dev:ppc64el (5.6.1+really5.4.5-1) ...
928s Selecting previously unselected package pkgconf-bin.
928s Preparing to unpack .../153-pkgconf-bin_1.8.1-2build1_ppc64el.deb ...
928s Unpacking pkgconf-bin (1.8.1-2build1) ...
928s Selecting previously unselected package pkgconf:ppc64el.
928s Preparing to unpack .../154-pkgconf_1.8.1-2build1_ppc64el.deb ...
928s Unpacking pkgconf:ppc64el (1.8.1-2build1) ...
928s Selecting previously unselected package libtirpc-dev:ppc64el.
928s Preparing to unpack .../155-libtirpc-dev_1.3.4+ds-1.3_ppc64el.deb ...
928s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1.3) ...
928s Selecting previously unselected package r-base-dev.
928s Preparing to unpack .../156-r-base-dev_4.4.0-2_all.deb ...
928s Unpacking r-base-dev (4.4.0-2) ...
928s Selecting previously unselected package pkg-r-autopkgtest.
928s Preparing to unpack .../157-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
928s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
928s Selecting previously unselected package r-cran-abind.
928s Preparing to unpack .../158-r-cran-abind_1.4-5-2_all.deb ...
928s Unpacking r-cran-abind (1.4-5-2) ...
928s Selecting previously unselected package r-cran-sys.
928s Preparing to unpack .../159-r-cran-sys_3.4.2-1_ppc64el.deb ...
928s Unpacking r-cran-sys (3.4.2-1) ...
928s Selecting previously unselected package r-cran-askpass.
928s Preparing to unpack .../160-r-cran-askpass_1.2.0-1_ppc64el.deb ...
928s Unpacking r-cran-askpass (1.2.0-1) ...
928s Selecting previously unselected package r-cran-base64enc.
928s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3_ppc64el.deb ...
928s Unpacking r-cran-base64enc (0.1-3-3) ...
928s Selecting previously unselected package r-cran-bit.
928s Preparing to unpack .../162-r-cran-bit_4.0.5-1_ppc64el.deb ...
928s Unpacking r-cran-bit (4.0.5-1) ...
929s Selecting previously unselected package r-cran-bit64.
929s Preparing to unpack .../163-r-cran-bit64_4.0.5-1_ppc64el.deb ...
929s Unpacking r-cran-bit64 (4.0.5-1) ...
929s Selecting previously unselected package r-cran-rlang.
929s Preparing to unpack .../164-r-cran-rlang_1.1.3-1_ppc64el.deb ...
929s Unpacking r-cran-rlang (1.1.3-1) ...
929s Selecting previously unselected package r-cran-cli.
929s Preparing to unpack .../165-r-cran-cli_3.6.2-1_ppc64el.deb ...
929s Unpacking r-cran-cli (3.6.2-1) ...
929s Selecting previously unselected package r-cran-glue.
929s Preparing to unpack .../166-r-cran-glue_1.7.0-1_ppc64el.deb ...
929s Unpacking r-cran-glue (1.7.0-1) ...
929s Selecting previously unselected package r-cran-lifecycle.
929s Preparing to unpack .../167-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
929s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
929s Selecting previously unselected package r-cran-vctrs.
929s Preparing to unpack .../168-r-cran-vctrs_0.6.5-1_ppc64el.deb ...
929s Unpacking r-cran-vctrs (0.6.5-1) ...
929s Selecting previously unselected package r-cran-blob.
929s Preparing to unpack .../169-r-cran-blob_1.2.4-1_all.deb ...
929s Unpacking r-cran-blob (1.2.4-1) ...
929s Selecting previously unselected package r-cran-brio.
929s Preparing to unpack .../170-r-cran-brio_1.1.5-1_ppc64el.deb ...
929s Unpacking r-cran-brio (1.1.5-1) ...
929s Selecting previously unselected package r-cran-fastmap.
929s Preparing to unpack .../171-r-cran-fastmap_1.1.1-1_ppc64el.deb ...
929s Unpacking r-cran-fastmap (1.1.1-1) ...
929s Selecting previously unselected package r-cran-cachem.
929s Preparing to unpack .../172-r-cran-cachem_1.0.8-1_ppc64el.deb ...
929s Unpacking r-cran-cachem (1.0.8-1) ...
929s Selecting previously unselected package r-cran-digest.
929s Preparing to unpack .../173-r-cran-digest_0.6.35-1_ppc64el.deb ...
929s Unpacking r-cran-digest (0.6.35-1) ...
930s Selecting previously unselected package r-cran-htmltools.
930s Preparing to unpack .../174-r-cran-htmltools_0.5.8.1-1_ppc64el.deb ...
930s Unpacking r-cran-htmltools (0.5.8.1-1) ...
930s Selecting previously unselected package r-cran-jquerylib.
930s Preparing to unpack .../175-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
930s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
930s Selecting previously unselected package r-cran-jsonlite.
930s Preparing to unpack .../176-r-cran-jsonlite_1.8.8+dfsg-1_ppc64el.deb ...
930s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
930s Selecting previously unselected package r-cran-memoise.
930s Preparing to unpack .../177-r-cran-memoise_2.0.1-1_all.deb ...
930s Unpacking r-cran-memoise (2.0.1-1) ...
930s Selecting previously unselected package r-cran-mime.
930s Preparing to unpack .../178-r-cran-mime_0.12-2_ppc64el.deb ...
930s Unpacking r-cran-mime (0.12-2) ...
930s Selecting previously unselected package r-cran-fs.
930s Preparing to unpack .../179-r-cran-fs_1.6.3+dfsg-1build2_ppc64el.deb ...
930s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
930s Selecting previously unselected package r-cran-r6.
930s Preparing to unpack .../180-r-cran-r6_2.5.1-1_all.deb ...
930s Unpacking r-cran-r6 (2.5.1-1) ...
930s Selecting previously unselected package r-cran-rappdirs.
930s Preparing to unpack .../181-r-cran-rappdirs_0.3.3-1_ppc64el.deb ...
930s Unpacking r-cran-rappdirs (0.3.3-1) ...
930s Selecting previously unselected package r-cran-sass.
930s Preparing to unpack .../182-r-cran-sass_0.4.9+dfsg-1_ppc64el.deb ...
930s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
931s Selecting previously unselected package r-cran-bslib.
931s Preparing to unpack .../183-r-cran-bslib_0.7.0+dfsg-1_all.deb ...
931s Unpacking r-cran-bslib (0.7.0+dfsg-1) ...
931s Selecting previously unselected package r-cran-ps.
931s Preparing to unpack .../184-r-cran-ps_1.7.6-1_ppc64el.deb ...
931s Unpacking r-cran-ps (1.7.6-1) ...
931s Selecting previously unselected package r-cran-processx.
931s Preparing to unpack .../185-r-cran-processx_3.8.3-1_ppc64el.deb ...
931s Unpacking r-cran-processx (3.8.3-1) ...
931s Selecting previously unselected package r-cran-callr.
931s Preparing to unpack .../186-r-cran-callr_3.7.6-1_all.deb ...
931s Unpacking r-cran-callr (3.7.6-1) ...
932s Selecting previously unselected package r-cran-mass.
932s Preparing to unpack .../187-r-cran-mass_7.3-60.2-1_ppc64el.deb ...
932s Unpacking r-cran-mass (7.3-60.2-1) ...
932s Selecting previously unselected package r-cran-class.
932s Preparing to unpack .../188-r-cran-class_7.3-22-2build1_ppc64el.deb ...
932s Unpacking r-cran-class (7.3-22-2build1) ...
932s Selecting previously unselected package r-cran-proxy.
932s Preparing to unpack .../189-r-cran-proxy_0.4-27-1_ppc64el.deb ...
932s Unpacking r-cran-proxy (0.4-27-1) ...
932s Selecting previously unselected package r-cran-e1071.
932s Preparing to unpack .../190-r-cran-e1071_1.7-14-1_ppc64el.deb ...
932s Unpacking r-cran-e1071 (1.7-14-1) ...
932s Selecting previously unselected package r-cran-kernsmooth.
932s Preparing to unpack .../191-r-cran-kernsmooth_2.23-24-1_ppc64el.deb ...
932s Unpacking r-cran-kernsmooth (2.23-24-1) ...
932s Selecting previously unselected package r-cran-classint.
932s Preparing to unpack .../192-r-cran-classint_0.4-10+dfsg-1_ppc64el.deb ...
932s Unpacking r-cran-classint (0.4-10+dfsg-1) ...
932s Selecting previously unselected package r-cran-colorspace.
932s Preparing to unpack .../193-r-cran-colorspace_2.1-0+dfsg-1_ppc64el.deb ...
932s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
932s Selecting previously unselected package r-cran-commonmark.
932s Preparing to unpack .../194-r-cran-commonmark_1.9.1-1_ppc64el.deb ...
932s Unpacking r-cran-commonmark (1.9.1-1) ...
932s Selecting previously unselected package r-cran-lazyeval.
932s Preparing to unpack .../195-r-cran-lazyeval_0.2.2-1build1_ppc64el.deb ...
932s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
932s Selecting previously unselected package r-cran-rex.
932s Preparing to unpack .../196-r-cran-rex_1.2.1-1_all.deb ...
932s Unpacking r-cran-rex (1.2.1-1) ...
933s Selecting previously unselected package r-cran-curl.
933s Preparing to unpack .../197-r-cran-curl_5.2.0+dfsg-1build2_ppc64el.deb ...
933s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ...
933s Selecting previously unselected package r-cran-openssl.
933s Preparing to unpack .../198-r-cran-openssl_2.1.1+dfsg-2build2_ppc64el.deb ...
933s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ...
933s Selecting previously unselected package r-cran-httr.
933s Preparing to unpack .../199-r-cran-httr_1.4.7+dfsg-1_all.deb ...
933s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
933s Selecting previously unselected package r-cran-crayon.
933s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ...
933s Unpacking r-cran-crayon (1.5.2-1) ...
933s Selecting previously unselected package r-cran-withr.
933s Preparing to unpack .../201-r-cran-withr_2.5.0-1_all.deb ...
933s Unpacking r-cran-withr (2.5.0-1) ...
933s Selecting previously unselected package r-cran-yaml.
933s Preparing to unpack .../202-r-cran-yaml_2.3.8-2_ppc64el.deb ...
933s Unpacking r-cran-yaml (2.3.8-2) ...
933s Selecting previously unselected package r-cran-covr.
933s Preparing to unpack .../203-r-cran-covr_3.6.4+dfsg-1_ppc64el.deb ...
933s Unpacking r-cran-covr (3.6.4+dfsg-1) ...
933s Selecting previously unselected package r-cran-cpp11.
933s Preparing to unpack .../204-r-cran-cpp11_0.4.7-1_all.deb ...
933s Unpacking r-cran-cpp11 (0.4.7-1) ...
933s Selecting previously unselected package r-cran-dbi.
933s Preparing to unpack .../205-r-cran-dbi_1.2.2-1_all.deb ...
933s Unpacking r-cran-dbi (1.2.2-1) ...
933s Selecting previously unselected package r-cran-deldir.
933s Preparing to unpack .../206-r-cran-deldir_2.0-4-1build1_ppc64el.deb ...
933s Unpacking r-cran-deldir (2.0-4-1build1) ...
933s Selecting previously unselected package r-cran-desc.
933s Preparing to unpack .../207-r-cran-desc_1.4.3-1_all.deb ...
933s Unpacking r-cran-desc (1.4.3-1) ...
933s Selecting previously unselected package r-cran-diffobj.
933s Preparing to unpack .../208-r-cran-diffobj_0.3.5-1_ppc64el.deb ...
933s Unpacking r-cran-diffobj (0.3.5-1) ...
934s Selecting previously unselected package r-cran-generics.
934s Preparing to unpack .../209-r-cran-generics_0.1.3-1_all.deb ...
934s Unpacking r-cran-generics (0.1.3-1) ...
934s Selecting previously unselected package r-cran-magrittr.
934s Preparing to unpack .../210-r-cran-magrittr_2.0.3-1_ppc64el.deb ...
934s Unpacking r-cran-magrittr (2.0.3-1) ...
934s Selecting previously unselected package r-cran-fansi.
934s Preparing to unpack .../211-r-cran-fansi_1.0.5-1_ppc64el.deb ...
934s Unpacking r-cran-fansi (1.0.5-1) ...
934s Selecting previously unselected package r-cran-utf8.
934s Preparing to unpack .../212-r-cran-utf8_1.2.4-1_ppc64el.deb ...
934s Unpacking r-cran-utf8 (1.2.4-1) ...
934s Selecting previously unselected package r-cran-pillar.
934s Preparing to unpack .../213-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
934s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
934s Selecting previously unselected package r-cran-pkgconfig.
934s Preparing to unpack .../214-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
934s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
934s Selecting previously unselected package r-cran-tibble.
934s Preparing to unpack .../215-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ...
934s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
934s Selecting previously unselected package r-cran-tidyselect.
934s Preparing to unpack .../216-r-cran-tidyselect_1.2.0+dfsg-1_ppc64el.deb ...
934s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
934s Selecting previously unselected package r-cran-dplyr.
934s Preparing to unpack .../217-r-cran-dplyr_1.1.4-1_ppc64el.deb ...
934s Unpacking r-cran-dplyr (1.1.4-1) ...
935s Selecting previously unselected package r-cran-evaluate.
935s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ...
935s Unpacking r-cran-evaluate (0.23-1) ...
935s Selecting previously unselected package r-cran-farver.
935s Preparing to unpack .../219-r-cran-farver_2.1.1-2_ppc64el.deb ...
935s Unpacking r-cran-farver (2.1.1-2) ...
935s Selecting previously unselected package r-cran-fontawesome.
935s Preparing to unpack .../220-r-cran-fontawesome_0.5.2-1_all.deb ...
935s Unpacking r-cran-fontawesome (0.5.2-1) ...
935s Selecting previously unselected package r-cran-gtable.
935s Preparing to unpack .../221-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
935s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
935s Selecting previously unselected package r-cran-isoband.
935s Preparing to unpack .../222-r-cran-isoband_0.2.7-1_ppc64el.deb ...
935s Unpacking r-cran-isoband (0.2.7-1) ...
935s Selecting previously unselected package r-cran-lattice.
935s Preparing to unpack .../223-r-cran-lattice_0.22-6-1_ppc64el.deb ...
935s Unpacking r-cran-lattice (0.22-6-1) ...
935s Selecting previously unselected package r-cran-nlme.
935s Preparing to unpack .../224-r-cran-nlme_3.1.164-1build1_ppc64el.deb ...
935s Unpacking r-cran-nlme (3.1.164-1build1) ...
935s Selecting previously unselected package r-cran-matrix.
935s Preparing to unpack .../225-r-cran-matrix_1.6-5-1_ppc64el.deb ...
935s Unpacking r-cran-matrix (1.6-5-1) ...
935s Selecting previously unselected package r-cran-mgcv.
935s Preparing to unpack .../226-r-cran-mgcv_1.9-1-1_ppc64el.deb ...
935s Unpacking r-cran-mgcv (1.9-1-1) ...
936s Selecting previously unselected package r-cran-labeling.
936s Preparing to unpack .../227-r-cran-labeling_0.4.3-1_all.deb ...
936s Unpacking r-cran-labeling (0.4.3-1) ...
936s Selecting previously unselected package r-cran-munsell.
936s Preparing to unpack .../228-r-cran-munsell_0.5.0-2build1_all.deb ...
936s Unpacking r-cran-munsell (0.5.0-2build1) ...
936s Selecting previously unselected package r-cran-rcolorbrewer.
936s Preparing to unpack .../229-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
936s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
936s Selecting previously unselected package r-cran-viridislite.
936s Preparing to unpack .../230-r-cran-viridislite_0.4.2-2_all.deb ...
936s Unpacking r-cran-viridislite (0.4.2-2) ...
936s Selecting previously unselected package r-cran-scales.
936s Preparing to unpack .../231-r-cran-scales_1.3.0-1_all.deb ...
936s Unpacking r-cran-scales (1.3.0-1) ...
936s Selecting previously unselected package r-cran-ggplot2.
936s Preparing to unpack .../232-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
936s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
936s Selecting previously unselected package r-cran-goftest.
936s Preparing to unpack .../233-r-cran-goftest_1.2-3-1_ppc64el.deb ...
936s Unpacking r-cran-goftest (1.2-3-1) ...
936s Selecting previously unselected package r-cran-xfun.
936s Preparing to unpack .../234-r-cran-xfun_0.44+dfsg-1_ppc64el.deb ...
936s Unpacking r-cran-xfun (0.44+dfsg-1) ...
936s Selecting previously unselected package r-cran-highr.
936s Preparing to unpack .../235-r-cran-highr_0.10+dfsg-2_all.deb ...
936s Unpacking r-cran-highr (0.10+dfsg-2) ...
936s Selecting previously unselected package r-cran-pkgkitten.
936s Preparing to unpack .../236-r-cran-pkgkitten_0.2.3-1_all.deb ...
936s Unpacking r-cran-pkgkitten (0.2.3-1) ...
936s Selecting previously unselected package r-cran-rcpp.
936s Preparing to unpack .../237-r-cran-rcpp_1.0.12-1_ppc64el.deb ...
936s Unpacking r-cran-rcpp (1.0.12-1) ...
937s Selecting previously unselected package r-cran-later.
937s Preparing to unpack .../238-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ...
937s Unpacking r-cran-later (1.3.2+dfsg-1) ...
937s Selecting previously unselected package r-cran-promises.
937s Preparing to unpack .../239-r-cran-promises_1.3.0+dfsg-1_ppc64el.deb ...
937s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
937s Selecting previously unselected package r-cran-httpuv.
937s Preparing to unpack .../240-r-cran-httpuv_1.6.15+dfsg-1_ppc64el.deb ...
937s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
937s Selecting previously unselected package libjs-mathjax.
937s Preparing to unpack .../241-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
937s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
940s Selecting previously unselected package r-cran-knitr.
940s Preparing to unpack .../242-r-cran-knitr_1.46+dfsg-1_all.deb ...
940s Unpacking r-cran-knitr (1.46+dfsg-1) ...
940s Selecting previously unselected package r-cran-units.
940s Preparing to unpack .../243-r-cran-units_0.8-5+dfsg-1_ppc64el.deb ...
940s Unpacking r-cran-units (0.8-5+dfsg-1) ...
940s Selecting previously unselected package r-cran-wk.
940s Preparing to unpack .../244-r-cran-wk_0.9.1-1_ppc64el.deb ...
940s Unpacking r-cran-wk (0.9.1-1) ...
940s Selecting previously unselected package r-cran-s2.
940s Preparing to unpack .../245-r-cran-s2_1.1.6-1build2_ppc64el.deb ...
940s Unpacking r-cran-s2 (1.1.6-1build2) ...
940s Selecting previously unselected package r-cran-sf.
940s Preparing to unpack .../246-r-cran-sf_1.0-16+dfsg-1_ppc64el.deb ...
940s Unpacking r-cran-sf (1.0-16+dfsg-1) ...
940s Selecting previously unselected package r-cran-lwgeom.
940s Preparing to unpack .../247-r-cran-lwgeom_0.2-13-3build2_ppc64el.deb ...
940s Unpacking r-cran-lwgeom (0.2-13-3build2) ...
940s Selecting previously unselected package r-cran-maps.
940s Preparing to unpack .../248-r-cran-maps_3.4.2-1_ppc64el.deb ...
940s Unpacking r-cran-maps (3.4.2-1) ...
941s Selecting previously unselected package r-cran-pbapply.
941s Preparing to unpack .../249-r-cran-pbapply_1.7-2-1_all.deb ...
941s Unpacking r-cran-pbapply (1.7-2-1) ...
941s Selecting previously unselected package r-cran-pkgbuild.
941s Preparing to unpack .../250-r-cran-pkgbuild_1.4.3-1_all.deb ...
941s Unpacking r-cran-pkgbuild (1.4.3-1) ...
941s Selecting previously unselected package r-cran-rprojroot.
941s Preparing to unpack .../251-r-cran-rprojroot_2.0.4-1_all.deb ...
941s Unpacking r-cran-rprojroot (2.0.4-1) ...
941s Selecting previously unselected package r-cran-pkgload.
941s Preparing to unpack .../252-r-cran-pkgload_1.3.4-1_all.deb ...
941s Unpacking r-cran-pkgload (1.3.4-1) ...
941s Selecting previously unselected package r-cran-plogr.
941s Preparing to unpack .../253-r-cran-plogr_0.2.0-3build1_all.deb ...
941s Unpacking r-cran-plogr (0.2.0-3build1) ...
941s Selecting previously unselected package r-cran-polyclip.
941s Preparing to unpack .../254-r-cran-polyclip_1.10-6-1_ppc64el.deb ...
941s Unpacking r-cran-polyclip (1.10-6-1) ...
941s Selecting previously unselected package r-cran-praise.
941s Preparing to unpack .../255-r-cran-praise_1.0.0-4build1_all.deb ...
941s Unpacking r-cran-praise (1.0.0-4build1) ...
941s Selecting previously unselected package r-cran-purrr.
941s Preparing to unpack .../256-r-cran-purrr_1.0.2-1_ppc64el.deb ...
941s Unpacking r-cran-purrr (1.0.2-1) ...
941s Selecting previously unselected package r-cran-sp.
941s Preparing to unpack .../257-r-cran-sp_1%3a2.1-2+dfsg-1_ppc64el.deb ...
941s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ...
941s Selecting previously unselected package r-cran-terra.
941s Preparing to unpack .../258-r-cran-terra_1.7-65-1build2_ppc64el.deb ...
941s Unpacking r-cran-terra (1.7-65-1build2) ...
942s Selecting previously unselected package r-cran-raster.
942s Preparing to unpack .../259-r-cran-raster_3.6-26-1_ppc64el.deb ...
942s Unpacking r-cran-raster (3.6-26-1) ...
942s Selecting previously unselected package r-cran-rematch2.
942s Preparing to unpack .../260-r-cran-rematch2_2.1.2-2build1_all.deb ...
942s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
942s Selecting previously unselected package r-cran-stringi.
942s Preparing to unpack .../261-r-cran-stringi_1.8.3-1_ppc64el.deb ...
942s Unpacking r-cran-stringi (1.8.3-1) ...
942s Selecting previously unselected package r-cran-stringr.
942s Preparing to unpack .../262-r-cran-stringr_1.5.1-1_all.deb ...
942s Unpacking r-cran-stringr (1.5.1-1) ...
942s Selecting previously unselected package r-cran-tinytex.
942s Preparing to unpack .../263-r-cran-tinytex_0.49-1_all.deb ...
942s Unpacking r-cran-tinytex (0.49-1) ...
942s Selecting previously unselected package libjs-modernizr.
942s Preparing to unpack .../264-libjs-modernizr_3.13.0-0.1_all.deb ...
942s Unpacking libjs-modernizr (3.13.0-0.1) ...
942s Selecting previously unselected package r-cran-xtable.
942s Preparing to unpack .../265-r-cran-xtable_1%3a1.8-4-2_all.deb ...
942s Unpacking r-cran-xtable (1:1.8-4-2) ...
942s Selecting previously unselected package r-cran-sourcetools.
942s Preparing to unpack .../266-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ...
942s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
942s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
942s Preparing to unpack .../267-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
942s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
942s Selecting previously unselected package r-cran-shiny.
942s Preparing to unpack .../268-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ...
942s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ...
943s Selecting previously unselected package r-cran-rmarkdown.
943s Preparing to unpack .../269-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
943s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
943s Selecting previously unselected package r-cran-survival.
943s Preparing to unpack .../270-r-cran-survival_3.5-8-1_ppc64el.deb ...
943s Unpacking r-cran-survival (3.5-8-1) ...
943s Selecting previously unselected package r-cran-rpart.
943s Preparing to unpack .../271-r-cran-rpart_4.1.23-1build1_ppc64el.deb ...
943s Unpacking r-cran-rpart (4.1.23-1build1) ...
943s Selecting previously unselected package r-cran-rpostgresql.
943s Preparing to unpack .../272-r-cran-rpostgresql_0.7-6+dfsg-1_ppc64el.deb ...
943s Unpacking r-cran-rpostgresql (0.7-6+dfsg-1) ...
943s Selecting previously unselected package r-cran-rsqlite.
943s Preparing to unpack .../273-r-cran-rsqlite_2.3.4-1_ppc64el.deb ...
943s Unpacking r-cran-rsqlite (2.3.4-1) ...
943s Selecting previously unselected package r-cran-spatstat.utils.
943s Preparing to unpack .../274-r-cran-spatstat.utils_3.0-4-1_ppc64el.deb ...
943s Unpacking r-cran-spatstat.utils (3.0-4-1) ...
943s Selecting previously unselected package r-cran-spatstat.data.
943s Preparing to unpack .../275-r-cran-spatstat.data_3.0-4-1_all.deb ...
943s Unpacking r-cran-spatstat.data (3.0-4-1) ...
944s Selecting previously unselected package r-cran-spatstat.geom.
944s Preparing to unpack .../276-r-cran-spatstat.geom_3.2-9-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat.geom (3.2-9-1) ...
944s Selecting previously unselected package r-cran-spatstat.random.
944s Preparing to unpack .../277-r-cran-spatstat.random_3.2-3-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat.random (3.2-3-1) ...
944s Selecting previously unselected package r-cran-tensor.
944s Preparing to unpack .../278-r-cran-tensor_1.5-4_all.deb ...
944s Unpacking r-cran-tensor (1.5-4) ...
944s Selecting previously unselected package r-cran-spatstat.sparse.
944s Preparing to unpack .../279-r-cran-spatstat.sparse_3.0-3-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat.sparse (3.0-3-1) ...
944s Selecting previously unselected package r-cran-spatstat.explore.
944s Preparing to unpack .../280-r-cran-spatstat.explore_3.2-5-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat.explore (3.2-5-1) ...
944s Selecting previously unselected package r-cran-spatstat.model.
944s Preparing to unpack .../281-r-cran-spatstat.model_3.2-11-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat.model (3.2-11-1) ...
944s Selecting previously unselected package r-cran-spatstat.linnet.
944s Preparing to unpack .../282-r-cran-spatstat.linnet_3.1-5-1_ppc64el.deb ...
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944s Selecting previously unselected package r-cran-spatstat.
944s Preparing to unpack .../283-r-cran-spatstat_3.0-7-1_ppc64el.deb ...
944s Unpacking r-cran-spatstat (3.0-7-1) ...
944s Selecting previously unselected package r-cran-stars.
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944s Unpacking r-cran-stars (0.6-4-1) ...
944s Selecting previously unselected package r-cran-waldo.
945s Preparing to unpack .../285-r-cran-waldo_0.5.2-1build1_all.deb ...
945s Unpacking r-cran-waldo (0.5.2-1build1) ...
945s Selecting previously unselected package r-cran-testthat.
945s Preparing to unpack .../286-r-cran-testthat_3.2.1-1_ppc64el.deb ...
945s Unpacking r-cran-testthat (3.2.1-1) ...
945s Selecting previously unselected package r-cran-tidyr.
945s Preparing to unpack .../287-r-cran-tidyr_1.3.1-1_ppc64el.deb ...
945s Unpacking r-cran-tidyr (1.3.1-1) ...
945s Selecting previously unselected package autopkgtest-satdep.
945s Preparing to unpack .../288-2-autopkgtest-satdep.deb ...
945s Unpacking autopkgtest-satdep (0) ...
945s Setting up libjs-json (0~20221030+~1.0.8-1) ...
945s Setting up javascript-common (11+nmu1) ...
945s Setting up libgraphite2-3:ppc64el (1.3.14-2build1) ...
945s Setting up liblcms2-2:ppc64el (2.14-2build1) ...
945s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ...
945s Setting up libpaper1:ppc64el (1.1.29build1) ...
945s 
945s Creating config file /etc/papersize with new version
946s Setting up mysql-common (5.8+1.1.0build1) ...
946s update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode
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948s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu2) ...
948s Setting up libmysqlclient21:ppc64el (8.0.37-1) ...
948s Setting up libncurses-dev:ppc64el (6.4+20240113-1ubuntu2) ...
948s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
948s Setting up proj-data (9.4.0-1build2) ...
948s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
948s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
948s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
948s Setting up libproj25:ppc64el (9.4.0-1build2) ...
948s Setting up libjs-popper.js (1.16.1+ds-6) ...
948s Setting up libogdi4.1:ppc64el (4.1.1+ds-4) ...
948s Setting up libxcb-render0:ppc64el (1.17.0-2) ...
948s Setting up libgeos3.12.1t64:ppc64el (3.12.1-3build1) ...
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948s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
948s Setting up libgeos-c1t64:ppc64el (3.12.1-3build1) ...
948s Setting up unzip (6.0-28ubuntu4) ...
948s Setting up x11-common (1:7.7+23ubuntu3) ...
950s Setting up node-html5shiv (3.7.3+dfsg-5) ...
950s Setting up libpq5:ppc64el (16.2-1ubuntu4) ...
950s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ...
950s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ...
950s Setting up libxcb-shm0:ppc64el (1.17.0-2) ...
950s Setting up libpaper-utils (1.1.29build1) ...
950s Setting up libreadline-dev:ppc64el (8.2-4build1) ...
950s Setting up libxerces-c3.2t64:ppc64el (3.2.4+debian-1.3) ...
950s Setting up libgomp1:ppc64el (14.1.0-1ubuntu1) ...
950s Setting up libjs-modernizr (3.13.0-0.1) ...
950s Setting up libcairo2:ppc64el (1.18.0-3build1) ...
950s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu2) ...
950s Setting up libaec0:ppc64el (1.1.3-1) ...
950s Setting up gdal-data (3.8.5+dfsg-1) ...
950s Setting up libgeotiff5:ppc64el (1.7.1-5build1) ...
950s Setting up libsnappy1v5:ppc64el (1.2.1-1) ...
950s Setting up libjs-es5-shim (4.6.7-2) ...
950s Setting up zip (3.0-13build1) ...
950s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu2) ...
950s Setting up libblas3:ppc64el (3.12.0-3build1) ...
950s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
950s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1.3) ...
950s Setting up libpkgconf3:ppc64el (1.8.1-2build1) ...
950s Setting up gcc-13-base:ppc64el (13.2.0-23ubuntu4) ...
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950s Setting up libquadmath0:ppc64el (14.1.0-1ubuntu1) ...
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950s Setting up libmpc3:ppc64el (1.3.1-1build1) ...
950s Setting up libatomic1:ppc64el (14.1.0-1ubuntu1) ...
950s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ...
950s Setting up icu-devtools (74.2-1ubuntu3) ...
950s Setting up unixodbc-common (2.3.12-1build2) ...
950s Setting up pkgconf-bin (1.8.1-2build1) ...
950s Setting up libltdl7:ppc64el (2.4.7-7build1) ...
950s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ...
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951s Setting up libpangocairo-1.0-0:ppc64el (1.52.2+ds-1) ...
951s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ...
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951s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
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951s Setting up r-base-core (4.4.0-2) ...
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951s Creating config file /etc/R/Renviron with new version
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952s Setting up r-cran-labeling (0.4.3-1) ...
952s Setting up r-cran-sourcetools (0.1.7-1-1) ...
952s Setting up r-cran-lattice (0.22-6-1) ...
952s Setting up r-cran-ps (1.7.6-1) ...
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952s Setting up r-cran-pbapply (1.7-2-1) ...
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952s Setting up r-cran-viridislite (0.4.2-2) ...
952s Setting up r-cran-tensor (1.5-4) ...
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952s Setting up r-cran-wk (0.9.1-1) ...
952s Setting up r-cran-commonmark (1.9.1-1) ...
952s Setting up r-cran-proxy (0.4-27-1) ...
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952s Setting up r-cran-pkgkitten (0.2.3-1) ...
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952s Setting up r-cran-rappdirs (0.3.3-1) ...
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952s Setting up r-cran-littler (0.3.20-1) ...
952s Setting up r-cran-fs (1.6.3+dfsg-1build2) ...
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952s Setting up r-cran-curl (5.2.0+dfsg-1build2) ...
952s Setting up g++-13 (13.2.0-23ubuntu4) ...
952s Setting up r-cran-brio (1.1.5-1) ...
952s Setting up r-cran-diffobj (0.3.5-1) ...
952s Setting up r-cran-maps (3.4.2-1) ...
952s Setting up r-cran-rlang (1.1.3-1) ...
952s Setting up littler (0.3.20-1) ...
952s Setting up r-cran-xfun (0.44+dfsg-1) ...
952s Setting up r-cran-sys (3.4.2-1) ...
952s Setting up r-cran-plogr (0.2.0-3build1) ...
952s Setting up r-cran-withr (2.5.0-1) ...
952s Setting up r-cran-processx (3.8.3-1) ...
952s Setting up r-cran-mime (0.12-2) ...
952s Setting up r-cran-praise (1.0.0-4build1) ...
952s Setting up r-cran-generics (0.1.3-1) ...
952s Setting up r-cran-base64enc (0.1-3-3) ...
952s Setting up r-cran-abind (1.4-5-2) ...
952s Setting up r-cran-s2 (1.1.6-1build2) ...
952s Setting up r-cran-digest (0.6.35-1) ...
952s Setting up r-cran-yaml (2.3.8-2) ...
952s Setting up r-cran-evaluate (0.23-1) ...
952s Setting up r-cran-dbi (1.2.2-1) ...
952s Setting up r-cran-highr (0.10+dfsg-2) ...
952s Setting up r-cran-fansi (1.0.5-1) ...
952s Setting up r-cran-mass (7.3-60.2-1) ...
952s Setting up r-cran-glue (1.7.0-1) ...
952s Setting up r-cran-bit (4.0.5-1) ...
952s Setting up r-cran-xtable (1:1.8-4-2) ...
952s Setting up r-cran-polyclip (1.10-6-1) ...
952s Setting up r-cran-cli (3.6.2-1) ...
952s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
952s Setting up r-cran-rprojroot (2.0.4-1) ...
952s Setting up r-cran-bit64 (4.0.5-1) ...
952s Setting up gcc (4:13.2.0-7ubuntu1) ...
952s Setting up r-cran-deldir (2.0-4-1build1) ...
952s Setting up r-cran-goftest (1.2-3-1) ...
952s Setting up r-cran-askpass (1.2.0-1) ...
952s Setting up r-cran-fastmap (1.1.1-1) ...
952s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
952s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
952s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
952s Setting up r-cran-utf8 (1.2.4-1) ...
952s Setting up gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
952s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
952s Setting up r-cran-stringi (1.8.3-1) ...
952s Setting up r-cran-rex (1.2.1-1) ...
952s Setting up r-cran-cpp11 (0.4.7-1) ...
952s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
952s Setting up r-cran-isoband (0.2.7-1) ...
952s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
952s Setting up r-cran-terra (1.7-65-1build2) ...
952s Setting up r-cran-units (0.8-5+dfsg-1) ...
952s Setting up r-cran-later (1.3.2+dfsg-1) ...
952s Setting up r-cran-matrix (1.6-5-1) ...
952s Setting up r-cran-spatstat.sparse (3.0-3-1) ...
952s Setting up r-cran-htmltools (0.5.8.1-1) ...
952s Setting up r-cran-tinytex (0.49-1) ...
952s Setting up r-cran-kernsmooth (2.23-24-1) ...
952s Setting up r-cran-knitr (1.46+dfsg-1) ...
952s Setting up r-cran-mgcv (1.9-1-1) ...
952s Setting up g++ (4:13.2.0-7ubuntu1) ...
952s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
952s Setting up r-cran-rpostgresql (0.7-6+dfsg-1) ...
952s Setting up r-cran-cachem (1.0.8-1) ...
952s Setting up r-cran-sass (0.4.9+dfsg-1) ...
952s Setting up build-essential (12.10ubuntu1) ...
952s Setting up r-cran-vctrs (0.6.5-1) ...
952s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
952s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ...
952s Setting up r-cran-stringr (1.5.1-1) ...
952s Setting up r-cran-class (7.3-22-2build1) ...
952s Setting up r-cran-callr (3.7.6-1) ...
952s Setting up r-cran-desc (1.4.3-1) ...
952s Setting up r-cran-munsell (0.5.0-2build1) ...
952s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
952s Setting up r-cran-fontawesome (0.5.2-1) ...
952s Setting up r-cran-survival (3.5-8-1) ...
952s Setting up gfortran (4:13.2.0-7ubuntu1) ...
952s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
952s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
952s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
952s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
952s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
952s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
952s Setting up r-cran-raster (3.6-26-1) ...
952s Setting up r-cran-httr (1.4.7+dfsg-1) ...
952s Setting up r-cran-scales (1.3.0-1) ...
952s Setting up r-cran-memoise (2.0.1-1) ...
952s Setting up r-cran-covr (3.6.4+dfsg-1) ...
952s Setting up r-cran-promises (1.3.0+dfsg-1) ...
952s Setting up r-cran-purrr (1.0.2-1) ...
952s Setting up r-cran-e1071 (1.7-14-1) ...
952s Setting up r-cran-spatstat.data (3.0-4-1) ...
952s Setting up r-cran-blob (1.2.4-1) ...
952s Setting up r-cran-spatstat.geom (3.2-9-1) ...
952s Setting up r-cran-pkgbuild (1.4.3-1) ...
952s Setting up r-cran-dplyr (1.1.4-1) ...
952s Setting up r-cran-rsqlite (2.3.4-1) ...
952s Setting up r-cran-pkgload (1.3.4-1) ...
952s Setting up r-base-dev (4.4.0-2) ...
952s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
952s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
952s Setting up r-cran-rematch2 (2.1.2-2build1) ...
952s Setting up r-cran-rpart (4.1.23-1build1) ...
952s Setting up r-cran-spatstat.random (3.2-3-1) ...
952s Setting up r-cran-classint (0.4-10+dfsg-1) ...
952s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
952s Setting up r-cran-spatstat.explore (3.2-5-1) ...
952s Setting up r-cran-waldo (0.5.2-1build1) ...
952s Setting up r-cran-tidyr (1.3.1-1) ...
952s Setting up r-cran-sf (1.0-16+dfsg-1) ...
952s Setting up r-cran-stars (0.6-4-1) ...
952s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
952s Setting up r-cran-spatstat.model (3.2-11-1) ...
952s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ...
952s Setting up r-cran-testthat (3.2.1-1) ...
952s Setting up r-cran-lwgeom (0.2-13-3build2) ...
952s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
952s Setting up r-cran-spatstat.linnet (3.1-5-1) ...
952s Setting up r-cran-spatstat (3.0-7-1) ...
952s Setting up autopkgtest-satdep (0) ...
952s Processing triggers for man-db (2.12.1-1) ...
957s Processing triggers for install-info (7.1-3build2) ...
957s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
986s (Reading database ... 95940 files and directories currently installed.)
986s Removing autopkgtest-satdep (0) ...
988s autopkgtest [09:43:15]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
988s autopkgtest [09:43:15]: test pkg-r-autopkgtest: [-----------------------
988s Test: Try to load the R library sf
989s 
989s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
989s Copyright (C) 2024 The R Foundation for Statistical Computing
989s Platform: powerpc64le-unknown-linux-gnu
989s 
989s R is free software and comes with ABSOLUTELY NO WARRANTY.
989s You are welcome to redistribute it under certain conditions.
989s Type 'license()' or 'licence()' for distribution details.
989s 
989s R is a collaborative project with many contributors.
989s Type 'contributors()' for more information and
989s 'citation()' on how to cite R or R packages in publications.
989s 
989s Type 'demo()' for some demos, 'help()' for on-line help, or
989s 'help.start()' for an HTML browser interface to help.
989s Type 'q()' to quit R.
989s 
989s > library('sf')
991s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE
991s > 
991s > 
991s Other tests are currently unsupported!
991s They will be progressively added.
992s autopkgtest [09:43:19]: test pkg-r-autopkgtest: -----------------------]
992s autopkgtest [09:43:19]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
992s pkg-r-autopkgtest    PASS
993s autopkgtest [09:43:20]: @@@@@@@@@@@@@@@@@@@@ summary
993s run-unit-test        PASS
993s pkg-r-autopkgtest    PASS
1004s flock: timeout while waiting to get lock
1004s Creating nova instance adt-oracular-ppc64el-r-cran-sf-20240524-092646-juju-7f2275-prod-proposed-migration-environment-2-e5fe2ea9-3a61-466c-820b-16d8b5765967 from image adt/ubuntu-oracular-ppc64el-server-20240509.img (UUID 1c85ce1c-4944-4b4e-a1c6-2159ec573517)...
1004s flock: timeout while waiting to get lock
1004s Creating nova instance adt-oracular-ppc64el-r-cran-sf-20240524-092646-juju-7f2275-prod-proposed-migration-environment-2-e5fe2ea9-3a61-466c-820b-16d8b5765967 from image adt/ubuntu-oracular-ppc64el-server-20240509.img (UUID 1c85ce1c-4944-4b4e-a1c6-2159ec573517)...