0s autopkgtest [01:15:46]: starting date and time: 2024-06-29 01:15:46+0000 0s autopkgtest [01:15:46]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [01:15:46]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.41cg9z3x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-22.secgroup --name adt-oracular-ppc64el-python-skbio-20240629-011546-juju-7f2275-prod-proposed-migration-environment-3-2e41a07f-ddb1-4ff6-b8a6-f23314886e9d --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 159s autopkgtest [01:18:25]: testbed dpkg architecture: ppc64el 160s autopkgtest [01:18:26]: testbed apt version: 2.9.5 160s autopkgtest [01:18:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 161s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 161s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [55.3 kB] 161s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 161s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [384 kB] 161s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 161s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [92.7 kB] 161s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 161s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [391 kB] 161s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1768 B] 161s Fetched 1046 kB in 1s (1226 kB/s) 161s Reading package lists... 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s Calculating upgrade... 164s The following packages will be upgraded: 164s base-files libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 164s motd-news-config 164s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Need to get 10.2 MB of archives. 164s After this operation, 1841 kB disk space will be freed. 164s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el motd-news-config all 13.3ubuntu2 [5416 B] 164s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-devtools ppc64el 2.39-3.1ubuntu2 [29.5 kB] 164s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6-dev ppc64el 2.39-3.1ubuntu2 [1982 kB] 165s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-dev-bin ppc64el 2.39-3.1ubuntu2 [21.0 kB] 165s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el base-files ppc64el 13.3ubuntu2 [75.5 kB] 165s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6 ppc64el 2.39-3.1ubuntu2 [3173 kB] 165s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-bin ppc64el 2.39-3.1ubuntu2 [720 kB] 165s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el locales all 2.39-3.1ubuntu2 [4220 kB] 166s Preconfiguring packages ... 166s Fetched 10.2 MB in 2s (6606 kB/s) 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72697 files and directories currently installed.) 166s Preparing to unpack .../motd-news-config_13.3ubuntu2_all.deb ... 166s Unpacking motd-news-config (13.3ubuntu2) over (13.1ubuntu1) ... 166s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu2_ppc64el.deb ... 166s Unpacking libc-devtools (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 166s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu2_ppc64el.deb ... 166s Unpacking libc6-dev:ppc64el (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 166s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu2_ppc64el.deb ... 166s Unpacking libc-dev-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 166s Preparing to unpack .../base-files_13.3ubuntu2_ppc64el.deb ... 167s Unpacking base-files (13.3ubuntu2) over (13.1ubuntu1) ... 167s Setting up base-files (13.3ubuntu2) ... 167s Updating /etc/profile to current default. 167s motd-news.service is a disabled or a static unit not running, not starting it. 168s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72700 files and directories currently installed.) 168s Preparing to unpack .../libc6_2.39-3.1ubuntu2_ppc64el.deb ... 168s Unpacking libc6:ppc64el (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 168s Setting up libc6:ppc64el (2.39-3.1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72700 files and directories currently installed.) 169s Preparing to unpack .../libc-bin_2.39-3.1ubuntu2_ppc64el.deb ... 169s Unpacking libc-bin (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 169s Setting up libc-bin (2.39-3.1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72700 files and directories currently installed.) 169s Preparing to unpack .../locales_2.39-3.1ubuntu2_all.deb ... 169s Unpacking locales (2.39-3.1ubuntu2) over (2.39-0ubuntu9) ... 169s Setting up motd-news-config (13.3ubuntu2) ... 169s Setting up locales (2.39-3.1ubuntu2) ... 169s Generating locales (this might take a while)... 171s en_US.UTF-8... done 171s Generation complete. 171s Setting up libc-dev-bin (2.39-3.1ubuntu2) ... 171s Setting up libc-devtools (2.39-3.1ubuntu2) ... 171s Setting up libc6-dev:ppc64el (2.39-3.1ubuntu2) ... 171s Processing triggers for man-db (2.12.1-2) ... 172s Processing triggers for plymouth-theme-ubuntu-text (24.004.60-1ubuntu7) ... 172s update-initramfs: deferring update (trigger activated) 172s Processing triggers for install-info (7.1-3build2) ... 172s Processing triggers for initramfs-tools (0.142ubuntu28) ... 172s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 172s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 180s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 180s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 180s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 181s Reading package lists... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Calculating upgrade... 181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 182s autopkgtest [01:18:48]: rebooting testbed after setup commands that affected boot 186s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 219s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 236s autopkgtest [01:19:42]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 239s autopkgtest [01:19:45]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 242s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (dsc) [2803 B] 242s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (tar) [3559 kB] 242s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (diff) [15.7 kB] 242s gpgv: Signature made Wed Apr 10 15:30:06 2024 UTC 242s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 242s gpgv: Can't check signature: No public key 242s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4build1.dsc: no acceptable signature found 242s autopkgtest [01:19:48]: testing package python-skbio version 0.5.9-4build1 242s autopkgtest [01:19:48]: build not needed 244s autopkgtest [01:19:50]: test import-skbio: preparing testbed 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 245s Starting pkgProblemResolver with broken count: 0 245s Starting 2 pkgProblemResolver with broken count: 0 245s Done 245s The following additional packages will be installed: 245s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 245s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjs-jquery 245s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 245s libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 libtk8.6 libwebpdemux2 245s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 245s python3-appdirs python3-asttokens python3-brotli python3-contourpy 245s python3-cycler python3-dateutil python3-decorator python3-executing 245s python3-fonttools python3-fs python3-h5py python3-h5py-serial 245s python3-hdmedians python3-iniconfig python3-ipython python3-jedi 245s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 245s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 245s python3-packaging python3-pandas python3-pandas-lib python3-parso 245s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 245s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 245s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 245s python3-traitlets python3-typeshed python3-ufolib2 python3-unicodedata2 245s python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 245s Suggested packages: 245s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 245s python-h5py-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 245s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 245s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 245s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 245s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc 245s gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 245s python-pexpect-doc python-pil-doc python-scipy-doc python-skbio-doc 245s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 245s Recommended packages: 245s javascript-common python3-bs4 python3-cssselect python3-html5lib 245s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 245s python3-tables python3-olefile g++ | c++-compiler isympy-common 246s The following NEW packages will be installed: 246s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 246s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 246s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 246s liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 246s libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 246s python-matplotlib-data python3-appdirs python3-asttokens python3-brotli 246s python3-contourpy python3-cycler python3-dateutil python3-decorator 246s python3-executing python3-fonttools python3-fs python3-h5py 246s python3-h5py-serial python3-hdmedians python3-iniconfig python3-ipython 246s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 246s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 246s python3-packaging python3-pandas python3-pandas-lib python3-parso 246s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 246s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 246s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 246s python3-traitlets python3-typeshed python3-ufolib2 python3-unicodedata2 246s python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 246s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 246s Need to get 73.3 MB/73.3 MB of archives. 246s After this operation, 347 MB of additional disk space will be used. 246s Get:1 /tmp/autopkgtest.hAetVw/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 246s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 246s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 246s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 246s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 246s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 246s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 246s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 246s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 246s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-lyx all 2.4.0-1 [171 kB] 246s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 246s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 246s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 246s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB] 247s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 247s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 247s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 247s Get:18 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu4 [1395 kB] 247s Get:19 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu4 [70.9 kB] 247s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 247s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 247s Get:22 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 247s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 247s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 247s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 247s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 247s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 247s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 247s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libssw0 ppc64el 1.1-14build1 [24.5 kB] 247s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 247s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 247s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 247s Get:33 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 247s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 247s Get:35 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-asttokens all 2.4.1-1 [20.9 kB] 247s Get:36 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 247s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 248s Get:38 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-contourpy ppc64el 1.0.7-3 [200 kB] 248s Get:39 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 248s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 248s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 248s Get:42 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-executing all 2.0.1-0.1 [23.3 kB] 248s Get:43 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-scipy ppc64el 1.12.0-2 [18.0 MB] 248s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 248s Get:45 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 248s Get:46 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sympy all 1.12-8 [3966 kB] 248s Get:47 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 248s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 248s Get:49 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 248s Get:50 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 248s Get:51 http://ftpmaster.internal/ubuntu oracular/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 249s Get:52 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 249s Get:53 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu3 [955 kB] 249s Get:54 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py all 3.10.0-1ubuntu3 [7978 B] 249s Get:55 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1build1 [147 kB] 249s Get:56 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 249s Get:57 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 249s Get:58 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 249s Get:59 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 249s Get:60 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-traitlets all 5.5.0-2 [85.0 kB] 249s Get:61 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 249s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-ptyprocess all 0.7.0-5 [15.1 kB] 249s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 249s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 249s Get:65 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-prompt-toolkit all 3.0.47-1 [256 kB] 249s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pure-eval all 0.2.2-2 [11.1 kB] 249s Get:67 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 249s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ipython all 8.20.0-1ubuntu1 [561 kB] 249s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-kiwisolver ppc64el 1.4.5-1 [55.5 kB] 249s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB] 249s Get:71 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pil ppc64el 10.3.0-2 [491 kB] 249s Get:72 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tk ppc64el 3.12.3-0ubuntu1 [105 kB] 249s Get:73 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pil.imagetk ppc64el 10.3.0-2 [9572 B] 249s Get:74 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 249s Get:75 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib ppc64el 3.6.3-2ubuntu1 [6175 kB] 249s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 249s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-8 [4587 kB] 249s Get:78 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas all 2.1.4+dfsg-8 [3042 kB] 249s Get:79 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 249s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 249s Get:81 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-skbio ppc64el 0.5.9-4build1 [789 kB] 250s Fetched 73.3 MB in 4s (18.6 MB/s) 250s Selecting previously unselected package libtcl8.6:ppc64el. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72700 files and directories currently installed.) 250s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 250s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 250s Selecting previously unselected package libxrender1:ppc64el. 250s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 250s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 250s Selecting previously unselected package libxft2:ppc64el. 250s Preparing to unpack .../02-libxft2_2.3.6-1build1_ppc64el.deb ... 250s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 250s Selecting previously unselected package x11-common. 250s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 250s Unpacking x11-common (1:7.7+23ubuntu3) ... 250s Selecting previously unselected package libxss1:ppc64el. 250s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 250s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 250s Selecting previously unselected package libtk8.6:ppc64el. 250s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_ppc64el.deb ... 250s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 250s Selecting previously unselected package tk8.6-blt2.5. 250s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 250s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 250s Selecting previously unselected package blt. 250s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 250s Unpacking blt (2.5.3+dfsg-7build1) ... 250s Selecting previously unselected package fonts-lyx. 250s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 250s Unpacking fonts-lyx (2.4.0-1) ... 250s Selecting previously unselected package libaec0:ppc64el. 250s Preparing to unpack .../09-libaec0_1.1.3-1_ppc64el.deb ... 250s Unpacking libaec0:ppc64el (1.1.3-1) ... 250s Selecting previously unselected package libblas3:ppc64el. 250s Preparing to unpack .../10-libblas3_3.12.0-3build1_ppc64el.deb ... 250s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 250s Selecting previously unselected package libgfortran5:ppc64el. 250s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 250s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 250s Selecting previously unselected package libgomp1:ppc64el. 250s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ... 250s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ... 250s Selecting previously unselected package libgraphite2-3:ppc64el. 250s Preparing to unpack .../13-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 250s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 250s Selecting previously unselected package libharfbuzz0b:ppc64el. 250s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 250s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 250s Selecting previously unselected package libsz2:ppc64el. 250s Preparing to unpack .../15-libsz2_1.1.3-1_ppc64el.deb ... 250s Unpacking libsz2:ppc64el (1.1.3-1) ... 250s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 250s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 250s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 250s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 250s Preparing to unpack .../17-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 250s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 250s Selecting previously unselected package libimagequant0:ppc64el. 250s Preparing to unpack .../18-libimagequant0_2.18.0-1build1_ppc64el.deb ... 250s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 250s Selecting previously unselected package libjs-jquery. 250s Preparing to unpack .../19-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 250s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 250s Selecting previously unselected package libjs-jquery-ui. 250s Preparing to unpack .../20-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 251s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 251s Selecting previously unselected package liblapack3:ppc64el. 251s Preparing to unpack .../21-liblapack3_3.12.0-3build1_ppc64el.deb ... 251s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 251s Selecting previously unselected package liblbfgsb0:ppc64el. 251s Preparing to unpack .../22-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 251s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 251s Selecting previously unselected package liblcms2-2:ppc64el. 251s Preparing to unpack .../23-liblcms2-2_2.14-2build1_ppc64el.deb ... 251s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 251s Selecting previously unselected package liblzf1:ppc64el. 251s Preparing to unpack .../24-liblzf1_3.6-4_ppc64el.deb ... 251s Unpacking liblzf1:ppc64el (3.6-4) ... 251s Selecting previously unselected package libqhull-r8.0:ppc64el. 251s Preparing to unpack .../25-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 251s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 251s Selecting previously unselected package libraqm0:ppc64el. 251s Preparing to unpack .../26-libraqm0_0.10.1-1build1_ppc64el.deb ... 251s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 251s Selecting previously unselected package libssw0:ppc64el. 251s Preparing to unpack .../27-libssw0_1.1-14build1_ppc64el.deb ... 251s Unpacking libssw0:ppc64el (1.1-14build1) ... 251s Selecting previously unselected package libwebpdemux2:ppc64el. 251s Preparing to unpack .../28-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 251s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 251s Selecting previously unselected package libwebpmux3:ppc64el. 251s Preparing to unpack .../29-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 251s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 251s Selecting previously unselected package libxslt1.1:ppc64el. 251s Preparing to unpack .../30-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 251s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 251s Selecting previously unselected package python-matplotlib-data. 251s Preparing to unpack .../31-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 251s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 251s Selecting previously unselected package python3-appdirs. 251s Preparing to unpack .../32-python3-appdirs_1.4.4-4_all.deb ... 251s Unpacking python3-appdirs (1.4.4-4) ... 251s Selecting previously unselected package python3-asttokens. 251s Preparing to unpack .../33-python3-asttokens_2.4.1-1_all.deb ... 251s Unpacking python3-asttokens (2.4.1-1) ... 251s Selecting previously unselected package python3-brotli. 251s Preparing to unpack .../34-python3-brotli_1.1.0-2build2_ppc64el.deb ... 251s Unpacking python3-brotli (1.1.0-2build2) ... 251s Selecting previously unselected package python3-numpy. 251s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 251s Unpacking python3-numpy (1:1.26.4+ds-10) ... 251s Selecting previously unselected package python3-contourpy. 251s Preparing to unpack .../36-python3-contourpy_1.0.7-3_ppc64el.deb ... 251s Unpacking python3-contourpy (1.0.7-3) ... 251s Selecting previously unselected package python3-cycler. 251s Preparing to unpack .../37-python3-cycler_0.12.1-1_all.deb ... 251s Unpacking python3-cycler (0.12.1-1) ... 251s Selecting previously unselected package python3-dateutil. 251s Preparing to unpack .../38-python3-dateutil_2.9.0-2_all.deb ... 251s Unpacking python3-dateutil (2.9.0-2) ... 251s Selecting previously unselected package python3-decorator. 251s Preparing to unpack .../39-python3-decorator_5.1.1-5_all.deb ... 251s Unpacking python3-decorator (5.1.1-5) ... 251s Selecting previously unselected package python3-executing. 251s Preparing to unpack .../40-python3-executing_2.0.1-0.1_all.deb ... 251s Unpacking python3-executing (2.0.1-0.1) ... 251s Selecting previously unselected package python3-scipy. 251s Preparing to unpack .../41-python3-scipy_1.12.0-2_ppc64el.deb ... 251s Unpacking python3-scipy (1.12.0-2) ... 252s Selecting previously unselected package python3-ufolib2. 252s Preparing to unpack .../42-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 252s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 252s Selecting previously unselected package python3-mpmath. 252s Preparing to unpack .../43-python3-mpmath_1.3.0-1_all.deb ... 252s Unpacking python3-mpmath (1.3.0-1) ... 252s Selecting previously unselected package python3-sympy. 252s Preparing to unpack .../44-python3-sympy_1.12-8_all.deb ... 252s Unpacking python3-sympy (1.12-8) ... 252s Selecting previously unselected package python3-fs. 252s Preparing to unpack .../45-python3-fs_2.4.16-4_all.deb ... 252s Unpacking python3-fs (2.4.16-4) ... 252s Selecting previously unselected package python3-lxml:ppc64el. 252s Preparing to unpack .../46-python3-lxml_5.2.1-1_ppc64el.deb ... 252s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 253s Selecting previously unselected package python3-lz4. 253s Preparing to unpack .../47-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 253s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 253s Selecting previously unselected package python3-unicodedata2. 253s Preparing to unpack .../48-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 253s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 253s Selecting previously unselected package unicode-data. 253s Preparing to unpack .../49-unicode-data_15.1.0-1_all.deb ... 253s Unpacking unicode-data (15.1.0-1) ... 253s Selecting previously unselected package python3-fonttools. 253s Preparing to unpack .../50-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 253s Unpacking python3-fonttools (4.46.0-1build2) ... 253s Selecting previously unselected package python3-h5py-serial. 253s Preparing to unpack .../51-python3-h5py-serial_3.10.0-1ubuntu3_ppc64el.deb ... 253s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 253s Selecting previously unselected package python3-h5py. 253s Preparing to unpack .../52-python3-h5py_3.10.0-1ubuntu3_all.deb ... 253s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 253s Selecting previously unselected package python3-hdmedians. 253s Preparing to unpack .../53-python3-hdmedians_0.14.2-5.1build1_ppc64el.deb ... 253s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 253s Selecting previously unselected package python3-iniconfig. 253s Preparing to unpack .../54-python3-iniconfig_1.1.1-2_all.deb ... 253s Unpacking python3-iniconfig (1.1.1-2) ... 253s Selecting previously unselected package python3-parso. 253s Preparing to unpack .../55-python3-parso_0.8.3-1_all.deb ... 253s Unpacking python3-parso (0.8.3-1) ... 253s Selecting previously unselected package python3-typeshed. 253s Preparing to unpack .../56-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 253s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 254s Selecting previously unselected package python3-jedi. 254s Preparing to unpack .../57-python3-jedi_0.19.1+ds1-1_all.deb ... 254s Unpacking python3-jedi (0.19.1+ds1-1) ... 254s Selecting previously unselected package python3-traitlets. 254s Preparing to unpack .../58-python3-traitlets_5.5.0-2_all.deb ... 254s Unpacking python3-traitlets (5.5.0-2) ... 254s Selecting previously unselected package python3-matplotlib-inline. 254s Preparing to unpack .../59-python3-matplotlib-inline_0.1.6-2_all.deb ... 254s Unpacking python3-matplotlib-inline (0.1.6-2) ... 254s Selecting previously unselected package python3-ptyprocess. 254s Preparing to unpack .../60-python3-ptyprocess_0.7.0-5_all.deb ... 254s Unpacking python3-ptyprocess (0.7.0-5) ... 254s Selecting previously unselected package python3-pexpect. 254s Preparing to unpack .../61-python3-pexpect_4.9-2_all.deb ... 254s Unpacking python3-pexpect (4.9-2) ... 254s Selecting previously unselected package python3-wcwidth. 254s Preparing to unpack .../62-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 254s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 254s Selecting previously unselected package python3-prompt-toolkit. 254s Preparing to unpack .../63-python3-prompt-toolkit_3.0.47-1_all.deb ... 254s Unpacking python3-prompt-toolkit (3.0.47-1) ... 254s Selecting previously unselected package python3-pure-eval. 254s Preparing to unpack .../64-python3-pure-eval_0.2.2-2_all.deb ... 254s Unpacking python3-pure-eval (0.2.2-2) ... 254s Selecting previously unselected package python3-stack-data. 254s Preparing to unpack .../65-python3-stack-data_0.6.3-1_all.deb ... 254s Unpacking python3-stack-data (0.6.3-1) ... 254s Selecting previously unselected package python3-ipython. 254s Preparing to unpack .../66-python3-ipython_8.20.0-1ubuntu1_all.deb ... 254s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 254s Selecting previously unselected package python3-kiwisolver. 254s Preparing to unpack .../67-python3-kiwisolver_1.4.5-1_ppc64el.deb ... 254s Unpacking python3-kiwisolver (1.4.5-1) ... 254s Selecting previously unselected package libopenjp2-7:ppc64el. 254s Preparing to unpack .../68-libopenjp2-7_2.5.0-2build3_ppc64el.deb ... 254s Unpacking libopenjp2-7:ppc64el (2.5.0-2build3) ... 254s Selecting previously unselected package python3-pil:ppc64el. 254s Preparing to unpack .../69-python3-pil_10.3.0-2_ppc64el.deb ... 254s Unpacking python3-pil:ppc64el (10.3.0-2) ... 255s Selecting previously unselected package python3-tk:ppc64el. 255s Preparing to unpack .../70-python3-tk_3.12.3-0ubuntu1_ppc64el.deb ... 255s Unpacking python3-tk:ppc64el (3.12.3-0ubuntu1) ... 255s Selecting previously unselected package python3-pil.imagetk:ppc64el. 255s Preparing to unpack .../71-python3-pil.imagetk_10.3.0-2_ppc64el.deb ... 255s Unpacking python3-pil.imagetk:ppc64el (10.3.0-2) ... 255s Selecting previously unselected package python3-packaging. 255s Preparing to unpack .../72-python3-packaging_24.0-1_all.deb ... 255s Unpacking python3-packaging (24.0-1) ... 255s Selecting previously unselected package python3-matplotlib. 255s Preparing to unpack .../73-python3-matplotlib_3.6.3-2ubuntu1_ppc64el.deb ... 255s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 255s Selecting previously unselected package python3-natsort. 255s Preparing to unpack .../74-python3-natsort_8.0.2-2_all.deb ... 255s Unpacking python3-natsort (8.0.2-2) ... 255s Selecting previously unselected package python3-pandas-lib:ppc64el. 255s Preparing to unpack .../75-python3-pandas-lib_2.1.4+dfsg-8_ppc64el.deb ... 255s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 255s Selecting previously unselected package python3-pandas. 255s Preparing to unpack .../76-python3-pandas_2.1.4+dfsg-8_all.deb ... 255s Unpacking python3-pandas (2.1.4+dfsg-8) ... 255s Selecting previously unselected package python3-pluggy. 255s Preparing to unpack .../77-python3-pluggy_1.5.0-1_all.deb ... 255s Unpacking python3-pluggy (1.5.0-1) ... 255s Selecting previously unselected package python3-pytest. 255s Preparing to unpack .../78-python3-pytest_7.4.4-1_all.deb ... 255s Unpacking python3-pytest (7.4.4-1) ... 255s Selecting previously unselected package python3-skbio. 255s Preparing to unpack .../79-python3-skbio_0.5.9-4build1_ppc64el.deb ... 255s Unpacking python3-skbio (0.5.9-4build1) ... 256s Selecting previously unselected package autopkgtest-satdep. 256s Preparing to unpack .../80-1-autopkgtest-satdep.deb ... 256s Unpacking autopkgtest-satdep (0) ... 256s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 256s Setting up liblcms2-2:ppc64el (2.14-2build1) ... 256s Setting up 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- - - - - - - - - - 297s autopkgtest [01:20:43]: test testsuite: preparing testbed 299s Reading package lists... 299s Building dependency tree... 299s Reading state information... 299s Starting pkgProblemResolver with broken count: 0 299s Starting 2 pkgProblemResolver with broken count: 0 299s Done 299s The following NEW packages will be installed: 299s autopkgtest-satdep 299s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 299s Need to get 0 B/716 B of archives. 299s After this operation, 0 B of additional disk space will be used. 299s Get:1 /tmp/autopkgtest.hAetVw/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 299s Selecting previously unselected package autopkgtest-satdep. 300s (Reading database ... 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Note that the correlation/,/After permuting host : parasite interactions, we find that the observed/d {} ; 302s + find . -name power.py -exec sed -i /Now, let's use random sampling to estimate the power of our test on/,/Based on this power estimate, as we increase our confidence that we have not/d {} ; 302s + http_proxy=http://127.0.0.1:9 python3 -m pytest --pyargs skbio 306s ============================= test session starts ============================== 306s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 306s rootdir: /tmp/autopkgtest.hAetVw/autopkgtest_tmp 306s collected 2390 items 306s 307s skbio/alignment/tests/test_pairwise.py ......................... [ 1%] 307s skbio/alignment/tests/test_ssw.py ........................... [ 2%] 307s skbio/alignment/tests/test_tabular_msa.py .............................. [ 3%] 307s ........................................................................ 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[ 93%] 363s skbio/tree/tests/test_nj.py ........... [ 93%] 363s skbio/tree/tests/test_tree.py .......................................... [ 95%] 364s ................................................... [ 97%] 364s skbio/util/tests/test_decorator.py ....................... [ 98%] 364s skbio/util/tests/test_misc.py .................... [ 99%] 364s skbio/util/tests/test_testing.py ............... [100%] 364s 364s =============================== warnings summary =============================== 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_kwargs_are_usable 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_DNA 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_Protein 364s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_type_mismatch 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: local_pairwise_align_ssw is deprecated as of scikit-bio version 0.5.8, and will be removed in version 0.6.0. This will be removed or replaced, in favor of more general-purpose performant aligners. Additional details at https://github.com/biocore/scikit-bio/issues/1814 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 364s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_constructor_makes_shallow_copy_of_positional_metadata 364s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/metadata/_testing.py:445: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 364s df['bar'][0].append(42) 364s 364s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 364s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_positional_metadata_setter_makes_shallow_copy 364s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/metadata/_testing.py:823: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 364s df['bar'][0].append(42) 364s 364s skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in divide 364s gap_freqs /= length 364s 364s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: invalid value encountered in scalar divide 364s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 364s 364s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/diversity/alpha/_base.py:887: RuntimeWarning: invalid value encountered in divide 364s freqs = counts / counts.sum() 364s 364s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: divide by zero encountered in log 364s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 364s 364s skbio/diversity/tests/test_block.py: 3 warnings 364s skbio/diversity/tests/test_driver.py: 9 warnings 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 364s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 364s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/sequence/_sequence.py:1820: RuntimeWarning: invalid value encountered in divide 364s obs_counts = obs_counts / len(self) 364s 364s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/distance/_mantel.py:354: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 364s warnings.warn(ConstantInputWarning()) 364s 364s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/distance/_mantel.py:473: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 364s warnings.warn(ConstantInputWarning()) 364s 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 364s warn( 364s 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 364s warn( 364s 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in divide 364s proportion_explained = eigvals / sum_eigenvalues 364s 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/distance/_permdisp.py:290: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 364s stat, _ = f_oneway(*groups) 364s 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 364s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00775832514778062 and the largest is 2.7077929489469246. 364s warn( 364s 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_no_metadata 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_numeric_metadata_and_plot_options 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_png 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_png 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_svg 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_svg 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:285: UserWarning: Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations. 364s fig.tight_layout() 364s 364s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:263: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored 364s plot = scatter_fn(c=point_colors, cmap=cmap) 364s 364s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 364s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 364s return self.run(*args, **kwds) 364s 364s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAResults_biplot_score::test_biplot_score 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/ordination/tests/test_redundancy_analysis.py:248: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 364s scaling = (rda_.eigvals[0] / rda_.eigvals[:6]) 364s 364s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 364s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:531: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 364s res = hypotest_fun_out(*samples, **kwds) 364s 364s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/composition.py:1589: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 364s return significance_test(*[x[cats == k] for k in cs]) 364s 364s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/composition.py:982: RuntimeWarning: divide by zero encountered in log 364s X_log = np.log(mat) 364s 364s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 364s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 364s X -= avg[:, None] 364s 364s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/composition.py:837: RuntimeWarning: divide by zero encountered in log 364s x = np.log(x) 364s 364s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 364s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 364s x = asanyarray(arr - arrmean) 364s 364s skbio/stats/tests/test_gradient.py: 13 warnings 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/gradient.py:168: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 364s np.abs((w_vector[i] - w_vector[i-1])) 364s 364s skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/gradient.py:166: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 364s trajectories.loc[idx] = ( 364s 364s skbio/stats/tests/test_power.py: 27 warnings 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/stats/power.py:1122: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 364s pwr[id2] = _calculate_power(ps, a) 364s 364s skbio/util/tests/test_decorator.py::TestDeprecated::test_function_output 364s /tmp/autopkgtest.hAetVw/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). 364s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 364s 364s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 364s = 2350 passed, 30 skipped, 8 xfailed, 2 xpassed, 119 warnings in 61.34s (0:01:01) = 364s autopkgtest [01:21:50]: test testsuite: -----------------------] 365s testsuite PASS 365s autopkgtest [01:21:51]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 365s autopkgtest [01:21:51]: @@@@@@@@@@@@@@@@@@@@ summary 365s import-skbio PASS 365s testsuite PASS 379s nova [W] Using flock in scalingstack-bos01-ppc64el 379s Creating nova instance adt-oracular-ppc64el-python-skbio-20240629-011546-juju-7f2275-prod-proposed-migration-environment-3-2e41a07f-ddb1-4ff6-b8a6-f23314886e9d from image adt/ubuntu-oracular-ppc64el-server-20240628.img (UUID 2e55b484-56fd-4001-b1bd-dd90b413b7c5)...