0s autopkgtest [19:33:10]: starting date and time: 2024-06-27 19:33:10+0000 0s autopkgtest [19:33:10]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [19:33:10]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.sd6jzr94/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:requests --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=requests/2.32.3+dfsg-1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-4.secgroup --name adt-oracular-ppc64el-python-skbio-20240627-193310-juju-7f2275-prod-proposed-migration-environment-2-1265330d-5192-4b48-8724-be2c977209f2 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 143s autopkgtest [19:35:33]: testbed dpkg architecture: ppc64el 143s autopkgtest [19:35:33]: testbed apt version: 2.9.5 143s autopkgtest [19:35:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 145s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 145s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [387 kB] 145s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.1 kB] 145s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 145s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 145s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [78.3 kB] 145s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 145s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [392 kB] 145s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1768 B] 145s Fetched 1033 kB in 1s (1088 kB/s) 145s Reading package lists... 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade... 149s The following packages will be upgraded: 149s binutils binutils-common binutils-powerpc64le-linux-gnu btrfs-progs 149s cloud-init libbinutils libctf-nobfd0 libctf0 libsframe1 lsb-release 149s openssh-client openssh-server openssh-sftp-server python3-requests tmux 149s vim-common vim-tiny xxd 149s 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 9529 kB of archives. 149s After this operation, 297 kB disk space will be freed. 149s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu14 [43.5 kB] 149s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu14 [624 kB] 149s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu14 [1108 kB] 150s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el lsb-release all 12.1-1 [5910 B] 150s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-tiny ppc64el 2:9.1.0496-1ubuntu2 [1046 kB] 150s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el vim-common all 2:9.1.0496-1ubuntu2 [387 kB] 150s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el xxd ppc64el 2:9.1.0496-1ubuntu2 [64.3 kB] 150s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf0 ppc64el 2.42.50.20240625-1ubuntu1 [113 kB] 150s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf-nobfd0 ppc64el 2.42.50.20240625-1ubuntu1 [114 kB] 150s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42.50.20240625-1ubuntu1 [2492 kB] 150s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbinutils ppc64el 2.42.50.20240625-1ubuntu1 [702 kB] 150s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils ppc64el 2.42.50.20240625-1ubuntu1 [3096 B] 150s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-common ppc64el 2.42.50.20240625-1ubuntu1 [221 kB] 150s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsframe1 ppc64el 2.42.50.20240625-1ubuntu1 [16.0 kB] 150s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el btrfs-progs ppc64el 6.6.3-1.2 [1336 kB] 151s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el python3-requests all 2.32.3+dfsg-1ubuntu1 [52.6 kB] 151s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el tmux ppc64el 3.4-7 [601 kB] 151s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el cloud-init all 24.2~5g8c396a4b-0ubuntu1 [599 kB] 151s Preconfiguring packages ... 151s Fetched 9529 kB in 2s (4624 kB/s) 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72687 files and directories currently installed.) 151s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu14_ppc64el.deb ... 151s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu14) over (1:9.6p1-3ubuntu13) ... 151s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu14_ppc64el.deb ... 151s Unpacking openssh-server (1:9.6p1-3ubuntu14) over (1:9.6p1-3ubuntu13) ... 151s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu14_ppc64el.deb ... 151s Unpacking openssh-client (1:9.6p1-3ubuntu14) over (1:9.6p1-3ubuntu13) ... 152s Preparing to unpack .../03-lsb-release_12.1-1_all.deb ... 152s Unpacking lsb-release (12.1-1) over (12.0-2) ... 152s Preparing to unpack .../04-vim-tiny_2%3a9.1.0496-1ubuntu2_ppc64el.deb ... 152s Unpacking vim-tiny (2:9.1.0496-1ubuntu2) over (2:9.1.0377-1ubuntu1) ... 152s Preparing to unpack .../05-vim-common_2%3a9.1.0496-1ubuntu2_all.deb ... 152s Unpacking vim-common (2:9.1.0496-1ubuntu2) over (2:9.1.0377-1ubuntu1) ... 152s Preparing to unpack .../06-xxd_2%3a9.1.0496-1ubuntu2_ppc64el.deb ... 152s Unpacking xxd (2:9.1.0496-1ubuntu2) over (2:9.1.0377-1ubuntu1) ... 152s Preparing to unpack .../07-libctf0_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking libctf0:ppc64el (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../08-libctf-nobfd0_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking libctf-nobfd0:ppc64el (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../09-binutils-powerpc64le-linux-gnu_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking binutils-powerpc64le-linux-gnu (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../10-libbinutils_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking libbinutils:ppc64el (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../11-binutils_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking binutils (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../12-binutils-common_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking binutils-common:ppc64el (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../13-libsframe1_2.42.50.20240625-1ubuntu1_ppc64el.deb ... 152s Unpacking libsframe1:ppc64el (2.42.50.20240625-1ubuntu1) over (2.42.50.20240618-1ubuntu1) ... 152s Preparing to unpack .../14-btrfs-progs_6.6.3-1.2_ppc64el.deb ... 152s Unpacking btrfs-progs (6.6.3-1.2) over (6.6.3-1.1build2) ... 152s Preparing to unpack .../15-python3-requests_2.32.3+dfsg-1ubuntu1_all.deb ... 152s Unpacking python3-requests (2.32.3+dfsg-1ubuntu1) over (2.31.0+dfsg-1ubuntu3) ... 152s Preparing to unpack .../16-tmux_3.4-7_ppc64el.deb ... 152s Unpacking tmux (3.4-7) over (3.4-6) ... 152s Preparing to unpack .../17-cloud-init_24.2~5g8c396a4b-0ubuntu1_all.deb ... 152s Unpacking cloud-init (24.2~5g8c396a4b-0ubuntu1) over (24.2~4g5f40426f-0ubuntu1) ... 153s Setting up openssh-client (1:9.6p1-3ubuntu14) ... 153s Setting up btrfs-progs (6.6.3-1.2) ... 153s Setting up binutils-common:ppc64el (2.42.50.20240625-1ubuntu1) ... 153s Setting up libctf-nobfd0:ppc64el (2.42.50.20240625-1ubuntu1) ... 153s Setting up xxd (2:9.1.0496-1ubuntu2) ... 153s Setting up libsframe1:ppc64el (2.42.50.20240625-1ubuntu1) ... 153s Setting up vim-common (2:9.1.0496-1ubuntu2) ... 153s Setting up python3-requests (2.32.3+dfsg-1ubuntu1) ... 153s Setting up libbinutils:ppc64el (2.42.50.20240625-1ubuntu1) ... 153s Setting up lsb-release (12.1-1) ... 153s Setting up tmux (3.4-7) ... 153s Setting up libctf0:ppc64el (2.42.50.20240625-1ubuntu1) ... 153s Setting up openssh-sftp-server (1:9.6p1-3ubuntu14) ... 153s Setting up cloud-init (24.2~5g8c396a4b-0ubuntu1) ... 153s Installing new version of config file /etc/cloud/cloud.cfg ... 155s Setting up openssh-server (1:9.6p1-3ubuntu14) ... 155s Replacing config file /etc/ssh/sshd_config with new version 156s Setting up vim-tiny (2:9.1.0496-1ubuntu2) ... 156s Setting up binutils-powerpc64le-linux-gnu (2.42.50.20240625-1ubuntu1) ... 156s Setting up binutils (2.42.50.20240625-1ubuntu1) ... 156s Processing triggers for debianutils (5.19) ... 156s Processing triggers for initramfs-tools (0.142ubuntu28) ... 156s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 156s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 163s Processing triggers for libc-bin (2.39-0ubuntu9) ... 163s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ... 164s Processing triggers for ufw (0.36.2-6) ... 164s Processing triggers for man-db (2.12.1-2) ... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 166s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 166s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 166s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 167s Reading package lists... 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s Calculating upgrade... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s autopkgtest [19:35:59]: rebooting testbed after setup commands that affected boot 203s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 216s autopkgtest [19:36:46]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 219s autopkgtest [19:36:49]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 222s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (dsc) [2803 B] 222s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (tar) [3559 kB] 222s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (diff) [15.7 kB] 223s gpgv: Signature made Wed Apr 10 15:30:06 2024 UTC 223s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 223s gpgv: Can't check signature: No public key 223s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4build1.dsc: no acceptable signature found 223s autopkgtest [19:36:53]: testing package python-skbio version 0.5.9-4build1 223s autopkgtest [19:36:53]: build not needed 224s autopkgtest [19:36:54]: test import-skbio: preparing testbed 226s Reading package lists... 226s Building dependency tree... 226s Reading state information... 226s Starting pkgProblemResolver with broken count: 0 226s Starting 2 pkgProblemResolver with broken count: 0 226s Done 226s The following additional packages will be installed: 226s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 226s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjs-jquery 226s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 226s libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 libtk8.6 libwebpdemux2 226s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 226s python3-appdirs python3-asttokens python3-brotli python3-contourpy 226s python3-cycler python3-dateutil python3-decorator python3-executing 226s python3-fonttools python3-fs python3-h5py python3-h5py-serial 226s python3-hdmedians python3-iniconfig python3-ipython python3-jedi 226s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 226s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 226s python3-packaging python3-pandas python3-pandas-lib python3-parso 226s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 226s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 226s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 226s python3-traitlets python3-typeshed python3-tz python3-ufolib2 226s python3-unicodedata2 python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 226s Suggested packages: 226s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 226s python-h5py-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 226s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 226s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 226s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 226s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc 226s gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 226s python-pexpect-doc python-pil-doc python-scipy-doc python-skbio-doc 226s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 226s Recommended packages: 226s javascript-common python3-bs4 python3-cssselect python3-html5lib 226s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 226s python3-tables python3-olefile g++ | c++-compiler isympy-common 226s The following NEW packages will be installed: 226s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 226s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 226s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 226s liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 226s libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 226s python-matplotlib-data python3-appdirs python3-asttokens python3-brotli 226s python3-contourpy python3-cycler python3-dateutil python3-decorator 226s python3-executing python3-fonttools python3-fs python3-h5py 226s python3-h5py-serial python3-hdmedians python3-iniconfig python3-ipython 226s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 226s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 226s python3-packaging python3-pandas python3-pandas-lib python3-parso 226s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 226s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 226s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 226s python3-traitlets python3-typeshed python3-tz python3-ufolib2 226s python3-unicodedata2 python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 226s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. 226s Need to get 73.3 MB/73.3 MB of archives. 226s After this operation, 347 MB of additional disk space will be used. 226s Get:1 /tmp/autopkgtest.jfRsan/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 227s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 227s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 227s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 227s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 227s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 227s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 227s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 227s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 227s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-lyx all 2.4.0-1 [171 kB] 227s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 227s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 227s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 228s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB] 228s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 228s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 228s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 228s Get:18 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu4 [1395 kB] 228s Get:19 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu4 [70.9 kB] 228s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 228s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 228s Get:22 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 228s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 228s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 228s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 228s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 228s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 228s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 228s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libssw0 ppc64el 1.1-14build1 [24.5 kB] 228s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 228s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 228s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 228s Get:33 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 228s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 228s Get:35 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-asttokens all 2.4.1-1 [20.9 kB] 228s Get:36 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 228s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 229s Get:38 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-contourpy ppc64el 1.0.7-3 [200 kB] 229s Get:39 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 229s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 229s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 229s Get:42 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-executing all 2.0.1-0.1 [23.3 kB] 229s Get:43 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-scipy ppc64el 1.12.0-2 [18.0 MB] 230s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 230s Get:45 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 230s Get:46 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sympy all 1.12-8 [3966 kB] 230s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 230s Get:48 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 230s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 230s Get:50 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 230s Get:51 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 230s Get:52 http://ftpmaster.internal/ubuntu oracular/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 230s Get:53 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 230s Get:54 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu3 [955 kB] 230s Get:55 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py all 3.10.0-1ubuntu3 [7978 B] 230s Get:56 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1build1 [147 kB] 230s Get:57 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 230s Get:58 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 230s Get:59 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 230s Get:60 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 230s Get:61 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-traitlets all 5.5.0-2 [85.0 kB] 230s Get:62 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 230s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-ptyprocess all 0.7.0-5 [15.1 kB] 230s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 230s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 230s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-prompt-toolkit all 3.0.47-1 [256 kB] 230s Get:67 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pure-eval all 0.2.2-2 [11.1 kB] 230s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 230s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ipython all 8.20.0-1ubuntu1 [561 kB] 230s Get:70 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-kiwisolver ppc64el 1.4.5-1 [55.5 kB] 230s Get:71 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB] 230s Get:72 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pil ppc64el 10.3.0-2 [491 kB] 230s Get:73 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tk ppc64el 3.12.3-0ubuntu1 [105 kB] 230s Get:74 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pil.imagetk ppc64el 10.3.0-2 [9572 B] 230s Get:75 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 230s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib ppc64el 3.6.3-2ubuntu1 [6175 kB] 231s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 231s Get:78 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-8 [4587 kB] 231s Get:79 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas all 2.1.4+dfsg-8 [3042 kB] 231s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 231s Get:81 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 231s Get:82 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-skbio ppc64el 0.5.9-4build1 [789 kB] 231s Fetched 73.3 MB in 5s (15.9 MB/s) 231s Selecting previously unselected package libtcl8.6:ppc64el. 232s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72686 files and directories currently installed.) 232s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 232s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 232s Selecting previously unselected package libxrender1:ppc64el. 232s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 232s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 232s Selecting previously unselected package libxft2:ppc64el. 232s Preparing to unpack .../02-libxft2_2.3.6-1build1_ppc64el.deb ... 232s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 232s Selecting previously unselected package x11-common. 232s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 232s Unpacking x11-common (1:7.7+23ubuntu3) ... 232s Selecting previously unselected package libxss1:ppc64el. 232s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 232s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 232s Selecting previously unselected package libtk8.6:ppc64el. 232s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_ppc64el.deb ... 232s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 232s Selecting previously unselected package tk8.6-blt2.5. 232s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 232s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 232s Selecting previously unselected package blt. 232s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 232s Unpacking blt (2.5.3+dfsg-7build1) ... 232s Selecting previously unselected package fonts-lyx. 232s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 232s Unpacking fonts-lyx (2.4.0-1) ... 232s Selecting previously unselected package libaec0:ppc64el. 232s Preparing to unpack .../09-libaec0_1.1.3-1_ppc64el.deb ... 232s Unpacking libaec0:ppc64el (1.1.3-1) ... 232s Selecting previously unselected package libblas3:ppc64el. 232s Preparing to unpack .../10-libblas3_3.12.0-3build1_ppc64el.deb ... 232s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 232s Selecting previously unselected package libgfortran5:ppc64el. 232s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 232s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 232s Selecting previously unselected package libgomp1:ppc64el. 232s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ... 232s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ... 232s Selecting previously unselected package libgraphite2-3:ppc64el. 232s Preparing to unpack .../13-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 232s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 232s Selecting previously unselected package libharfbuzz0b:ppc64el. 232s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 232s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 232s Selecting previously unselected package libsz2:ppc64el. 232s Preparing to unpack .../15-libsz2_1.1.3-1_ppc64el.deb ... 232s Unpacking libsz2:ppc64el (1.1.3-1) ... 232s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 232s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 232s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 232s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 232s Preparing to unpack .../17-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 232s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 232s Selecting previously unselected package libimagequant0:ppc64el. 232s Preparing to unpack .../18-libimagequant0_2.18.0-1build1_ppc64el.deb ... 232s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 232s Selecting previously unselected package libjs-jquery. 232s Preparing to unpack .../19-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 232s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 232s Selecting previously unselected package libjs-jquery-ui. 232s Preparing to unpack .../20-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 232s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 232s Selecting previously unselected package liblapack3:ppc64el. 232s Preparing to unpack .../21-liblapack3_3.12.0-3build1_ppc64el.deb ... 232s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 232s Selecting previously unselected package liblbfgsb0:ppc64el. 232s Preparing to unpack .../22-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 232s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 232s Selecting previously unselected package liblcms2-2:ppc64el. 232s Preparing to unpack .../23-liblcms2-2_2.14-2build1_ppc64el.deb ... 232s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 233s Selecting previously unselected package liblzf1:ppc64el. 233s Preparing to unpack .../24-liblzf1_3.6-4_ppc64el.deb ... 233s Unpacking liblzf1:ppc64el (3.6-4) ... 233s Selecting previously unselected package libqhull-r8.0:ppc64el. 233s Preparing to unpack .../25-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 233s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 233s Selecting previously unselected package libraqm0:ppc64el. 233s Preparing to unpack .../26-libraqm0_0.10.1-1build1_ppc64el.deb ... 233s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 233s Selecting previously unselected package libssw0:ppc64el. 233s Preparing to unpack .../27-libssw0_1.1-14build1_ppc64el.deb ... 233s Unpacking libssw0:ppc64el (1.1-14build1) ... 233s Selecting previously unselected package libwebpdemux2:ppc64el. 233s Preparing to unpack .../28-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 233s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 233s Selecting previously unselected package libwebpmux3:ppc64el. 233s Preparing to unpack .../29-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 233s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 233s Selecting previously unselected package libxslt1.1:ppc64el. 233s Preparing to unpack .../30-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 233s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 233s Selecting previously unselected package python-matplotlib-data. 233s Preparing to unpack .../31-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 233s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 233s Selecting previously unselected package python3-appdirs. 233s Preparing to unpack .../32-python3-appdirs_1.4.4-4_all.deb ... 233s Unpacking python3-appdirs (1.4.4-4) ... 233s Selecting previously unselected package python3-asttokens. 233s Preparing to unpack .../33-python3-asttokens_2.4.1-1_all.deb ... 233s Unpacking python3-asttokens (2.4.1-1) ... 233s Selecting previously unselected package python3-brotli. 233s Preparing to unpack .../34-python3-brotli_1.1.0-2build2_ppc64el.deb ... 233s Unpacking python3-brotli (1.1.0-2build2) ... 233s Selecting previously unselected package python3-numpy. 233s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 233s Unpacking python3-numpy (1:1.26.4+ds-10) ... 233s Selecting previously unselected package python3-contourpy. 233s Preparing to unpack .../36-python3-contourpy_1.0.7-3_ppc64el.deb ... 233s Unpacking python3-contourpy (1.0.7-3) ... 233s Selecting previously unselected package python3-cycler. 233s Preparing to unpack .../37-python3-cycler_0.12.1-1_all.deb ... 233s Unpacking python3-cycler (0.12.1-1) ... 233s Selecting previously unselected package python3-dateutil. 233s Preparing to unpack .../38-python3-dateutil_2.9.0-2_all.deb ... 233s Unpacking python3-dateutil (2.9.0-2) ... 233s Selecting previously unselected package python3-decorator. 233s Preparing to unpack .../39-python3-decorator_5.1.1-5_all.deb ... 233s Unpacking python3-decorator (5.1.1-5) ... 233s Selecting previously unselected package python3-executing. 233s Preparing to unpack .../40-python3-executing_2.0.1-0.1_all.deb ... 233s Unpacking python3-executing (2.0.1-0.1) ... 233s Selecting previously unselected package python3-scipy. 233s Preparing to unpack .../41-python3-scipy_1.12.0-2_ppc64el.deb ... 233s Unpacking python3-scipy (1.12.0-2) ... 234s Selecting previously unselected package python3-ufolib2. 234s Preparing to unpack .../42-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 234s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 234s Selecting previously unselected package python3-mpmath. 234s Preparing to unpack .../43-python3-mpmath_1.3.0-1_all.deb ... 234s Unpacking python3-mpmath (1.3.0-1) ... 234s Selecting previously unselected package python3-sympy. 234s Preparing to unpack .../44-python3-sympy_1.12-8_all.deb ... 234s Unpacking python3-sympy (1.12-8) ... 234s Selecting previously unselected package python3-tz. 234s Preparing to unpack .../45-python3-tz_2024.1-2_all.deb ... 234s Unpacking python3-tz (2024.1-2) ... 234s Selecting previously unselected package python3-fs. 234s Preparing to unpack .../46-python3-fs_2.4.16-4_all.deb ... 234s Unpacking python3-fs (2.4.16-4) ... 234s Selecting previously unselected package python3-lxml:ppc64el. 234s Preparing to unpack .../47-python3-lxml_5.2.1-1_ppc64el.deb ... 234s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 234s Selecting previously unselected package python3-lz4. 234s Preparing to unpack .../48-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 234s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 235s Selecting previously unselected package python3-unicodedata2. 235s Preparing to unpack .../49-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 235s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 235s Selecting previously unselected package unicode-data. 235s Preparing to unpack .../50-unicode-data_15.1.0-1_all.deb ... 235s Unpacking unicode-data (15.1.0-1) ... 235s Selecting previously unselected package python3-fonttools. 235s Preparing to unpack .../51-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 235s Unpacking python3-fonttools (4.46.0-1build2) ... 235s Selecting previously unselected package python3-h5py-serial. 235s Preparing to unpack .../52-python3-h5py-serial_3.10.0-1ubuntu3_ppc64el.deb ... 235s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 235s Selecting previously unselected package python3-h5py. 235s Preparing to unpack .../53-python3-h5py_3.10.0-1ubuntu3_all.deb ... 235s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 235s Selecting previously unselected package python3-hdmedians. 235s Preparing to unpack .../54-python3-hdmedians_0.14.2-5.1build1_ppc64el.deb ... 235s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 235s Selecting previously unselected package python3-iniconfig. 235s Preparing to unpack .../55-python3-iniconfig_1.1.1-2_all.deb ... 235s Unpacking python3-iniconfig (1.1.1-2) ... 235s Selecting previously unselected package python3-parso. 235s Preparing to unpack .../56-python3-parso_0.8.3-1_all.deb ... 235s Unpacking python3-parso (0.8.3-1) ... 235s Selecting previously unselected package python3-typeshed. 235s Preparing to unpack .../57-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 235s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 236s Selecting previously unselected package python3-jedi. 236s Preparing to unpack .../58-python3-jedi_0.19.1+ds1-1_all.deb ... 236s Unpacking python3-jedi (0.19.1+ds1-1) ... 236s Selecting previously unselected package python3-traitlets. 236s Preparing to unpack .../59-python3-traitlets_5.5.0-2_all.deb ... 236s Unpacking python3-traitlets (5.5.0-2) ... 236s Selecting previously unselected package python3-matplotlib-inline. 236s Preparing to unpack .../60-python3-matplotlib-inline_0.1.6-2_all.deb ... 236s Unpacking python3-matplotlib-inline (0.1.6-2) ... 236s Selecting previously unselected package python3-ptyprocess. 236s Preparing to unpack .../61-python3-ptyprocess_0.7.0-5_all.deb ... 236s Unpacking python3-ptyprocess (0.7.0-5) ... 236s Selecting previously unselected package python3-pexpect. 236s Preparing to unpack .../62-python3-pexpect_4.9-2_all.deb ... 236s Unpacking python3-pexpect (4.9-2) ... 236s Selecting previously unselected package python3-wcwidth. 236s Preparing to unpack .../63-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 236s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 236s Selecting previously unselected package python3-prompt-toolkit. 236s Preparing to unpack .../64-python3-prompt-toolkit_3.0.47-1_all.deb ... 236s Unpacking python3-prompt-toolkit (3.0.47-1) ... 236s Selecting previously unselected package python3-pure-eval. 236s Preparing to unpack .../65-python3-pure-eval_0.2.2-2_all.deb ... 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277s Removing autopkgtest-satdep (0) ... 278s autopkgtest [19:37:48]: test import-skbio: [----------------------- 280s autopkgtest [19:37:50]: test import-skbio: -----------------------] 281s autopkgtest [19:37:51]: test import-skbio: - - - - - - - - - - results - - - - - - - - - - 281s import-skbio PASS 281s autopkgtest [19:37:51]: test testsuite: preparing testbed 282s Reading package lists... 283s Building dependency tree... 283s Reading state information... 283s Starting pkgProblemResolver with broken count: 0 283s Starting 2 pkgProblemResolver with broken count: 0 283s Done 283s The following NEW packages will be installed: 283s autopkgtest-satdep 283s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 283s Need to get 0 B/720 B of archives. 283s After this operation, 0 B of additional disk space will be used. 283s Get:1 /tmp/autopkgtest.jfRsan/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 283s Selecting previously unselected package autopkgtest-satdep. 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Note that the correlation/,/After permuting host : parasite interactions, we find that the observed/d {} ; 286s + find . -name power.py -exec sed -i /Now, let's use random sampling to estimate the power of our test on/,/Based on this power estimate, as we increase our confidence that we have not/d {} ; 286s + http_proxy=http://127.0.0.1:9 python3 -m pytest --pyargs skbio 290s ============================= test session starts ============================== 290s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 290s rootdir: /tmp/autopkgtest.jfRsan/autopkgtest_tmp 290s collected 2390 items 290s 291s skbio/alignment/tests/test_pairwise.py ......................... [ 1%] 291s skbio/alignment/tests/test_ssw.py ........................... [ 2%] 291s skbio/alignment/tests/test_tabular_msa.py .............................. [ 3%] 291s ........................................................................ 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[100%] 353s 353s =============================== warnings summary =============================== 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_kwargs_are_usable 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_DNA 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_Protein 353s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_type_mismatch 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: local_pairwise_align_ssw is deprecated as of scikit-bio version 0.5.8, and will be removed in version 0.6.0. This will be removed or replaced, in favor of more general-purpose performant aligners. Additional details at https://github.com/biocore/scikit-bio/issues/1814 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 353s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_constructor_makes_shallow_copy_of_positional_metadata 353s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/metadata/_testing.py:445: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 353s df['bar'][0].append(42) 353s 353s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 353s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_positional_metadata_setter_makes_shallow_copy 353s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/metadata/_testing.py:823: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 353s df['bar'][0].append(42) 353s 353s skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in divide 353s gap_freqs /= length 353s 353s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: invalid value encountered in scalar divide 353s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 353s 353s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/diversity/alpha/_base.py:887: RuntimeWarning: invalid value encountered in divide 353s freqs = counts / counts.sum() 353s 353s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: divide by zero encountered in log 353s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 353s 353s skbio/diversity/tests/test_block.py: 3 warnings 353s skbio/diversity/tests/test_driver.py: 9 warnings 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 353s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 353s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/sequence/_sequence.py:1820: RuntimeWarning: invalid value encountered in divide 353s obs_counts = obs_counts / len(self) 353s 353s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/distance/_mantel.py:354: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 353s warnings.warn(ConstantInputWarning()) 353s 353s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/distance/_mantel.py:473: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 353s warnings.warn(ConstantInputWarning()) 353s 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 353s warn( 353s 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 353s warn( 353s 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in divide 353s proportion_explained = eigvals / sum_eigenvalues 353s 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/distance/_permdisp.py:290: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 353s stat, _ = f_oneway(*groups) 353s 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 353s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00775832514778062 and the largest is 2.7077929489469246. 353s warn( 353s 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_no_metadata 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_numeric_metadata_and_plot_options 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_png 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_png 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_svg 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_svg 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:285: UserWarning: Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations. 353s fig.tight_layout() 353s 353s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:263: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored 353s plot = scatter_fn(c=point_colors, cmap=cmap) 353s 353s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 353s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 353s return self.run(*args, **kwds) 353s 353s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAResults_biplot_score::test_biplot_score 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/ordination/tests/test_redundancy_analysis.py:248: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 353s scaling = (rda_.eigvals[0] / rda_.eigvals[:6]) 353s 353s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 353s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:531: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 353s res = hypotest_fun_out(*samples, **kwds) 353s 353s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/composition.py:1589: ConstantInputWarning: Each of the input arrays is constant; the F statistic is not defined or infinite 353s return significance_test(*[x[cats == k] for k in cs]) 353s 353s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/composition.py:982: RuntimeWarning: divide by zero encountered in log 353s X_log = np.log(mat) 353s 353s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 353s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 353s X -= avg[:, None] 353s 353s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/composition.py:837: RuntimeWarning: divide by zero encountered in log 353s x = np.log(x) 353s 353s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 353s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 353s x = asanyarray(arr - arrmean) 353s 353s skbio/stats/tests/test_gradient.py: 13 warnings 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/gradient.py:168: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 353s np.abs((w_vector[i] - w_vector[i-1])) 353s 353s skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/gradient.py:166: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 353s trajectories.loc[idx] = ( 353s 353s skbio/stats/tests/test_power.py: 27 warnings 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/stats/power.py:1122: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 353s pwr[id2] = _calculate_power(ps, a) 353s 353s skbio/util/tests/test_decorator.py::TestDeprecated::test_function_output 353s /tmp/autopkgtest.jfRsan/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). 353s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 353s 353s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 353s = 2350 passed, 30 skipped, 8 xfailed, 2 xpassed, 119 warnings in 66.57s (0:01:06) = 354s autopkgtest [19:39:04]: test testsuite: -----------------------] 354s autopkgtest [19:39:04]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 354s testsuite PASS 355s autopkgtest [19:39:05]: @@@@@@@@@@@@@@@@@@@@ summary 355s import-skbio PASS 355s testsuite PASS 367s nova [W] Using flock in scalingstack-bos02-ppc64el 367s Creating nova instance adt-oracular-ppc64el-python-skbio-20240627-193310-juju-7f2275-prod-proposed-migration-environment-2-1265330d-5192-4b48-8724-be2c977209f2 from image adt/ubuntu-oracular-ppc64el-server-20240626.img (UUID fa594093-eedb-4d89-8a75-780351d83ba9)...