0s autopkgtest [01:43:11]: starting date and time: 2024-06-08 01:43:11+0000 0s autopkgtest [01:43:11]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [01:43:11]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.48yzymnw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-6.secgroup --name adt-oracular-ppc64el-python-skbio-20240608-014310-juju-7f2275-prod-proposed-migration-environment-3-e3c0b413-066f-4e70-aab9-6131c545fcf2 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 169s autopkgtest [01:46:00]: testbed dpkg architecture: ppc64el 169s autopkgtest [01:46:00]: testbed apt version: 2.9.3 169s autopkgtest [01:46:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 170s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 170s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 171s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [336 kB] 171s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 171s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2864 B] 171s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [54.3 kB] 171s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1860 B] 171s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [300 kB] 171s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1768 B] 171s Fetched 858 kB in 1s (1032 kB/s) 171s Reading package lists... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Calculating upgrade... 174s The following packages will be upgraded: 174s debianutils libheif-plugin-aomdec libheif-plugin-aomenc 174s libheif-plugin-libde265 libheif1 libnetplan1 netplan-generator netplan.io 174s python3-netplan 174s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 731 kB of archives. 174s After this operation, 5120 B of additional disk space will be used. 174s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el debianutils ppc64el 5.18 [90.5 kB] 174s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan-generator ppc64el 1.0-3ubuntu1 [59.3 kB] 174s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-netplan ppc64el 1.0-3ubuntu1 [21.8 kB] 174s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan.io ppc64el 1.0-3ubuntu1 [66.6 kB] 174s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnetplan1 ppc64el 1.0-3ubuntu1 [138 kB] 174s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomdec ppc64el 1.17.6-3 [10.2 kB] 174s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomenc ppc64el 1.17.6-3 [16.6 kB] 174s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif1 ppc64el 1.17.6-3 [320 kB] 174s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-libde265 ppc64el 1.17.6-3 [8484 B] 175s Fetched 731 kB in 0s (1475 kB/s) 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 175s Preparing to unpack .../debianutils_5.18_ppc64el.deb ... 175s Unpacking debianutils (5.18) over (5.17build1) ... 175s Setting up debianutils (5.18) ... 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 175s Preparing to unpack .../0-netplan-generator_1.0-3ubuntu1_ppc64el.deb ... 175s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 175s Unpacking netplan-generator (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 175s Preparing to unpack .../1-python3-netplan_1.0-3ubuntu1_ppc64el.deb ... 175s Unpacking python3-netplan (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 175s Preparing to unpack .../2-netplan.io_1.0-3ubuntu1_ppc64el.deb ... 175s Unpacking netplan.io (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 175s Preparing to unpack .../3-libnetplan1_1.0-3ubuntu1_ppc64el.deb ... 175s Unpacking libnetplan1:ppc64el (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 175s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-3_ppc64el.deb ... 175s Unpacking libheif-plugin-aomdec:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 175s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-3_ppc64el.deb ... 175s Unpacking libheif-plugin-aomenc:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 175s Preparing to unpack .../6-libheif1_1.17.6-3_ppc64el.deb ... 175s Unpacking libheif1:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 175s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-3_ppc64el.deb ... 175s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 175s Setting up libnetplan1:ppc64el (1.0-3ubuntu1) ... 175s Setting up python3-netplan (1.0-3ubuntu1) ... 175s Setting up netplan-generator (1.0-3ubuntu1) ... 175s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 175s Setting up netplan.io (1.0-3ubuntu1) ... 175s Setting up libheif-plugin-aomdec:ppc64el (1.17.6-3) ... 175s Setting up libheif-plugin-libde265:ppc64el (1.17.6-3) ... 175s Setting up libheif1:ppc64el (1.17.6-3) ... 175s Setting up libheif-plugin-aomenc:ppc64el (1.17.6-3) ... 175s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 175s Processing triggers for man-db (2.12.1-1) ... 177s Processing triggers for dbus (1.14.10-4ubuntu4) ... 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 178s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 178s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 178s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 178s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 179s Reading package lists... 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Calculating upgrade... 180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [01:46:14]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 183s autopkgtest [01:46:14]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 187s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (dsc) [2803 B] 187s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (tar) [3559 kB] 187s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-skbio 0.5.9-4build1 (diff) [15.7 kB] 187s gpgv: Signature made Wed Apr 10 15:30:06 2024 UTC 187s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 187s gpgv: Can't check signature: No public key 187s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4build1.dsc: no acceptable signature found 187s autopkgtest [01:46:18]: testing package python-skbio version 0.5.9-4build1 188s autopkgtest [01:46:19]: build not needed 203s autopkgtest [01:46:34]: test import-skbio: preparing testbed 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 205s The following additional packages will be installed: 205s blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 libgraphite2-3 205s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjs-jquery 205s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblzf1 libopenjp2-7 205s libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 libtk8.6 libwebpdemux2 205s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 205s python3-appdirs python3-asttokens python3-brotli python3-contourpy 205s python3-cycler python3-dateutil python3-decorator python3-executing 205s python3-fonttools python3-fs python3-h5py python3-h5py-serial 205s python3-hdmedians python3-iniconfig python3-ipython python3-jedi 205s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 205s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 205s python3-packaging python3-pandas python3-pandas-lib python3-parso 205s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 205s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 205s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 205s python3-traitlets python3-typeshed python3-tz python3-ufolib2 205s python3-unicodedata2 python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 205s Suggested packages: 205s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 205s python-h5py-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 205s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 205s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 205s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 205s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc 205s gfortran python-numpy-doc python3-dev python-pandas-doc python3-statsmodels 205s python-pexpect-doc python-pil-doc python-scipy-doc python-skbio-doc 205s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 205s Recommended packages: 205s javascript-common python3-bs4 python3-cssselect python3-html5lib 205s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 205s python3-tables python3-olefile g++ | c++-compiler isympy-common 206s The following NEW packages will be installed: 206s autopkgtest-satdep blt fonts-lyx libaec0 libblas3 libgfortran5 libgomp1 206s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 206s libimagequant0 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 206s liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libssw0 libsz2 libtcl8.6 206s libtk8.6 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 206s python-matplotlib-data python3-appdirs python3-asttokens python3-brotli 206s python3-contourpy python3-cycler python3-dateutil python3-decorator 206s python3-executing python3-fonttools python3-fs python3-h5py 206s python3-h5py-serial python3-hdmedians python3-iniconfig python3-ipython 206s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 206s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 206s python3-packaging python3-pandas python3-pandas-lib python3-parso 206s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 206s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 206s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 206s python3-traitlets python3-typeshed python3-tz python3-ufolib2 206s python3-unicodedata2 python3-wcwidth tk8.6-blt2.5 unicode-data x11-common 206s 0 upgraded, 82 newly installed, 0 to remove and 0 not upgraded. 206s Need to get 72.1 MB/72.1 MB of archives. 206s After this operation, 340 MB of additional disk space will be used. 206s Get:1 /tmp/autopkgtest.C4BCQb/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 206s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 206s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 206s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 206s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 206s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 206s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 207s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 207s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 207s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-lyx all 2.4.0-1 [171 kB] 207s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libaec0 ppc64el 1.1.3-1 [30.1 kB] 207s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 208s Get:13 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 208s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB] 208s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB] 208s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 208s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsz2 ppc64el 1.1.3-1 [5566 B] 208s Get:18 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu4 [1395 kB] 208s Get:19 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu4 [70.9 kB] 208s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 208s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 209s Get:22 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 209s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 210s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 210s Get:25 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 210s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 210s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 210s Get:28 http://ftpmaster.internal/ubuntu oracular/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 210s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libssw0 ppc64el 1.1-14build1 [24.5 kB] 210s Get:30 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 210s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 210s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 210s Get:33 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 211s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 211s Get:35 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-asttokens all 2.4.1-1 [20.9 kB] 211s Get:36 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 211s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 212s Get:38 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-contourpy ppc64el 1.0.7-3 [200 kB] 212s Get:39 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 212s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 212s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 212s Get:42 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-executing all 2.0.1-0.1 [23.3 kB] 212s Get:43 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-scipy ppc64el 1.11.4-10 [16.9 MB] 216s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 216s Get:45 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 216s Get:46 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sympy all 1.12-8 [3966 kB] 217s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 217s Get:48 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 217s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 218s Get:50 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 218s Get:51 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 218s Get:52 http://ftpmaster.internal/ubuntu oracular/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 220s Get:53 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 220s Get:54 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu3 [955 kB] 220s Get:55 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-h5py all 3.10.0-1ubuntu3 [7978 B] 220s Get:56 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1build1 [147 kB] 220s Get:57 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 220s Get:58 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 220s Get:59 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-typeshed all 0.0~git20231111.6764465-3 [1274 kB] 220s Get:60 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-jedi all 0.19.1+ds1-1 [693 kB] 220s Get:61 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-traitlets all 5.5.0-2 [85.0 kB] 220s Get:62 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 220s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-ptyprocess all 0.7.0-5 [15.1 kB] 220s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 220s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 220s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-prompt-toolkit all 3.0.46-1 [256 kB] 220s Get:67 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pure-eval all 0.2.2-2 [11.1 kB] 220s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 220s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ipython all 8.20.0-1ubuntu1 [561 kB] 221s Get:70 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-kiwisolver ppc64el 1.4.5-1 [55.5 kB] 221s Get:71 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB] 221s Get:72 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pil ppc64el 10.3.0-2 [491 kB] 221s Get:73 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tk ppc64el 3.12.3-0ubuntu1 [105 kB] 221s Get:74 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pil.imagetk ppc64el 10.3.0-2 [9572 B] 221s Get:75 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 221s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib ppc64el 3.6.3-2ubuntu1 [6175 kB] 221s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 221s Get:78 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-8 [4587 kB] 222s Get:79 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas all 2.1.4+dfsg-8 [3042 kB] 222s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 222s Get:81 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-pytest all 8.2.2-1ubuntu1 [250 kB] 222s Get:82 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-skbio ppc64el 0.5.9-4build1 [789 kB] 223s Fetched 72.1 MB in 17s (4291 kB/s) 223s Selecting previously unselected package libtcl8.6:ppc64el. 223s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 223s Preparing to unpack .../00-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 223s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 223s Selecting previously unselected package libxrender1:ppc64el. 223s Preparing to unpack .../01-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 223s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 223s Selecting previously unselected package libxft2:ppc64el. 223s Preparing to unpack .../02-libxft2_2.3.6-1build1_ppc64el.deb ... 223s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 223s Selecting previously unselected package x11-common. 223s Preparing to unpack .../03-x11-common_1%3a7.7+23ubuntu3_all.deb ... 223s Unpacking x11-common (1:7.7+23ubuntu3) ... 223s Selecting previously unselected package libxss1:ppc64el. 223s Preparing to unpack .../04-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 223s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 223s Selecting previously unselected package libtk8.6:ppc64el. 223s Preparing to unpack .../05-libtk8.6_8.6.14-1build1_ppc64el.deb ... 223s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 223s Selecting previously unselected package tk8.6-blt2.5. 223s Preparing to unpack .../06-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 223s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 223s Selecting previously unselected package blt. 223s Preparing to unpack .../07-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 223s Unpacking blt (2.5.3+dfsg-7build1) ... 223s Selecting previously unselected package fonts-lyx. 223s Preparing to unpack .../08-fonts-lyx_2.4.0-1_all.deb ... 223s Unpacking fonts-lyx (2.4.0-1) ... 223s Selecting previously unselected package libaec0:ppc64el. 223s Preparing to unpack .../09-libaec0_1.1.3-1_ppc64el.deb ... 223s Unpacking libaec0:ppc64el (1.1.3-1) ... 223s Selecting previously unselected package libblas3:ppc64el. 223s Preparing to unpack .../10-libblas3_3.12.0-3build1_ppc64el.deb ... 223s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 223s Selecting previously unselected package libgfortran5:ppc64el. 223s Preparing to unpack .../11-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 223s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 223s Selecting previously unselected package libgomp1:ppc64el. 223s Preparing to unpack .../12-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ... 223s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ... 223s Selecting previously unselected package libgraphite2-3:ppc64el. 223s Preparing to unpack .../13-libgraphite2-3_1.3.14-2build1_ppc64el.deb ... 223s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ... 223s Selecting previously unselected package libharfbuzz0b:ppc64el. 223s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 223s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 223s Selecting previously unselected package libsz2:ppc64el. 223s Preparing to unpack .../15-libsz2_1.1.3-1_ppc64el.deb ... 223s Unpacking libsz2:ppc64el (1.1.3-1) ... 223s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 223s Preparing to unpack .../16-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 223s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 223s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 223s Preparing to unpack .../17-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_ppc64el.deb ... 223s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu4) ... 223s Selecting previously unselected package libimagequant0:ppc64el. 223s Preparing to unpack .../18-libimagequant0_2.18.0-1build1_ppc64el.deb ... 223s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 223s Selecting previously unselected package libjs-jquery. 223s Preparing to unpack .../19-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 223s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 223s Selecting previously unselected package libjs-jquery-ui. 223s Preparing to unpack .../20-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 223s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 223s Selecting previously unselected package liblapack3:ppc64el. 223s Preparing to unpack .../21-liblapack3_3.12.0-3build1_ppc64el.deb ... 223s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 223s Selecting previously unselected package liblbfgsb0:ppc64el. 223s Preparing to unpack .../22-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 223s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 223s Selecting previously unselected package liblcms2-2:ppc64el. 223s Preparing to unpack .../23-liblcms2-2_2.14-2build1_ppc64el.deb ... 223s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 223s Selecting previously unselected package liblzf1:ppc64el. 223s Preparing to unpack .../24-liblzf1_3.6-4_ppc64el.deb ... 223s Unpacking liblzf1:ppc64el (3.6-4) ... 224s Selecting previously unselected package libqhull-r8.0:ppc64el. 224s Preparing to unpack .../25-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 224s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 224s Selecting previously unselected package libraqm0:ppc64el. 224s Preparing to unpack .../26-libraqm0_0.10.1-1build1_ppc64el.deb ... 224s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 224s Selecting previously unselected package libssw0:ppc64el. 224s Preparing to unpack .../27-libssw0_1.1-14build1_ppc64el.deb ... 224s Unpacking libssw0:ppc64el (1.1-14build1) ... 224s Selecting previously unselected package libwebpdemux2:ppc64el. 224s Preparing to unpack .../28-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 224s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 224s Selecting previously unselected package libwebpmux3:ppc64el. 224s Preparing to unpack .../29-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 224s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 224s Selecting previously unselected package libxslt1.1:ppc64el. 224s Preparing to unpack .../30-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 224s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 224s Selecting previously unselected package python-matplotlib-data. 224s Preparing to unpack .../31-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 224s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 224s Selecting previously unselected package python3-appdirs. 224s Preparing to unpack .../32-python3-appdirs_1.4.4-4_all.deb ... 224s Unpacking python3-appdirs (1.4.4-4) ... 224s Selecting previously unselected package python3-asttokens. 224s Preparing to unpack .../33-python3-asttokens_2.4.1-1_all.deb ... 224s Unpacking python3-asttokens (2.4.1-1) ... 224s Selecting previously unselected package python3-brotli. 224s Preparing to unpack .../34-python3-brotli_1.1.0-2build2_ppc64el.deb ... 224s Unpacking python3-brotli (1.1.0-2build2) ... 224s Selecting previously unselected package python3-numpy. 224s Preparing to unpack .../35-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 224s Unpacking python3-numpy (1:1.26.4+ds-10) ... 224s Selecting previously unselected package python3-contourpy. 224s Preparing to unpack .../36-python3-contourpy_1.0.7-3_ppc64el.deb ... 224s Unpacking python3-contourpy (1.0.7-3) ... 224s Selecting previously unselected package python3-cycler. 224s Preparing to unpack .../37-python3-cycler_0.12.1-1_all.deb ... 224s Unpacking python3-cycler (0.12.1-1) ... 224s Selecting previously unselected package python3-dateutil. 224s Preparing to unpack .../38-python3-dateutil_2.9.0-2_all.deb ... 224s Unpacking python3-dateutil (2.9.0-2) ... 224s Selecting previously unselected package python3-decorator. 224s Preparing to unpack .../39-python3-decorator_5.1.1-5_all.deb ... 224s Unpacking python3-decorator (5.1.1-5) ... 224s Selecting previously unselected package python3-executing. 224s Preparing to unpack .../40-python3-executing_2.0.1-0.1_all.deb ... 224s Unpacking python3-executing (2.0.1-0.1) ... 224s Selecting previously unselected package python3-scipy. 224s Preparing to unpack .../41-python3-scipy_1.11.4-10_ppc64el.deb ... 224s Unpacking python3-scipy (1.11.4-10) ... 225s Selecting previously unselected package python3-ufolib2. 225s Preparing to unpack .../42-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 225s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 225s Selecting previously unselected package python3-mpmath. 225s Preparing to unpack .../43-python3-mpmath_1.3.0-1_all.deb ... 225s Unpacking python3-mpmath (1.3.0-1) ... 225s Selecting previously unselected package python3-sympy. 225s Preparing to unpack .../44-python3-sympy_1.12-8_all.deb ... 225s Unpacking python3-sympy (1.12-8) ... 225s Selecting previously unselected package python3-tz. 225s Preparing to unpack .../45-python3-tz_2024.1-2_all.deb ... 225s Unpacking python3-tz (2024.1-2) ... 225s Selecting previously unselected package python3-fs. 225s Preparing to unpack .../46-python3-fs_2.4.16-4_all.deb ... 225s Unpacking python3-fs (2.4.16-4) ... 225s Selecting previously unselected package python3-lxml:ppc64el. 225s Preparing to unpack .../47-python3-lxml_5.2.1-1_ppc64el.deb ... 225s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 226s Selecting previously unselected package python3-lz4. 226s Preparing to unpack .../48-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 226s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 226s Selecting previously unselected package python3-unicodedata2. 226s Preparing to unpack .../49-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 226s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 226s Selecting previously unselected package unicode-data. 226s Preparing to unpack .../50-unicode-data_15.1.0-1_all.deb ... 226s Unpacking unicode-data (15.1.0-1) ... 226s Selecting previously unselected package python3-fonttools. 226s Preparing to unpack .../51-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 226s Unpacking python3-fonttools (4.46.0-1build2) ... 226s Selecting previously unselected package python3-h5py-serial. 226s Preparing to unpack .../52-python3-h5py-serial_3.10.0-1ubuntu3_ppc64el.deb ... 226s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 226s Selecting previously unselected package python3-h5py. 226s Preparing to unpack .../53-python3-h5py_3.10.0-1ubuntu3_all.deb ... 226s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 226s Selecting previously unselected package python3-hdmedians. 226s Preparing to unpack .../54-python3-hdmedians_0.14.2-5.1build1_ppc64el.deb ... 226s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 226s Selecting previously unselected package python3-iniconfig. 226s Preparing to unpack .../55-python3-iniconfig_1.1.1-2_all.deb ... 226s Unpacking python3-iniconfig (1.1.1-2) ... 226s Selecting previously unselected package python3-parso. 226s Preparing to unpack .../56-python3-parso_0.8.3-1_all.deb ... 226s Unpacking python3-parso (0.8.3-1) ... 226s Selecting previously unselected package python3-typeshed. 226s Preparing to unpack .../57-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... 226s Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... 227s Selecting previously unselected package python3-jedi. 227s Preparing to unpack .../58-python3-jedi_0.19.1+ds1-1_all.deb ... 227s Unpacking python3-jedi (0.19.1+ds1-1) ... 227s Selecting previously unselected package python3-traitlets. 227s Preparing to unpack .../59-python3-traitlets_5.5.0-2_all.deb ... 227s Unpacking python3-traitlets (5.5.0-2) ... 227s Selecting previously unselected package python3-matplotlib-inline. 227s Preparing to unpack .../60-python3-matplotlib-inline_0.1.6-2_all.deb ... 227s Unpacking python3-matplotlib-inline (0.1.6-2) ... 227s Selecting previously unselected package python3-ptyprocess. 227s Preparing to unpack .../61-python3-ptyprocess_0.7.0-5_all.deb ... 227s Unpacking python3-ptyprocess (0.7.0-5) ... 227s Selecting previously unselected package python3-pexpect. 227s Preparing to unpack .../62-python3-pexpect_4.9-2_all.deb ... 227s Unpacking python3-pexpect (4.9-2) ... 227s Selecting previously unselected package python3-wcwidth. 227s Preparing to unpack .../63-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 227s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 227s Selecting previously unselected package python3-prompt-toolkit. 227s Preparing to unpack .../64-python3-prompt-toolkit_3.0.46-1_all.deb ... 227s Unpacking python3-prompt-toolkit (3.0.46-1) ... 227s Selecting previously unselected package python3-pure-eval. 227s Preparing to unpack .../65-python3-pure-eval_0.2.2-2_all.deb ... 227s Unpacking python3-pure-eval (0.2.2-2) ... 227s Selecting previously unselected package python3-stack-data. 227s Preparing to unpack .../66-python3-stack-data_0.6.3-1_all.deb ... 227s Unpacking python3-stack-data (0.6.3-1) ... 227s Selecting previously unselected package python3-ipython. 227s Preparing to unpack .../67-python3-ipython_8.20.0-1ubuntu1_all.deb ... 227s Unpacking python3-ipython (8.20.0-1ubuntu1) ... 228s Selecting previously unselected package python3-kiwisolver. 228s Preparing to unpack .../68-python3-kiwisolver_1.4.5-1_ppc64el.deb ... 228s Unpacking python3-kiwisolver (1.4.5-1) ... 228s Selecting previously unselected package libopenjp2-7:ppc64el. 228s Preparing to unpack .../69-libopenjp2-7_2.5.0-2build3_ppc64el.deb ... 228s Unpacking libopenjp2-7:ppc64el (2.5.0-2build3) ... 228s Selecting previously unselected package python3-pil:ppc64el. 228s Preparing to unpack .../70-python3-pil_10.3.0-2_ppc64el.deb ... 228s Unpacking python3-pil:ppc64el (10.3.0-2) ... 228s Selecting previously unselected package python3-tk:ppc64el. 228s Preparing to unpack .../71-python3-tk_3.12.3-0ubuntu1_ppc64el.deb ... 228s Unpacking python3-tk:ppc64el (3.12.3-0ubuntu1) ... 228s Selecting previously unselected package python3-pil.imagetk:ppc64el. 228s Preparing to unpack .../72-python3-pil.imagetk_10.3.0-2_ppc64el.deb ... 228s Unpacking python3-pil.imagetk:ppc64el (10.3.0-2) ... 228s Selecting previously unselected package python3-packaging. 228s Preparing to unpack .../73-python3-packaging_24.0-1_all.deb ... 228s Unpacking python3-packaging (24.0-1) ... 228s Selecting previously unselected package python3-matplotlib. 228s Preparing to unpack .../74-python3-matplotlib_3.6.3-2ubuntu1_ppc64el.deb ... 228s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 228s Selecting previously unselected package python3-natsort. 228s Preparing to unpack .../75-python3-natsort_8.0.2-2_all.deb ... 228s Unpacking python3-natsort (8.0.2-2) ... 228s Selecting previously unselected package python3-pandas-lib:ppc64el. 228s Preparing to unpack .../76-python3-pandas-lib_2.1.4+dfsg-8_ppc64el.deb ... 228s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 228s Selecting previously unselected package python3-pandas. 228s Preparing to unpack .../77-python3-pandas_2.1.4+dfsg-8_all.deb ... 228s Unpacking python3-pandas (2.1.4+dfsg-8) ... 229s Selecting previously unselected package python3-pluggy. 229s Preparing to unpack .../78-python3-pluggy_1.5.0-1_all.deb ... 229s Unpacking python3-pluggy (1.5.0-1) ... 229s Selecting previously unselected package python3-pytest. 229s Preparing to unpack .../79-python3-pytest_8.2.2-1ubuntu1_all.deb ... 229s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 229s Selecting previously unselected package python3-skbio. 229s Preparing to unpack .../80-python3-skbio_0.5.9-4build1_ppc64el.deb ... 229s Unpacking python3-skbio (0.5.9-4build1) ... 229s Selecting previously unselected package autopkgtest-satdep. 229s Preparing to unpack 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installed.) 270s Removing autopkgtest-satdep (0) ... 271s autopkgtest [01:47:42]: test import-skbio: [----------------------- 274s autopkgtest [01:47:45]: test import-skbio: -----------------------] 274s import-skbio PASS 274s autopkgtest [01:47:45]: test import-skbio: - - - - - - - - - - results - - - - - - - - - - 275s autopkgtest [01:47:46]: test testsuite: preparing testbed 276s Reading package lists... 276s Building dependency tree... 276s Reading state information... 276s Starting pkgProblemResolver with broken count: 0 276s Starting 2 pkgProblemResolver with broken count: 0 276s Done 276s The following NEW packages will be installed: 276s autopkgtest-satdep 276s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 0 B/720 B of archives. 276s After this operation, 0 B of additional disk space will be used. 276s Get:1 /tmp/autopkgtest.C4BCQb/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 277s Selecting previously unselected package 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Note that the correlation/,/After permuting host : parasite interactions, we find that the observed/d {} ; 279s + find . -name power.py -exec sed -i /Now, let's use random sampling to estimate the power of our test on/,/Based on this power estimate, as we increase our confidence that we have not/d {} ; 279s + http_proxy=http://127.0.0.1:9 python3 -m pytest --pyargs skbio 283s ============================= test session starts ============================== 283s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 283s rootdir: /tmp/autopkgtest.C4BCQb/autopkgtest_tmp 283s collected 2390 items 283s 284s skbio/alignment/tests/test_pairwise.py ......................... [ 1%] 284s skbio/alignment/tests/test_ssw.py ........................... [ 2%] 284s skbio/alignment/tests/test_tabular_msa.py .............................. [ 3%] 284s ........................................................................ 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[ 93%] 348s skbio/tree/tests/test_nj.py ........... [ 93%] 348s skbio/tree/tests/test_tree.py .......................................... [ 95%] 348s ................................................... [ 97%] 348s skbio/util/tests/test_decorator.py ....................... [ 98%] 348s skbio/util/tests/test_misc.py .................... [ 99%] 349s skbio/util/tests/test_testing.py ............... [100%] 349s 349s =============================== warnings summary =============================== 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_kwargs_are_usable 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_DNA 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_Protein 349s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_type_mismatch 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: local_pairwise_align_ssw is deprecated as of scikit-bio version 0.5.8, and will be removed in version 0.6.0. This will be removed or replaced, in favor of more general-purpose performant aligners. Additional details at https://github.com/biocore/scikit-bio/issues/1814 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 349s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_constructor_makes_shallow_copy_of_positional_metadata 349s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/metadata/_testing.py:445: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 349s df['bar'][0].append(42) 349s 349s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 349s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_positional_metadata_setter_makes_shallow_copy 349s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/metadata/_testing.py:823: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 349s df['bar'][0].append(42) 349s 349s skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in divide 349s gap_freqs /= length 349s 349s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: invalid value encountered in scalar divide 349s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 349s 349s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/diversity/alpha/_base.py:887: RuntimeWarning: invalid value encountered in divide 349s freqs = counts / counts.sum() 349s 349s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: divide by zero encountered in log 349s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 349s 349s skbio/diversity/tests/test_block.py: 3 warnings 349s skbio/diversity/tests/test_driver.py: 9 warnings 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 349s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 349s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/sequence/_sequence.py:1820: RuntimeWarning: invalid value encountered in divide 349s obs_counts = obs_counts / len(self) 349s 349s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/distance/_mantel.py:354: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 349s warnings.warn(ConstantInputWarning()) 349s 349s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/distance/_mantel.py:473: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 349s warnings.warn(ConstantInputWarning()) 349s 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 349s warn( 349s 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 349s warn( 349s 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in divide 349s proportion_explained = eigvals / sum_eigenvalues 349s 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 349s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 349s /usr/lib/python3/dist-packages/scipy/stats/_stats_py.py:4167: ConstantInputWarning: Each of the input arrays is constant;the F statistic is not defined or infinite 349s warnings.warn(stats.ConstantInputWarning(msg)) 349s 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 349s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00775832514778062 and the largest is 2.7077929489469246. 349s warn( 349s 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_no_metadata 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_numeric_metadata_and_plot_options 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_png 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_png 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_svg 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_svg 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:285: UserWarning: Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations. 349s fig.tight_layout() 349s 349s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:263: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored 349s plot = scatter_fn(c=point_colors, cmap=cmap) 349s 349s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 349s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 349s return self.run(*args, **kwds) 349s 349s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAResults_biplot_score::test_biplot_score 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/ordination/tests/test_redundancy_analysis.py:248: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 349s scaling = (rda_.eigvals[0] / rda_.eigvals[:6]) 349s 349s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 349s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:523: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 349s res = hypotest_fun_out(*samples, **kwds) 349s 349s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/composition.py:982: RuntimeWarning: divide by zero encountered in log 349s X_log = np.log(mat) 349s 349s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 349s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2742: RuntimeWarning: invalid value encountered in subtract 349s X -= avg[:, None] 349s 349s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/composition.py:837: RuntimeWarning: divide by zero encountered in log 349s x = np.log(x) 349s 349s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 349s /usr/lib/python3/dist-packages/numpy/core/_methods.py:173: RuntimeWarning: invalid value encountered in subtract 349s x = asanyarray(arr - arrmean) 349s 349s skbio/stats/tests/test_gradient.py: 13 warnings 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/gradient.py:168: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 349s np.abs((w_vector[i] - w_vector[i-1])) 349s 349s skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/gradient.py:166: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 349s trajectories.loc[idx] = ( 349s 349s skbio/stats/tests/test_power.py: 27 warnings 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/stats/power.py:1122: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 349s pwr[id2] = _calculate_power(ps, a) 349s 349s skbio/util/tests/test_decorator.py::TestDeprecated::test_function_output 349s /tmp/autopkgtest.C4BCQb/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). 349s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 349s 349s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 349s = 2350 passed, 30 skipped, 8 xfailed, 2 xpassed, 119 warnings in 68.94s (0:01:08) = 349s autopkgtest [01:49:00]: test testsuite: -----------------------] 350s autopkgtest [01:49:01]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 350s testsuite PASS 350s autopkgtest [01:49:01]: @@@@@@@@@@@@@@@@@@@@ summary 350s import-skbio PASS 350s testsuite PASS 362s nova [W] Using flock in scalingstack-bos02-ppc64el 362s flock: timeout while waiting to get lock 362s Creating nova instance adt-oracular-ppc64el-python-skbio-20240608-014310-juju-7f2275-prod-proposed-migration-environment-3-e3c0b413-066f-4e70-aab9-6131c545fcf2 from image adt/ubuntu-oracular-ppc64el-server-20240607.img (UUID 2e7ff4dd-25ad-4882-8618-1243d2d4ac8e)...