0s autopkgtest [22:09:17]: starting date and time: 2024-07-12 22:09:17+0000 0s autopkgtest [22:09:17]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [22:09:17]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ahp7dahi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade lucy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-23.secgroup --name adt-oracular-ppc64el-lucy-20240712-220917-juju-7f2275-prod-proposed-migration-environment-3-187fb3ee-b814-49c2-93fb-1751889fc9b6 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 154s autopkgtest [22:11:51]: testbed dpkg architecture: ppc64el 155s autopkgtest [22:11:52]: testbed apt version: 2.9.6 155s autopkgtest [22:11:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 155s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 156s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 156s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.5 kB] 156s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 156s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 156s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [74.0 kB] 156s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el c-n-f Metadata [2132 B] 156s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 156s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el c-n-f Metadata [120 B] 156s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [365 kB] 156s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el c-n-f Metadata [9000 B] 156s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1788 B] 156s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el c-n-f Metadata [120 B] 158s Fetched 997 kB in 1s (1157 kB/s) 158s Reading package lists... 160s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Calculating upgrade... 160s The following packages will be upgraded: 160s libc-bin libc-dev-bin libc-devtools libc6 libc6-dev locales 160s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s Need to get 10.1 MB of archives. 160s After this operation, 1843 kB disk space will be freed. 160s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-devtools ppc64el 2.39-3.1ubuntu3 [29.5 kB] 161s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6-dev ppc64el 2.39-3.1ubuntu3 [1982 kB] 161s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-dev-bin ppc64el 2.39-3.1ubuntu3 [21.0 kB] 161s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6 ppc64el 2.39-3.1ubuntu3 [3174 kB] 161s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-bin ppc64el 2.39-3.1ubuntu3 [720 kB] 161s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el locales all 2.39-3.1ubuntu3 [4220 kB] 162s Preconfiguring packages ... 162s Fetched 10.1 MB in 1s (7113 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 162s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_ppc64el.deb ... 162s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 162s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_ppc64el.deb ... 162s Unpacking libc6-dev:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 162s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_ppc64el.deb ... 162s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 162s Preparing to unpack .../libc6_2.39-3.1ubuntu3_ppc64el.deb ... 163s Unpacking libc6:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 163s Setting up libc6:ppc64el (2.39-3.1ubuntu3) ... 163s Error: Could not restart systemd, systemd binary not working 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 163s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_ppc64el.deb ... 163s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 163s Setting up libc-bin (2.39-3.1ubuntu3) ... 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 163s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 163s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 163s Setting up locales (2.39-3.1ubuntu3) ... 164s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 165s Setting up libc-devtools (2.39-3.1ubuntu3) ... 165s Setting up libc6-dev:ppc64el (2.39-3.1ubuntu3) ... 165s Processing triggers for man-db (2.12.1-2) ... 166s Processing triggers for systemd (256-1ubuntu1) ... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 167s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 168s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 168s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 168s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 169s Reading package lists... 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s Calculating upgrade... 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s autopkgtest [22:12:09]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 172s autopkgtest [22:12:09]: @@@@@@@@@@@@@@@@@@@@ apt-source lucy 174s Get:1 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (dsc) [1275 B] 174s Get:2 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (tar) [1458 kB] 174s Get:3 http://ftpmaster.internal/ubuntu oracular/universe lucy 1.20-4 (diff) [4632 B] 174s gpgv: Signature made Sun Mar 24 16:55:05 2024 UTC 174s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./lucy_1.20-4.dsc: no acceptable signature found 175s autopkgtest [22:12:12]: testing package lucy version 1.20-4 175s autopkgtest [22:12:12]: build not needed 175s autopkgtest [22:12:12]: test run-unit-test: preparing testbed 177s Reading package lists... 177s Building dependency tree... 177s Reading state information... 177s Starting pkgProblemResolver with broken count: 0 177s Starting 2 pkgProblemResolver with broken count: 0 177s Done 177s The following additional packages will be installed: 177s lucy 177s The following NEW packages will be installed: 177s autopkgtest-satdep lucy 177s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 177s Need to get 945 kB/946 kB of archives. 177s After this operation, 6256 kB of additional disk space will be used. 177s Get:1 /tmp/autopkgtest.GUQgxc/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 177s Get:2 http://ftpmaster.internal/ubuntu oracular/universe ppc64el lucy ppc64el 1.20-4 [945 kB] 178s Fetched 945 kB in 1s (1400 kB/s) 178s Selecting previously unselected package lucy. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 178s Preparing to unpack .../lucy_1.20-4_ppc64el.deb ... 178s Unpacking lucy (1.20-4) ... 178s Selecting previously unselected package autopkgtest-satdep. 178s Preparing to unpack .../1-autopkgtest-satdep.deb ... 178s Unpacking autopkgtest-satdep (0) ... 178s Setting up lucy (1.20-4) ... 178s Setting up autopkgtest-satdep (0) ... 178s Processing triggers for man-db (2.12.1-2) ... 180s (Reading database ... 72775 files and directories currently installed.) 180s Removing autopkgtest-satdep (0) ... 181s autopkgtest [22:12:18]: test run-unit-test: [----------------------- 181s Test - 1 181s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 181s with help from Granger, Anna, John and Terry Shea. 181s lucy: Warning! No vector file given; vector removal will not be done! 181s lucy: Warning! No splice file given; splice site will not be trimmed! 181s Phase 1: Checking the number of input sequences... 181s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 181s Phase 2: Reading sequence name, length and position data... 181s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 181s Phase 3: Reading quality values and checking good sequence regions... 181s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 181s Phase 4: Comparing to 2nd sequence file... 181s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 181s lucy: >ATIEE17TF 181s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 181s lucy: >ATIEO35TF 181s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 181s 73 low quality sequences salvaged. 181s Phase 7: Producing output sequence and quality files... 181s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1392 good sequences written in test1.seq and test1.qul. 182s ---------------Passed!---------------------------- 182s Test - 2 182s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 182s with help from Granger, Anna, John and Terry Shea. 182s lucy: Warning! No vector file given; vector removal will not be done! 182s lucy: Warning! No splice file given; splice site will not be trimmed! 182s Phase 1: Checking the number of input sequences... 182s 1 input sequences found. 182s Phase 2: Reading sequence name, length and position data... 182s 0 0 empty sequences discarded. 182s Phase 3: Reading quality values and checking good sequence regions... 182s 0 1 quality sequences read; 0 low quality sequences dropped. 182s Phase 4: 2nd sequences comparison skipped... 182s no 2nd sequence file provided. 182s Phase 7: Producing output sequence and quality files... 182s 0 1 good sequences written in test2.seq and test2.qul. 182s ---------------Passed!---------------------------- 182s Test - 3 182s Less Useful Chunks Yank (lucy) 1.20p, by Hui-Hsien Chou and Michael Holmes, 182s with help from Granger, Anna, John and Terry Shea. 182s Phase 1: Checking the number of input sequences... 182s 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 input sequences found. 182s Phase 2: Reading sequence name, length and position data... 182s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 116 empty sequences discarded. 182s Phase 3: Reading quality values and checking good sequence regions... 182s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1582 quality sequences read; 147 low quality sequences dropped. 182s Phase 4: Comparing to 2nd sequence file... 182s 0 50 100 150 200 lucy: the 2nd sequences below (except salvaged) are not found in the first sequence file 182s lucy: >ATIEE17TF 182s 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 lucy: >ATIEO34TF 182s lucy: >ATIEO35TF 182s 1200 1250 1300 1350 1400 1450 1488 2nd sequences compared; 1307 sequences extended. 182s 73 low quality sequences salvaged. 182s Phase 5: Locating splice sites...Number of splice sequences: 4 188s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 short or no insert sequences discarded. 188s Phase 6: Kicking out vector sequences... 188s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1 vector sequences discarded. 188s Phase 7: Producing output sequence and quality files... 188s 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350 1400 1450 1500 1550 1390 good sequences written in test3.seq and test3.qul. 188s 1582 sequence cleavage information written in lucy.info. 188s ---------------Passed!---------------------------- 188s autopkgtest [22:12:25]: test run-unit-test: -----------------------] 189s run-unit-test PASS 189s autopkgtest [22:12:26]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 189s autopkgtest [22:12:26]: @@@@@@@@@@@@@@@@@@@@ summary 189s run-unit-test PASS 200s nova [W] Using flock in scalingstack-bos02-ppc64el 200s Creating nova instance adt-oracular-ppc64el-lucy-20240712-220917-juju-7f2275-prod-proposed-migration-environment-3-187fb3ee-b814-49c2-93fb-1751889fc9b6 from image adt/ubuntu-oracular-ppc64el-server-20240712.img (UUID 740e1066-971a-4f95-9033-0eb4cf07697e)...