0s autopkgtest [21:35:14]: starting date and time: 2024-07-09 21:35:14+0000 0s autopkgtest [21:35:14]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [21:35:14]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pho0u_4q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-13.secgroup --name adt-oracular-ppc64el-gffread-20240709-213514-juju-7f2275-prod-proposed-migration-environment-3-0bb22842-ca74-4e1b-a80c-9ed2ab646d8a --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 199s autopkgtest [21:38:33]: testbed dpkg architecture: ppc64el 199s autopkgtest [21:38:33]: testbed apt version: 2.9.6 199s autopkgtest [21:38:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 200s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 200s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.9 kB] 200s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [357 kB] 200s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 200s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 200s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [92.2 kB] 200s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el c-n-f Metadata [2512 B] 200s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 200s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el c-n-f Metadata [120 B] 200s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [350 kB] 200s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el c-n-f Metadata [8172 B] 200s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1448 B] 200s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el c-n-f Metadata [120 B] 202s Fetched 1002 kB in 1s (1288 kB/s) 202s Reading package lists... 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Calculating upgrade... 205s The following packages will be upgraded: 205s libaom3 libpcap0.8t64 205s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Need to get 3183 kB of archives. 205s After this operation, 0 B of additional disk space will be used. 205s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpcap0.8t64 ppc64el 1.10.4-5ubuntu1 [176 kB] 205s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaom3 ppc64el 3.9.1-1 [3007 kB] 206s Fetched 3183 kB in 1s (4612 kB/s) 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72746 files and directories currently installed.) 206s Preparing to unpack .../libpcap0.8t64_1.10.4-5ubuntu1_ppc64el.deb ... 206s Unpacking libpcap0.8t64:ppc64el (1.10.4-5ubuntu1) over (1.10.4-4.1ubuntu3) ... 206s Preparing to unpack .../libaom3_3.9.1-1_ppc64el.deb ... 206s Unpacking libaom3:ppc64el (3.9.1-1) over (3.8.2-3) ... 206s Setting up libaom3:ppc64el (3.9.1-1) ... 206s Setting up libpcap0.8t64:ppc64el (1.10.4-5ubuntu1) ... 206s Processing triggers for man-db (2.12.1-2) ... 206s Processing triggers for libc-bin (2.39-0ubuntu9) ... 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 207s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 207s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 207s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 208s Reading package lists... 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s Calculating upgrade... 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 208s Reading package lists... 209s Building dependency tree... 209s Reading state information... 209s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s autopkgtest [21:38:45]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 212s autopkgtest [21:38:46]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread 213s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (dsc) [2434 B] 213s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (tar) [404 kB] 213s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (diff) [9024 B] 213s gpgv: Signature made Tue Jul 9 11:19:40 2024 UTC 213s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 213s gpgv: Can't check signature: No public key 213s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-6.dsc: no acceptable signature found 213s autopkgtest [21:38:47]: testing package gffread version 0.12.7-6 214s autopkgtest [21:38:48]: build not needed 214s autopkgtest [21:38:48]: test run-tests: preparing testbed 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 216s Starting pkgProblemResolver with broken count: 0 216s Starting 2 pkgProblemResolver with broken count: 0 216s Done 216s The following additional packages will be installed: 216s apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test 216s bioperl blt bowtie2 cnvkit cutadapt diamond-aligner emboss-data emboss-test 216s fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 216s fonts-mathjax fonts-urw-base35 gbrowse gcc-13-base genometools-common 216s gff2aplot gff2ps gffread htslib-test javascript-common 216s libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl 216s libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 216s libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 216s libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl 216s libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3 216s libboost-dev libboost1.83-dev libcairo2 libcapture-tiny-perl libcgi-pm-perl 216s libcgi-session-perl libclass-data-inheritable-perl libclone-perl 216s libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl 216s libdbd-sqlite3-perl libdbi-perl libdevel-stacktrace-perl 216s libdevel-symdump-perl libencode-locale-perl libexception-class-perl 216s libexporter-tiny-perl libfile-listing-perl libfontenc1 libgcc-13-dev 216s libgclib3t64 libgd-perl libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 216s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 216s libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl 216s libhttp-message-perl libhttp-negotiate-perl libice6 libimagequant0 216s libio-html-perl libio-socket-ssl-perl libio-string-perl libitm1 216s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 216s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 216s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 216s libjs-modernizr libjs-popper.js libjs-prettify libjs-prototype 216s libjs-scriptaculous libjs-sifter.js libjs-twitter-bootstrap-datepicker 216s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblist-moreutils-perl 216s liblist-moreutils-xs-perl liblsan0 liblua5.1-0 liblua5.4-0 216s liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto7t64 216s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 216s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 216s libpaper-utils libpaper1 libpixman-1-0 libpq5 libqhull-r8.0 libquadmath0 216s libraqm0 libsm6 libstatistics-descriptive-perl libstdc++-13-dev 216s libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl 216s libtest-deep-perl libtest-differences-perl libtest-exception-perl 216s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 216s libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl libtsan2 libubsan1 216s liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 libwww-perl 216s libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl 216s libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl 216s libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 ncbi-blast+ 216s ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css optimir 216s pandoc pandoc-data perl-openssl-defaults pigz proteinortho 216s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 216s python3-biopython python3-brotli python3-cairo python3-contourpy 216s python3-cutadapt python3-cycler python3-dateutil python3-decorator 216s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 216s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 216s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 216s python3-packaging python3-pandas python3-pandas-lib python3-pil 216s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 216s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 216s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 216s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 216s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 216s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 216s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 216s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 216s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 216s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 216s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 216s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 216s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 216s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 216s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 216s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 216s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 216s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 216s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 216s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 216s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 216s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 216s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 216s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 216s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 216s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 216s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 216s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 216s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 216s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 216s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 216s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 216s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 216s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 216s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 216s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 216s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 216s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 216s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 216s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 216s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 216s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 216s xfonts-utils xml-core zip zlib1g-dev 216s Suggested packages: 216s apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser 216s bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf 216s | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign 216s libfile-nfslock-perl postscript-viewer libev-perl libevent-perl 216s libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl 216s libboost-doc libboost1.83-doc libboost-atomic1.83-dev 216s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 216s libboost-contract1.83-dev libboost-coroutine1.83-dev 216s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 216s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 216s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 216s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 216s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 216s libboost-numpy1.83-dev libboost-program-options1.83-dev 216s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 216s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 216s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 216s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 216s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 216s libmldbm-perl libnet-daemon-perl libsql-statement-perl libdata-dump-perl 216s libio-compress-brotli-perl libjs-jquery-ui-docs fonts-mathjax-extras 216s fonts-stix libjs-mathjax-doc liblcms2-utils libcrypt-ssleay-perl 216s libstdc++-13-doc tcl8.6 tk8.6 tre-agrep libsub-name-perl 216s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl nodejs 216s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 216s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 216s ruby libjs-katex citation-style-language-styles debhelper bwa clustalo 216s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 216s probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml 216s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 216s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 216s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 216s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 216s python-mpmath-doc python3-gmpy2 python3-gdal python3-pydot 216s python3-pygraphviz gcc gfortran python-numpy-doc python3-dev python3-pytest 216s python-pandas-doc python3-statsmodels python-pil-doc python-pomegranate-doc 216s python-pybedtools-doc pdf-viewer python3-egenix-mxtexttools 216s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 216s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 216s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db 216s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 216s r-cran-testthat r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 216s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 216s r-cran-batchtools r-cran-mockery r-cran-webmockr r-cran-biocmanager 216s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 216s r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils r-bioc-edger 216s r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 216s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 216s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 216s r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp 216s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 216s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 216s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 216s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 216s r-cran-pkgload r-cran-plm r-cran-zoo cwltool cwltool | cwl-runner 216s sgml-base-doc sqlite3-doc 216s Recommended packages: 216s ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl 216s libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh 216s | csh | c-shell graphicsmagick | imagemagick ghostscript gv 216s | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl 216s libev-perl | libevent-perl libguard-perl libapache2-reload-perl 216s libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl 216s bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 216s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 216s libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl 216s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 216s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 216s libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl 216s libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl 216s libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl 216s libhtml-format-perl node-jquery libjson-xs-perl libdata-dump-perl 216s libhtml-form-perl libmailtools-perl libxml-sax-expat-perl 216s python-biopython-doc python3-pytest python3-psutil python3-bs4 216s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 216s python3-odf python3-openpyxl python3-tables python3-olefile 216s fonts-dejavu-extra g++ | c++-compiler isympy-common r-recommended r-base-dev 216s r-doc-html r-cran-testthat r-cran-future r-cran-thematic r-cran-fastmatch 216s r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery 216s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 216s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 216s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-zoo r-cran-markdown 216s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg 216s r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps 216s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf 216s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-readr 216s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 216s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 216s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 216s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 216s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt r-cran-mockr 216s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv 216s trinityrnaseq libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 216s x11-utils x11-xserver-utils 216s The following NEW packages will be installed: 216s apache2 apache2-bin apache2-data apache2-utils augustus-doc 216s autopkgtest-satdep bedtools-test bioperl blt bowtie2 cnvkit cutadapt 216s diamond-aligner emboss-data emboss-test fontconfig fonts-font-awesome 216s fonts-glyphicons-halflings fonts-lyx fonts-mathjax fonts-urw-base35 gbrowse 216s gcc-13-base genometools-common gff2aplot gff2ps gffread htslib-test 216s javascript-common libalgorithm-diff-perl libanyevent-cachedns-perl 216s libanyevent-http-perl libanyevent-perl libapache-dbi-perl 216s libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap 216s libaprutil1t64 libasan8 libatomic1 libbio-coordinate-perl 216s libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl 216s libbio-graphics-perl libbio-perl-perl libblas3 libboost-dev libboost1.83-dev 216s libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl 216s libclass-data-inheritable-perl libclone-perl libcommon-sense-perl 216s libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl 216s libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl 216s libexception-class-perl libexporter-tiny-perl libfile-listing-perl 216s libfontenc1 libgcc-13-dev libgclib3t64 libgd-perl libgfortran5 libgomp1 216s libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl 216s libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl 216s libhttp-daemon-perl libhttp-date-perl libhttp-message-perl 216s libhttp-negotiate-perl libice6 libimagequant0 libio-html-perl 216s libio-socket-ssl-perl libio-string-perl libitm1 libjs-bootstrap 216s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 216s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 216s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 216s libjs-prettify libjs-prototype libjs-scriptaculous libjs-sifter.js 216s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 216s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 216s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 216s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 216s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 216s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 216s libqhull-r8.0 libquadmath0 libraqm0 libsm6 libstatistics-descriptive-perl 216s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 216s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 216s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 216s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 216s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 216s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 216s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 216s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 216s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 216s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 216s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 216s python3-biopython python3-brotli python3-cairo python3-contourpy 216s python3-cutadapt python3-cycler python3-dateutil python3-decorator 216s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 216s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 216s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 216s python3-packaging python3-pandas python3-pandas-lib python3-pil 216s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 216s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 216s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 216s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 216s python3-xopen python3-zipp r-base-core r-bioc-annotationdbi 216s r-bioc-annotationfilter r-bioc-biobase r-bioc-biocfilecache 216s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biomart 216s r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-delayedarray 216s r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 216s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 216s r-bioc-gviz r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 216s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 216s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 216s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 216s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 216s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 216s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 216s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 216s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 216s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 216s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 216s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 216s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 216s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 216s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 216s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 216s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 216s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 216s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 216s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 216s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 216s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 216s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 216s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 216s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 216s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 216s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 216s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 216s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 216s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 216s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 216s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 216s xfonts-utils xml-core zip zlib1g-dev 216s 0 upgraded, 411 newly installed, 0 to remove and 0 not upgraded. 216s Need to get 867 MB/867 MB of archives. 216s After this operation, 2950 MB of additional disk space will be used. 216s Get:1 /tmp/autopkgtest.ioA0bv/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [900 B] 216s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapr1t64 ppc64el 1.7.2-3.2 [133 kB] 216s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1t64 ppc64el 1.6.3-2ubuntu1 [112 kB] 216s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1-dbd-sqlite3 ppc64el 1.6.3-2ubuntu1 [12.2 kB] 216s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1-ldap ppc64el 1.6.3-2ubuntu1 [9230 B] 216s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblua5.4-0 ppc64el 5.4.6-3build2 [216 kB] 217s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-bin ppc64el 2.4.59-2ubuntu2 [1558 kB] 217s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-data all 2.4.59-2ubuntu2 [163 kB] 217s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-utils ppc64el 2.4.59-2ubuntu2 [102 kB] 217s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2 ppc64el 2.4.59-2ubuntu2 [90.3 kB] 217s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el sgml-base all 1.31 [11.4 kB] 217s Get:12 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pigz ppc64el 2.8-1 [76.3 kB] 217s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB] 217s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bedtools-test all 2.31.1+dfsg-2 [18.2 MB] 218s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-string-perl all 1.08-4 [11.1 kB] 218s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdata-stag-perl all 0.14-3 [372 kB] 218s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-perl-perl all 1.7.8-1 [2580 kB] 218s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclass-data-inheritable-perl all 0.08-3 [8084 B] 218s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 218s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexception-class-perl all 1.45-1 [28.6 kB] 218s Get:21 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-deep-perl all 1.204-1 [47.1 kB] 218s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcapture-tiny-perl all 0.48-2 [20.2 kB] 218s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libalgorithm-diff-perl all 1.201-1 [41.8 kB] 218s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtext-diff-perl all 1.45-2 [25.6 kB] 218s Get:25 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-differences-perl all 0.71-1 [15.8 kB] 218s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsub-uplevel-perl all 0.2800-3 [11.6 kB] 218s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-exception-perl all 0.43-3 [13.4 kB] 218s Get:28 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-warn-perl all 0.37-2 [12.6 kB] 218s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-most-perl all 0.38-1 [21.5 kB] 218s Get:30 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bioperl all 1.7.8-1 [216 kB] 218s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 218s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 218s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 218s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 218s Get:35 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 218s Get:36 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 218s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 218s Get:38 http://ftpmaster.internal/ubuntu oracular/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 218s Get:39 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 218s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 218s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 218s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 218s Get:43 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tk ppc64el 3.12.3-0ubuntu1 [105 kB] 218s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pil.imagetk ppc64el 10.3.0-2 [9572 B] 218s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB] 218s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 218s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 218s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB] 218s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2ubuntu1 [84.6 kB] 218s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 218s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 218s Get:52 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 218s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 218s Get:54 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pil ppc64el 10.3.0-2 [491 kB] 218s Get:55 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 218s Get:56 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 218s Get:57 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 218s Get:58 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB] 218s Get:59 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-cairo ppc64el 1.26.1-1 [129 kB] 218s Get:60 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-freetype all 2.4.0-2 [81.3 kB] 218s Get:61 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 218s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 218s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 218s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el xfonts-utils ppc64el 1:7.7+6build3 [113 kB] 219s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 219s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-reportlab all 4.2.2-1 [1130 kB] 219s Get:67 http://ftpmaster.internal/ubuntu oracular/main ppc64el xml-core all 0.19 [20.3 kB] 219s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 219s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-biopython ppc64el 1.83+dfsg1-3 [1696 kB] 219s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 219s Get:71 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 219s Get:72 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-lyx all 2.4.1-1 [171 kB] 219s Get:73 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 219s Get:74 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 219s Get:75 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-contourpy ppc64el 1.0.7-3 [200 kB] 219s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 219s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 219s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 219s Get:79 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 219s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-scipy ppc64el 1.12.0-2 [18.0 MB] 220s Get:81 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 220s Get:82 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 220s Get:83 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sympy all 1.12-8 [3966 kB] 220s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 220s Get:85 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 220s Get:86 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 220s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 220s Get:88 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 220s Get:89 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 220s Get:90 http://ftpmaster.internal/ubuntu oracular/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 220s Get:91 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 220s Get:92 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-kiwisolver ppc64el 1.4.5-1 [55.5 kB] 220s Get:93 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 220s Get:94 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 220s Get:95 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib ppc64el 3.6.3-2ubuntu1 [6175 kB] 221s Get:96 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-8 [4587 kB] 221s Get:97 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas all 2.1.4+dfsg-8 [3042 kB] 221s Get:98 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-joblib all 1.3.2-2 [208 kB] 221s Get:99 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 221s Get:100 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pomegranate ppc64el 0.14.8-6 [2700 kB] 221s Get:101 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-zipp all 3.19.2-2 [10.2 kB] 221s Get:102 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-importlib-metadata all 8.0.0-2 [19.4 kB] 221s Get:103 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pyfaidx all 0.8.1.1-2 [29.6 kB] 222s Get:104 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 222s Get:105 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 222s Get:106 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pysam ppc64el 0.22.1+ds-2 [3818 kB] 222s Get:107 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 222s Get:108 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-3 [3756 kB] 222s Get:109 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 222s Get:110 http://ftpmaster.internal/ubuntu oracular/main ppc64el zip ppc64el 3.0-13build1 [198 kB] 222s Get:111 http://ftpmaster.internal/ubuntu oracular/main ppc64el unzip ppc64el 6.0-28ubuntu5 [196 kB] 222s Get:112 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB] 222s Get:113 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B] 222s Get:114 http://ftpmaster.internal/ubuntu oracular/main ppc64el xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 222s Get:115 http://ftpmaster.internal/ubuntu oracular/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 222s Get:116 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 222s Get:117 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 222s Get:118 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 222s Get:119 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpango-1.0-0 ppc64el 1.54.0+ds-1 [270 kB] 222s Get:120 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangoft2-1.0-0 ppc64el 1.54.0+ds-1 [49.9 kB] 222s Get:121 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangocairo-1.0-0 ppc64el 1.54.0+ds-1 [30.4 kB] 222s Get:122 http://ftpmaster.internal/ubuntu oracular/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 222s Get:123 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 222s Get:124 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 222s Get:125 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-base-core ppc64el 4.4.1-1 [28.9 MB] 223s Get:126 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB] 223s Get:127 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-dnacopy ppc64el 1.76.0-1 [387 kB] 224s Get:128 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cnvkit all 0.9.10-2 [20.5 MB] 224s Get:129 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-xopen all 1.7.0-2 [17.0 kB] 224s Get:130 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-dnaio ppc64el 1.2.0-2build1 [90.1 kB] 224s Get:131 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cutadapt ppc64el 4.7-2 [209 kB] 224s Get:132 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cutadapt all 4.7-2 [6766 B] 224s Get:133 http://ftpmaster.internal/ubuntu oracular/universe ppc64el diamond-aligner ppc64el 2.1.9-1 [1959 kB] 225s Get:134 http://ftpmaster.internal/ubuntu oracular/universe ppc64el emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB] 228s Get:135 http://ftpmaster.internal/ubuntu oracular/universe ppc64el emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB] 229s Get:136 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 229s Get:137 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 229s Get:138 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 229s Get:139 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgd-perl ppc64el 2.78-1build3 [129 kB] 229s Get:140 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdevel-symdump-perl all 2.18-5 [12.6 kB] 229s Get:141 http://ftpmaster.internal/ubuntu oracular/main ppc64el liburi-perl all 5.28-1 [88.1 kB] 229s Get:142 http://ftpmaster.internal/ubuntu oracular/main ppc64el libencode-locale-perl all 1.05-3 [11.6 kB] 229s Get:143 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtimedate-perl all 2.3300-2 [34.0 kB] 229s Get:144 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-date-perl all 6.06-1 [10.2 kB] 229s Get:145 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfile-listing-perl all 6.16-1 [11.3 kB] 229s Get:146 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-tagset-perl all 3.24-1 [14.1 kB] 229s Get:147 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-parser-perl ppc64el 3.82-1 [91.2 kB] 229s Get:148 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-tree-perl all 5.07-3 [200 kB] 229s Get:149 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclone-perl ppc64el 0.46-1build3 [11.2 kB] 229s Get:150 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-html-perl all 1.004-3 [15.9 kB] 229s Get:151 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 229s Get:152 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 229s Get:153 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-cookies-perl all 6.11-1 [18.2 kB] 229s Get:154 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-negotiate-perl all 6.01-2 [12.4 kB] 229s Get:155 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-openssl-defaults ppc64el 7build3 [6628 B] 229s Get:156 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnet-ssleay-perl ppc64el 1.94-1build4 [327 kB] 229s Get:157 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-socket-ssl-perl all 2.085-1 [195 kB] 229s Get:158 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnet-http-perl all 6.23-1 [22.3 kB] 229s Get:159 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblwp-protocol-https-perl all 6.14-1 [9040 B] 229s Get:160 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtry-tiny-perl all 0.31-2 [20.8 kB] 229s Get:161 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwww-robotrules-perl all 6.02-1 [12.6 kB] 229s Get:162 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwww-perl all 6.77-1 [138 kB] 229s Get:163 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapache2-mod-perl2 ppc64el 2.0.13-1build5 [813 kB] 229s Get:164 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdbi-perl ppc64el 1.643-4build3 [729 kB] 229s Get:165 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libapache-dbi-perl all 1.12-3 [40.5 kB] 229s Get:166 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB] 229s Get:167 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcgi-pm-perl all 4.66-1 [185 kB] 229s Get:168 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-gff-perl all 1.7.4-1 [273 kB] 229s Get:169 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpq5 ppc64el 16.3-1 [171 kB] 229s Get:170 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdbd-pg-perl ppc64el 3.18.0-1build3 [208 kB] 229s Get:171 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdbd-sqlite3-perl ppc64el 1.74-1build3 [170 kB] 229s Get:172 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] 229s Get:173 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-graphics-perl all 2.40-6 [601 kB] 229s Get:174 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-coordinate-perl all 1.7.1-4 [56.4 kB] 229s Get:175 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libcgi-session-perl all 4.48-4 [108 kB] 229s Get:176 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 229s Get:177 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexporter-tiny-perl all 1.006002-1 [36.8 kB] 229s Get:178 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblist-moreutils-xs-perl ppc64el 0.430-4 [44.5 kB] 229s Get:179 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblist-moreutils-perl all 0.430-2 [38.2 kB] 229s Get:180 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libstatistics-descriptive-perl all 3.0801-1 [58.7 kB] 229s Get:181 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-daemon-perl all 6.16-1 [22.4 kB] 229s Get:182 http://ftpmaster.internal/ubuntu oracular/main ppc64el libterm-readkey-perl ppc64el 2.38-2build4 [24.7 kB] 229s Get:183 http://ftpmaster.internal/ubuntu oracular/main ppc64el sqlite3 ppc64el 3.46.0-1 [171 kB] 229s Get:184 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prototype all 1.7.3-1 [44.8 kB] 229s Get:185 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-scriptaculous all 1.9.0-3 [92.6 kB] 229s Get:186 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-perl ppc64el 7.170-2build6 [368 kB] 229s Get:187 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-cachedns-perl all 0.08-3 [7216 B] 229s Get:188 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcommon-sense-perl ppc64el 3.75-3build3 [20.4 kB] 229s Get:189 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-http-perl all 2.25-2 [30.3 kB] 230s Get:190 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libstring-approx-perl ppc64el 3.28-2build4 [36.9 kB] 230s Get:191 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 230s Get:192 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-sax-base-perl all 1.09-3 [18.9 kB] 230s Get:193 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 230s Get:194 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-libxml-perl ppc64el 2.0207+dfsg+really+2.0134-2 [309 kB] 230s Get:195 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-simple-perl all 2.25-2 [64.1 kB] 230s Get:196 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libvm-ec2-perl all 1.28-4 [766 kB] 230s Get:197 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gbrowse all 2.56+dfsg-12build3 [2181 kB] 230s Get:198 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-13-base ppc64el 13.2.0-23ubuntu4 [49.0 kB] 230s Get:199 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gff2aplot ppc64el 2.0-15 [258 kB] 230s Get:200 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gff2ps all 0.98l-6 [63.1 kB] 230s Get:201 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgclib3t64 ppc64el 0.12.7+ds-5ubuntu3 [199 kB] 230s Get:202 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el gffread ppc64el 0.12.7-6 [68.4 kB] 230s Get:203 http://ftpmaster.internal/ubuntu oracular/universe ppc64el htslib-test all 1.20+ds-1 [1145 kB] 230s Get:204 http://ftpmaster.internal/ubuntu oracular/main ppc64el javascript-common all 11+nmu1 [5936 B] 230s Get:205 http://ftpmaster.internal/ubuntu oracular/main ppc64el libasan8 ppc64el 14.1.0-1ubuntu1 [2971 kB] 231s Get:206 http://ftpmaster.internal/ubuntu oracular/main ppc64el libatomic1 ppc64el 14.1.0-1ubuntu1 [10.7 kB] 231s Get:207 http://ftpmaster.internal/ubuntu oracular/main ppc64el libitm1 ppc64el 14.1.0-1ubuntu1 [32.4 kB] 231s Get:208 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblsan0 ppc64el 14.1.0-1ubuntu1 [1328 kB] 231s Get:209 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtsan2 ppc64el 14.1.0-1ubuntu1 [2708 kB] 231s Get:210 http://ftpmaster.internal/ubuntu oracular/main ppc64el libubsan1 ppc64el 14.1.0-1ubuntu1 [1196 kB] 231s Get:211 http://ftpmaster.internal/ubuntu oracular/main ppc64el libquadmath0 ppc64el 14.1.0-1ubuntu1 [158 kB] 231s Get:212 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcc-13-dev ppc64el 13.2.0-23ubuntu4 [1580 kB] 231s Get:213 http://ftpmaster.internal/ubuntu oracular/main ppc64el libstdc++-13-dev ppc64el 13.2.0-23ubuntu4 [2512 kB] 231s Get:214 http://ftpmaster.internal/ubuntu oracular/main ppc64el libboost1.83-dev ppc64el 1.83.0-3ubuntu1 [10.7 MB] 232s Get:215 http://ftpmaster.internal/ubuntu oracular/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B] 232s Get:216 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 232s Get:217 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 232s Get:218 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 232s Get:219 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB] 232s Get:220 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB] 232s Get:221 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 232s Get:222 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 232s Get:223 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 232s Get:224 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 232s Get:225 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 232s Get:226 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 232s Get:227 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 232s Get:228 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblua5.1-0 ppc64el 5.1.5-9build2 [157 kB] 232s Get:229 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.8-1 [267 kB] 232s Get:230 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedx509-1t64 ppc64el 2.28.8-1 [51.7 kB] 232s Get:231 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedtls14t64 ppc64el 2.28.8-1 [90.6 kB] 232s Get:232 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtre5 ppc64el 0.8.0-7 [56.1 kB] 232s Get:233 http://ftpmaster.internal/ubuntu oracular/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] 232s Get:234 http://ftpmaster.internal/ubuntu oracular/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build2 [13.5 MB] 233s Get:235 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB] 233s Get:236 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 233s Get:237 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB] 233s Get:238 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bowtie2 ppc64el 2.5.3-1 [1371 kB] 233s Get:239 http://ftpmaster.internal/ubuntu oracular/universe ppc64el samtools ppc64el 1.20-3 [676 kB] 233s Get:240 http://ftpmaster.internal/ubuntu oracular/universe ppc64el optimir all 1.2-1 [1128 kB] 233s Get:241 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc-data all 3.1.3-2build2 [78.3 kB] 233s Get:242 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc ppc64el 3.1.3+ds-3build1 [22.5 MB] 234s Get:243 http://ftpmaster.internal/ubuntu oracular/universe ppc64el proteinortho ppc64el 6.3.1+dfsg-1 [374 kB] 234s Get:244 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-argcomplete all 3.4.0-1 [34.6 kB] 234s Get:245 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-argh all 0.31.2-1 [26.9 kB] 234s Get:246 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-simplejson ppc64el 3.19.2-1build2 [60.6 kB] 234s Get:247 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-gffutils all 0.13-1 [1081 kB] 234s Get:248 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pybedtools ppc64el 0.10.0-1 [12.3 MB] 234s Get:249 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biobase ppc64el 2.62.0-1 [2138 kB] 234s Get:250 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB] 234s Get:251 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB] 235s Get:252 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbi all 1.2.3-1 [853 kB] 235s Get:253 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB] 235s Get:254 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB] 235s Get:255 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rlang ppc64el 1.1.4-1 [1742 kB] 235s Get:256 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB] 235s Get:257 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB] 235s Get:258 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 235s Get:259 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 235s Get:260 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB] 235s Get:261 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB] 235s Get:262 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB] 235s Get:263 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB] 235s Get:264 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 235s Get:265 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB] 235s Get:266 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB] 235s Get:267 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rsqlite ppc64el 2.3.7-1 [1541 kB] 235s Get:268 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-curl ppc64el 5.2.1+dfsg-1 [182 kB] 235s Get:269 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB] 235s Get:270 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB] 235s Get:271 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB] 235s Get:272 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB] 235s Get:273 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2build2 [406 kB] 235s Get:274 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 235s Get:275 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB] 235s Get:276 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-png ppc64el 0.1-8-1build2 [44.3 kB] 235s Get:277 http://ftpmaster.internal/ubuntu oracular/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu2 [902 kB] 235s Get:278 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 235s Get:279 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB] 235s Get:280 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB] 235s Get:281 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1build2 [797 kB] 235s Get:282 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 236s Get:283 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 236s Get:284 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB] 236s Get:285 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biostrings ppc64el 2.70.3+dfsg-1 [13.7 MB] 236s Get:286 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 236s Get:287 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 237s Get:288 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB] 237s Get:289 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lazyeval ppc64el 0.2.2-1build1 [144 kB] 237s Get:290 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 237s Get:291 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB] 237s Get:292 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 237s Get:293 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB] 237s Get:294 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB] 237s Get:295 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 237s Get:296 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB] 237s Get:297 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB] 237s Get:298 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyselect ppc64el 1.2.1+dfsg-1 [222 kB] 237s Get:299 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB] 237s Get:300 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB] 237s Get:301 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB] 237s Get:302 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB] 237s Get:303 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB] 237s Get:304 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 238s Get:305 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-filelock ppc64el 1.0.3-1 [30.3 kB] 238s Get:306 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 238s Get:307 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 238s Get:308 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-formatr all 1.14-2 [152 kB] 238s Get:309 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB] 238s Get:310 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 238s Get:311 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 238s Get:312 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB] 238s Get:313 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-codetools all 0.2-20-1 [90.5 kB] 238s Get:314 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B] 238s Get:315 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB] 238s Get:316 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xml ppc64el 3.99-0.17-1 [1754 kB] 238s Get:317 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB] 238s Get:318 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB] 238s Get:319 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB] 238s Get:320 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-digest ppc64el 0.6.36-1 [221 kB] 238s Get:321 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 238s Get:322 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xml2 ppc64el 1.3.6-1 [328 kB] 238s Get:323 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 238s Get:324 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-farver ppc64el 2.1.2-1 [1389 kB] 238s Get:325 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-labeling all 0.4.3-1 [62.1 kB] 238s Get:326 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-colorspace ppc64el 2.1-0+dfsg-1 [1542 kB] 238s Get:327 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-munsell all 0.5.1-1 [213 kB] 238s Get:328 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 238s Get:329 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB] 238s Get:330 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-scales all 1.3.0-1 [603 kB] 239s Get:331 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gtable all 0.3.5+dfsg-1 [192 kB] 239s Get:332 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-isoband ppc64el 0.2.7-1 [1486 kB] 239s Get:333 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mass ppc64el 7.3-61-1 [1115 kB] 239s Get:334 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB] 239s Get:335 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nlme ppc64el 3.1.165-1 [2328 kB] 239s Get:336 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrix ppc64el 1.7-0-3 [4520 kB] 239s Get:337 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mgcv ppc64el 1.9-1-1 [3393 kB] 239s Get:338 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 239s Get:339 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cluster ppc64el 2.1.6-1build1 [569 kB] 239s Get:340 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-survival ppc64el 3.7-0-1 [6309 kB] 240s Get:341 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpart ppc64el 4.1.23-1build1 [673 kB] 240s Get:342 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nnet ppc64el 7.3-19-2build1 [119 kB] 240s Get:343 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-foreign ppc64el 0.8.87-1 [254 kB] 240s Get:344 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gridextra all 2.3-3build1 [1024 kB] 240s Get:345 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-data.table ppc64el 1.15.4+dfsg-2.2 [1926 kB] 240s Get:346 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-evaluate all 0.24.0-1 [93.5 kB] 240s Get:347 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xfun ppc64el 0.45+dfsg-1 [517 kB] 240s Get:348 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-highr all 0.11+dfsg-1 [38.5 kB] 240s Get:349 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-yaml ppc64el 2.3.8-2 [122 kB] 240s Get:350 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 240s Get:351 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-knitr all 1.47+dfsg-1 [911 kB] 240s Get:352 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-backports ppc64el 1.4.1-1 [101 kB] 240s Get:353 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-checkmate ppc64el 2.3.1-1 [721 kB] 240s Get:354 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB] 240s Get:355 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltools ppc64el 0.5.8.1-1 [373 kB] 240s Get:356 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 240s Get:357 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fs ppc64el 1.6.4+dfsg-1 [248 kB] 240s Get:358 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sass ppc64el 0.4.9+dfsg-1 [1034 kB] 240s Get:359 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 241s Get:360 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB] 241s Get:361 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tinytex all 0.51-1 [145 kB] 241s Get:362 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-modernizr all 3.13.0-0.1 [101 kB] 241s Get:363 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-littler ppc64el 0.3.20-1 [97.4 kB] 241s Get:364 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 241s Get:365 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB] 241s Get:366 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB] 241s Get:367 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-promises ppc64el 1.3.0+dfsg-1 [289 kB] 241s Get:368 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httpuv ppc64el 1.6.15+dfsg-1 [521 kB] 241s Get:369 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB] 241s Get:370 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB] 241s Get:371 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB] 241s Get:372 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 241s Get:373 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 241s Get:374 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 241s Get:375 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 241s Get:376 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rstudioapi all 0.16.0-1 [287 kB] 241s Get:377 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltable all 2.4.2-1 [381 kB] 241s Get:378 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridis all 0.6.5-1 [2770 kB] 241s Get:379 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-formula all 1.2-5-1 [158 kB] 241s Get:380 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-chron ppc64el 2.3-61-2 [187 kB] 241s Get:381 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jpeg ppc64el 0.1-10-1 [37.0 kB] 241s Get:382 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-deldir ppc64el 2.0-4-1build1 [273 kB] 241s Get:383 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcppeigen ppc64el 0.3.4.0.0-1build1 [1476 kB] 241s Get:384 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-interp ppc64el 1.1-6-1 [1492 kB] 241s Get:385 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-latticeextra all 0.6-30-1 [2198 kB] 241s Get:386 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-acepack ppc64el 1.4.2-1 [69.8 kB] 241s Get:387 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-hmisc ppc64el 5.1-3-1 [3558 kB] 242s Get:388 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 242s Get:389 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrixstats ppc64el 1.3.0-1 [546 kB] 242s Get:390 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 242s Get:391 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB] 242s Get:392 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-s4arrays ppc64el 1.2.0+dfsg-1 [502 kB] 242s Get:393 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-sparsearray ppc64el 1.2.4+dfsg-1 [1222 kB] 242s Get:394 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-delayedarray ppc64el 0.28.0+dfsg-1 [1786 kB] 242s Get:395 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 242s Get:396 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-3build2 [1552 kB] 242s Get:397 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1build2 [3815 kB] 242s Get:398 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicalignments ppc64el 1.38.2-1 [2139 kB] 242s Get:399 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rjson ppc64el 0.2.21-1 [144 kB] 242s Get:400 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-restfulr ppc64el 0.0.15-1 [380 kB] 242s Get:401 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rtracklayer ppc64el 1.62.0-1 [5148 kB] 242s Get:402 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 242s Get:403 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-bsgenome all 1.70.2-1 [6975 kB] 243s Get:404 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-variantannotation ppc64el 1.48.1-1build2 [3657 kB] 243s Get:405 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-protgenerics all 1.34.0-1 [225 kB] 243s Get:406 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 244s Get:407 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biovizbase ppc64el 1.50.0-1 [2666 kB] 244s Get:408 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 244s Get:409 http://ftpmaster.internal/ubuntu oracular/universe ppc64el trinityrnaseq-examples ppc64el 2.15.1+dfsg-5build1 [299 MB] 271s Get:410 http://ftpmaster.internal/ubuntu oracular/universe ppc64el genometools-common all 1.6.5+ds-2.2 [194 kB] 271s Get:411 http://ftpmaster.internal/ubuntu oracular/universe ppc64el seqan-apps ppc64el 2.4.0+dfsg-16 [12.7 MB] 273s Preconfiguring packages ... 273s Fetched 867 MB in 56s (15.5 MB/s) 273s Selecting previously unselected package libapr1t64:ppc64el. 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72746 files and directories currently installed.) 273s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_ppc64el.deb ... 273s Unpacking libapr1t64:ppc64el (1.7.2-3.2) ... 273s Selecting previously unselected package libaprutil1t64:ppc64el. 273s Preparing to unpack .../001-libaprutil1t64_1.6.3-2ubuntu1_ppc64el.deb ... 273s Unpacking libaprutil1t64:ppc64el (1.6.3-2ubuntu1) ... 273s Selecting previously unselected package libaprutil1-dbd-sqlite3:ppc64el. 273s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-2ubuntu1_ppc64el.deb ... 273s Unpacking libaprutil1-dbd-sqlite3:ppc64el (1.6.3-2ubuntu1) ... 273s Selecting previously unselected package libaprutil1-ldap:ppc64el. 273s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-2ubuntu1_ppc64el.deb ... 273s Unpacking libaprutil1-ldap:ppc64el (1.6.3-2ubuntu1) ... 273s Selecting previously unselected package liblua5.4-0:ppc64el. 273s Preparing to unpack .../004-liblua5.4-0_5.4.6-3build2_ppc64el.deb ... 273s Unpacking liblua5.4-0:ppc64el (5.4.6-3build2) ... 273s Selecting previously unselected package apache2-bin. 273s Preparing to unpack .../005-apache2-bin_2.4.59-2ubuntu2_ppc64el.deb ... 273s Unpacking apache2-bin (2.4.59-2ubuntu2) ... 273s Selecting previously unselected package apache2-data. 273s Preparing to unpack .../006-apache2-data_2.4.59-2ubuntu2_all.deb ... 273s Unpacking apache2-data (2.4.59-2ubuntu2) ... 273s Selecting previously unselected package apache2-utils. 273s Preparing to unpack .../007-apache2-utils_2.4.59-2ubuntu2_ppc64el.deb ... 273s Unpacking apache2-utils (2.4.59-2ubuntu2) ... 273s Selecting previously unselected package apache2. 273s Preparing to unpack .../008-apache2_2.4.59-2ubuntu2_ppc64el.deb ... 273s Unpacking apache2 (2.4.59-2ubuntu2) ... 273s Selecting previously unselected package sgml-base. 273s Preparing to unpack .../009-sgml-base_1.31_all.deb ... 273s Unpacking sgml-base (1.31) ... 273s Selecting previously unselected package pigz. 273s Preparing to unpack .../010-pigz_2.8-1_ppc64el.deb ... 273s Unpacking pigz (2.8-1) ... 273s Selecting previously unselected package augustus-doc. 273s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build5_all.deb ... 273s Unpacking augustus-doc (3.5.0+dfsg-4build5) ... 274s Selecting previously unselected package bedtools-test. 274s Preparing to unpack .../012-bedtools-test_2.31.1+dfsg-2_all.deb ... 274s Unpacking bedtools-test (2.31.1+dfsg-2) ... 274s Selecting previously unselected package libio-string-perl. 274s Preparing to unpack .../013-libio-string-perl_1.08-4_all.deb ... 274s Unpacking libio-string-perl (1.08-4) ... 275s Selecting previously unselected package libdata-stag-perl. 275s Preparing to unpack .../014-libdata-stag-perl_0.14-3_all.deb ... 275s Unpacking libdata-stag-perl (0.14-3) ... 275s Selecting previously unselected package libbio-perl-perl. 275s Preparing to unpack .../015-libbio-perl-perl_1.7.8-1_all.deb ... 275s Unpacking libbio-perl-perl (1.7.8-1) ... 275s Selecting previously unselected package libclass-data-inheritable-perl. 275s Preparing to unpack .../016-libclass-data-inheritable-perl_0.08-3_all.deb ... 275s Unpacking libclass-data-inheritable-perl (0.08-3) ... 275s Selecting previously unselected package libdevel-stacktrace-perl. 275s Preparing to unpack .../017-libdevel-stacktrace-perl_2.0500-1_all.deb ... 275s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 275s Selecting previously unselected package libexception-class-perl. 275s Preparing to unpack .../018-libexception-class-perl_1.45-1_all.deb ... 275s Unpacking libexception-class-perl (1.45-1) ... 275s Selecting previously unselected package libtest-deep-perl. 275s Preparing to unpack .../019-libtest-deep-perl_1.204-1_all.deb ... 275s Unpacking libtest-deep-perl (1.204-1) ... 275s Selecting previously unselected package libcapture-tiny-perl. 275s Preparing to unpack .../020-libcapture-tiny-perl_0.48-2_all.deb ... 275s Unpacking libcapture-tiny-perl (0.48-2) ... 275s Selecting previously unselected package libalgorithm-diff-perl. 275s Preparing to unpack .../021-libalgorithm-diff-perl_1.201-1_all.deb ... 275s Unpacking libalgorithm-diff-perl (1.201-1) ... 275s Selecting previously unselected package libtext-diff-perl. 275s Preparing to unpack .../022-libtext-diff-perl_1.45-2_all.deb ... 275s Unpacking libtext-diff-perl (1.45-2) ... 275s Selecting previously unselected package libtest-differences-perl. 275s Preparing to unpack .../023-libtest-differences-perl_0.71-1_all.deb ... 275s Unpacking libtest-differences-perl (0.71-1) ... 275s Selecting previously unselected package libsub-uplevel-perl. 275s Preparing to unpack .../024-libsub-uplevel-perl_0.2800-3_all.deb ... 275s Unpacking libsub-uplevel-perl (0.2800-3) ... 275s Selecting previously unselected package libtest-exception-perl. 275s Preparing to unpack .../025-libtest-exception-perl_0.43-3_all.deb ... 275s Unpacking libtest-exception-perl (0.43-3) ... 275s Selecting previously unselected package libtest-warn-perl. 275s Preparing to unpack .../026-libtest-warn-perl_0.37-2_all.deb ... 275s Unpacking libtest-warn-perl (0.37-2) ... 275s Selecting previously unselected package libtest-most-perl. 275s Preparing to unpack .../027-libtest-most-perl_0.38-1_all.deb ... 275s Unpacking libtest-most-perl (0.38-1) ... 275s Selecting previously unselected package bioperl. 275s Preparing to unpack .../028-bioperl_1.7.8-1_all.deb ... 275s Unpacking bioperl (1.7.8-1) ... 275s Selecting previously unselected package libtcl8.6:ppc64el. 275s Preparing to unpack .../029-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 275s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 275s Selecting previously unselected package libxrender1:ppc64el. 275s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 275s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 275s Selecting previously unselected package libxft2:ppc64el. 275s Preparing to unpack .../031-libxft2_2.3.6-1build1_ppc64el.deb ... 275s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 275s Selecting previously unselected package x11-common. 275s Preparing to unpack .../032-x11-common_1%3a7.7+23ubuntu3_all.deb ... 275s Unpacking x11-common (1:7.7+23ubuntu3) ... 275s Selecting previously unselected package libxss1:ppc64el. 275s Preparing to unpack .../033-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 275s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 275s Selecting previously unselected package libtk8.6:ppc64el. 275s Preparing to unpack .../034-libtk8.6_8.6.14-1build1_ppc64el.deb ... 275s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 275s Selecting previously unselected package tk8.6-blt2.5. 275s Preparing to unpack .../035-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 275s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 275s Selecting previously unselected package blt. 275s Preparing to unpack .../036-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 275s Unpacking blt (2.5.3+dfsg-7build1) ... 275s Selecting previously unselected package libblas3:ppc64el. 275s Preparing to unpack .../037-libblas3_3.12.0-3build1_ppc64el.deb ... 275s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 275s Selecting previously unselected package libgfortran5:ppc64el. 275s Preparing to unpack .../038-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 275s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 275s Selecting previously unselected package liblapack3:ppc64el. 275s Preparing to unpack .../039-liblapack3_3.12.0-3build1_ppc64el.deb ... 275s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 275s Selecting previously unselected package python3-numpy. 275s Preparing to unpack .../040-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 275s Unpacking python3-numpy (1:1.26.4+ds-10) ... 276s Selecting previously unselected package python3-tk:ppc64el. 276s Preparing to unpack .../041-python3-tk_3.12.3-0ubuntu1_ppc64el.deb ... 276s Unpacking python3-tk:ppc64el (3.12.3-0ubuntu1) ... 276s Selecting previously unselected package python3-pil.imagetk:ppc64el. 276s Preparing to unpack .../042-python3-pil.imagetk_10.3.0-2_ppc64el.deb ... 276s Unpacking python3-pil.imagetk:ppc64el (10.3.0-2) ... 276s Selecting previously unselected package libgomp1:ppc64el. 276s Preparing to unpack .../043-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ... 276s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ... 276s Selecting previously unselected package libimagequant0:ppc64el. 276s Preparing to unpack .../044-libimagequant0_2.18.0-1build1_ppc64el.deb ... 276s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 276s Selecting previously unselected package liblcms2-2:ppc64el. 276s Preparing to unpack .../045-liblcms2-2_2.14-2build1_ppc64el.deb ... 276s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 276s Selecting previously unselected package libopenjp2-7:ppc64el. 276s Preparing to unpack .../046-libopenjp2-7_2.5.0-2build3_ppc64el.deb ... 276s Unpacking libopenjp2-7:ppc64el (2.5.0-2build3) ... 276s Selecting previously unselected package libgraphite2-3:ppc64el. 276s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_ppc64el.deb ... 276s Unpacking libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 276s Selecting previously unselected package libharfbuzz0b:ppc64el. 276s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 276s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 276s Selecting previously unselected package libraqm0:ppc64el. 276s Preparing to unpack .../049-libraqm0_0.10.1-1build1_ppc64el.deb ... 276s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 276s Selecting previously unselected package libwebpdemux2:ppc64el. 276s Preparing to unpack .../050-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 276s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 276s Selecting previously unselected package libwebpmux3:ppc64el. 276s Preparing to unpack .../051-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 276s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 276s Selecting previously unselected package python3-pil:ppc64el. 276s Preparing to unpack .../052-python3-pil_10.3.0-2_ppc64el.deb ... 276s Unpacking python3-pil:ppc64el (10.3.0-2) ... 276s Selecting previously unselected package libpixman-1-0:ppc64el. 276s Preparing to unpack .../053-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 276s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 276s Selecting previously unselected package libxcb-render0:ppc64el. 276s Preparing to unpack .../054-libxcb-render0_1.17.0-2_ppc64el.deb ... 276s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 276s Selecting previously unselected package libxcb-shm0:ppc64el. 276s Preparing to unpack .../055-libxcb-shm0_1.17.0-2_ppc64el.deb ... 276s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 276s Selecting previously unselected package libcairo2:ppc64el. 276s Preparing to unpack .../056-libcairo2_1.18.0-3build1_ppc64el.deb ... 276s Unpacking libcairo2:ppc64el (1.18.0-3build1) ... 276s Selecting previously unselected package python3-cairo. 276s Preparing to unpack .../057-python3-cairo_1.26.1-1_ppc64el.deb ... 276s Unpacking python3-cairo (1.26.1-1) ... 276s Selecting previously unselected package python3-freetype. 276s Preparing to unpack .../058-python3-freetype_2.4.0-2_all.deb ... 276s Unpacking python3-freetype (2.4.0-2) ... 276s Selecting previously unselected package python3-rlpycairo. 276s Preparing to unpack .../059-python3-rlpycairo_0.3.0-3_all.deb ... 276s Unpacking python3-rlpycairo (0.3.0-3) ... 276s Selecting previously unselected package libfontenc1:ppc64el. 276s Preparing to unpack .../060-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 276s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 276s Selecting previously unselected package xfonts-encodings. 276s Preparing to unpack .../061-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 276s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 276s Selecting previously unselected package xfonts-utils. 276s Preparing to unpack .../062-xfonts-utils_1%3a7.7+6build3_ppc64el.deb ... 276s Unpacking xfonts-utils (1:7.7+6build3) ... 276s Selecting previously unselected package fonts-urw-base35. 276s Preparing to unpack .../063-fonts-urw-base35_20200910-8_all.deb ... 276s Unpacking fonts-urw-base35 (20200910-8) ... 276s Selecting previously unselected package python3-reportlab. 276s Preparing to unpack .../064-python3-reportlab_4.2.2-1_all.deb ... 276s Unpacking python3-reportlab (4.2.2-1) ... 276s Selecting previously unselected package xml-core. 276s Preparing to unpack .../065-xml-core_0.19_all.deb ... 276s Unpacking xml-core (0.19) ... 276s Selecting previously unselected package w3c-sgml-lib. 276s Preparing to unpack .../066-w3c-sgml-lib_1.3-3_all.deb ... 276s Unpacking w3c-sgml-lib (1.3-3) ... 276s Selecting previously unselected package python3-biopython. 276s Preparing to unpack .../067-python3-biopython_1.83+dfsg1-3_ppc64el.deb ... 276s Unpacking python3-biopython (1.83+dfsg1-3) ... 277s Selecting previously unselected package libjs-jquery. 277s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 277s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 277s Selecting previously unselected package libjs-jquery-ui. 277s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 277s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 277s Selecting previously unselected package fonts-lyx. 277s Preparing to unpack .../070-fonts-lyx_2.4.1-1_all.deb ... 277s Unpacking fonts-lyx (2.4.1-1) ... 277s Selecting previously unselected package python-matplotlib-data. 277s Preparing to unpack .../071-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 277s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 277s Selecting previously unselected package python3-dateutil. 277s Preparing to unpack .../072-python3-dateutil_2.9.0-2_all.deb ... 277s Unpacking python3-dateutil (2.9.0-2) ... 277s Selecting previously unselected package python3-contourpy. 277s Preparing to unpack .../073-python3-contourpy_1.0.7-3_ppc64el.deb ... 277s Unpacking python3-contourpy (1.0.7-3) ... 277s Selecting previously unselected package python3-cycler. 277s Preparing to unpack .../074-python3-cycler_0.12.1-1_all.deb ... 277s Unpacking python3-cycler (0.12.1-1) ... 277s Selecting previously unselected package python3-brotli. 277s Preparing to unpack .../075-python3-brotli_1.1.0-2build2_ppc64el.deb ... 277s Unpacking python3-brotli (1.1.0-2build2) ... 277s Selecting previously unselected package python3-decorator. 277s Preparing to unpack .../076-python3-decorator_5.1.1-5_all.deb ... 277s Unpacking python3-decorator (5.1.1-5) ... 277s Selecting previously unselected package liblbfgsb0:ppc64el. 277s Preparing to unpack .../077-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 277s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 277s Selecting previously unselected package python3-scipy. 277s Preparing to unpack .../078-python3-scipy_1.12.0-2_ppc64el.deb ... 277s Unpacking python3-scipy (1.12.0-2) ... 278s Selecting previously unselected package python3-ufolib2. 278s Preparing to unpack .../079-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 278s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 278s Selecting previously unselected package python3-mpmath. 278s Preparing to unpack .../080-python3-mpmath_1.3.0-1_all.deb ... 278s Unpacking python3-mpmath (1.3.0-1) ... 278s Selecting previously unselected package python3-sympy. 278s Preparing to unpack .../081-python3-sympy_1.12-8_all.deb ... 278s Unpacking python3-sympy (1.12-8) ... 278s Selecting previously unselected package python3-appdirs. 278s Preparing to unpack .../082-python3-appdirs_1.4.4-4_all.deb ... 278s Unpacking python3-appdirs (1.4.4-4) ... 278s Selecting previously unselected package python3-fs. 278s Preparing to unpack .../083-python3-fs_2.4.16-4_all.deb ... 278s Unpacking python3-fs (2.4.16-4) ... 278s Selecting previously unselected package libxslt1.1:ppc64el. 278s Preparing to unpack .../084-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 278s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 278s Selecting previously unselected package python3-lxml:ppc64el. 278s Preparing to unpack .../085-python3-lxml_5.2.1-1_ppc64el.deb ... 278s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 278s Selecting previously unselected package python3-lz4. 278s Preparing to unpack .../086-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 278s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 278s Selecting previously unselected package python3-unicodedata2. 278s Preparing to unpack .../087-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 278s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 278s Selecting previously unselected package unicode-data. 278s Preparing to unpack .../088-unicode-data_15.1.0-1_all.deb ... 278s Unpacking unicode-data (15.1.0-1) ... 279s Selecting previously unselected package python3-fonttools. 279s Preparing to unpack .../089-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 279s Unpacking python3-fonttools (4.46.0-1build2) ... 279s Selecting previously unselected package python3-kiwisolver. 279s Preparing to unpack .../090-python3-kiwisolver_1.4.5-1_ppc64el.deb ... 279s Unpacking python3-kiwisolver (1.4.5-1) ... 279s Selecting previously unselected package python3-packaging. 279s Preparing to unpack .../091-python3-packaging_24.0-1_all.deb ... 279s Unpacking python3-packaging (24.0-1) ... 279s Selecting previously unselected package libqhull-r8.0:ppc64el. 279s Preparing to unpack .../092-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 279s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 279s Selecting previously unselected package python3-matplotlib. 279s Preparing to unpack .../093-python3-matplotlib_3.6.3-2ubuntu1_ppc64el.deb ... 279s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 279s Selecting previously unselected package python3-pandas-lib:ppc64el. 279s Preparing to unpack .../094-python3-pandas-lib_2.1.4+dfsg-8_ppc64el.deb ... 279s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 279s Selecting previously unselected package python3-pandas. 279s Preparing to unpack .../095-python3-pandas_2.1.4+dfsg-8_all.deb ... 279s Unpacking python3-pandas (2.1.4+dfsg-8) ... 279s Selecting previously unselected package python3-joblib. 279s Preparing to unpack .../096-python3-joblib_1.3.2-2_all.deb ... 279s Unpacking python3-joblib (1.3.2-2) ... 279s Selecting previously unselected package python3-networkx. 279s Preparing to unpack .../097-python3-networkx_3.2.1-4ubuntu1_all.deb ... 279s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 280s Selecting previously unselected package python3-pomegranate. 280s Preparing to unpack .../098-python3-pomegranate_0.14.8-6_ppc64el.deb ... 280s Unpacking python3-pomegranate (0.14.8-6) ... 280s Selecting previously unselected package python3-zipp. 280s Preparing to unpack .../099-python3-zipp_3.19.2-2_all.deb ... 280s Unpacking python3-zipp (3.19.2-2) ... 281s Selecting previously unselected package python3-importlib-metadata. 281s Preparing to unpack .../100-python3-importlib-metadata_8.0.0-2_all.deb ... 281s Unpacking python3-importlib-metadata (8.0.0-2) ... 281s Selecting previously unselected package python3-pyfaidx. 281s Preparing to unpack .../101-python3-pyfaidx_0.8.1.1-2_all.deb ... 281s Unpacking python3-pyfaidx (0.8.1.1-2) ... 281s Selecting previously unselected package libhtscodecs2:ppc64el. 281s Preparing to unpack .../102-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 281s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 281s Selecting previously unselected package libhts3t64:ppc64el. 281s Preparing to unpack .../103-libhts3t64_1.20+ds-1_ppc64el.deb ... 281s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 281s Selecting previously unselected package python3-pysam. 281s Preparing to unpack .../104-python3-pysam_0.22.1+ds-2_ppc64el.deb ... 281s Unpacking python3-pysam (0.22.1+ds-2) ... 281s Selecting previously unselected package python3-threadpoolctl. 281s Preparing to unpack .../105-python3-threadpoolctl_3.1.0-1_all.deb ... 281s Unpacking python3-threadpoolctl (3.1.0-1) ... 281s Selecting previously unselected package python3-sklearn-lib:ppc64el. 281s Preparing to unpack .../106-python3-sklearn-lib_1.4.2+dfsg-3_ppc64el.deb ... 281s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-3) ... 281s Selecting previously unselected package python3-sklearn. 281s Preparing to unpack .../107-python3-sklearn_1.4.2+dfsg-3_all.deb ... 281s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 281s Selecting previously unselected package zip. 281s Preparing to unpack .../108-zip_3.0-13build1_ppc64el.deb ... 281s Unpacking zip (3.0-13build1) ... 281s Selecting previously unselected package unzip. 281s Preparing to unpack .../109-unzip_6.0-28ubuntu5_ppc64el.deb ... 281s Unpacking unzip (6.0-28ubuntu5) ... 281s Selecting previously unselected package libpaper1:ppc64el. 281s Preparing to unpack .../110-libpaper1_1.1.29build1_ppc64el.deb ... 281s Unpacking libpaper1:ppc64el (1.1.29build1) ... 281s Selecting previously unselected package libpaper-utils. 281s Preparing to unpack .../111-libpaper-utils_1.1.29build1_ppc64el.deb ... 281s Unpacking libpaper-utils (1.1.29build1) ... 281s Selecting previously unselected package xdg-utils. 281s Preparing to unpack .../112-xdg-utils_1.2.1-0ubuntu1_all.deb ... 281s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 281s Selecting previously unselected package fontconfig. 281s Preparing to unpack .../113-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 281s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 281s Selecting previously unselected package libthai-data. 281s Preparing to unpack .../114-libthai-data_0.1.29-2build1_all.deb ... 281s Unpacking libthai-data (0.1.29-2build1) ... 281s Selecting previously unselected package libdatrie1:ppc64el. 281s Preparing to unpack .../115-libdatrie1_0.2.13-3build1_ppc64el.deb ... 281s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 281s Selecting previously unselected package libthai0:ppc64el. 281s Preparing to unpack .../116-libthai0_0.1.29-2build1_ppc64el.deb ... 281s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 281s Selecting previously unselected package libpango-1.0-0:ppc64el. 281s Preparing to unpack .../117-libpango-1.0-0_1.54.0+ds-1_ppc64el.deb ... 281s Unpacking libpango-1.0-0:ppc64el (1.54.0+ds-1) ... 281s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 281s Preparing to unpack .../118-libpangoft2-1.0-0_1.54.0+ds-1_ppc64el.deb ... 281s Unpacking libpangoft2-1.0-0:ppc64el (1.54.0+ds-1) ... 281s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 281s Preparing to unpack .../119-libpangocairo-1.0-0_1.54.0+ds-1_ppc64el.deb ... 281s Unpacking libpangocairo-1.0-0:ppc64el (1.54.0+ds-1) ... 281s Selecting previously unselected package libice6:ppc64el. 281s Preparing to unpack .../120-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 281s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 281s Selecting previously unselected package libsm6:ppc64el. 281s Preparing to unpack .../121-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 281s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 282s Selecting previously unselected package libxt6t64:ppc64el. 282s Preparing to unpack .../122-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 282s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 282s Selecting previously unselected package r-base-core. 282s Preparing to unpack .../123-r-base-core_4.4.1-1_ppc64el.deb ... 282s Unpacking r-base-core (4.4.1-1) ... 282s Selecting previously unselected package r-bioc-biocgenerics. 282s Preparing to unpack .../124-r-bioc-biocgenerics_0.48.1-2_all.deb ... 282s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 282s Selecting previously unselected package r-bioc-dnacopy. 282s Preparing to unpack .../125-r-bioc-dnacopy_1.76.0-1_ppc64el.deb ... 282s Unpacking r-bioc-dnacopy (1.76.0-1) ... 282s Selecting previously unselected package cnvkit. 282s Preparing to unpack .../126-cnvkit_0.9.10-2_all.deb ... 282s Unpacking cnvkit (0.9.10-2) ... 283s Selecting previously unselected package python3-xopen. 283s Preparing to unpack .../127-python3-xopen_1.7.0-2_all.deb ... 283s Unpacking python3-xopen (1.7.0-2) ... 283s Selecting previously unselected package python3-dnaio. 283s Preparing to unpack .../128-python3-dnaio_1.2.0-2build1_ppc64el.deb ... 283s Unpacking python3-dnaio (1.2.0-2build1) ... 283s Selecting previously unselected package python3-cutadapt. 283s Preparing to unpack .../129-python3-cutadapt_4.7-2_ppc64el.deb ... 283s Unpacking python3-cutadapt (4.7-2) ... 283s Selecting previously unselected package cutadapt. 283s Preparing to unpack .../130-cutadapt_4.7-2_all.deb ... 283s Unpacking cutadapt (4.7-2) ... 283s Selecting previously unselected package diamond-aligner. 283s Preparing to unpack .../131-diamond-aligner_2.1.9-1_ppc64el.deb ... 283s Unpacking diamond-aligner (2.1.9-1) ... 283s Selecting previously unselected package emboss-data. 283s Preparing to unpack .../132-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ... 283s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ... 290s Selecting previously unselected package emboss-test. 290s Preparing to unpack .../133-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ... 290s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ... 291s Selecting previously unselected package fonts-font-awesome. 291s Preparing to unpack .../134-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 291s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 291s Selecting previously unselected package fonts-glyphicons-halflings. 291s Preparing to unpack .../135-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 291s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 291s Selecting previously unselected package fonts-mathjax. 291s Preparing to unpack .../136-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 291s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 291s Selecting previously unselected package libgd-perl. 291s Preparing to unpack .../137-libgd-perl_2.78-1build3_ppc64el.deb ... 291s Unpacking libgd-perl (2.78-1build3) ... 291s Selecting previously unselected package libdevel-symdump-perl. 291s Preparing to unpack .../138-libdevel-symdump-perl_2.18-5_all.deb ... 291s Unpacking libdevel-symdump-perl (2.18-5) ... 291s Selecting previously unselected package liburi-perl. 291s Preparing to unpack .../139-liburi-perl_5.28-1_all.deb ... 291s Unpacking liburi-perl (5.28-1) ... 291s Selecting previously unselected package libencode-locale-perl. 291s Preparing to unpack .../140-libencode-locale-perl_1.05-3_all.deb ... 291s Unpacking libencode-locale-perl (1.05-3) ... 291s Selecting previously unselected package libtimedate-perl. 291s Preparing to unpack .../141-libtimedate-perl_2.3300-2_all.deb ... 291s Unpacking libtimedate-perl (2.3300-2) ... 291s Selecting previously unselected package libhttp-date-perl. 291s Preparing to unpack .../142-libhttp-date-perl_6.06-1_all.deb ... 291s Unpacking libhttp-date-perl (6.06-1) ... 291s Selecting previously unselected package libfile-listing-perl. 291s Preparing to unpack .../143-libfile-listing-perl_6.16-1_all.deb ... 291s Unpacking libfile-listing-perl (6.16-1) ... 291s Selecting previously unselected package libhtml-tagset-perl. 291s Preparing to unpack .../144-libhtml-tagset-perl_3.24-1_all.deb ... 291s Unpacking libhtml-tagset-perl (3.24-1) ... 291s Selecting previously unselected package libhtml-parser-perl:ppc64el. 291s Preparing to unpack .../145-libhtml-parser-perl_3.82-1_ppc64el.deb ... 291s Unpacking libhtml-parser-perl:ppc64el (3.82-1) ... 291s Selecting previously unselected package libhtml-tree-perl. 291s Preparing to unpack .../146-libhtml-tree-perl_5.07-3_all.deb ... 291s Unpacking libhtml-tree-perl (5.07-3) ... 291s Selecting previously unselected package libclone-perl:ppc64el. 291s Preparing to unpack .../147-libclone-perl_0.46-1build3_ppc64el.deb ... 291s Unpacking libclone-perl:ppc64el (0.46-1build3) ... 291s Selecting previously unselected package libio-html-perl. 291s Preparing to unpack .../148-libio-html-perl_1.004-3_all.deb ... 291s Unpacking libio-html-perl (1.004-3) ... 291s Selecting previously unselected package liblwp-mediatypes-perl. 291s Preparing to unpack .../149-liblwp-mediatypes-perl_6.04-2_all.deb ... 291s Unpacking liblwp-mediatypes-perl (6.04-2) ... 291s Selecting previously unselected package libhttp-message-perl. 291s Preparing to unpack .../150-libhttp-message-perl_6.45-1ubuntu1_all.deb ... 291s Unpacking libhttp-message-perl (6.45-1ubuntu1) ... 291s Selecting previously unselected package libhttp-cookies-perl. 291s Preparing to unpack .../151-libhttp-cookies-perl_6.11-1_all.deb ... 291s Unpacking libhttp-cookies-perl (6.11-1) ... 291s Selecting previously unselected package libhttp-negotiate-perl. 291s Preparing to unpack .../152-libhttp-negotiate-perl_6.01-2_all.deb ... 291s Unpacking libhttp-negotiate-perl (6.01-2) ... 291s Selecting previously unselected package perl-openssl-defaults:ppc64el. 291s Preparing to unpack .../153-perl-openssl-defaults_7build3_ppc64el.deb ... 291s Unpacking perl-openssl-defaults:ppc64el (7build3) ... 291s Selecting previously unselected package libnet-ssleay-perl:ppc64el. 291s Preparing to unpack .../154-libnet-ssleay-perl_1.94-1build4_ppc64el.deb ... 291s Unpacking libnet-ssleay-perl:ppc64el (1.94-1build4) ... 292s Selecting previously unselected package libio-socket-ssl-perl. 292s Preparing to unpack .../155-libio-socket-ssl-perl_2.085-1_all.deb ... 292s Unpacking libio-socket-ssl-perl (2.085-1) ... 292s Selecting previously unselected package libnet-http-perl. 292s Preparing to unpack .../156-libnet-http-perl_6.23-1_all.deb ... 292s Unpacking libnet-http-perl (6.23-1) ... 292s Selecting previously unselected package liblwp-protocol-https-perl. 292s Preparing to unpack .../157-liblwp-protocol-https-perl_6.14-1_all.deb ... 292s Unpacking liblwp-protocol-https-perl (6.14-1) ... 292s Selecting previously unselected package libtry-tiny-perl. 292s Preparing to unpack .../158-libtry-tiny-perl_0.31-2_all.deb ... 292s Unpacking libtry-tiny-perl (0.31-2) ... 292s Selecting previously unselected package libwww-robotrules-perl. 292s Preparing to unpack .../159-libwww-robotrules-perl_6.02-1_all.deb ... 292s Unpacking libwww-robotrules-perl (6.02-1) ... 292s Selecting previously unselected package libwww-perl. 292s Preparing to unpack .../160-libwww-perl_6.77-1_all.deb ... 292s Unpacking libwww-perl (6.77-1) ... 292s Selecting previously unselected package libapache2-mod-perl2. 292s Preparing to unpack .../161-libapache2-mod-perl2_2.0.13-1build5_ppc64el.deb ... 292s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ... 292s Selecting previously unselected package libdbi-perl:ppc64el. 292s Preparing to unpack .../162-libdbi-perl_1.643-4build3_ppc64el.deb ... 292s Unpacking libdbi-perl:ppc64el (1.643-4build3) ... 292s Selecting previously unselected package libapache-dbi-perl. 292s Preparing to unpack .../163-libapache-dbi-perl_1.12-3_all.deb ... 292s Unpacking libapache-dbi-perl (1.12-3) ... 292s Selecting previously unselected package libbio-db-biofetch-perl. 292s Preparing to unpack .../164-libbio-db-biofetch-perl_1.7.3-4_all.deb ... 292s Unpacking libbio-db-biofetch-perl (1.7.3-4) ... 292s Selecting previously unselected package libcgi-pm-perl. 292s Preparing to unpack .../165-libcgi-pm-perl_4.66-1_all.deb ... 292s Unpacking libcgi-pm-perl (4.66-1) ... 292s Selecting previously unselected package libbio-db-gff-perl. 292s Preparing to unpack .../166-libbio-db-gff-perl_1.7.4-1_all.deb ... 292s Unpacking libbio-db-gff-perl (1.7.4-1) ... 292s Selecting previously unselected package libpq5:ppc64el. 292s Preparing to unpack .../167-libpq5_16.3-1_ppc64el.deb ... 292s Unpacking libpq5:ppc64el (16.3-1) ... 292s Selecting previously unselected package libdbd-pg-perl. 292s Preparing to unpack .../168-libdbd-pg-perl_3.18.0-1build3_ppc64el.deb ... 292s Unpacking libdbd-pg-perl (3.18.0-1build3) ... 292s Selecting previously unselected package libdbd-sqlite3-perl:ppc64el. 292s Preparing to unpack .../169-libdbd-sqlite3-perl_1.74-1build3_ppc64el.deb ... 292s Unpacking libdbd-sqlite3-perl:ppc64el (1.74-1build3) ... 292s Selecting previously unselected package libbio-db-seqfeature-perl. 292s Preparing to unpack .../170-libbio-db-seqfeature-perl_1.7.4-2_all.deb ... 292s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ... 292s Selecting previously unselected package libbio-graphics-perl. 292s Preparing to unpack .../171-libbio-graphics-perl_2.40-6_all.deb ... 292s Unpacking libbio-graphics-perl (2.40-6) ... 292s Selecting previously unselected package libbio-coordinate-perl. 292s Preparing to unpack .../172-libbio-coordinate-perl_1.7.1-4_all.deb ... 292s Unpacking libbio-coordinate-perl (1.7.1-4) ... 292s Selecting previously unselected package libcgi-session-perl. 292s Preparing to unpack .../173-libcgi-session-perl_4.48-4_all.deb ... 292s Unpacking libcgi-session-perl (4.48-4) ... 292s Selecting previously unselected package libjson-perl. 292s Preparing to unpack .../174-libjson-perl_4.10000-1_all.deb ... 292s Unpacking libjson-perl (4.10000-1) ... 292s Selecting previously unselected package libexporter-tiny-perl. 292s Preparing to unpack .../175-libexporter-tiny-perl_1.006002-1_all.deb ... 292s Unpacking libexporter-tiny-perl (1.006002-1) ... 292s Selecting previously unselected package liblist-moreutils-xs-perl. 292s Preparing to unpack .../176-liblist-moreutils-xs-perl_0.430-4_ppc64el.deb ... 292s Unpacking liblist-moreutils-xs-perl (0.430-4) ... 292s Selecting previously unselected package liblist-moreutils-perl. 292s Preparing to unpack .../177-liblist-moreutils-perl_0.430-2_all.deb ... 292s Unpacking liblist-moreutils-perl (0.430-2) ... 292s Selecting previously unselected package libstatistics-descriptive-perl. 292s Preparing to unpack .../178-libstatistics-descriptive-perl_3.0801-1_all.deb ... 292s Unpacking libstatistics-descriptive-perl (3.0801-1) ... 292s Selecting previously unselected package libhttp-daemon-perl. 292s Preparing to unpack .../179-libhttp-daemon-perl_6.16-1_all.deb ... 292s Unpacking libhttp-daemon-perl (6.16-1) ... 292s Selecting previously unselected package libterm-readkey-perl. 292s Preparing to unpack .../180-libterm-readkey-perl_2.38-2build4_ppc64el.deb ... 292s Unpacking libterm-readkey-perl (2.38-2build4) ... 292s Selecting previously unselected package sqlite3. 292s Preparing to unpack .../181-sqlite3_3.46.0-1_ppc64el.deb ... 292s Unpacking sqlite3 (3.46.0-1) ... 292s Selecting previously unselected package libjs-prototype. 292s Preparing to unpack .../182-libjs-prototype_1.7.3-1_all.deb ... 292s Unpacking libjs-prototype (1.7.3-1) ... 292s Selecting previously unselected package libjs-scriptaculous. 292s Preparing to unpack .../183-libjs-scriptaculous_1.9.0-3_all.deb ... 292s Unpacking libjs-scriptaculous (1.9.0-3) ... 292s Selecting previously unselected package libanyevent-perl. 292s Preparing to unpack .../184-libanyevent-perl_7.170-2build6_ppc64el.deb ... 292s Unpacking libanyevent-perl (7.170-2build6) ... 292s Selecting previously unselected package libanyevent-cachedns-perl. 292s Preparing to unpack .../185-libanyevent-cachedns-perl_0.08-3_all.deb ... 292s Unpacking libanyevent-cachedns-perl (0.08-3) ... 292s Selecting previously unselected package libcommon-sense-perl:ppc64el. 292s Preparing to unpack .../186-libcommon-sense-perl_3.75-3build3_ppc64el.deb ... 292s Unpacking libcommon-sense-perl:ppc64el (3.75-3build3) ... 292s Selecting previously unselected package libanyevent-http-perl. 292s Preparing to unpack .../187-libanyevent-http-perl_2.25-2_all.deb ... 292s Unpacking libanyevent-http-perl (2.25-2) ... 292s Selecting previously unselected package libstring-approx-perl. 292s Preparing to unpack .../188-libstring-approx-perl_3.28-2build4_ppc64el.deb ... 292s Unpacking libstring-approx-perl (3.28-2build4) ... 292s Selecting previously unselected package libxml-namespacesupport-perl. 292s Preparing to unpack .../189-libxml-namespacesupport-perl_1.12-2_all.deb ... 292s Unpacking libxml-namespacesupport-perl (1.12-2) ... 292s Selecting previously unselected package libxml-sax-base-perl. 292s Preparing to unpack .../190-libxml-sax-base-perl_1.09-3_all.deb ... 292s Unpacking libxml-sax-base-perl (1.09-3) ... 292s Selecting previously unselected package libxml-sax-perl. 292s Preparing to unpack .../191-libxml-sax-perl_1.02+dfsg-3_all.deb ... 292s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 292s Selecting previously unselected package libxml-libxml-perl. 292s Preparing to unpack .../192-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_ppc64el.deb ... 292s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 293s Selecting previously unselected package libxml-simple-perl. 293s Preparing to unpack .../193-libxml-simple-perl_2.25-2_all.deb ... 293s Unpacking libxml-simple-perl (2.25-2) ... 293s Selecting previously unselected package libvm-ec2-perl. 293s Preparing to unpack .../194-libvm-ec2-perl_1.28-4_all.deb ... 293s Unpacking libvm-ec2-perl (1.28-4) ... 293s Selecting previously unselected package gbrowse. 293s Preparing to unpack .../195-gbrowse_2.56+dfsg-12build3_all.deb ... 293s Unpacking gbrowse (2.56+dfsg-12build3) ... 293s Selecting previously unselected package gcc-13-base:ppc64el. 293s Preparing to unpack .../196-gcc-13-base_13.2.0-23ubuntu4_ppc64el.deb ... 293s Unpacking gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 293s Selecting previously unselected package gff2aplot. 293s Preparing to unpack .../197-gff2aplot_2.0-15_ppc64el.deb ... 293s Unpacking gff2aplot (2.0-15) ... 293s Selecting previously unselected package gff2ps. 293s Preparing to unpack .../198-gff2ps_0.98l-6_all.deb ... 293s Unpacking gff2ps (0.98l-6) ... 293s Selecting previously unselected package libgclib3t64:ppc64el. 293s Preparing to unpack .../199-libgclib3t64_0.12.7+ds-5ubuntu3_ppc64el.deb ... 293s Unpacking libgclib3t64:ppc64el (0.12.7+ds-5ubuntu3) ... 293s Selecting previously unselected package gffread. 293s Preparing to unpack .../200-gffread_0.12.7-6_ppc64el.deb ... 293s Unpacking gffread (0.12.7-6) ... 293s Selecting previously unselected package htslib-test. 293s Preparing to unpack .../201-htslib-test_1.20+ds-1_all.deb ... 293s Unpacking htslib-test (1.20+ds-1) ... 293s Selecting previously unselected package javascript-common. 293s Preparing to unpack .../202-javascript-common_11+nmu1_all.deb ... 293s Unpacking javascript-common (11+nmu1) ... 293s Selecting previously unselected package libasan8:ppc64el. 293s Preparing to unpack .../203-libasan8_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libasan8:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libatomic1:ppc64el. 293s Preparing to unpack .../204-libatomic1_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libatomic1:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libitm1:ppc64el. 293s Preparing to unpack .../205-libitm1_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libitm1:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package liblsan0:ppc64el. 293s Preparing to unpack .../206-liblsan0_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking liblsan0:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libtsan2:ppc64el. 293s Preparing to unpack .../207-libtsan2_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libtsan2:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libubsan1:ppc64el. 293s Preparing to unpack .../208-libubsan1_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libubsan1:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libquadmath0:ppc64el. 293s Preparing to unpack .../209-libquadmath0_14.1.0-1ubuntu1_ppc64el.deb ... 293s Unpacking libquadmath0:ppc64el (14.1.0-1ubuntu1) ... 293s Selecting previously unselected package libgcc-13-dev:ppc64el. 293s Preparing to unpack .../210-libgcc-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 293s Unpacking libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 293s Selecting previously unselected package libstdc++-13-dev:ppc64el. 293s Preparing to unpack .../211-libstdc++-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 293s Unpacking libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 294s Selecting previously unselected package libboost1.83-dev:ppc64el. 294s Preparing to unpack .../212-libboost1.83-dev_1.83.0-3ubuntu1_ppc64el.deb ... 294s Unpacking libboost1.83-dev:ppc64el (1.83.0-3ubuntu1) ... 297s Selecting previously unselected package libboost-dev:ppc64el. 297s Preparing to unpack .../213-libboost-dev_1.83.0.1ubuntu2_ppc64el.deb ... 297s Unpacking libboost-dev:ppc64el (1.83.0.1ubuntu2) ... 297s Selecting previously unselected package libjs-bootstrap. 297s Preparing to unpack .../214-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 297s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 297s Selecting previously unselected package libjs-popper.js. 297s Preparing to unpack .../215-libjs-popper.js_1.16.1+ds-6_all.deb ... 297s Unpacking libjs-popper.js (1.16.1+ds-6) ... 297s Selecting previously unselected package libjs-bootstrap4. 297s Preparing to unpack .../216-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 297s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 297s Selecting previously unselected package libjs-d3. 297s Preparing to unpack .../217-libjs-d3_3.5.17-4_all.deb ... 297s Unpacking libjs-d3 (3.5.17-4) ... 297s Selecting previously unselected package libjs-es5-shim. 297s Preparing to unpack .../218-libjs-es5-shim_4.6.7-2_all.deb ... 297s Unpacking libjs-es5-shim (4.6.7-2) ... 297s Selecting previously unselected package libjs-highlight.js. 297s Preparing to unpack .../219-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 297s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 297s Selecting previously unselected package libjs-jquery-datatables. 297s Preparing to unpack .../220-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 297s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 297s Selecting previously unselected package libjs-sifter.js. 297s Preparing to unpack .../221-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 297s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 297s Selecting previously unselected package libjs-microplugin.js. 297s Preparing to unpack .../222-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 297s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 297s Selecting previously unselected package libjs-jquery-selectize.js. 297s Preparing to unpack .../223-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 297s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 297s Selecting previously unselected package libjs-json. 297s Preparing to unpack .../224-libjs-json_0~20221030+~1.0.8-1_all.deb ... 297s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 297s Selecting previously unselected package libjs-prettify. 297s Preparing to unpack .../225-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 297s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 297s Selecting previously unselected package liblua5.1-0:ppc64el. 297s Preparing to unpack .../226-liblua5.1-0_5.1.5-9build2_ppc64el.deb ... 297s Unpacking liblua5.1-0:ppc64el (5.1.5-9build2) ... 297s Selecting previously unselected package libmbedcrypto7t64:ppc64el. 297s Preparing to unpack .../227-libmbedcrypto7t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedcrypto7t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libmbedx509-1t64:ppc64el. 297s Preparing to unpack .../228-libmbedx509-1t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedx509-1t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libmbedtls14t64:ppc64el. 297s Preparing to unpack .../229-libmbedtls14t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedtls14t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libtre5:ppc64el. 297s Preparing to unpack .../230-libtre5_0.8.0-7_ppc64el.deb ... 297s Unpacking libtre5:ppc64el (0.8.0-7) ... 297s Selecting previously unselected package ncbi-data. 297s Preparing to unpack .../231-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... 297s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... 297s Selecting previously unselected package ncbi-blast+. 297s Preparing to unpack .../232-ncbi-blast+_2.12.0+ds-4build2_ppc64el.deb ... 297s Unpacking ncbi-blast+ (2.12.0+ds-4build2) ... 298s Selecting previously unselected package node-bootstrap-sass. 298s Preparing to unpack .../233-node-bootstrap-sass_3.4.3-2_all.deb ... 298s Unpacking node-bootstrap-sass (3.4.3-2) ... 298s Selecting previously unselected package node-html5shiv. 298s Preparing to unpack .../234-node-html5shiv_3.7.3+dfsg-5_all.deb ... 298s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 298s Selecting previously unselected package node-normalize.css. 298s Preparing to unpack .../235-node-normalize.css_8.0.1-5_all.deb ... 298s Unpacking node-normalize.css (8.0.1-5) ... 298s Selecting previously unselected package bowtie2. 298s Preparing to unpack .../236-bowtie2_2.5.3-1_ppc64el.deb ... 298s Unpacking bowtie2 (2.5.3-1) ... 298s Selecting previously unselected package samtools. 298s Preparing to unpack .../237-samtools_1.20-3_ppc64el.deb ... 298s Unpacking samtools (1.20-3) ... 298s Selecting previously unselected package optimir. 298s Preparing to unpack .../238-optimir_1.2-1_all.deb ... 298s Unpacking optimir (1.2-1) ... 298s Selecting previously unselected package pandoc-data. 298s Preparing to unpack .../239-pandoc-data_3.1.3-2build2_all.deb ... 298s Unpacking pandoc-data (3.1.3-2build2) ... 298s Selecting previously unselected package pandoc. 298s Preparing to unpack .../240-pandoc_3.1.3+ds-3build1_ppc64el.deb ... 298s Unpacking pandoc (3.1.3+ds-3build1) ... 299s Selecting previously unselected package proteinortho. 299s Preparing to unpack .../241-proteinortho_6.3.1+dfsg-1_ppc64el.deb ... 299s Unpacking proteinortho (6.3.1+dfsg-1) ... 299s Selecting previously unselected package python3-argcomplete. 299s Preparing to unpack .../242-python3-argcomplete_3.4.0-1_all.deb ... 299s Unpacking python3-argcomplete (3.4.0-1) ... 299s Selecting previously unselected package python3-argh. 299s Preparing to unpack .../243-python3-argh_0.31.2-1_all.deb ... 299s Unpacking python3-argh (0.31.2-1) ... 299s Selecting previously unselected package python3-simplejson. 299s Preparing to unpack .../244-python3-simplejson_3.19.2-1build2_ppc64el.deb ... 299s Unpacking python3-simplejson (3.19.2-1build2) ... 299s Selecting previously unselected package python3-gffutils. 299s Preparing to unpack .../245-python3-gffutils_0.13-1_all.deb ... 299s Unpacking python3-gffutils (0.13-1) ... 300s Selecting previously unselected package python3-pybedtools. 300s Preparing to unpack .../246-python3-pybedtools_0.10.0-1_ppc64el.deb ... 300s Unpacking python3-pybedtools (0.10.0-1) ... 300s Selecting previously unselected package r-bioc-biobase. 300s Preparing to unpack .../247-r-bioc-biobase_2.62.0-1_ppc64el.deb ... 300s Unpacking r-bioc-biobase (2.62.0-1) ... 300s Selecting previously unselected package r-bioc-s4vectors. 300s Preparing to unpack .../248-r-bioc-s4vectors_0.40.2+dfsg-1_ppc64el.deb ... 300s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 300s Selecting previously unselected package r-bioc-iranges. 300s Preparing to unpack .../249-r-bioc-iranges_2.36.0-1_ppc64el.deb ... 300s Unpacking r-bioc-iranges (2.36.0-1) ... 300s Selecting previously unselected package r-cran-dbi. 300s Preparing to unpack .../250-r-cran-dbi_1.2.3-1_all.deb ... 300s Unpacking r-cran-dbi (1.2.3-1) ... 300s Selecting previously unselected package r-cran-bit. 300s Preparing to unpack .../251-r-cran-bit_4.0.5-1_ppc64el.deb ... 300s Unpacking r-cran-bit (4.0.5-1) ... 300s Selecting previously unselected package r-cran-bit64. 300s Preparing to unpack .../252-r-cran-bit64_4.0.5-1_ppc64el.deb ... 300s Unpacking r-cran-bit64 (4.0.5-1) ... 300s Selecting previously unselected package r-cran-rlang. 300s Preparing to unpack .../253-r-cran-rlang_1.1.4-1_ppc64el.deb ... 300s Unpacking r-cran-rlang (1.1.4-1) ... 300s Selecting previously unselected package r-cran-cli. 300s Preparing to unpack .../254-r-cran-cli_3.6.2-1_ppc64el.deb ... 300s Unpacking r-cran-cli (3.6.2-1) ... 300s Selecting previously unselected package r-cran-glue. 300s Preparing to unpack .../255-r-cran-glue_1.7.0-1_ppc64el.deb ... 300s Unpacking r-cran-glue (1.7.0-1) ... 300s Selecting previously unselected package r-cran-lifecycle. 300s Preparing to unpack .../256-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 300s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 300s Selecting previously unselected package r-cran-vctrs. 300s Preparing to unpack .../257-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 300s Unpacking r-cran-vctrs (0.6.5-1) ... 300s Selecting previously unselected package r-cran-blob. 300s Preparing to unpack .../258-r-cran-blob_1.2.4-1_all.deb ... 300s Unpacking r-cran-blob (1.2.4-1) ... 300s Selecting previously unselected package r-cran-fastmap. 300s Preparing to unpack .../259-r-cran-fastmap_1.1.1-1_ppc64el.deb ... 300s Unpacking r-cran-fastmap (1.1.1-1) ... 300s Selecting previously unselected package r-cran-cachem. 300s Preparing to unpack .../260-r-cran-cachem_1.0.8-1_ppc64el.deb ... 300s Unpacking r-cran-cachem (1.0.8-1) ... 300s Selecting previously unselected package r-cran-memoise. 300s Preparing to unpack .../261-r-cran-memoise_2.0.1-1_all.deb ... 300s Unpacking r-cran-memoise (2.0.1-1) ... 300s Selecting previously unselected package r-cran-pkgconfig. 300s Preparing to unpack .../262-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 300s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 300s Selecting previously unselected package r-cran-plogr. 300s Preparing to unpack .../263-r-cran-plogr_0.2.0-3build1_all.deb ... 300s Unpacking r-cran-plogr (0.2.0-3build1) ... 300s Selecting previously unselected package r-cran-cpp11. 300s Preparing to unpack .../264-r-cran-cpp11_0.4.7-1_all.deb ... 300s Unpacking r-cran-cpp11 (0.4.7-1) ... 300s Selecting previously unselected package r-cran-rsqlite. 300s Preparing to unpack .../265-r-cran-rsqlite_2.3.7-1_ppc64el.deb ... 300s Unpacking r-cran-rsqlite (2.3.7-1) ... 300s Selecting previously unselected package r-cran-curl. 300s Preparing to unpack .../266-r-cran-curl_5.2.1+dfsg-1_ppc64el.deb ... 300s Unpacking r-cran-curl (5.2.1+dfsg-1) ... 300s Selecting previously unselected package r-cran-jsonlite. 300s Preparing to unpack .../267-r-cran-jsonlite_1.8.8+dfsg-1_ppc64el.deb ... 300s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 300s Selecting previously unselected package r-cran-mime. 300s Preparing to unpack .../268-r-cran-mime_0.12-2_ppc64el.deb ... 300s Unpacking r-cran-mime (0.12-2) ... 300s Selecting previously unselected package r-cran-sys. 300s Preparing to unpack .../269-r-cran-sys_3.4.2-1_ppc64el.deb ... 300s Unpacking r-cran-sys (3.4.2-1) ... 300s Selecting previously unselected package r-cran-askpass. 301s Preparing to unpack .../270-r-cran-askpass_1.2.0-1_ppc64el.deb ... 301s Unpacking r-cran-askpass (1.2.0-1) ... 301s Selecting previously unselected package r-cran-openssl. 301s Preparing to unpack .../271-r-cran-openssl_2.1.1+dfsg-2build2_ppc64el.deb ... 301s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 301s Selecting previously unselected package r-cran-r6. 301s Preparing to unpack .../272-r-cran-r6_2.5.1-1_all.deb ... 301s Unpacking r-cran-r6 (2.5.1-1) ... 301s Selecting previously unselected package r-cran-httr. 301s Preparing to unpack .../273-r-cran-httr_1.4.7+dfsg-1_all.deb ... 301s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 301s Selecting previously unselected package r-cran-png. 301s Preparing to unpack .../274-r-cran-png_0.1-8-1build2_ppc64el.deb ... 301s Unpacking r-cran-png (0.1-8-1build2) ... 301s Selecting previously unselected package zlib1g-dev:ppc64el. 301s Preparing to unpack .../275-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ... 301s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 301s Selecting previously unselected package r-bioc-zlibbioc. 301s Preparing to unpack .../276-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 301s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 301s Selecting previously unselected package r-bioc-xvector. 301s Preparing to unpack .../277-r-bioc-xvector_0.42.0-1_ppc64el.deb ... 301s Unpacking r-bioc-xvector (0.42.0-1) ... 301s Selecting previously unselected package r-cran-bitops. 301s Preparing to unpack .../278-r-cran-bitops_1.0-7-1_ppc64el.deb ... 301s Unpacking r-cran-bitops (1.0-7-1) ... 301s Selecting previously unselected package r-cran-rcurl. 301s Preparing to unpack .../279-r-cran-rcurl_1.98-1.14+dfsg-1build2_ppc64el.deb ... 301s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 301s Selecting previously unselected package r-bioc-genomeinfodbdata. 301s Preparing to unpack .../280-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 301s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 301s Selecting previously unselected package r-bioc-genomeinfodb. 301s Preparing to unpack .../281-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 301s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 301s Selecting previously unselected package r-cran-crayon. 301s Preparing to unpack .../282-r-cran-crayon_1.5.2-1_all.deb ... 301s Unpacking r-cran-crayon (1.5.2-1) ... 301s Selecting previously unselected package r-bioc-biostrings. 301s Preparing to unpack .../283-r-bioc-biostrings_2.70.3+dfsg-1_ppc64el.deb ... 301s Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ... 301s Selecting previously unselected package r-bioc-keggrest. 301s Preparing to unpack .../284-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 301s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 301s Selecting previously unselected package r-bioc-annotationdbi. 301s Preparing to unpack .../285-r-bioc-annotationdbi_1.64.1-1_all.deb ... 301s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 301s Selecting previously unselected package r-bioc-genomicranges. 301s Preparing to unpack .../286-r-bioc-genomicranges_1.54.1+dfsg-1_ppc64el.deb ... 301s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 301s Selecting previously unselected package r-cran-lazyeval. 301s Preparing to unpack .../287-r-cran-lazyeval_0.2.2-1build1_ppc64el.deb ... 301s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 301s Selecting previously unselected package r-bioc-annotationfilter. 301s Preparing to unpack .../288-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 301s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 301s Selecting previously unselected package r-cran-generics. 301s Preparing to unpack .../289-r-cran-generics_0.1.3-1_all.deb ... 301s Unpacking r-cran-generics (0.1.3-1) ... 301s Selecting previously unselected package r-cran-magrittr. 301s Preparing to unpack .../290-r-cran-magrittr_2.0.3-1_ppc64el.deb ... 301s Unpacking r-cran-magrittr (2.0.3-1) ... 301s Selecting previously unselected package r-cran-fansi. 301s Preparing to unpack .../291-r-cran-fansi_1.0.5-1_ppc64el.deb ... 301s Unpacking r-cran-fansi (1.0.5-1) ... 301s Selecting previously unselected package r-cran-utf8. 301s Preparing to unpack .../292-r-cran-utf8_1.2.4-1_ppc64el.deb ... 301s Unpacking r-cran-utf8 (1.2.4-1) ... 301s Selecting previously unselected package r-cran-pillar. 301s Preparing to unpack .../293-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 301s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 301s Selecting previously unselected package r-cran-tibble. 301s Preparing to unpack .../294-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ... 301s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 301s Selecting previously unselected package r-cran-withr. 301s Preparing to unpack .../295-r-cran-withr_2.5.0-1_all.deb ... 301s Unpacking r-cran-withr (2.5.0-1) ... 302s Selecting previously unselected package r-cran-tidyselect. 302s Preparing to unpack .../296-r-cran-tidyselect_1.2.1+dfsg-1_ppc64el.deb ... 302s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 302s Selecting previously unselected package r-cran-dplyr. 302s Preparing to unpack .../297-r-cran-dplyr_1.1.4-1_ppc64el.deb ... 302s Unpacking r-cran-dplyr (1.1.4-1) ... 302s Selecting previously unselected package r-cran-purrr. 302s Preparing to unpack .../298-r-cran-purrr_1.0.2-1_ppc64el.deb ... 302s Unpacking r-cran-purrr (1.0.2-1) ... 302s Selecting previously unselected package r-cran-stringi. 302s Preparing to unpack .../299-r-cran-stringi_1.8.3-1_ppc64el.deb ... 302s Unpacking r-cran-stringi (1.8.3-1) ... 302s Selecting previously unselected package r-cran-stringr. 302s Preparing to unpack .../300-r-cran-stringr_1.5.1-1_all.deb ... 302s Unpacking r-cran-stringr (1.5.1-1) ... 302s Selecting previously unselected package r-cran-tidyr. 302s Preparing to unpack .../301-r-cran-tidyr_1.3.1-1_ppc64el.deb ... 302s Unpacking r-cran-tidyr (1.3.1-1) ... 302s Selecting previously unselected package r-cran-dbplyr. 302s Preparing to unpack .../302-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 302s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 302s Selecting previously unselected package r-cran-filelock. 302s Preparing to unpack .../303-r-cran-filelock_1.0.3-1_ppc64el.deb ... 302s Unpacking r-cran-filelock (1.0.3-1) ... 302s Selecting previously unselected package r-bioc-biocfilecache. 302s Preparing to unpack .../304-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 302s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 302s Selecting previously unselected package r-bioc-biocio. 302s Preparing to unpack .../305-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 302s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 302s Selecting previously unselected package r-cran-formatr. 302s Preparing to unpack .../306-r-cran-formatr_1.14-2_all.deb ... 302s Unpacking r-cran-formatr (1.14-2) ... 302s Selecting previously unselected package r-cran-lambda.r. 302s Preparing to unpack .../307-r-cran-lambda.r_1.2.4-2build1_all.deb ... 302s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 302s Selecting previously unselected package r-cran-futile.options. 302s Preparing to unpack .../308-r-cran-futile.options_1.0.1-3build1_all.deb ... 302s Unpacking r-cran-futile.options (1.0.1-3build1) ... 302s Selecting previously unselected package r-cran-futile.logger. 302s Preparing to unpack .../309-r-cran-futile.logger_1.4.3-4build1_all.deb ... 302s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 302s Selecting previously unselected package r-cran-snow. 302s Preparing to unpack .../310-r-cran-snow_1%3a0.4.4-2_all.deb ... 302s Unpacking r-cran-snow (1:0.4.4-2) ... 302s Selecting previously unselected package r-cran-codetools. 302s Preparing to unpack .../311-r-cran-codetools_0.2-20-1_all.deb ... 302s Unpacking r-cran-codetools (0.2-20-1) ... 302s Selecting previously unselected package r-cran-bh. 302s Preparing to unpack .../312-r-cran-bh_1.84.0-1_all.deb ... 302s Unpacking r-cran-bh (1.84.0-1) ... 302s Selecting previously unselected package r-bioc-biocparallel. 302s Preparing to unpack .../313-r-bioc-biocparallel_1.36.0-1_ppc64el.deb ... 302s Unpacking r-bioc-biocparallel (1.36.0-1) ... 302s Selecting previously unselected package r-cran-xml. 302s Preparing to unpack .../314-r-cran-xml_3.99-0.17-1_ppc64el.deb ... 302s Unpacking r-cran-xml (3.99-0.17-1) ... 302s Selecting previously unselected package r-cran-hms. 302s Preparing to unpack .../315-r-cran-hms_1.1.3-1_all.deb ... 302s Unpacking r-cran-hms (1.1.3-1) ... 302s Selecting previously unselected package r-cran-prettyunits. 302s Preparing to unpack .../316-r-cran-prettyunits_1.2.0-1_all.deb ... 302s Unpacking r-cran-prettyunits (1.2.0-1) ... 302s Selecting previously unselected package r-cran-progress. 302s Preparing to unpack .../317-r-cran-progress_1.2.3-1_all.deb ... 302s Unpacking r-cran-progress (1.2.3-1) ... 302s Selecting previously unselected package r-cran-digest. 302s Preparing to unpack .../318-r-cran-digest_0.6.36-1_ppc64el.deb ... 302s Unpacking r-cran-digest (0.6.36-1) ... 302s Selecting previously unselected package r-cran-rappdirs. 302s Preparing to unpack .../319-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 302s Unpacking r-cran-rappdirs (0.3.3-1) ... 302s Selecting previously unselected package r-cran-xml2. 302s Preparing to unpack .../320-r-cran-xml2_1.3.6-1_ppc64el.deb ... 302s Unpacking r-cran-xml2 (1.3.6-1) ... 302s Selecting previously unselected package r-bioc-biomart. 302s Preparing to unpack .../321-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 302s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 302s Selecting previously unselected package r-cran-farver. 302s Preparing to unpack .../322-r-cran-farver_2.1.2-1_ppc64el.deb ... 302s Unpacking r-cran-farver (2.1.2-1) ... 302s Selecting previously unselected package r-cran-labeling. 302s Preparing to unpack .../323-r-cran-labeling_0.4.3-1_all.deb ... 302s Unpacking r-cran-labeling (0.4.3-1) ... 302s Selecting previously unselected package r-cran-colorspace. 302s Preparing to unpack .../324-r-cran-colorspace_2.1-0+dfsg-1_ppc64el.deb ... 302s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 302s Selecting previously unselected package r-cran-munsell. 302s Preparing to unpack .../325-r-cran-munsell_0.5.1-1_all.deb ... 302s Unpacking r-cran-munsell (0.5.1-1) ... 302s Selecting previously unselected package r-cran-rcolorbrewer. 302s Preparing to unpack .../326-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 302s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 302s Selecting previously unselected package r-cran-viridislite. 302s Preparing to unpack .../327-r-cran-viridislite_0.4.2-2_all.deb ... 302s Unpacking r-cran-viridislite (0.4.2-2) ... 302s Selecting previously unselected package r-cran-scales. 302s Preparing to unpack .../328-r-cran-scales_1.3.0-1_all.deb ... 302s Unpacking r-cran-scales (1.3.0-1) ... 303s Selecting previously unselected package r-cran-gtable. 303s Preparing to unpack .../329-r-cran-gtable_0.3.5+dfsg-1_all.deb ... 303s Unpacking r-cran-gtable (0.3.5+dfsg-1) ... 303s Selecting previously unselected package r-cran-isoband. 303s Preparing to unpack .../330-r-cran-isoband_0.2.7-1_ppc64el.deb ... 303s Unpacking r-cran-isoband (0.2.7-1) ... 303s Selecting previously unselected package r-cran-mass. 303s Preparing to unpack .../331-r-cran-mass_7.3-61-1_ppc64el.deb ... 303s Unpacking r-cran-mass (7.3-61-1) ... 303s Selecting previously unselected package r-cran-lattice. 303s Preparing to unpack .../332-r-cran-lattice_0.22-6-1_ppc64el.deb ... 303s Unpacking r-cran-lattice (0.22-6-1) ... 303s Selecting previously unselected package r-cran-nlme. 303s Preparing to unpack .../333-r-cran-nlme_3.1.165-1_ppc64el.deb ... 303s Unpacking r-cran-nlme (3.1.165-1) ... 303s Selecting previously unselected package r-cran-matrix. 303s Preparing to unpack .../334-r-cran-matrix_1.7-0-3_ppc64el.deb ... 303s Unpacking r-cran-matrix (1.7-0-3) ... 303s Selecting previously unselected package r-cran-mgcv. 303s Preparing to unpack .../335-r-cran-mgcv_1.9-1-1_ppc64el.deb ... 303s Unpacking r-cran-mgcv (1.9-1-1) ... 303s Selecting previously unselected package r-cran-ggplot2. 303s Preparing to unpack .../336-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 303s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 303s Selecting previously unselected package r-cran-cluster. 303s Preparing to unpack .../337-r-cran-cluster_2.1.6-1build1_ppc64el.deb ... 303s Unpacking r-cran-cluster (2.1.6-1build1) ... 303s Selecting previously unselected package r-cran-survival. 303s Preparing to unpack .../338-r-cran-survival_3.7-0-1_ppc64el.deb ... 303s Unpacking r-cran-survival (3.7-0-1) ... 303s Selecting previously unselected package r-cran-rpart. 303s Preparing to unpack .../339-r-cran-rpart_4.1.23-1build1_ppc64el.deb ... 303s Unpacking r-cran-rpart (4.1.23-1build1) ... 303s Selecting previously unselected package r-cran-nnet. 303s Preparing to unpack .../340-r-cran-nnet_7.3-19-2build1_ppc64el.deb ... 303s Unpacking r-cran-nnet (7.3-19-2build1) ... 303s Selecting previously unselected package r-cran-foreign. 303s Preparing to unpack .../341-r-cran-foreign_0.8.87-1_ppc64el.deb ... 303s Unpacking r-cran-foreign (0.8.87-1) ... 303s Selecting previously unselected package r-cran-gridextra. 303s Preparing to unpack .../342-r-cran-gridextra_2.3-3build1_all.deb ... 303s Unpacking r-cran-gridextra (2.3-3build1) ... 303s Selecting previously unselected package r-cran-data.table. 303s Preparing to unpack .../343-r-cran-data.table_1.15.4+dfsg-2.2_ppc64el.deb ... 303s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 303s Selecting previously unselected package r-cran-evaluate. 303s Preparing to unpack .../344-r-cran-evaluate_0.24.0-1_all.deb ... 303s Unpacking r-cran-evaluate (0.24.0-1) ... 303s Selecting previously unselected package r-cran-xfun. 303s Preparing to unpack .../345-r-cran-xfun_0.45+dfsg-1_ppc64el.deb ... 303s Unpacking r-cran-xfun (0.45+dfsg-1) ... 303s Selecting previously unselected package r-cran-highr. 303s Preparing to unpack .../346-r-cran-highr_0.11+dfsg-1_all.deb ... 303s Unpacking r-cran-highr (0.11+dfsg-1) ... 303s Selecting previously unselected package r-cran-yaml. 303s Preparing to unpack .../347-r-cran-yaml_2.3.8-2_ppc64el.deb ... 303s Unpacking r-cran-yaml (2.3.8-2) ... 303s Selecting previously unselected package libjs-mathjax. 303s Preparing to unpack .../348-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 303s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 305s Selecting previously unselected package r-cran-knitr. 305s Preparing to unpack .../349-r-cran-knitr_1.47+dfsg-1_all.deb ... 305s Unpacking r-cran-knitr (1.47+dfsg-1) ... 305s Selecting previously unselected package r-cran-backports. 305s Preparing to unpack .../350-r-cran-backports_1.4.1-1_ppc64el.deb ... 305s Unpacking r-cran-backports (1.4.1-1) ... 305s Selecting previously unselected package r-cran-checkmate. 305s Preparing to unpack .../351-r-cran-checkmate_2.3.1-1_ppc64el.deb ... 305s Unpacking r-cran-checkmate (2.3.1-1) ... 305s Selecting previously unselected package r-cran-base64enc. 305s Preparing to unpack .../352-r-cran-base64enc_0.1-3-3_ppc64el.deb ... 305s Unpacking r-cran-base64enc (0.1-3-3) ... 305s Selecting previously unselected package r-cran-htmltools. 305s Preparing to unpack .../353-r-cran-htmltools_0.5.8.1-1_ppc64el.deb ... 305s Unpacking r-cran-htmltools (0.5.8.1-1) ... 305s Selecting previously unselected package r-cran-jquerylib. 305s Preparing to unpack .../354-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 305s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 305s Selecting previously unselected package r-cran-fs. 305s Preparing to unpack .../355-r-cran-fs_1.6.4+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-fs (1.6.4+dfsg-1) ... 305s Selecting previously unselected package r-cran-sass. 305s Preparing to unpack .../356-r-cran-sass_0.4.9+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 305s Selecting previously unselected package r-cran-bslib. 305s Preparing to unpack .../357-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 305s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 305s Selecting previously unselected package r-cran-fontawesome. 305s Preparing to unpack .../358-r-cran-fontawesome_0.5.2-1_all.deb ... 305s Unpacking r-cran-fontawesome (0.5.2-1) ... 305s Selecting previously unselected package r-cran-tinytex. 305s Preparing to unpack .../359-r-cran-tinytex_0.51-1_all.deb ... 305s Unpacking r-cran-tinytex (0.51-1) ... 305s Selecting previously unselected package libjs-modernizr. 305s Preparing to unpack .../360-libjs-modernizr_3.13.0-0.1_all.deb ... 305s Unpacking libjs-modernizr (3.13.0-0.1) ... 305s Selecting previously unselected package r-cran-littler. 305s Preparing to unpack .../361-r-cran-littler_0.3.20-1_ppc64el.deb ... 305s Unpacking r-cran-littler (0.3.20-1) ... 305s Selecting previously unselected package r-cran-pkgkitten. 305s Preparing to unpack .../362-r-cran-pkgkitten_0.2.3-1_all.deb ... 305s Unpacking r-cran-pkgkitten (0.2.3-1) ... 305s Selecting previously unselected package r-cran-rcpp. 305s Preparing to unpack .../363-r-cran-rcpp_1.0.12-1_ppc64el.deb ... 305s Unpacking r-cran-rcpp (1.0.12-1) ... 305s Selecting previously unselected package r-cran-later. 305s Preparing to unpack .../364-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-later (1.3.2+dfsg-1) ... 305s Selecting previously unselected package r-cran-promises. 305s Preparing to unpack .../365-r-cran-promises_1.3.0+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 305s Selecting previously unselected package r-cran-httpuv. 305s Preparing to unpack .../366-r-cran-httpuv_1.6.15+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 305s Selecting previously unselected package r-cran-xtable. 305s Preparing to unpack .../367-r-cran-xtable_1%3a1.8-4-2_all.deb ... 305s Unpacking r-cran-xtable (1:1.8-4-2) ... 305s Selecting previously unselected package r-cran-sourcetools. 305s Preparing to unpack .../368-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ... 305s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 306s Selecting previously unselected package r-cran-commonmark. 306s Preparing to unpack .../369-r-cran-commonmark_1.9.1-1_ppc64el.deb ... 306s Unpacking r-cran-commonmark (1.9.1-1) ... 306s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 306s Preparing to unpack .../370-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 306s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 306s Selecting previously unselected package r-cran-shiny. 306s Preparing to unpack .../371-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 306s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 306s Selecting previously unselected package r-cran-rmarkdown. 306s Preparing to unpack .../372-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 306s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 306s Selecting previously unselected package r-cran-htmlwidgets. 306s Preparing to unpack .../373-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 306s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 306s Selecting previously unselected package r-cran-rstudioapi. 306s Preparing to unpack .../374-r-cran-rstudioapi_0.16.0-1_all.deb ... 306s Unpacking r-cran-rstudioapi (0.16.0-1) ... 306s Selecting previously unselected package r-cran-htmltable. 306s Preparing to unpack .../375-r-cran-htmltable_2.4.2-1_all.deb ... 306s Unpacking r-cran-htmltable (2.4.2-1) ... 306s Selecting previously unselected package r-cran-viridis. 306s Preparing to unpack .../376-r-cran-viridis_0.6.5-1_all.deb ... 306s Unpacking r-cran-viridis (0.6.5-1) ... 306s Selecting previously unselected package r-cran-formula. 306s Preparing to unpack .../377-r-cran-formula_1.2-5-1_all.deb ... 306s Unpacking r-cran-formula (1.2-5-1) ... 306s Selecting previously unselected package r-cran-chron. 306s Preparing to unpack .../378-r-cran-chron_2.3-61-2_ppc64el.deb ... 306s Unpacking r-cran-chron (2.3-61-2) ... 306s Selecting previously unselected package r-cran-jpeg. 306s Preparing to unpack .../379-r-cran-jpeg_0.1-10-1_ppc64el.deb ... 306s Unpacking r-cran-jpeg (0.1-10-1) ... 306s Selecting previously unselected package r-cran-deldir. 306s Preparing to unpack .../380-r-cran-deldir_2.0-4-1build1_ppc64el.deb ... 306s Unpacking r-cran-deldir (2.0-4-1build1) ... 306s Selecting previously unselected package r-cran-rcppeigen. 306s Preparing to unpack .../381-r-cran-rcppeigen_0.3.4.0.0-1build1_ppc64el.deb ... 306s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 306s Selecting previously unselected package r-cran-interp. 306s Preparing to unpack .../382-r-cran-interp_1.1-6-1_ppc64el.deb ... 306s Unpacking r-cran-interp (1.1-6-1) ... 306s Selecting previously unselected package r-cran-latticeextra. 306s Preparing to unpack .../383-r-cran-latticeextra_0.6-30-1_all.deb ... 306s Unpacking r-cran-latticeextra (0.6-30-1) ... 306s Selecting previously unselected package r-cran-acepack. 306s Preparing to unpack .../384-r-cran-acepack_1.4.2-1_ppc64el.deb ... 306s Unpacking r-cran-acepack (1.4.2-1) ... 306s Selecting previously unselected package r-cran-hmisc. 306s Preparing to unpack .../385-r-cran-hmisc_5.1-3-1_ppc64el.deb ... 306s Unpacking r-cran-hmisc (5.1-3-1) ... 306s Selecting previously unselected package r-cran-dichromat. 306s Preparing to unpack .../386-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 306s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 306s Selecting previously unselected package r-cran-matrixstats. 306s Preparing to unpack .../387-r-cran-matrixstats_1.3.0-1_ppc64el.deb ... 306s Unpacking r-cran-matrixstats (1.3.0-1) ... 306s Selecting previously unselected package r-bioc-matrixgenerics. 306s Preparing to unpack .../388-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 306s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 306s Selecting previously unselected package r-cran-abind. 306s Preparing to unpack .../389-r-cran-abind_1.4-5-2_all.deb ... 306s Unpacking r-cran-abind (1.4-5-2) ... 306s Selecting previously unselected package r-bioc-s4arrays. 306s Preparing to unpack .../390-r-bioc-s4arrays_1.2.0+dfsg-1_ppc64el.deb ... 306s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 306s Selecting previously unselected package r-bioc-sparsearray. 306s Preparing to unpack .../391-r-bioc-sparsearray_1.2.4+dfsg-1_ppc64el.deb ... 306s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 307s Selecting previously unselected package r-bioc-delayedarray. 307s Preparing to unpack .../392-r-bioc-delayedarray_0.28.0+dfsg-1_ppc64el.deb ... 307s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 307s Selecting previously unselected package r-bioc-summarizedexperiment. 307s Preparing to unpack .../393-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 307s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 307s Selecting previously unselected package r-bioc-rhtslib. 307s Preparing to unpack .../394-r-bioc-rhtslib_2.4.1+dfsg-3build2_ppc64el.deb ... 307s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 307s Selecting previously unselected package r-bioc-rsamtools. 307s Preparing to unpack .../395-r-bioc-rsamtools_2.18.0+dfsg-1build2_ppc64el.deb ... 307s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 307s Selecting previously unselected package r-bioc-genomicalignments. 307s Preparing to unpack .../396-r-bioc-genomicalignments_1.38.2-1_ppc64el.deb ... 307s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 307s Selecting previously unselected package r-cran-rjson. 307s Preparing to unpack .../397-r-cran-rjson_0.2.21-1_ppc64el.deb ... 307s Unpacking r-cran-rjson (0.2.21-1) ... 307s Selecting previously unselected package r-cran-restfulr. 307s Preparing to unpack .../398-r-cran-restfulr_0.0.15-1_ppc64el.deb ... 307s Unpacking r-cran-restfulr (0.0.15-1) ... 307s Selecting previously unselected package r-bioc-rtracklayer. 307s Preparing to unpack .../399-r-bioc-rtracklayer_1.62.0-1_ppc64el.deb ... 307s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 307s Selecting previously unselected package r-bioc-genomicfeatures. 307s Preparing to unpack .../400-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 307s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 307s Selecting previously unselected package r-bioc-bsgenome. 307s Preparing to unpack .../401-r-bioc-bsgenome_1.70.2-1_all.deb ... 307s Unpacking r-bioc-bsgenome (1.70.2-1) ... 307s Selecting previously unselected package r-bioc-variantannotation. 307s Preparing to unpack .../402-r-bioc-variantannotation_1.48.1-1build2_ppc64el.deb ... 307s Unpacking r-bioc-variantannotation (1.48.1-1build2) ... 307s Selecting previously unselected package r-bioc-protgenerics. 307s Preparing to unpack .../403-r-bioc-protgenerics_1.34.0-1_all.deb ... 307s Unpacking r-bioc-protgenerics (1.34.0-1) ... 307s Selecting previously unselected package r-bioc-ensembldb. 307s Preparing to unpack .../404-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 307s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 307s Selecting previously unselected package r-bioc-biovizbase. 307s Preparing to unpack .../405-r-bioc-biovizbase_1.50.0-1_ppc64el.deb ... 307s Unpacking r-bioc-biovizbase (1.50.0-1) ... 307s Selecting previously unselected package r-bioc-gviz. 307s Preparing to unpack .../406-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 307s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 307s Selecting previously unselected package trinityrnaseq-examples. 307s Preparing to unpack .../407-trinityrnaseq-examples_2.15.1+dfsg-5build1_ppc64el.deb ... 307s Unpacking trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 310s Selecting previously unselected package genometools-common. 310s Preparing to unpack .../408-genometools-common_1.6.5+ds-2.2_all.deb ... 310s Unpacking genometools-common (1.6.5+ds-2.2) ... 310s Selecting previously unselected package seqan-apps. 310s Preparing to unpack .../409-seqan-apps_2.4.0+dfsg-16_ppc64el.deb ... 310s Unpacking seqan-apps (2.4.0+dfsg-16) ... 311s Selecting previously unselected package autopkgtest-satdep. 311s Preparing to unpack .../410-1-autopkgtest-satdep.deb ... 311s Unpacking autopkgtest-satdep (0) ... 311s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 311s Setting up libgclib3t64:ppc64el (0.12.7+ds-5ubuntu3) ... 311s Setting up libanyevent-perl (7.170-2build6) ... 311s Setting up libjs-json (0~20221030+~1.0.8-1) ... 311s Setting up javascript-common (11+nmu1) ... 311s Package apache2 is not configured yet. Will defer actions by package javascript-common. 311s Setting up libgraphite2-3:ppc64el (1.3.14-2ubuntu1) ... 311s Setting up liblcms2-2:ppc64el (2.14-2build1) ... 311s Setting up ncbi-data (6.1.20170106+dfsg2-2) ... 311s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ... 311s Setting up libstring-approx-perl (3.28-2build4) ... 311s Setting up python3-argh (0.31.2-1) ... 311s Setting up libpaper1:ppc64el (1.1.29build1) ... 311s 311s Creating config file /etc/papersize with new version 311s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 314s Regenerating fonts cache... done. 314s Setting up gff2ps (0.98l-6) ... 314s Setting up gffread (0.12.7-6) ... 314s Setting up libtre5:ppc64el (0.8.0-7) ... 314s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 314s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 314s Setting up libmbedcrypto7t64:ppc64el (2.28.8-1) ... 314s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 314s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 314s Setting up libtest-deep-perl (1.204-1) ... 314s Setting up python3-joblib (1.3.2-2) ... 314s Setting up libjs-popper.js (1.16.1+ds-6) ... 314s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 314s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 314s Setting up libclone-perl:ppc64el (0.46-1build3) ... 314s Setting up libalgorithm-diff-perl (1.201-1) ... 314s Setting up htslib-test (1.20+ds-1) ... 314s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 314s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 314s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 314s Setting up fonts-lyx (2.4.1-1) ... 314s Setting up libhtml-tagset-perl (3.24-1) ... 314s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 314s Setting up unzip (6.0-28ubuntu5) ... 314s Setting up liblwp-mediatypes-perl (6.04-2) ... 314s Setting up python3-threadpoolctl (3.1.0-1) ... 314s Setting up x11-common (1:7.7+23ubuntu3) ... 315s Setting up libtry-tiny-perl (0.31-2) ... 315s Setting up node-html5shiv (3.7.3+dfsg-5) ... 315s Setting up libpq5:ppc64el (16.3-1) ... 315s Setting up perl-openssl-defaults:ppc64el (7build3) ... 315s Setting up libcommon-sense-perl:ppc64el (3.75-3build3) ... 315s Setting up libxml-namespacesupport-perl (1.12-2) ... 315s Setting up libanyevent-http-perl (2.25-2) ... 315s Setting up libqhull-r8.0:ppc64el (2020.2-6build1) ... 315s Setting up libencode-locale-perl (1.05-3) ... 315s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 315s Setting up libxcb-shm0:ppc64el (1.17.0-2) ... 315s Setting up libpaper-utils (1.1.29build1) ... 315s Setting up python3-zipp (3.19.2-2) ... 315s Setting up libgomp1:ppc64el (14.1.0-1ubuntu1) ... 315s Setting up python3-freetype (2.4.0-2) ... 315s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ... 315s Setting up python3-networkx (3.2.1-4ubuntu1) ... 317s Setting up libjs-modernizr (3.13.0-0.1) ... 317s Setting up diamond-aligner (2.1.9-1) ... 317s Setting up libcairo2:ppc64el (1.18.0-3build1) ... 317s Setting up bowtie2 (2.5.3-1) ... 317s Setting up augustus-doc (3.5.0+dfsg-4build5) ... 317s Setting up libjs-es5-shim (4.6.7-2) ... 317s Setting up unicode-data (15.1.0-1) ... 317s Setting up python3-simplejson (3.19.2-1build2) ... 317s Setting up libgd-perl (2.78-1build3) ... 317s Setting up libxml-sax-base-perl (1.09-3) ... 317s Setting up libio-string-perl (1.08-4) ... 317s Setting up python3-decorator (5.1.1-5) ... 317s Setting up zip (3.0-13build1) ... 317s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 317s Setting up libblas3:ppc64el (3.12.0-3build1) ... 317s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 317s Setting up libclass-data-inheritable-perl (0.08-3) ... 317s Setting up python3-packaging (24.0-1) ... 317s Setting up gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 317s Setting up libtext-diff-perl (1.45-2) ... 317s Setting up python3-brotli (1.1.0-2build2) ... 317s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 317s Setting up libquadmath0:ppc64el (14.1.0-1ubuntu1) ... 317s Setting up python3-cycler (0.12.1-1) ... 318s Setting up libanyevent-cachedns-perl (0.08-3) ... 318s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 318s Setting up seqan-apps (2.4.0+dfsg-16) ... 318s Setting up libjs-d3 (3.5.17-4) ... 318s Setting up python3-kiwisolver (1.4.5-1) ... 318s Setting up libatomic1:ppc64el (14.1.0-1ubuntu1) ... 318s Setting up libio-html-perl (1.004-3) ... 318s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 318s Setting up liblist-moreutils-xs-perl (0.430-4) ... 318s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ... 318s Setting up libjs-prototype (1.7.3-1) ... 318s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 318s Setting up libcapture-tiny-perl (0.48-2) ... 318s Setting up libtimedate-perl (2.3300-2) ... 318s Setting up libubsan1:ppc64el (14.1.0-1ubuntu1) ... 318s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 318s Setting up libdata-stag-perl (0.14-3) ... 318s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 318s Setting up pigz (2.8-1) ... 318s Setting up libasan8:ppc64el (14.1.0-1ubuntu1) ... 318s Setting up libapr1t64:ppc64el (1.7.2-3.2) ... 318s Setting up libjson-perl (4.10000-1) ... 318s Setting up liblua5.1-0:ppc64el (5.1.5-9build2) ... 318s Setting up libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 318s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 318s Setting up libsub-uplevel-perl (0.2800-3) ... 318s Setting up liblua5.4-0:ppc64el (5.4.6-3build2) ... 318s Setting up libopenjp2-7:ppc64el (2.5.0-2build3) ... 318s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ... 318s Setting up libthai-data (0.1.29-2build1) ... 318s Setting up python3-dateutil (2.9.0-2) ... 318s Setting up node-bootstrap-sass (3.4.3-2) ... 318s Setting up sgml-base (1.31) ... 318s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 318s Setting up libdevel-stacktrace-perl (2.0500-1) ... 318s Setting up apache2-data (2.4.59-2ubuntu2) ... 318s Setting up libdevel-symdump-perl (2.18-5) ... 318s Setting up libbio-perl-perl (1.7.8-1) ... 318s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 318s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 318s Setting up pandoc-data (3.1.3-2build2) ... 318s Setting up libtsan2:ppc64el (14.1.0-1ubuntu1) ... 318s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 318s Setting up bedtools-test (2.31.1+dfsg-2) ... 318s Setting up libexporter-tiny-perl (1.006002-1) ... 318s Setting up libterm-readkey-perl (2.38-2build4) ... 318s Setting up python3-mpmath (1.3.0-1) ... 319s Setting up python3-argcomplete (3.4.0-1) ... 319s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 319s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 319s Setting up gff2aplot (2.0-15) ... 319s Setting up node-normalize.css (8.0.1-5) ... 319s Setting up python3-appdirs (1.4.4-4) ... 319s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 319s Setting up xdg-utils (1.2.1-0ubuntu1) ... 319s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 319s Setting up liburi-perl (5.28-1) ... 319s Setting up sqlite3 (3.46.0-1) ... 319s Setting up libdbi-perl:ppc64el (1.643-4build3) ... 319s Setting up liblsan0:ppc64el (14.1.0-1ubuntu1) ... 319s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 319s Setting up libitm1:ppc64el (14.1.0-1ubuntu1) ... 319s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 319s Setting up libnet-ssleay-perl:ppc64el (1.94-1build4) ... 319s Setting up python3-sympy (1.12-8) ... 326s Setting up libaprutil1t64:ppc64el (1.6.3-2ubuntu1) ... 326s Setting up libice6:ppc64el (2:1.0.10-1build3) ... 326s Setting up libhttp-date-perl (6.06-1) ... 326s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 326s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 326s Setting up libxft2:ppc64el (2.3.6-1build1) ... 326s Setting up libmbedx509-1t64:ppc64el (2.28.8-1) ... 326s Setting up python3-pysam (0.22.1+ds-2) ... 326s Setting up python3-cairo (1.26.1-1) ... 326s Setting up libfile-listing-perl (6.16-1) ... 326s Setting up python3-importlib-metadata (8.0.0-2) ... 327s Setting up libjs-scriptaculous (1.9.0-3) ... 327s Setting up liblist-moreutils-perl (0.430-2) ... 327s Setting up libtest-warn-perl (0.37-2) ... 327s Setting up libtk8.6:ppc64el (8.6.14-1build1) ... 327s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 327s Setting up libtest-differences-perl (0.71-1) ... 327s Setting up libnet-http-perl (6.23-1) ... 327s Setting up libdbd-pg-perl (3.18.0-1build3) ... 327s Setting up libexception-class-perl (1.45-1) ... 327s Setting up libaprutil1-ldap:ppc64el (1.6.3-2ubuntu1) ... 327s Setting up xfonts-utils (1:7.7+6build3) ... 327s Setting up libaprutil1-dbd-sqlite3:ppc64el (1.6.3-2ubuntu1) ... 327s Setting up libxml-sax-perl (1.02+dfsg-3) ... 327s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 327s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 327s 327s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 327s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 327s Setting up samtools (1.20-3) ... 327s Setting up python3-fs (2.4.16-4) ... 327s Setting up libthai0:ppc64el (0.1.29-2build1) ... 327s Setting up python3-xopen (1.7.0-2) ... 327s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 327s Setting up pandoc (3.1.3+ds-3build1) ... 327s Setting up libtest-exception-perl (0.43-3) ... 327s Setting up python3-rlpycairo (0.3.0-3) ... 327s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 327s Setting up python3-numpy (1:1.26.4+ds-10) ... 330s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 330s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 330s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 330s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 330s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 330s Setting up libwww-robotrules-perl (6.02-1) ... 330s Setting up libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 330s Setting up libmbedtls14t64:ppc64el (2.28.8-1) ... 330s Setting up python3-lxml:ppc64el (5.2.1-1) ... 330s Setting up xml-core (0.19) ... 331s Setting up libhtml-parser-perl:ppc64el (3.82-1) ... 331s Setting up python3-contourpy (1.0.7-3) ... 331s Setting up libdbd-sqlite3-perl:ppc64el (1.74-1build3) ... 331s Setting up libsm6:ppc64el (2:1.2.3-1build3) ... 331s Setting up libio-socket-ssl-perl (2.085-1) ... 331s Setting up libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 331s Setting up python3-dnaio (1.2.0-2build1) ... 331s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 331s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 331s Setting up apache2-utils (2.4.59-2ubuntu2) ... 331s Setting up python3-pyfaidx (0.8.1.1-2) ... 331s Setting up libhttp-negotiate-perl (6.01-2) ... 331s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 331s Setting up python3-pybedtools (0.10.0-1) ... 331s Setting up libboost1.83-dev:ppc64el (1.83.0-3ubuntu1) ... 331s Setting up libstatistics-descriptive-perl (3.0801-1) ... 331s Setting up python3-scipy (1.12.0-2) ... 335s Setting up libhttp-cookies-perl (6.11-1) ... 335s Setting up libtest-most-perl (0.38-1) ... 335s Setting up libhtml-tree-perl (5.07-3) ... 335s Setting up blt (2.5.3+dfsg-7build1) ... 335s Setting up python3-pomegranate (0.14.8-6) ... 336s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 336s Setting up libpango-1.0-0:ppc64el (1.54.0+ds-1) ... 336s Setting up libcgi-pm-perl (4.66-1) ... 336s Setting up python3-sklearn-lib:ppc64el (1.4.2+dfsg-3) ... 336s Setting up python3-tk:ppc64el (3.12.3-0ubuntu1) ... 336s Setting up fonts-urw-base35 (20200910-8) ... 336s Setting up apache2-bin (2.4.59-2ubuntu2) ... 336s Setting up ncbi-blast+ (2.12.0+ds-4build2) ... 336s Setting up python3-pil:ppc64el (10.3.0-2) ... 336s Setting up python3-pandas (2.1.4+dfsg-8) ... 342s Setting up python3-cutadapt (4.7-2) ... 342s Setting up python3-pil.imagetk:ppc64el (10.3.0-2) ... 342s Setting up libcgi-session-perl (4.48-4) ... 342s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 342s Setting up python3-sklearn (1.4.2+dfsg-3) ... 345s Setting up libxml-simple-perl (2.25-2) ... 345s Setting up python3-reportlab (4.2.2-1) ... 346s Setting up libhttp-daemon-perl (6.16-1) ... 346s Setting up libboost-dev:ppc64el (1.83.0.1ubuntu2) ... 346s Setting up libpangoft2-1.0-0:ppc64el (1.54.0+ds-1) ... 346s Setting up proteinortho (6.3.1+dfsg-1) ... 346s Setting up libpangocairo-1.0-0:ppc64el (1.54.0+ds-1) ... 346s Setting up bioperl (1.7.8-1) ... 346s Setting up cutadapt (4.7-2) ... 346s Setting up apache2 (2.4.59-2ubuntu2) ... 346s Enabling module mpm_event. 346s Enabling module authz_core. 346s Enabling module authz_host. 346s Enabling module authn_core. 346s Enabling module auth_basic. 346s Enabling module access_compat. 346s Enabling module authn_file. 346s Enabling module authz_user. 346s Enabling module alias. 346s Enabling module dir. 346s Enabling module autoindex. 346s Enabling module env. 346s Enabling module mime. 346s Enabling module negotiation. 346s Enabling module setenvif. 346s Enabling module filter. 346s Enabling module deflate. 346s Enabling module status. 346s Enabling module reqtimeout. 346s Enabling conf charset. 346s Enabling conf localized-error-pages. 346s Enabling conf other-vhosts-access-log. 346s Enabling conf security. 346s Enabling conf serve-cgi-bin. 346s Enabling site 000-default. 346s info: Executing deferred 'a2enconf javascript-common' for package javascript-common 347s Enabling conf javascript-common. 347s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service. 348s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service. 349s Setting up libbio-coordinate-perl (1.7.1-4) ... 349s Setting up r-base-core (4.4.1-1) ... 349s 349s Creating config file /etc/R/Renviron with new version 349s Setting up r-cran-crayon (1.5.2-1) ... 349s Setting up r-cran-labeling (0.4.3-1) ... 349s Setting up r-cran-sourcetools (0.1.7-1-1) ... 349s Setting up r-cran-futile.options (1.0.1-3build1) ... 349s Setting up r-cran-lattice (0.22-6-1) ... 349s Setting up r-cran-nlme (3.1.165-1) ... 349s Setting up r-cran-farver (2.1.2-1) ... 349s Setting up r-cran-formatr (1.14-2) ... 349s Setting up r-cran-formula (1.2-5-1) ... 349s Setting up r-cran-xml (3.99-0.17-1) ... 349s Setting up trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 349s Setting up r-cran-viridislite (0.4.2-2) ... 349s Setting up r-cran-cluster (2.1.6-1build1) ... 349s Setting up genometools-common (1.6.5+ds-2.2) ... 349s Setting up r-cran-nnet (7.3-19-2build1) ... 349s Setting up r-cran-lazyeval (0.2.2-1build1) ... 349s Setting up r-cran-commonmark (1.9.1-1) ... 349s Setting up r-cran-r6 (2.5.1-1) ... 349s Setting up r-cran-pkgkitten (0.2.3-1) ... 349s Setting up r-cran-jpeg (0.1-10-1) ... 349s Setting up r-cran-chron (2.3-61-2) ... 349s Setting up r-cran-magrittr (2.0.3-1) ... 349s Setting up r-cran-rappdirs (0.3.3-1) ... 349s Setting up r-cran-filelock (1.0.3-1) ... 349s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 349s Setting up r-cran-littler (0.3.20-1) ... 349s Setting up r-cran-bh (1.84.0-1) ... 349s Setting up r-cran-fs (1.6.4+dfsg-1) ... 349s Setting up r-cran-rcpp (1.0.12-1) ... 349s Setting up r-cran-curl (5.2.1+dfsg-1) ... 349s Setting up r-cran-codetools (0.2-20-1) ... 349s Setting up r-bioc-biocgenerics (0.48.1-2) ... 349s Setting up r-cran-rlang (1.1.4-1) ... 349s Setting up r-cran-matrixstats (1.3.0-1) ... 349s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 349s Setting up r-cran-xfun (0.45+dfsg-1) ... 349s Setting up r-cran-sys (3.4.2-1) ... 349s Setting up r-cran-plogr (0.2.0-3build1) ... 349s Setting up r-cran-withr (2.5.0-1) ... 349s Setting up r-cran-backports (1.4.1-1) ... 349s Setting up r-cran-mime (0.12-2) ... 349s Setting up r-cran-generics (0.1.3-1) ... 349s Setting up r-cran-base64enc (0.1-3-3) ... 349s Setting up r-cran-abind (1.4-5-2) ... 349s Setting up r-cran-digest (0.6.36-1) ... 349s Setting up r-cran-yaml (2.3.8-2) ... 349s Setting up r-cran-lambda.r (1.2.4-2build1) ... 349s Setting up r-bioc-protgenerics (1.34.0-1) ... 349s Setting up r-cran-evaluate (0.24.0-1) ... 349s Setting up r-cran-dbi (1.2.3-1) ... 349s Setting up r-cran-highr (0.11+dfsg-1) ... 349s Setting up r-cran-prettyunits (1.2.0-1) ... 349s Setting up r-cran-fansi (1.0.5-1) ... 349s Setting up r-cran-mass (7.3-61-1) ... 349s Setting up r-cran-checkmate (2.3.1-1) ... 349s Setting up r-cran-acepack (1.4.2-1) ... 349s Setting up r-cran-snow (1:0.4.4-2) ... 349s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 349s Setting up r-cran-glue (1.7.0-1) ... 349s Setting up r-cran-foreign (0.8.87-1) ... 349s Setting up r-cran-bit (4.0.5-1) ... 349s Setting up r-cran-xtable (1:1.8-4-2) ... 349s Setting up r-cran-cli (3.6.2-1) ... 349s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 349s Setting up r-cran-bitops (1.0-7-1) ... 349s Setting up r-cran-bit64 (4.0.5-1) ... 349s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 349s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 349s Setting up r-cran-deldir (2.0-4-1build1) ... 349s Setting up r-cran-askpass (1.2.0-1) ... 349s Setting up r-cran-fastmap (1.1.1-1) ... 349s Setting up r-cran-png (0.1-8-1build2) ... 349s Setting up r-bioc-biobase (2.62.0-1) ... 349s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 349s Setting up r-cran-rstudioapi (0.16.0-1) ... 349s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 349s Setting up r-cran-utf8 (1.2.4-1) ... 349s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 349s Setting up r-cran-stringi (1.8.3-1) ... 349s Setting up r-cran-cpp11 (0.4.7-1) ... 349s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 349s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 349s Setting up r-cran-isoband (0.2.7-1) ... 349s Setting up r-cran-futile.logger (1.4.3-4build1) ... 349s Setting up r-cran-gtable (0.3.5+dfsg-1) ... 349s Setting up r-cran-later (1.3.2+dfsg-1) ... 349s Setting up r-cran-matrix (1.7-0-3) ... 349s Setting up r-cran-htmltools (0.5.8.1-1) ... 349s Setting up r-cran-tinytex (0.51-1) ... 349s Setting up r-cran-knitr (1.47+dfsg-1) ... 349s Setting up r-cran-mgcv (1.9-1-1) ... 349s Setting up r-bioc-dnacopy (1.76.0-1) ... 349s Setting up r-cran-cachem (1.0.8-1) ... 349s Setting up r-cran-sass (0.4.9+dfsg-1) ... 349s Setting up r-bioc-iranges (2.36.0-1) ... 349s Setting up r-cran-rjson (0.2.21-1) ... 349s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 349s Setting up r-cran-restfulr (0.0.15-1) ... 349s Setting up r-cran-vctrs (0.6.5-1) ... 349s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 349s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 349s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 349s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 349s Setting up r-cran-stringr (1.5.1-1) ... 349s Setting up r-bioc-biocparallel (1.36.0-1) ... 349s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 349s Setting up r-cran-xml2 (1.3.6-1) ... 349s Setting up r-cran-munsell (0.5.1-1) ... 349s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 349s Setting up r-cran-fontawesome (0.5.2-1) ... 349s Setting up r-cran-survival (3.7-0-1) ... 349s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 349s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 349s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 349s Setting up r-cran-interp (1.1-6-1) ... 349s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 349s Setting up r-cran-httr (1.4.7+dfsg-1) ... 349s Setting up r-cran-gridextra (2.3-3build1) ... 349s Setting up r-cran-hms (1.1.3-1) ... 349s Setting up r-cran-scales (1.3.0-1) ... 349s Setting up r-cran-memoise (2.0.1-1) ... 349s Setting up r-cran-promises (1.3.0+dfsg-1) ... 349s Setting up r-cran-purrr (1.0.2-1) ... 349s Setting up r-cran-blob (1.2.4-1) ... 349s Setting up r-bioc-xvector (0.42.0-1) ... 349s Setting up r-cran-dplyr (1.1.4-1) ... 349s Setting up r-cran-rsqlite (2.3.7-1) ... 349s Setting up r-cran-progress (1.2.3-1) ... 349s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 349s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 349s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 349s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 349s Setting up r-cran-rpart (4.1.23-1build1) ... 349s Setting up r-bioc-biostrings (2.70.3+dfsg-1) ... 349s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 349s Setting up r-cran-latticeextra (0.6-30-1) ... 349s Setting up r-cran-viridis (0.6.5-1) ... 349s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 349s Setting up r-cran-tidyr (1.3.1-1) ... 349s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 349s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 349s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 349s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 349s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 349s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 349s Setting up r-bioc-annotationdbi (1.64.1-1) ... 349s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 349s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 349s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 349s Setting up r-bioc-genomicalignments (1.38.2-1) ... 349s Setting up r-bioc-rtracklayer (1.62.0-1) ... 349s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 349s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 349s Setting up r-bioc-bsgenome (1.70.2-1) ... 349s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 349s Setting up r-bioc-variantannotation (1.48.1-1build2) ... 349s Setting up r-cran-htmltable (2.4.2-1) ... 349s Setting up r-cran-hmisc (5.1-3-1) ... 349s Setting up r-bioc-biovizbase (1.50.0-1) ... 349s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 349s Setting up liblwp-protocol-https-perl (6.14-1) ... 349s Setting up libwww-perl (6.77-1) ... 349s Setting up python3-fonttools (4.46.0-1build2) ... 351s Setting up libapache2-mod-perl2 (2.0.13-1build5) ... 351s apache2_invoke: Enable module perl 351s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 351s Setting up libbio-db-biofetch-perl (1.7.3-4) ... 351s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 353s Setting up libvm-ec2-perl (1.28-4) ... 353s Setting up libapache-dbi-perl (1.12-3) ... 353s Setting up libbio-db-gff-perl (1.7.4-1) ... 353s Setting up libbio-db-seqfeature-perl (1.7.4-2) ... 353s Setting up libbio-graphics-perl (2.40-6) ... 353s Setting up gbrowse (2.56+dfsg-12build3) ... 353s apache2_invoke: Enable configuration gbrowse 354s Processing triggers for man-db (2.12.1-2) ... 355s Processing triggers for install-info (7.1-3build2) ... 355s Processing triggers for libc-bin (2.39-0ubuntu9) ... 355s Processing triggers for ufw (0.36.2-6) ... 356s Processing triggers for sgml-base (1.31) ... 356s Setting up w3c-sgml-lib (1.3-3) ... 383s Setting up python3-biopython (1.83+dfsg1-3) ... 385s Setting up python3-gffutils (0.13-1) ... 385s Setting up cnvkit (0.9.10-2) ... 385s Setting up optimir (1.2-1) ... 385s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 385s if prefix is '': 385s Setting up autopkgtest-satdep (0) ... 395s (Reading database ... 138287 files and directories currently installed.) 395s Removing autopkgtest-satdep (0) ... 396s autopkgtest [21:41:50]: test run-tests: [----------------------- 396s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/output.gff: is okay. 396s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay. 396s /usr/share/bedtools/test/fisher/tumor.gff: is okay. 396s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay. 396s /usr/share/bedtools/test/intersect/gdc.gff: is okay. 396s /usr/share/bedtools/test/map/test.gff: is okay. 396s /usr/share/bedtools/test/merge/a.gff: is okay. 396s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay. 396s /usr/share/EMBOSS/data/Efeatures.gff2: is okay. 396s /usr/share/EMBOSS/data/Efeatures.gff3: is okay. 396s /usr/share/EMBOSS/data/Etags.gff2: is okay. 396s /usr/share/EMBOSS/data/Etags.gff3: is okay. 396s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay. 396s /usr/share/EMBOSS/test/data/eden1.gff3: is okay. 396s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay. 396s /usr/share/EMBOSS/test/data/gmod-align.gff3: is okay. 396s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 1050 1500 . + . ID=Match1;Name=agt830.5;Target=agt830.5 1 451 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 3000 3202 . + . ID=Match1;Name=agt830.5;Target=agt830.5 452 654 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 5410 5500 . - . ID=Match2;Name=agt830.3;Target=agt830.3 505 595 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 7000 7503 . - . ID=Match2;Name=agt830.3;Target=agt830.3 1 504 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 1050 1500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 1 451 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 5000 5500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 452 952 396s Warning: unexpected tab character in last column, line truncated: 396s ctg123 est EST_match 7000 7300 . + . ID=Match3;Name=agt221.5;Target=agt221.5 953 1253 396s is okay. 396s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: is okay. 396s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay. 396s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay. 396s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: Warning: unexpected tab character in last column, line truncated: 396s ctg123 example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase 396s is okay. 396s /usr/share/EMBOSS/test/data/hba.gff: is okay. 396s /usr/share/EMBOSS/test/data/noid.gff: is okay. 396s /usr/share/EMBOSS/test/data/paamir.gff: is okay. 396s /usr/share/EMBOSS/test/data/paamir.gff3: is okay. 396s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: Warning: unexpected tab character in last column, line truncated: 396s ctgA est HSP 7000 7300 . + . EST agt221.5 396s Warning: unexpected tab character in last column, line truncated: 396s ctgA est HSP 7000 7200 . + . EST agt767.5 396s is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: is okay. 396s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay. 396s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay. 396s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay. 396s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; 396s is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 7067 7448 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; 396s is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; 396s is okay. 396s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 5572; End 5877; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; 396s Warning: unexpected tab character in last column, line truncated: 396s NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; 396s is okay. 396s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: is okay. 396s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA 212:231 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168 396s is okay. 396s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: is okay. 396s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100 396s is okay. 396s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9 396s Warning: unexpected tab character in last column, line truncated: 396s Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24 396s is okay. 397s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay. 397s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay. 397s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay. 397s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay. 397s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay. 397s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay. 397s /usr/share/doc/proteinortho/examples/C.gff: is okay. 397s /usr/share/doc/proteinortho/examples/C2.gff: is okay. 397s /usr/share/doc/proteinortho/examples/E.gff: is okay. 397s /usr/share/doc/proteinortho/examples/L.gff: is okay. 397s /usr/share/doc/proteinortho/examples/M.gff: is okay. 397s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay. 397s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay. 397s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay. 397s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay. 397s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ITAG4.1_gene_models.subset.gff: is okay. 397s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff: is okay. 397s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3: is okay. 397s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3: is okay. 397s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff: is okay. 397s /usr/lib/R/site-library/Gviz/extdata/test.gff: is okay. 397s /usr/lib/R/site-library/Gviz/extdata/test.gff1: is okay. 397s /usr/lib/R/site-library/Gviz/extdata/test.gff3: is okay. 397s /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff: is okay. 397s /usr/lib/R/site-library/rtracklayer/tests/gtf.gff: is okay. 397s /usr/lib/R/site-library/rtracklayer/tests/v1.gff: is okay. 397s /usr/lib/R/site-library/rtracklayer/tests/v3.gff: is okay. 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22572990 22573061 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22572990 22573010 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22568081 22568323 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22568081 22568323 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22566859 22567246 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 397s Warning: unexpected tab character in last column, line truncated: 397s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22566977 22567246 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 397s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay. 397s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay. 397s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay. 397s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay. 397s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay. 397s /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff: is okay. 397s autopkgtest [21:41:51]: test run-tests: -----------------------] 398s autopkgtest [21:41:52]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 398s run-tests PASS 398s autopkgtest [21:41:52]: @@@@@@@@@@@@@@@@@@@@ summary 398s run-tests PASS 421s nova [W] Using flock in scalingstack-bos01-ppc64el 421s Creating nova instance adt-oracular-ppc64el-gffread-20240709-213514-juju-7f2275-prod-proposed-migration-environment-3-0bb22842-ca74-4e1b-a80c-9ed2ab646d8a from image adt/ubuntu-oracular-ppc64el-server-20240709.img (UUID 00afe604-29ba-4b0a-a664-95a81aacf50b)...