0s autopkgtest [01:03:18]: starting date and time: 2024-06-21 01:03:18+0000 0s autopkgtest [01:03:18]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [01:03:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.91ypz6e_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-12.secgroup --name adt-oracular-ppc64el-gffread-20240621-010318-juju-7f2275-prod-proposed-migration-environment-2-81c72290-3ac5-4753-b0e3-289ab1baea42 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 157s autopkgtest [01:05:55]: testbed dpkg architecture: ppc64el 157s autopkgtest [01:05:55]: testbed apt version: 2.9.5 157s autopkgtest [01:05:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 158s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 158s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [42.3 kB] 158s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [394 kB] 159s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 159s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 159s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [58.4 kB] 159s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1860 B] 159s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [337 kB] 159s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [2532 B] 159s Fetched 956 kB in 1s (1029 kB/s) 159s Reading package lists... 161s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 162s The following packages will be upgraded: 162s libzstd1 zstd 162s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 1201 kB of archives. 162s After this operation, 74.8 kB of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el libzstd1 ppc64el 1.5.6+dfsg-1 [396 kB] 162s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el zstd ppc64el 1.5.6+dfsg-1 [805 kB] 163s Fetched 1201 kB in 1s (2085 kB/s) 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72614 files and directories currently installed.) 163s Preparing to unpack .../libzstd1_1.5.6+dfsg-1_ppc64el.deb ... 163s Unpacking libzstd1:ppc64el (1.5.6+dfsg-1) over (1.5.5+dfsg2-2build1) ... 164s Setting up libzstd1:ppc64el (1.5.6+dfsg-1) ... 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72614 files and directories currently installed.) 164s Preparing to unpack .../zstd_1.5.6+dfsg-1_ppc64el.deb ... 164s Unpacking zstd (1.5.6+dfsg-1) over (1.5.5+dfsg2-2build1) ... 164s Setting up zstd (1.5.6+dfsg-1) ... 164s Processing triggers for man-db (2.12.1-2) ... 165s Processing triggers for libc-bin (2.39-0ubuntu9) ... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 166s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 166s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 166s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 167s Reading package lists... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Calculating upgrade... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s autopkgtest [01:06:09]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 171s autopkgtest [01:06:09]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread 173s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (dsc) [2577 B] 173s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (tar) [404 kB] 173s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (diff) [8940 B] 173s gpgv: Signature made Thu Jun 20 19:11:39 2024 UTC 173s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 173s gpgv: issuer "emollier@debian.org" 173s gpgv: Can't check signature: No public key 173s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-5.dsc: no acceptable signature found 173s autopkgtest [01:06:11]: testing package gffread version 0.12.7-5 174s autopkgtest [01:06:12]: build not needed 174s autopkgtest [01:06:12]: test run-tests: preparing testbed 175s Reading package lists... 175s Building dependency tree... 175s Reading state information... 176s Starting pkgProblemResolver with broken count: 0 176s Starting 2 pkgProblemResolver with broken count: 0 176s Done 176s The following additional packages will be installed: 176s apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test 176s bioperl blt bowtie2 cnvkit cutadapt diamond-aligner emboss-data emboss-test 176s fontconfig fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 176s fonts-mathjax fonts-urw-base35 gbrowse gcc-13-base genometools-common 176s gff2aplot gff2ps gffread htslib-test javascript-common 176s libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl 176s libanyevent-perl libapache-dbi-perl libapache2-mod-perl2 libapr1t64 176s libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64 libasan8 libatomic1 176s libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl 176s libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3 176s libboost-dev libboost1.83-dev libcairo2 libcapture-tiny-perl libcgi-pm-perl 176s libcgi-session-perl libclass-data-inheritable-perl libclone-perl 176s libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl 176s libdbd-sqlite3-perl libdbi-perl libdevel-stacktrace-perl 176s libdevel-symdump-perl libencode-locale-perl libexception-class-perl 176s libexporter-tiny-perl libfile-listing-perl libfontenc1 libgcc-13-dev 176s libgclib3t64 libgd-perl libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 176s libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhts3t64 176s libhtscodecs2 libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl 176s libhttp-message-perl libhttp-negotiate-perl libice6 libimagequant0 176s libio-html-perl libio-socket-ssl-perl libio-string-perl libitm1 176s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 176s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 176s libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js 176s libjs-modernizr libjs-popper.js libjs-prettify libjs-prototype 176s libjs-scriptaculous libjs-sifter.js libjs-twitter-bootstrap-datepicker 176s libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblist-moreutils-perl 176s liblist-moreutils-xs-perl liblsan0 liblua5.1-0 liblua5.4-0 176s liblwp-mediatypes-perl liblwp-protocol-https-perl libmbedcrypto7t64 176s libmbedtls14t64 libmbedx509-1t64 libnet-http-perl libnet-ssleay-perl 176s libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 176s libpaper-utils libpaper1 libpixman-1-0 libpq5 libqhull-r8.0 libquadmath0 176s libraqm0 libsm6 libstatistics-descriptive-perl libstdc++-13-dev 176s libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl 176s libtest-deep-perl libtest-differences-perl libtest-exception-perl 176s libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0 176s libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl libtsan2 libubsan1 176s liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 libwww-perl 176s libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl 176s libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl 176s libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 ncbi-blast+ 176s ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css optimir 176s pandoc pandoc-data perl-openssl-defaults pigz proteinortho 176s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 176s python3-biopython python3-brotli python3-cairo python3-contourpy 176s python3-cutadapt python3-cycler python3-dateutil python3-decorator 176s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 176s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 176s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 176s python3-packaging python3-pandas python3-pandas-lib python3-pil 176s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 176s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 176s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 176s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 176s python3-unicodedata2 python3-xopen python3-zipp r-base-core 176s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 176s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 176s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 176s r-bioc-delayedarray r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb 176s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 176s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 176s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 176s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 176s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 176s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 176s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 176s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 176s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 176s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 176s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 176s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 176s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 176s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 176s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 176s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 176s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 176s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 176s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 176s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 176s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 176s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 176s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 176s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 176s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 176s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 176s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 176s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 176s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 176s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 176s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 176s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 176s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 176s xfonts-utils xml-core zip zlib1g-dev 176s Suggested packages: 176s apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser 176s bedtools blt-demo bowtie2-examples valgrind fonts-freefont-otf 176s | fonts-freefont-ttf fonts-texgyre gbrowse-data gbrowse-calign 176s libfile-nfslock-perl postscript-viewer libev-perl libevent-perl 176s libio-async-perl libpoe-perl libtask-weaken-perl libxml-sax-expatxs-perl 176s libboost-doc libboost1.83-doc libboost-atomic1.83-dev 176s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 176s libboost-contract1.83-dev libboost-coroutine1.83-dev 176s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 176s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 176s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 176s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 176s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 176s libboost-numpy1.83-dev libboost-program-options1.83-dev 176s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 176s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 176s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 176s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 176s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 176s libmldbm-perl libnet-daemon-perl libsql-statement-perl libdata-dump-perl 176s libio-compress-brotli-perl libjs-jquery-ui-docs fonts-mathjax-extras 176s fonts-stix libjs-mathjax-doc liblcms2-utils libcrypt-ssleay-perl 176s libstdc++-13-doc tcl8.6 tk8.6 tre-agrep libsub-name-perl 176s libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl nodejs 176s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 176s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 176s ruby libjs-katex citation-style-language-styles debhelper bwa clustalo 176s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 176s probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml 176s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 176s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 176s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 176s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 176s python-mpmath-doc python3-gmpy2 python3-gdal python3-pydot 176s python3-pygraphviz gcc gfortran python-numpy-doc python3-dev python3-pytest 176s python-pandas-doc python3-statsmodels python-pil-doc python-pomegranate-doc 176s python-pybedtools-doc pdf-viewer python3-egenix-mxtexttools 176s python-reportlab-doc rl-accel rl-renderpm python-scipy-doc python3-dap 176s python-sklearn-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 176s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-bioc-go.db 176s r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 176s r-cran-testthat r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 176s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 176s r-cran-batchtools r-cran-mockery r-cran-webmockr r-cran-biocmanager 176s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 176s r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils r-bioc-edger 176s r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 176s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 176s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs 176s r-cran-rmysql r-cran-polyclip r-cran-lubridate r-cran-sp 176s r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 176s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 176s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 176s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 176s r-cran-pkgload r-cran-plm r-cran-zoo cwltool cwltool | cwl-runner 176s sgml-base-doc sqlite3-doc 176s Recommended packages: 176s ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl 176s libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl med-config tcsh 176s | csh | c-shell graphicsmagick | imagemagick ghostscript gv 176s | postscript-viewer libalgorithm-diff-xs-perl libasync-interrupt-perl 176s libev-perl | libevent-perl libguard-perl libapache2-reload-perl 176s libbsd-resource-perl libbio-scf-perl libberkeleydb-perl libgd-svg-perl 176s bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl 176s libarray-compare-perl libbio-asn1-entrezgene-perl libconvert-binary-c-perl 176s libdbd-mysql-perl libgraph-perl libgraphviz-perl libhtml-tableextract-perl 176s libpostscript-perl libsoap-lite-perl libsort-naturally-perl 176s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 176s libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl 176s libxml-sax-writer-perl libxml-writer-perl libcgi-fast-perl 176s libfreezethaw-perl perl-tk libxml-libxslt-perl libmldbm-perl libxml-perl 176s libhtml-format-perl node-jquery libjson-xs-perl libdata-dump-perl 176s libhtml-form-perl libmailtools-perl libxml-sax-expat-perl 176s python-biopython-doc python3-pytest python3-psutil python3-bs4 176s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 176s python3-odf python3-openpyxl python3-tables python3-olefile 176s fonts-dejavu-extra g++ | c++-compiler isympy-common r-recommended r-base-dev 176s r-doc-html r-cran-testthat r-cran-future r-cran-thematic r-cran-fastmatch 176s r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr r-cran-mockery 176s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 176s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 176s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-zoo r-cran-markdown 176s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg 176s r-cran-testit r-cran-pkgload r-cran-hexbin r-cran-mapproj r-cran-maps 176s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf 176s r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-readr 176s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 176s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 176s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 176s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-rsconnect r-cran-downlit 176s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-dt r-cran-mockr 176s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv 176s trinityrnaseq libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 176s x11-utils x11-xserver-utils 176s The following NEW packages will be installed: 176s apache2 apache2-bin apache2-data apache2-utils augustus-doc 176s autopkgtest-satdep bedtools-test bioperl blt bowtie2 cnvkit cutadapt 176s diamond-aligner emboss-data emboss-test fontconfig fonts-font-awesome 176s fonts-glyphicons-halflings fonts-lyx fonts-mathjax fonts-urw-base35 gbrowse 176s gcc-13-base genometools-common gff2aplot gff2ps gffread htslib-test 176s javascript-common libalgorithm-diff-perl libanyevent-cachedns-perl 176s libanyevent-http-perl libanyevent-perl libapache-dbi-perl 176s libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap 176s libaprutil1t64 libasan8 libatomic1 libbio-coordinate-perl 176s libbio-db-biofetch-perl libbio-db-gff-perl libbio-db-seqfeature-perl 176s libbio-graphics-perl libbio-perl-perl libblas3 libboost-dev libboost1.83-dev 176s libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl 176s libclass-data-inheritable-perl libclone-perl libcommon-sense-perl 176s libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl 176s libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl 176s libexception-class-perl libexporter-tiny-perl libfile-listing-perl 176s libfontenc1 libgcc-13-dev libgclib3t64 libgd-perl libgfortran5 libgomp1 176s libgraphite2-3 libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl 176s libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl 176s libhttp-daemon-perl libhttp-date-perl libhttp-message-perl 176s libhttp-negotiate-perl libice6 libimagequant0 libio-html-perl 176s libio-socket-ssl-perl libio-string-perl libitm1 libjs-bootstrap 176s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 176s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 176s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 176s libjs-prettify libjs-prototype libjs-scriptaculous libjs-sifter.js 176s libjs-twitter-bootstrap-datepicker libjson-perl liblapack3 liblbfgsb0 176s liblcms2-2 liblist-moreutils-perl liblist-moreutils-xs-perl liblsan0 176s liblua5.1-0 liblua5.4-0 liblwp-mediatypes-perl liblwp-protocol-https-perl 176s libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libnet-http-perl 176s libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 176s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5 176s libqhull-r8.0 libquadmath0 libraqm0 libsm6 libstatistics-descriptive-perl 176s libstdc++-13-dev libstring-approx-perl libsub-uplevel-perl libtcl8.6 176s libterm-readkey-perl libtest-deep-perl libtest-differences-perl 176s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 176s libthai-data libthai0 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl 176s libtsan2 libubsan1 liburi-perl libvm-ec2-perl libwebpdemux2 libwebpmux3 176s libwww-perl libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 176s libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl 176s libxml-sax-perl libxml-simple-perl libxrender1 libxslt1.1 libxss1 libxt6t64 176s ncbi-blast+ ncbi-data node-bootstrap-sass node-html5shiv node-normalize.css 176s optimir pandoc pandoc-data perl-openssl-defaults pigz proteinortho 176s python-matplotlib-data python3-appdirs python3-argcomplete python3-argh 176s python3-biopython python3-brotli python3-cairo python3-contourpy 176s python3-cutadapt python3-cycler python3-dateutil python3-decorator 176s python3-dnaio python3-fonttools python3-freetype python3-fs python3-gffutils 176s python3-importlib-metadata python3-joblib python3-kiwisolver python3-lxml 176s python3-lz4 python3-matplotlib python3-mpmath python3-networkx python3-numpy 176s python3-packaging python3-pandas python3-pandas-lib python3-pil 176s python3-pil.imagetk python3-pomegranate python3-pybedtools python3-pyfaidx 176s python3-pysam python3-reportlab python3-rlpycairo python3-scipy 176s python3-simplejson python3-sklearn python3-sklearn-lib python3-sympy 176s python3-threadpoolctl python3-tk python3-tz python3-ufolib2 176s python3-unicodedata2 python3-xopen python3-zipp r-base-core 176s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 176s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 176s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 176s r-bioc-delayedarray r-bioc-dnacopy r-bioc-ensembldb r-bioc-genomeinfodb 176s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 176s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 176s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 176s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 176s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 176s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 176s r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 176s r-cran-bslib r-cran-cachem r-cran-checkmate r-cran-chron r-cran-cli 176s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 176s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 176s r-cran-dbplyr r-cran-deldir r-cran-dichromat r-cran-digest r-cran-dplyr 176s r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock 176s r-cran-fontawesome r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 176s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 176s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc 176s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 176s r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg 176s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 176s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 176s r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass 176s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 176s r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl r-cran-pillar 176s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 176s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 176s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 176s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rpart 176s r-cran-rsqlite r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny 176s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival 176s r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 176s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-withr 176s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml samtools 176s seqan-apps sgml-base sqlite3 tk8.6-blt2.5 trinityrnaseq-examples 176s unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings 176s xfonts-utils xml-core zip zlib1g-dev 176s 0 upgraded, 412 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 867 MB/867 MB of archives. 176s After this operation, 2950 MB of additional disk space will be used. 176s Get:1 /tmp/autopkgtest.IaKABx/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [900 B] 176s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapr1t64 ppc64el 1.7.2-3.2 [133 kB] 177s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1t64 ppc64el 1.6.3-2ubuntu1 [112 kB] 177s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1-dbd-sqlite3 ppc64el 1.6.3-2ubuntu1 [12.2 kB] 177s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libaprutil1-ldap ppc64el 1.6.3-2ubuntu1 [9230 B] 177s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblua5.4-0 ppc64el 5.4.6-3build2 [216 kB] 177s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-bin ppc64el 2.4.59-2ubuntu2 [1558 kB] 177s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-data all 2.4.59-2ubuntu2 [163 kB] 177s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2-utils ppc64el 2.4.59-2ubuntu2 [102 kB] 177s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el apache2 ppc64el 2.4.59-2ubuntu2 [90.3 kB] 177s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el sgml-base all 1.31 [11.4 kB] 177s Get:12 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pigz ppc64el 2.8-1 [76.3 kB] 177s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB] 178s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bedtools-test all 2.31.1+dfsg-2 [18.2 MB] 178s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-string-perl all 1.08-4 [11.1 kB] 178s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdata-stag-perl all 0.14-3 [372 kB] 178s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-perl-perl all 1.7.8-1 [2580 kB] 178s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclass-data-inheritable-perl all 0.08-3 [8084 B] 178s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 178s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexception-class-perl all 1.45-1 [28.6 kB] 178s Get:21 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-deep-perl all 1.204-1 [47.1 kB] 178s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcapture-tiny-perl all 0.48-2 [20.2 kB] 178s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libalgorithm-diff-perl all 1.201-1 [41.8 kB] 178s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtext-diff-perl all 1.45-2 [25.6 kB] 178s Get:25 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-differences-perl all 0.71-1 [15.8 kB] 178s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libsub-uplevel-perl all 0.2800-3 [11.6 kB] 178s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-exception-perl all 0.43-3 [13.4 kB] 178s Get:28 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-warn-perl all 0.37-2 [12.6 kB] 178s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtest-most-perl all 0.38-1 [21.5 kB] 178s Get:30 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bioperl all 1.7.8-1 [216 kB] 178s Get:31 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 178s Get:32 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 178s Get:33 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 178s Get:34 http://ftpmaster.internal/ubuntu oracular/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 178s Get:35 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 178s Get:36 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 178s Get:37 http://ftpmaster.internal/ubuntu oracular/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7build1 [784 kB] 178s Get:38 http://ftpmaster.internal/ubuntu oracular/main ppc64el blt ppc64el 2.5.3+dfsg-7build1 [4840 B] 178s Get:39 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 178s Get:40 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 178s Get:41 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 178s Get:42 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 179s Get:43 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tk ppc64el 3.12.3-0ubuntu1 [105 kB] 179s Get:44 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pil.imagetk ppc64el 10.3.0-2 [9572 B] 179s Get:45 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgomp1 ppc64el 14.1.0-1ubuntu1 [161 kB] 179s Get:46 http://ftpmaster.internal/ubuntu oracular/main ppc64el libimagequant0 ppc64el 2.18.0-1build1 [43.2 kB] 179s Get:47 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblcms2-2 ppc64el 2.14-2build1 [233 kB] 179s Get:48 http://ftpmaster.internal/ubuntu oracular/main ppc64el libopenjp2-7 ppc64el 2.5.0-2build3 [239 kB] 179s Get:49 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB] 179s Get:50 http://ftpmaster.internal/ubuntu oracular/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 179s Get:51 http://ftpmaster.internal/ubuntu oracular/main ppc64el libraqm0 ppc64el 0.10.1-1build1 [19.4 kB] 179s Get:52 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpdemux2 ppc64el 1.4.0-0.1 [14.1 kB] 179s Get:53 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwebpmux3 ppc64el 1.4.0-0.1 [31.4 kB] 179s Get:54 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-pil ppc64el 10.3.0-2 [491 kB] 179s Get:55 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 179s Get:56 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-render0 ppc64el 1.17.0-2 [17.2 kB] 179s Get:57 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxcb-shm0 ppc64el 1.17.0-2 [5980 B] 179s Get:58 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB] 179s Get:59 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-cairo ppc64el 1.26.0-1 [129 kB] 179s Get:60 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-freetype all 2.4.0-2 [81.3 kB] 179s Get:61 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 179s Get:62 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfontenc1 ppc64el 1:1.1.8-1build1 [15.8 kB] 179s Get:63 http://ftpmaster.internal/ubuntu oracular/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 179s Get:64 http://ftpmaster.internal/ubuntu oracular/main ppc64el xfonts-utils ppc64el 1:7.7+6build3 [113 kB] 179s Get:65 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 179s Get:66 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-reportlab all 4.2.0-2 [1130 kB] 179s Get:67 http://ftpmaster.internal/ubuntu oracular/main ppc64el xml-core all 0.19 [20.3 kB] 179s Get:68 http://ftpmaster.internal/ubuntu oracular/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 179s Get:69 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-biopython ppc64el 1.83+dfsg1-3 [1696 kB] 179s Get:70 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 179s Get:71 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 179s Get:72 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-lyx all 2.4.0-1 [171 kB] 179s Get:73 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB] 179s Get:74 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-dateutil all 2.9.0-2 [80.3 kB] 179s Get:75 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-contourpy ppc64el 1.0.7-3 [200 kB] 179s Get:76 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cycler all 0.12.1-1 [9716 B] 179s Get:77 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-brotli ppc64el 1.1.0-2build2 [413 kB] 179s Get:78 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 179s Get:79 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1build1 [33.0 kB] 179s Get:80 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-scipy ppc64el 1.12.0-2 [18.0 MB] 180s Get:81 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 180s Get:82 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mpmath all 1.3.0-1 [425 kB] 180s Get:83 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sympy all 1.12-8 [3966 kB] 180s Get:84 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-tz all 2024.1-2 [31.4 kB] 180s Get:85 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 180s Get:86 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fs all 2.4.16-4 [91.3 kB] 180s Get:87 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 180s Get:88 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 180s Get:89 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build4 [27.8 kB] 180s Get:90 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1build1 [367 kB] 180s Get:91 http://ftpmaster.internal/ubuntu oracular/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 180s Get:92 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-fonttools ppc64el 4.46.0-1build2 [1473 kB] 180s Get:93 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-kiwisolver ppc64el 1.4.5-1 [55.5 kB] 180s Get:94 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 180s Get:95 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6build1 [225 kB] 180s Get:96 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-matplotlib ppc64el 3.6.3-2ubuntu1 [6175 kB] 180s Get:97 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-8 [4587 kB] 181s Get:98 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pandas all 2.1.4+dfsg-8 [3042 kB] 181s Get:99 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-joblib all 1.3.2-2 [208 kB] 181s Get:100 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 181s Get:101 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pomegranate ppc64el 0.14.8-6 [2700 kB] 181s Get:102 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-zipp all 3.19.2-2 [10.2 kB] 181s Get:103 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-importlib-metadata all 7.1.0-1 [19.2 kB] 181s Get:104 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pyfaidx all 0.8.1.1-2 [29.6 kB] 181s Get:105 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 181s Get:106 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 182s Get:107 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pysam ppc64el 0.22.1+ds-2 [3818 kB] 182s Get:108 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 182s Get:109 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sklearn-lib ppc64el 1.4.2+dfsg-1 [3761 kB] 183s Get:110 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-sklearn all 1.4.2+dfsg-1 [2261 kB] 183s Get:111 http://ftpmaster.internal/ubuntu oracular/main ppc64el zip ppc64el 3.0-13build1 [198 kB] 183s Get:112 http://ftpmaster.internal/ubuntu oracular/main ppc64el unzip ppc64el 6.0-28ubuntu5 [196 kB] 183s Get:113 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB] 183s Get:114 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B] 183s Get:115 http://ftpmaster.internal/ubuntu oracular/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 183s Get:116 http://ftpmaster.internal/ubuntu oracular/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 183s Get:117 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 183s Get:118 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 183s Get:119 http://ftpmaster.internal/ubuntu oracular/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 183s Get:120 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpango-1.0-0 ppc64el 1.54.0+ds-1 [270 kB] 183s Get:121 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangoft2-1.0-0 ppc64el 1.54.0+ds-1 [49.9 kB] 183s Get:122 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpangocairo-1.0-0 ppc64el 1.54.0+ds-1 [30.4 kB] 183s Get:123 http://ftpmaster.internal/ubuntu oracular/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 183s Get:124 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 183s Get:125 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 183s Get:126 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-base-core ppc64el 4.4.1-1 [28.9 MB] 188s Get:127 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB] 188s Get:128 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-dnacopy ppc64el 1.76.0-1 [387 kB] 188s Get:129 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cnvkit all 0.9.10-2 [20.5 MB] 191s Get:130 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-xopen all 1.7.0-2 [17.0 kB] 191s Get:131 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-dnaio ppc64el 1.2.0-2build1 [90.1 kB] 191s Get:132 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cutadapt ppc64el 4.7-2 [209 kB] 191s Get:133 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cutadapt all 4.7-2 [6766 B] 192s Get:134 http://ftpmaster.internal/ubuntu oracular/universe ppc64el diamond-aligner ppc64el 2.1.9-1 [1959 kB] 192s Get:135 http://ftpmaster.internal/ubuntu oracular/universe ppc64el emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB] 202s Get:136 http://ftpmaster.internal/ubuntu oracular/universe ppc64el emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB] 202s Get:137 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 202s Get:138 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 202s Get:139 http://ftpmaster.internal/ubuntu oracular/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 203s Get:140 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgd-perl ppc64el 2.78-1build3 [129 kB] 203s Get:141 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdevel-symdump-perl all 2.18-5 [12.6 kB] 203s Get:142 http://ftpmaster.internal/ubuntu oracular/main ppc64el liburi-perl all 5.28-1 [88.1 kB] 203s Get:143 http://ftpmaster.internal/ubuntu oracular/main ppc64el libencode-locale-perl all 1.05-3 [11.6 kB] 203s Get:144 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtimedate-perl all 2.3300-2 [34.0 kB] 203s Get:145 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-date-perl all 6.06-1 [10.2 kB] 203s Get:146 http://ftpmaster.internal/ubuntu oracular/main ppc64el libfile-listing-perl all 6.16-1 [11.3 kB] 203s Get:147 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-tagset-perl all 3.24-1 [14.1 kB] 203s Get:148 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-parser-perl ppc64el 3.82-1 [91.2 kB] 203s Get:149 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhtml-tree-perl all 5.07-3 [200 kB] 203s Get:150 http://ftpmaster.internal/ubuntu oracular/main ppc64el libclone-perl ppc64el 0.46-1build3 [11.2 kB] 203s Get:151 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-html-perl all 1.004-3 [15.9 kB] 203s Get:152 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblwp-mediatypes-perl all 6.04-2 [20.1 kB] 203s Get:153 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB] 203s Get:154 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-cookies-perl all 6.11-1 [18.2 kB] 203s Get:155 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-negotiate-perl all 6.01-2 [12.4 kB] 203s Get:156 http://ftpmaster.internal/ubuntu oracular/main ppc64el perl-openssl-defaults ppc64el 7build3 [6628 B] 203s Get:157 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnet-ssleay-perl ppc64el 1.94-1build4 [327 kB] 203s Get:158 http://ftpmaster.internal/ubuntu oracular/main ppc64el libio-socket-ssl-perl all 2.085-1 [195 kB] 203s Get:159 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnet-http-perl all 6.23-1 [22.3 kB] 203s Get:160 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblwp-protocol-https-perl all 6.14-1 [9040 B] 203s Get:161 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtry-tiny-perl all 0.31-2 [20.8 kB] 203s Get:162 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwww-robotrules-perl all 6.02-1 [12.6 kB] 203s Get:163 http://ftpmaster.internal/ubuntu oracular/main ppc64el libwww-perl all 6.77-1 [138 kB] 203s Get:164 http://ftpmaster.internal/ubuntu oracular/main ppc64el libapache2-mod-perl2 ppc64el 2.0.13-1build5 [813 kB] 203s Get:165 http://ftpmaster.internal/ubuntu oracular/main ppc64el libdbi-perl ppc64el 1.643-4build3 [729 kB] 203s Get:166 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libapache-dbi-perl all 1.12-3 [40.5 kB] 203s Get:167 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB] 203s Get:168 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcgi-pm-perl all 4.65-1 [185 kB] 203s Get:169 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-gff-perl all 1.7.4-1 [273 kB] 203s Get:170 http://ftpmaster.internal/ubuntu oracular/main ppc64el libpq5 ppc64el 16.3-1 [171 kB] 203s Get:171 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdbd-pg-perl ppc64el 3.18.0-1build3 [208 kB] 203s Get:172 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libdbd-sqlite3-perl ppc64el 1.74-1build3 [170 kB] 203s Get:173 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-db-seqfeature-perl all 1.7.4-2 [169 kB] 204s Get:174 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-graphics-perl all 2.40-6 [601 kB] 204s Get:175 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libbio-coordinate-perl all 1.7.1-4 [56.4 kB] 204s Get:176 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libcgi-session-perl all 4.48-4 [108 kB] 204s Get:177 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjson-perl all 4.10000-1 [81.9 kB] 204s Get:178 http://ftpmaster.internal/ubuntu oracular/main ppc64el libexporter-tiny-perl all 1.006002-1 [36.8 kB] 204s Get:179 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblist-moreutils-xs-perl ppc64el 0.430-4 [44.5 kB] 204s Get:180 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblist-moreutils-perl all 0.430-2 [38.2 kB] 204s Get:181 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libstatistics-descriptive-perl all 3.0801-1 [58.7 kB] 204s Get:182 http://ftpmaster.internal/ubuntu oracular/main ppc64el libhttp-daemon-perl all 6.16-1 [22.4 kB] 204s Get:183 http://ftpmaster.internal/ubuntu oracular/main ppc64el libterm-readkey-perl ppc64el 2.38-2build4 [24.7 kB] 204s Get:184 http://ftpmaster.internal/ubuntu oracular/main ppc64el sqlite3 ppc64el 3.46.0-1 [171 kB] 204s Get:185 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prototype all 1.7.3-1 [44.8 kB] 204s Get:186 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-scriptaculous all 1.9.0-3 [92.6 kB] 204s Get:187 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-perl ppc64el 7.170-2build6 [368 kB] 204s Get:188 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-cachedns-perl all 0.08-3 [7216 B] 204s Get:189 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcommon-sense-perl ppc64el 3.75-3build3 [20.4 kB] 204s Get:190 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libanyevent-http-perl all 2.25-2 [30.3 kB] 204s Get:191 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libstring-approx-perl ppc64el 3.28-2build4 [36.9 kB] 204s Get:192 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-namespacesupport-perl all 1.12-2 [13.5 kB] 204s Get:193 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-sax-base-perl all 1.09-3 [18.9 kB] 204s Get:194 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-sax-perl all 1.02+dfsg-3 [57.0 kB] 204s Get:195 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-libxml-perl ppc64el 2.0207+dfsg+really+2.0134-2 [309 kB] 204s Get:196 http://ftpmaster.internal/ubuntu oracular/main ppc64el libxml-simple-perl all 2.25-2 [64.1 kB] 204s Get:197 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libvm-ec2-perl all 1.28-4 [766 kB] 204s Get:198 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gbrowse all 2.56+dfsg-12build3 [2181 kB] 204s Get:199 http://ftpmaster.internal/ubuntu oracular/main ppc64el gcc-13-base ppc64el 13.2.0-23ubuntu4 [49.0 kB] 204s Get:200 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gff2aplot ppc64el 2.0-15 [258 kB] 204s Get:201 http://ftpmaster.internal/ubuntu oracular/universe ppc64el gff2ps all 0.98l-6 [63.1 kB] 204s Get:202 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libgclib3t64 ppc64el 0.12.7+ds-5ubuntu3 [199 kB] 204s Get:203 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el gffread ppc64el 0.12.7-5 [68.5 kB] 205s Get:204 http://ftpmaster.internal/ubuntu oracular/universe ppc64el htslib-test all 1.20+ds-1 [1145 kB] 206s Get:205 http://ftpmaster.internal/ubuntu oracular/main ppc64el javascript-common all 11+nmu1 [5936 B] 206s Get:206 http://ftpmaster.internal/ubuntu oracular/main ppc64el libasan8 ppc64el 14.1.0-1ubuntu1 [2971 kB] 208s Get:207 http://ftpmaster.internal/ubuntu oracular/main ppc64el libatomic1 ppc64el 14.1.0-1ubuntu1 [10.7 kB] 208s Get:208 http://ftpmaster.internal/ubuntu oracular/main ppc64el libitm1 ppc64el 14.1.0-1ubuntu1 [32.4 kB] 208s Get:209 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblsan0 ppc64el 14.1.0-1ubuntu1 [1328 kB] 208s Get:210 http://ftpmaster.internal/ubuntu oracular/main ppc64el libtsan2 ppc64el 14.1.0-1ubuntu1 [2708 kB] 209s Get:211 http://ftpmaster.internal/ubuntu oracular/main ppc64el libubsan1 ppc64el 14.1.0-1ubuntu1 [1196 kB] 209s Get:212 http://ftpmaster.internal/ubuntu oracular/main ppc64el libquadmath0 ppc64el 14.1.0-1ubuntu1 [158 kB] 209s Get:213 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgcc-13-dev ppc64el 13.2.0-23ubuntu4 [1580 kB] 210s Get:214 http://ftpmaster.internal/ubuntu oracular/main ppc64el libstdc++-13-dev ppc64el 13.2.0-23ubuntu4 [2512 kB] 210s Get:215 http://ftpmaster.internal/ubuntu oracular/main ppc64el libboost1.83-dev ppc64el 1.83.0-3ubuntu1 [10.7 MB] 212s Get:216 http://ftpmaster.internal/ubuntu oracular/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B] 212s Get:217 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 212s Get:218 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 212s Get:219 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 212s Get:220 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB] 212s Get:221 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB] 212s Get:222 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 212s Get:223 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 212s Get:224 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 212s Get:225 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 212s Get:226 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 212s Get:227 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 212s Get:228 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 212s Get:229 http://ftpmaster.internal/ubuntu oracular/universe ppc64el liblua5.1-0 ppc64el 5.1.5-9build2 [157 kB] 212s Get:230 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.8-1 [267 kB] 212s Get:231 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedx509-1t64 ppc64el 2.28.8-1 [51.7 kB] 212s Get:232 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libmbedtls14t64 ppc64el 2.28.8-1 [90.6 kB] 212s Get:233 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libtre5 ppc64el 0.8.0-7 [56.1 kB] 212s Get:234 http://ftpmaster.internal/ubuntu oracular/universe ppc64el ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB] 212s Get:235 http://ftpmaster.internal/ubuntu oracular/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build2 [13.5 MB] 214s Get:236 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB] 214s Get:237 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 214s Get:238 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB] 214s Get:239 http://ftpmaster.internal/ubuntu oracular/universe ppc64el bowtie2 ppc64el 2.5.3-1 [1371 kB] 214s Get:240 http://ftpmaster.internal/ubuntu oracular/universe ppc64el samtools ppc64el 1.20-3 [676 kB] 214s Get:241 http://ftpmaster.internal/ubuntu oracular/universe ppc64el optimir all 1.2-1 [1128 kB] 215s Get:242 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc-data all 3.1.3-2build2 [78.3 kB] 215s Get:243 http://ftpmaster.internal/ubuntu oracular/universe ppc64el pandoc ppc64el 3.1.3+ds-3build1 [22.5 MB] 217s Get:244 http://ftpmaster.internal/ubuntu oracular/universe ppc64el proteinortho ppc64el 6.3.1+dfsg-1 [374 kB] 217s Get:245 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-argcomplete all 3.4.0-1 [34.6 kB] 217s Get:246 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-argh all 0.31.2-1 [26.9 kB] 217s Get:247 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-simplejson ppc64el 3.19.2-1build2 [60.6 kB] 217s Get:248 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-gffutils all 0.13-1 [1081 kB] 217s Get:249 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pybedtools ppc64el 0.10.0-1 [12.3 MB] 218s Get:250 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biobase ppc64el 2.62.0-1 [2138 kB] 218s Get:251 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB] 218s Get:252 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB] 219s Get:253 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbi all 1.2.3-1 [853 kB] 219s Get:254 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB] 219s Get:255 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB] 219s Get:256 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rlang ppc64el 1.1.4-1 [1742 kB] 219s Get:257 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB] 219s Get:258 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB] 219s Get:259 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 219s Get:260 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 219s Get:261 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB] 219s Get:262 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB] 219s Get:263 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB] 219s Get:264 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB] 219s Get:265 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 219s Get:266 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB] 219s Get:267 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB] 219s Get:268 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rsqlite ppc64el 2.3.7-1 [1541 kB] 219s Get:269 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-curl ppc64el 5.2.1+dfsg-1 [182 kB] 219s Get:270 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB] 220s Get:271 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mime ppc64el 0.12-2 [35.9 kB] 220s Get:272 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB] 220s Get:273 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB] 220s Get:274 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2build2 [406 kB] 220s Get:275 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 220s Get:276 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB] 220s Get:277 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-png ppc64el 0.1-8-1build2 [44.3 kB] 220s Get:278 http://ftpmaster.internal/ubuntu oracular/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu2 [902 kB] 220s Get:279 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 220s Get:280 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB] 220s Get:281 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB] 220s Get:282 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1build2 [797 kB] 220s Get:283 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 221s Get:284 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 221s Get:285 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB] 221s Get:286 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biostrings ppc64el 2.70.3+dfsg-1 [13.7 MB] 222s Get:287 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 222s Get:288 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 223s Get:289 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB] 223s Get:290 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lazyeval ppc64el 0.2.2-1build1 [144 kB] 223s Get:291 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 223s Get:292 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB] 223s Get:293 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 223s Get:294 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB] 223s Get:295 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB] 223s Get:296 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 223s Get:297 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB] 223s Get:298 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB] 223s Get:299 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyselect ppc64el 1.2.1+dfsg-1 [222 kB] 223s Get:300 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB] 223s Get:301 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB] 223s Get:302 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB] 223s Get:303 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB] 223s Get:304 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB] 224s Get:305 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 224s Get:306 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-filelock ppc64el 1.0.3-1 [30.3 kB] 224s Get:307 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 224s Get:308 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 225s Get:309 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-formatr all 1.14-2 [152 kB] 225s Get:310 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB] 225s Get:311 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 225s Get:312 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 225s Get:313 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB] 225s Get:314 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-codetools all 0.2-20-1 [90.5 kB] 225s Get:315 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B] 225s Get:316 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB] 225s Get:317 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xml ppc64el 3.99-0.16.1-1 [1744 kB] 225s Get:318 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB] 225s Get:319 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB] 225s Get:320 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB] 225s Get:321 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-digest ppc64el 0.6.35-1 [220 kB] 225s Get:322 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 225s Get:323 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xml2 ppc64el 1.3.6-1 [328 kB] 225s Get:324 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 226s Get:325 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-farver ppc64el 2.1.1-2 [1385 kB] 226s Get:326 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-labeling all 0.4.3-1 [62.1 kB] 226s Get:327 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-colorspace ppc64el 2.1-0+dfsg-1 [1542 kB] 226s Get:328 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-munsell all 0.5.1-1 [213 kB] 226s Get:329 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 226s Get:330 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB] 226s Get:331 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-scales all 1.3.0-1 [603 kB] 226s Get:332 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gtable all 0.3.5+dfsg-1 [192 kB] 226s Get:333 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-isoband ppc64el 0.2.7-1 [1486 kB] 226s Get:334 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mass ppc64el 7.3-61-1 [1115 kB] 227s Get:335 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-lattice ppc64el 0.22-6-1 [1340 kB] 227s Get:336 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nlme ppc64el 3.1.165-1 [2328 kB] 227s Get:337 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrix ppc64el 1.7-0-3 [4520 kB] 227s Get:338 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-mgcv ppc64el 1.9-1-1 [3393 kB] 227s Get:339 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 228s Get:340 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-cluster ppc64el 2.1.6-1build1 [569 kB] 228s Get:341 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-survival ppc64el 3.7-0-1 [6309 kB] 228s Get:342 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rpart ppc64el 4.1.23-1build1 [673 kB] 228s Get:343 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-nnet ppc64el 7.3-19-2build1 [119 kB] 228s Get:344 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-foreign ppc64el 0.8.86-1build1 [252 kB] 228s Get:345 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-gridextra all 2.3-3build1 [1024 kB] 228s Get:346 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-data.table ppc64el 1.15.4+dfsg-2.2 [1926 kB] 228s Get:347 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-evaluate all 0.23-1 [90.2 kB] 228s Get:348 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xfun ppc64el 0.44+dfsg-1 [516 kB] 228s Get:349 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-highr all 0.11+dfsg-1 [38.5 kB] 228s Get:350 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-yaml ppc64el 2.3.8-2 [122 kB] 228s Get:351 http://ftpmaster.internal/ubuntu oracular/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 228s Get:352 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-knitr all 1.46+dfsg-1 [911 kB] 228s Get:353 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-backports ppc64el 1.4.1-1 [101 kB] 228s Get:354 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-checkmate ppc64el 2.3.1-1 [721 kB] 229s Get:355 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB] 229s Get:356 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltools ppc64el 0.5.8.1-1 [373 kB] 229s Get:357 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 229s Get:358 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1build2 [232 kB] 229s Get:359 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sass ppc64el 0.4.9+dfsg-1 [1034 kB] 229s Get:360 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 229s Get:361 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB] 229s Get:362 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-tinytex all 0.51-1 [145 kB] 229s Get:363 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-modernizr all 3.13.0-0.1 [101 kB] 229s Get:364 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-littler ppc64el 0.3.20-1 [97.4 kB] 229s Get:365 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 229s Get:366 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB] 229s Get:367 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB] 229s Get:368 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-promises ppc64el 1.3.0+dfsg-1 [289 kB] 229s Get:369 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-httpuv ppc64el 1.6.15+dfsg-1 [521 kB] 229s Get:370 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB] 229s Get:371 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB] 229s Get:372 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB] 229s Get:373 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 229s Get:374 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB] 229s Get:375 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 229s Get:376 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 229s Get:377 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rstudioapi all 0.16.0-1 [287 kB] 229s Get:378 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-htmltable all 2.4.2-1 [381 kB] 229s Get:379 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-viridis all 0.6.5-1 [2770 kB] 230s Get:380 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-formula all 1.2-5-1 [158 kB] 230s Get:381 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-chron ppc64el 2.3-61-2 [187 kB] 230s Get:382 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-jpeg ppc64el 0.1-10-1 [37.0 kB] 230s Get:383 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-deldir ppc64el 2.0-4-1build1 [273 kB] 230s Get:384 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rcppeigen ppc64el 0.3.4.0.0-1build1 [1476 kB] 230s Get:385 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-interp ppc64el 1.1-6-1 [1492 kB] 230s Get:386 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-latticeextra all 0.6-30-1 [2198 kB] 230s Get:387 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-acepack ppc64el 1.4.2-1 [69.8 kB] 230s Get:388 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-hmisc ppc64el 5.1-3-1 [3558 kB] 230s Get:389 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 230s Get:390 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-matrixstats ppc64el 1.3.0-1 [546 kB] 230s Get:391 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 230s Get:392 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB] 230s Get:393 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-s4arrays ppc64el 1.2.0+dfsg-1 [502 kB] 230s Get:394 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-sparsearray ppc64el 1.2.4+dfsg-1 [1222 kB] 230s Get:395 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-delayedarray ppc64el 0.28.0+dfsg-1 [1786 kB] 230s Get:396 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 230s Get:397 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-3build2 [1552 kB] 230s Get:398 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1build2 [3815 kB] 231s Get:399 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicalignments ppc64el 1.38.2-1 [2139 kB] 231s Get:400 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-rjson ppc64el 0.2.21-1 [144 kB] 231s Get:401 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-cran-restfulr ppc64el 0.0.15-1 [380 kB] 231s Get:402 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-rtracklayer ppc64el 1.62.0-1 [5148 kB] 231s Get:403 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 231s Get:404 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-bsgenome all 1.70.2-1 [6975 kB] 232s Get:405 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-variantannotation ppc64el 1.48.1-1build2 [3657 kB] 232s Get:406 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-protgenerics all 1.34.0-1 [225 kB] 232s Get:407 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 232s Get:408 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-biovizbase ppc64el 1.50.0-1 [2666 kB] 233s Get:409 http://ftpmaster.internal/ubuntu oracular/universe ppc64el r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 233s Get:410 http://ftpmaster.internal/ubuntu oracular/universe ppc64el trinityrnaseq-examples ppc64el 2.15.1+dfsg-5build1 [299 MB] 263s Get:411 http://ftpmaster.internal/ubuntu oracular/universe ppc64el genometools-common all 1.6.5+ds-2.2 [194 kB] 263s Get:412 http://ftpmaster.internal/ubuntu oracular/universe ppc64el seqan-apps ppc64el 2.4.0+dfsg-16 [12.7 MB] 265s Preconfiguring packages ... 265s Fetched 867 MB in 1min 28s (9887 kB/s) 265s Selecting previously unselected package libapr1t64:ppc64el. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72615 files and directories currently installed.) 265s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_ppc64el.deb ... 265s Unpacking libapr1t64:ppc64el (1.7.2-3.2) ... 266s Selecting previously unselected package libaprutil1t64:ppc64el. 266s Preparing to unpack .../001-libaprutil1t64_1.6.3-2ubuntu1_ppc64el.deb ... 266s Unpacking libaprutil1t64:ppc64el (1.6.3-2ubuntu1) ... 266s Selecting previously unselected package libaprutil1-dbd-sqlite3:ppc64el. 266s Preparing to unpack .../002-libaprutil1-dbd-sqlite3_1.6.3-2ubuntu1_ppc64el.deb ... 266s Unpacking libaprutil1-dbd-sqlite3:ppc64el (1.6.3-2ubuntu1) ... 266s Selecting previously unselected package libaprutil1-ldap:ppc64el. 266s Preparing to unpack .../003-libaprutil1-ldap_1.6.3-2ubuntu1_ppc64el.deb ... 266s Unpacking libaprutil1-ldap:ppc64el (1.6.3-2ubuntu1) ... 266s Selecting previously unselected package liblua5.4-0:ppc64el. 266s Preparing to unpack .../004-liblua5.4-0_5.4.6-3build2_ppc64el.deb ... 266s Unpacking liblua5.4-0:ppc64el (5.4.6-3build2) ... 266s Selecting previously unselected package apache2-bin. 266s Preparing to unpack .../005-apache2-bin_2.4.59-2ubuntu2_ppc64el.deb ... 266s Unpacking apache2-bin (2.4.59-2ubuntu2) ... 266s Selecting previously unselected package apache2-data. 266s Preparing to unpack .../006-apache2-data_2.4.59-2ubuntu2_all.deb ... 266s Unpacking apache2-data (2.4.59-2ubuntu2) ... 266s Selecting previously unselected package apache2-utils. 266s Preparing to unpack .../007-apache2-utils_2.4.59-2ubuntu2_ppc64el.deb ... 266s Unpacking apache2-utils (2.4.59-2ubuntu2) ... 266s Selecting previously unselected package apache2. 266s Preparing to unpack .../008-apache2_2.4.59-2ubuntu2_ppc64el.deb ... 266s Unpacking apache2 (2.4.59-2ubuntu2) ... 266s Selecting previously unselected package sgml-base. 266s Preparing to unpack .../009-sgml-base_1.31_all.deb ... 266s Unpacking sgml-base (1.31) ... 266s Selecting previously unselected package pigz. 266s Preparing to unpack .../010-pigz_2.8-1_ppc64el.deb ... 266s Unpacking pigz (2.8-1) ... 266s Selecting previously unselected package augustus-doc. 266s Preparing to unpack .../011-augustus-doc_3.5.0+dfsg-4build5_all.deb ... 266s Unpacking augustus-doc (3.5.0+dfsg-4build5) ... 267s Selecting previously unselected package bedtools-test. 267s Preparing to unpack .../012-bedtools-test_2.31.1+dfsg-2_all.deb ... 267s Unpacking bedtools-test (2.31.1+dfsg-2) ... 268s Selecting previously unselected package libio-string-perl. 268s Preparing to unpack .../013-libio-string-perl_1.08-4_all.deb ... 268s Unpacking libio-string-perl (1.08-4) ... 268s Selecting previously unselected package libdata-stag-perl. 268s Preparing to unpack .../014-libdata-stag-perl_0.14-3_all.deb ... 268s Unpacking libdata-stag-perl (0.14-3) ... 268s Selecting previously unselected package libbio-perl-perl. 268s Preparing to unpack .../015-libbio-perl-perl_1.7.8-1_all.deb ... 268s Unpacking libbio-perl-perl (1.7.8-1) ... 268s Selecting previously unselected package libclass-data-inheritable-perl. 268s Preparing to unpack .../016-libclass-data-inheritable-perl_0.08-3_all.deb ... 268s Unpacking libclass-data-inheritable-perl (0.08-3) ... 268s Selecting previously unselected package libdevel-stacktrace-perl. 268s Preparing to unpack .../017-libdevel-stacktrace-perl_2.0500-1_all.deb ... 268s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 268s Selecting previously unselected package libexception-class-perl. 268s Preparing to unpack .../018-libexception-class-perl_1.45-1_all.deb ... 268s Unpacking libexception-class-perl (1.45-1) ... 268s Selecting previously unselected package libtest-deep-perl. 268s Preparing to unpack .../019-libtest-deep-perl_1.204-1_all.deb ... 268s Unpacking libtest-deep-perl (1.204-1) ... 268s Selecting previously unselected package libcapture-tiny-perl. 268s Preparing to unpack .../020-libcapture-tiny-perl_0.48-2_all.deb ... 268s Unpacking libcapture-tiny-perl (0.48-2) ... 268s Selecting previously unselected package libalgorithm-diff-perl. 268s Preparing to unpack .../021-libalgorithm-diff-perl_1.201-1_all.deb ... 268s Unpacking libalgorithm-diff-perl (1.201-1) ... 268s Selecting previously unselected package libtext-diff-perl. 268s Preparing to unpack .../022-libtext-diff-perl_1.45-2_all.deb ... 268s Unpacking libtext-diff-perl (1.45-2) ... 268s Selecting previously unselected package libtest-differences-perl. 268s Preparing to unpack .../023-libtest-differences-perl_0.71-1_all.deb ... 268s Unpacking libtest-differences-perl (0.71-1) ... 268s Selecting previously unselected package libsub-uplevel-perl. 268s Preparing to unpack .../024-libsub-uplevel-perl_0.2800-3_all.deb ... 268s Unpacking libsub-uplevel-perl (0.2800-3) ... 268s Selecting previously unselected package libtest-exception-perl. 268s Preparing to unpack .../025-libtest-exception-perl_0.43-3_all.deb ... 268s Unpacking libtest-exception-perl (0.43-3) ... 268s Selecting previously unselected package libtest-warn-perl. 268s Preparing to unpack .../026-libtest-warn-perl_0.37-2_all.deb ... 268s Unpacking libtest-warn-perl (0.37-2) ... 268s Selecting previously unselected package libtest-most-perl. 268s Preparing to unpack .../027-libtest-most-perl_0.38-1_all.deb ... 268s Unpacking libtest-most-perl (0.38-1) ... 268s Selecting previously unselected package bioperl. 268s Preparing to unpack .../028-bioperl_1.7.8-1_all.deb ... 268s Unpacking bioperl (1.7.8-1) ... 269s Selecting previously unselected package libtcl8.6:ppc64el. 269s Preparing to unpack .../029-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 269s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 269s Selecting previously unselected package libxrender1:ppc64el. 269s Preparing to unpack .../030-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 269s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 269s Selecting previously unselected package libxft2:ppc64el. 269s Preparing to unpack .../031-libxft2_2.3.6-1build1_ppc64el.deb ... 269s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 269s Selecting previously unselected package x11-common. 269s Preparing to unpack .../032-x11-common_1%3a7.7+23ubuntu3_all.deb ... 269s Unpacking x11-common (1:7.7+23ubuntu3) ... 269s Selecting previously unselected package libxss1:ppc64el. 269s Preparing to unpack .../033-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 269s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 269s Selecting previously unselected package libtk8.6:ppc64el. 269s Preparing to unpack .../034-libtk8.6_8.6.14-1build1_ppc64el.deb ... 269s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ... 269s Selecting previously unselected package tk8.6-blt2.5. 269s Preparing to unpack .../035-tk8.6-blt2.5_2.5.3+dfsg-7build1_ppc64el.deb ... 269s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 269s Selecting previously unselected package blt. 269s Preparing to unpack .../036-blt_2.5.3+dfsg-7build1_ppc64el.deb ... 269s Unpacking blt (2.5.3+dfsg-7build1) ... 269s Selecting previously unselected package libblas3:ppc64el. 269s Preparing to unpack .../037-libblas3_3.12.0-3build1_ppc64el.deb ... 269s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 269s Selecting previously unselected package libgfortran5:ppc64el. 269s Preparing to unpack .../038-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 269s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 269s Selecting previously unselected package liblapack3:ppc64el. 269s Preparing to unpack .../039-liblapack3_3.12.0-3build1_ppc64el.deb ... 269s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 269s Selecting previously unselected package python3-numpy. 269s Preparing to unpack .../040-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 269s Unpacking python3-numpy (1:1.26.4+ds-10) ... 269s Selecting previously unselected package python3-tk:ppc64el. 269s Preparing to unpack .../041-python3-tk_3.12.3-0ubuntu1_ppc64el.deb ... 269s Unpacking python3-tk:ppc64el (3.12.3-0ubuntu1) ... 269s Selecting previously unselected package python3-pil.imagetk:ppc64el. 269s Preparing to unpack .../042-python3-pil.imagetk_10.3.0-2_ppc64el.deb ... 269s Unpacking python3-pil.imagetk:ppc64el (10.3.0-2) ... 269s Selecting previously unselected package libgomp1:ppc64el. 269s Preparing to unpack .../043-libgomp1_14.1.0-1ubuntu1_ppc64el.deb ... 269s Unpacking libgomp1:ppc64el (14.1.0-1ubuntu1) ... 269s Selecting previously unselected package libimagequant0:ppc64el. 269s Preparing to unpack .../044-libimagequant0_2.18.0-1build1_ppc64el.deb ... 269s Unpacking libimagequant0:ppc64el (2.18.0-1build1) ... 269s Selecting previously unselected package liblcms2-2:ppc64el. 269s Preparing to unpack .../045-liblcms2-2_2.14-2build1_ppc64el.deb ... 269s Unpacking liblcms2-2:ppc64el (2.14-2build1) ... 269s Selecting previously unselected package libopenjp2-7:ppc64el. 269s Preparing to unpack .../046-libopenjp2-7_2.5.0-2build3_ppc64el.deb ... 269s Unpacking libopenjp2-7:ppc64el (2.5.0-2build3) ... 269s Selecting previously unselected package libgraphite2-3:ppc64el. 269s Preparing to unpack .../047-libgraphite2-3_1.3.14-2build1_ppc64el.deb ... 269s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ... 269s Selecting previously unselected package libharfbuzz0b:ppc64el. 269s Preparing to unpack .../048-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 269s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 270s Selecting previously unselected package libraqm0:ppc64el. 270s Preparing to unpack .../049-libraqm0_0.10.1-1build1_ppc64el.deb ... 270s Unpacking libraqm0:ppc64el (0.10.1-1build1) ... 270s Selecting previously unselected package libwebpdemux2:ppc64el. 270s Preparing to unpack .../050-libwebpdemux2_1.4.0-0.1_ppc64el.deb ... 270s Unpacking libwebpdemux2:ppc64el (1.4.0-0.1) ... 270s Selecting previously unselected package libwebpmux3:ppc64el. 270s Preparing to unpack .../051-libwebpmux3_1.4.0-0.1_ppc64el.deb ... 270s Unpacking libwebpmux3:ppc64el (1.4.0-0.1) ... 270s Selecting previously unselected package python3-pil:ppc64el. 270s Preparing to unpack .../052-python3-pil_10.3.0-2_ppc64el.deb ... 270s Unpacking python3-pil:ppc64el (10.3.0-2) ... 270s Selecting previously unselected package libpixman-1-0:ppc64el. 270s Preparing to unpack .../053-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 270s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 270s Selecting previously unselected package libxcb-render0:ppc64el. 270s Preparing to unpack .../054-libxcb-render0_1.17.0-2_ppc64el.deb ... 270s Unpacking libxcb-render0:ppc64el (1.17.0-2) ... 270s Selecting previously unselected package libxcb-shm0:ppc64el. 270s Preparing to unpack .../055-libxcb-shm0_1.17.0-2_ppc64el.deb ... 270s Unpacking libxcb-shm0:ppc64el (1.17.0-2) ... 270s Selecting previously unselected package libcairo2:ppc64el. 270s Preparing to unpack .../056-libcairo2_1.18.0-3build1_ppc64el.deb ... 270s Unpacking libcairo2:ppc64el (1.18.0-3build1) ... 270s Selecting previously unselected package python3-cairo. 270s Preparing to unpack .../057-python3-cairo_1.26.0-1_ppc64el.deb ... 270s Unpacking python3-cairo (1.26.0-1) ... 270s Selecting previously unselected package python3-freetype. 270s Preparing to unpack .../058-python3-freetype_2.4.0-2_all.deb ... 270s Unpacking python3-freetype (2.4.0-2) ... 270s Selecting previously unselected package python3-rlpycairo. 270s Preparing to unpack .../059-python3-rlpycairo_0.3.0-3_all.deb ... 270s Unpacking python3-rlpycairo (0.3.0-3) ... 270s Selecting previously unselected package libfontenc1:ppc64el. 270s Preparing to unpack .../060-libfontenc1_1%3a1.1.8-1build1_ppc64el.deb ... 270s Unpacking libfontenc1:ppc64el (1:1.1.8-1build1) ... 270s Selecting previously unselected package xfonts-encodings. 270s Preparing to unpack .../061-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 270s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 270s Selecting previously unselected package xfonts-utils. 270s Preparing to unpack .../062-xfonts-utils_1%3a7.7+6build3_ppc64el.deb ... 270s Unpacking xfonts-utils (1:7.7+6build3) ... 270s Selecting previously unselected package fonts-urw-base35. 270s Preparing to unpack .../063-fonts-urw-base35_20200910-8_all.deb ... 270s Unpacking fonts-urw-base35 (20200910-8) ... 270s Selecting previously unselected package python3-reportlab. 270s Preparing to unpack .../064-python3-reportlab_4.2.0-2_all.deb ... 270s Unpacking python3-reportlab (4.2.0-2) ... 270s Selecting previously unselected package xml-core. 270s Preparing to unpack .../065-xml-core_0.19_all.deb ... 270s Unpacking xml-core (0.19) ... 270s Selecting previously unselected package w3c-sgml-lib. 270s Preparing to unpack .../066-w3c-sgml-lib_1.3-3_all.deb ... 270s Unpacking w3c-sgml-lib (1.3-3) ... 270s Selecting previously unselected package python3-biopython. 270s Preparing to unpack .../067-python3-biopython_1.83+dfsg1-3_ppc64el.deb ... 270s Unpacking python3-biopython (1.83+dfsg1-3) ... 271s Selecting previously unselected package libjs-jquery. 271s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 271s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 271s Selecting previously unselected package libjs-jquery-ui. 271s Preparing to unpack .../069-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 271s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 271s Selecting previously unselected package fonts-lyx. 271s Preparing to unpack .../070-fonts-lyx_2.4.0-1_all.deb ... 271s Unpacking fonts-lyx (2.4.0-1) ... 271s Selecting previously unselected package python-matplotlib-data. 271s Preparing to unpack .../071-python-matplotlib-data_3.6.3-2ubuntu1_all.deb ... 271s Unpacking python-matplotlib-data (3.6.3-2ubuntu1) ... 271s Selecting previously unselected package python3-dateutil. 271s Preparing to unpack .../072-python3-dateutil_2.9.0-2_all.deb ... 271s Unpacking python3-dateutil (2.9.0-2) ... 271s Selecting previously unselected package python3-contourpy. 271s Preparing to unpack .../073-python3-contourpy_1.0.7-3_ppc64el.deb ... 271s Unpacking python3-contourpy (1.0.7-3) ... 271s Selecting previously unselected package python3-cycler. 271s Preparing to unpack .../074-python3-cycler_0.12.1-1_all.deb ... 271s Unpacking python3-cycler (0.12.1-1) ... 271s Selecting previously unselected package python3-brotli. 271s Preparing to unpack .../075-python3-brotli_1.1.0-2build2_ppc64el.deb ... 271s Unpacking python3-brotli (1.1.0-2build2) ... 271s Selecting previously unselected package python3-decorator. 271s Preparing to unpack .../076-python3-decorator_5.1.1-5_all.deb ... 271s Unpacking python3-decorator (5.1.1-5) ... 271s Selecting previously unselected package liblbfgsb0:ppc64el. 271s Preparing to unpack .../077-liblbfgsb0_3.0+dfsg.4-1build1_ppc64el.deb ... 271s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 271s Selecting previously unselected package python3-scipy. 271s Preparing to unpack .../078-python3-scipy_1.12.0-2_ppc64el.deb ... 271s Unpacking python3-scipy (1.12.0-2) ... 272s Selecting previously unselected package python3-ufolib2. 272s Preparing to unpack .../079-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 272s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 272s Selecting previously unselected package python3-mpmath. 272s Preparing to unpack .../080-python3-mpmath_1.3.0-1_all.deb ... 272s Unpacking python3-mpmath (1.3.0-1) ... 273s Selecting previously unselected package python3-sympy. 273s Preparing to unpack .../081-python3-sympy_1.12-8_all.deb ... 273s Unpacking python3-sympy (1.12-8) ... 273s Selecting previously unselected package python3-tz. 273s Preparing to unpack .../082-python3-tz_2024.1-2_all.deb ... 273s Unpacking python3-tz (2024.1-2) ... 273s Selecting previously unselected package python3-appdirs. 273s Preparing to unpack .../083-python3-appdirs_1.4.4-4_all.deb ... 273s Unpacking python3-appdirs (1.4.4-4) ... 273s Selecting previously unselected package python3-fs. 273s Preparing to unpack .../084-python3-fs_2.4.16-4_all.deb ... 273s Unpacking python3-fs (2.4.16-4) ... 273s Selecting previously unselected package libxslt1.1:ppc64el. 273s Preparing to unpack .../085-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 273s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 273s Selecting previously unselected package python3-lxml:ppc64el. 273s Preparing to unpack .../086-python3-lxml_5.2.1-1_ppc64el.deb ... 273s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 273s Selecting previously unselected package python3-lz4. 273s Preparing to unpack .../087-python3-lz4_4.0.2+dfsg-1build4_ppc64el.deb ... 273s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ... 273s Selecting previously unselected package python3-unicodedata2. 273s Preparing to unpack .../088-python3-unicodedata2_15.1.0+ds-1build1_ppc64el.deb ... 273s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ... 273s Selecting previously unselected package unicode-data. 273s Preparing to unpack .../089-unicode-data_15.1.0-1_all.deb ... 273s Unpacking unicode-data (15.1.0-1) ... 274s Selecting previously unselected package python3-fonttools. 274s Preparing to unpack .../090-python3-fonttools_4.46.0-1build2_ppc64el.deb ... 274s Unpacking python3-fonttools (4.46.0-1build2) ... 274s Selecting previously unselected package python3-kiwisolver. 274s Preparing to unpack .../091-python3-kiwisolver_1.4.5-1_ppc64el.deb ... 274s Unpacking python3-kiwisolver (1.4.5-1) ... 274s Selecting previously unselected package python3-packaging. 274s Preparing to unpack .../092-python3-packaging_24.0-1_all.deb ... 274s Unpacking python3-packaging (24.0-1) ... 274s Selecting previously unselected package libqhull-r8.0:ppc64el. 274s Preparing to unpack .../093-libqhull-r8.0_2020.2-6build1_ppc64el.deb ... 274s Unpacking libqhull-r8.0:ppc64el (2020.2-6build1) ... 274s Selecting previously unselected package python3-matplotlib. 274s Preparing to unpack .../094-python3-matplotlib_3.6.3-2ubuntu1_ppc64el.deb ... 274s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ... 274s Selecting previously unselected package python3-pandas-lib:ppc64el. 274s Preparing to unpack .../095-python3-pandas-lib_2.1.4+dfsg-8_ppc64el.deb ... 274s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 274s Selecting previously unselected package python3-pandas. 274s Preparing to unpack .../096-python3-pandas_2.1.4+dfsg-8_all.deb ... 274s Unpacking python3-pandas (2.1.4+dfsg-8) ... 275s Selecting previously unselected package python3-joblib. 275s Preparing to unpack .../097-python3-joblib_1.3.2-2_all.deb ... 275s Unpacking python3-joblib (1.3.2-2) ... 275s Selecting previously unselected package python3-networkx. 275s Preparing to unpack .../098-python3-networkx_3.2.1-4ubuntu1_all.deb ... 275s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 276s Selecting previously unselected package python3-pomegranate. 276s Preparing to unpack .../099-python3-pomegranate_0.14.8-6_ppc64el.deb ... 276s Unpacking python3-pomegranate (0.14.8-6) ... 276s Selecting previously unselected package python3-zipp. 276s Preparing to unpack .../100-python3-zipp_3.19.2-2_all.deb ... 276s Unpacking python3-zipp (3.19.2-2) ... 276s Selecting previously unselected package python3-importlib-metadata. 276s Preparing to unpack .../101-python3-importlib-metadata_7.1.0-1_all.deb ... 276s Unpacking python3-importlib-metadata (7.1.0-1) ... 276s Selecting previously unselected package python3-pyfaidx. 276s Preparing to unpack .../102-python3-pyfaidx_0.8.1.1-2_all.deb ... 276s Unpacking python3-pyfaidx (0.8.1.1-2) ... 276s Selecting previously unselected package libhtscodecs2:ppc64el. 276s Preparing to unpack .../103-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 276s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 276s Selecting previously unselected package libhts3t64:ppc64el. 276s Preparing to unpack .../104-libhts3t64_1.20+ds-1_ppc64el.deb ... 276s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 276s Selecting previously unselected package python3-pysam. 276s Preparing to unpack .../105-python3-pysam_0.22.1+ds-2_ppc64el.deb ... 276s Unpacking python3-pysam (0.22.1+ds-2) ... 277s Selecting previously unselected package python3-threadpoolctl. 277s Preparing to unpack .../106-python3-threadpoolctl_3.1.0-1_all.deb ... 277s Unpacking python3-threadpoolctl (3.1.0-1) ... 277s Selecting previously unselected package python3-sklearn-lib:ppc64el. 277s Preparing to unpack .../107-python3-sklearn-lib_1.4.2+dfsg-1_ppc64el.deb ... 277s Unpacking python3-sklearn-lib:ppc64el (1.4.2+dfsg-1) ... 277s Selecting previously unselected package python3-sklearn. 277s Preparing to unpack .../108-python3-sklearn_1.4.2+dfsg-1_all.deb ... 277s Unpacking python3-sklearn (1.4.2+dfsg-1) ... 277s Selecting previously unselected package zip. 277s Preparing to unpack .../109-zip_3.0-13build1_ppc64el.deb ... 277s Unpacking zip (3.0-13build1) ... 277s Selecting previously unselected package unzip. 277s Preparing to unpack .../110-unzip_6.0-28ubuntu5_ppc64el.deb ... 277s Unpacking unzip (6.0-28ubuntu5) ... 277s Selecting previously unselected package libpaper1:ppc64el. 277s Preparing to unpack .../111-libpaper1_1.1.29build1_ppc64el.deb ... 277s Unpacking libpaper1:ppc64el (1.1.29build1) ... 277s Selecting previously unselected package libpaper-utils. 277s Preparing to unpack .../112-libpaper-utils_1.1.29build1_ppc64el.deb ... 277s Unpacking libpaper-utils (1.1.29build1) ... 277s Selecting previously unselected package xdg-utils. 277s Preparing to unpack .../113-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 277s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 277s Selecting previously unselected package fontconfig. 277s Preparing to unpack .../114-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 277s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 277s Selecting previously unselected package libthai-data. 277s Preparing to unpack .../115-libthai-data_0.1.29-2build1_all.deb ... 277s Unpacking libthai-data (0.1.29-2build1) ... 277s Selecting previously unselected package libdatrie1:ppc64el. 277s Preparing to unpack .../116-libdatrie1_0.2.13-3build1_ppc64el.deb ... 277s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 277s Selecting previously unselected package libthai0:ppc64el. 277s Preparing to unpack .../117-libthai0_0.1.29-2build1_ppc64el.deb ... 277s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 277s Selecting previously unselected package libpango-1.0-0:ppc64el. 277s Preparing to unpack .../118-libpango-1.0-0_1.54.0+ds-1_ppc64el.deb ... 277s Unpacking libpango-1.0-0:ppc64el (1.54.0+ds-1) ... 277s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 277s Preparing to unpack .../119-libpangoft2-1.0-0_1.54.0+ds-1_ppc64el.deb ... 277s Unpacking libpangoft2-1.0-0:ppc64el (1.54.0+ds-1) ... 277s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 277s Preparing to unpack .../120-libpangocairo-1.0-0_1.54.0+ds-1_ppc64el.deb ... 277s Unpacking libpangocairo-1.0-0:ppc64el (1.54.0+ds-1) ... 277s Selecting previously unselected package libice6:ppc64el. 277s Preparing to unpack .../121-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 277s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 277s Selecting previously unselected package libsm6:ppc64el. 277s Preparing to unpack .../122-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 277s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 277s Selecting previously unselected package libxt6t64:ppc64el. 277s Preparing to unpack .../123-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 277s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 277s Selecting previously unselected package r-base-core. 277s Preparing to unpack .../124-r-base-core_4.4.1-1_ppc64el.deb ... 277s Unpacking r-base-core (4.4.1-1) ... 278s Selecting previously unselected package r-bioc-biocgenerics. 278s Preparing to unpack .../125-r-bioc-biocgenerics_0.48.1-2_all.deb ... 278s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 278s Selecting previously unselected package r-bioc-dnacopy. 278s Preparing to unpack .../126-r-bioc-dnacopy_1.76.0-1_ppc64el.deb ... 278s Unpacking r-bioc-dnacopy (1.76.0-1) ... 278s Selecting previously unselected package cnvkit. 278s Preparing to unpack .../127-cnvkit_0.9.10-2_all.deb ... 278s Unpacking cnvkit (0.9.10-2) ... 279s Selecting previously unselected package python3-xopen. 279s Preparing to unpack .../128-python3-xopen_1.7.0-2_all.deb ... 279s Unpacking python3-xopen (1.7.0-2) ... 279s Selecting previously unselected package python3-dnaio. 279s Preparing to unpack .../129-python3-dnaio_1.2.0-2build1_ppc64el.deb ... 279s Unpacking python3-dnaio (1.2.0-2build1) ... 279s Selecting previously unselected package python3-cutadapt. 279s Preparing to unpack .../130-python3-cutadapt_4.7-2_ppc64el.deb ... 279s Unpacking python3-cutadapt (4.7-2) ... 279s Selecting previously unselected package cutadapt. 279s Preparing to unpack .../131-cutadapt_4.7-2_all.deb ... 279s Unpacking cutadapt (4.7-2) ... 279s Selecting previously unselected package diamond-aligner. 279s Preparing to unpack .../132-diamond-aligner_2.1.9-1_ppc64el.deb ... 279s Unpacking diamond-aligner (2.1.9-1) ... 279s Selecting previously unselected package emboss-data. 279s Preparing to unpack .../133-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ... 279s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ... 288s Selecting previously unselected package emboss-test. 288s Preparing to unpack .../134-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ... 288s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ... 289s Selecting previously unselected package fonts-font-awesome. 289s Preparing to unpack .../135-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 289s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 289s Selecting previously unselected package fonts-glyphicons-halflings. 289s Preparing to unpack .../136-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 289s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 289s Selecting previously unselected package fonts-mathjax. 289s Preparing to unpack .../137-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 289s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 289s Selecting previously unselected package libgd-perl. 289s Preparing to unpack .../138-libgd-perl_2.78-1build3_ppc64el.deb ... 289s Unpacking libgd-perl (2.78-1build3) ... 289s Selecting previously unselected package libdevel-symdump-perl. 289s Preparing to unpack .../139-libdevel-symdump-perl_2.18-5_all.deb ... 289s Unpacking libdevel-symdump-perl (2.18-5) ... 289s Selecting previously unselected package liburi-perl. 289s Preparing to unpack .../140-liburi-perl_5.28-1_all.deb ... 289s Unpacking liburi-perl (5.28-1) ... 289s Selecting previously unselected package libencode-locale-perl. 289s Preparing to unpack .../141-libencode-locale-perl_1.05-3_all.deb ... 289s Unpacking libencode-locale-perl (1.05-3) ... 289s Selecting previously unselected package libtimedate-perl. 289s Preparing to unpack .../142-libtimedate-perl_2.3300-2_all.deb ... 289s Unpacking libtimedate-perl (2.3300-2) ... 289s Selecting previously unselected package libhttp-date-perl. 289s Preparing to unpack .../143-libhttp-date-perl_6.06-1_all.deb ... 289s Unpacking libhttp-date-perl (6.06-1) ... 289s Selecting previously unselected package libfile-listing-perl. 289s Preparing to unpack .../144-libfile-listing-perl_6.16-1_all.deb ... 289s Unpacking libfile-listing-perl (6.16-1) ... 289s Selecting previously unselected package libhtml-tagset-perl. 289s Preparing to unpack .../145-libhtml-tagset-perl_3.24-1_all.deb ... 289s Unpacking libhtml-tagset-perl (3.24-1) ... 289s Selecting previously unselected package libhtml-parser-perl:ppc64el. 289s Preparing to unpack .../146-libhtml-parser-perl_3.82-1_ppc64el.deb ... 289s Unpacking libhtml-parser-perl:ppc64el (3.82-1) ... 289s Selecting previously unselected package libhtml-tree-perl. 289s Preparing to unpack .../147-libhtml-tree-perl_5.07-3_all.deb ... 289s Unpacking libhtml-tree-perl (5.07-3) ... 289s Selecting previously unselected package libclone-perl:ppc64el. 289s Preparing to unpack .../148-libclone-perl_0.46-1build3_ppc64el.deb ... 289s Unpacking libclone-perl:ppc64el (0.46-1build3) ... 289s Selecting previously unselected package libio-html-perl. 289s Preparing to unpack .../149-libio-html-perl_1.004-3_all.deb ... 289s Unpacking libio-html-perl (1.004-3) ... 289s Selecting previously unselected package liblwp-mediatypes-perl. 290s Preparing to unpack .../150-liblwp-mediatypes-perl_6.04-2_all.deb ... 290s Unpacking liblwp-mediatypes-perl (6.04-2) ... 290s Selecting previously unselected package libhttp-message-perl. 290s Preparing to unpack .../151-libhttp-message-perl_6.45-1ubuntu1_all.deb ... 290s Unpacking libhttp-message-perl (6.45-1ubuntu1) ... 290s Selecting previously unselected package libhttp-cookies-perl. 290s Preparing to unpack .../152-libhttp-cookies-perl_6.11-1_all.deb ... 290s Unpacking libhttp-cookies-perl (6.11-1) ... 290s Selecting previously unselected package libhttp-negotiate-perl. 290s Preparing to unpack .../153-libhttp-negotiate-perl_6.01-2_all.deb ... 290s Unpacking libhttp-negotiate-perl (6.01-2) ... 290s Selecting previously unselected package perl-openssl-defaults:ppc64el. 290s Preparing to unpack .../154-perl-openssl-defaults_7build3_ppc64el.deb ... 290s Unpacking perl-openssl-defaults:ppc64el (7build3) ... 290s Selecting previously unselected package libnet-ssleay-perl:ppc64el. 290s Preparing to unpack .../155-libnet-ssleay-perl_1.94-1build4_ppc64el.deb ... 290s Unpacking libnet-ssleay-perl:ppc64el (1.94-1build4) ... 290s Selecting previously unselected package libio-socket-ssl-perl. 290s Preparing to unpack .../156-libio-socket-ssl-perl_2.085-1_all.deb ... 290s Unpacking libio-socket-ssl-perl (2.085-1) ... 290s Selecting previously unselected package libnet-http-perl. 290s Preparing to unpack .../157-libnet-http-perl_6.23-1_all.deb ... 290s Unpacking libnet-http-perl (6.23-1) ... 290s Selecting previously unselected package liblwp-protocol-https-perl. 290s Preparing to unpack .../158-liblwp-protocol-https-perl_6.14-1_all.deb ... 290s Unpacking liblwp-protocol-https-perl (6.14-1) ... 290s Selecting previously unselected package libtry-tiny-perl. 290s Preparing to unpack .../159-libtry-tiny-perl_0.31-2_all.deb ... 290s Unpacking libtry-tiny-perl (0.31-2) ... 290s Selecting previously unselected package libwww-robotrules-perl. 290s Preparing to unpack .../160-libwww-robotrules-perl_6.02-1_all.deb ... 290s Unpacking libwww-robotrules-perl (6.02-1) ... 290s Selecting previously unselected package libwww-perl. 290s Preparing to unpack .../161-libwww-perl_6.77-1_all.deb ... 290s Unpacking libwww-perl (6.77-1) ... 290s Selecting previously unselected package libapache2-mod-perl2. 290s Preparing to unpack .../162-libapache2-mod-perl2_2.0.13-1build5_ppc64el.deb ... 290s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ... 290s Selecting previously unselected package libdbi-perl:ppc64el. 290s Preparing to unpack .../163-libdbi-perl_1.643-4build3_ppc64el.deb ... 290s Unpacking libdbi-perl:ppc64el (1.643-4build3) ... 290s Selecting previously unselected package libapache-dbi-perl. 290s Preparing to unpack .../164-libapache-dbi-perl_1.12-3_all.deb ... 290s Unpacking libapache-dbi-perl (1.12-3) ... 290s Selecting previously unselected package libbio-db-biofetch-perl. 290s Preparing to unpack .../165-libbio-db-biofetch-perl_1.7.3-4_all.deb ... 290s Unpacking libbio-db-biofetch-perl (1.7.3-4) ... 290s Selecting previously unselected package libcgi-pm-perl. 290s Preparing to unpack .../166-libcgi-pm-perl_4.65-1_all.deb ... 290s Unpacking libcgi-pm-perl (4.65-1) ... 290s Selecting previously unselected package libbio-db-gff-perl. 290s Preparing to unpack .../167-libbio-db-gff-perl_1.7.4-1_all.deb ... 290s Unpacking libbio-db-gff-perl (1.7.4-1) ... 290s Selecting previously unselected package libpq5:ppc64el. 290s Preparing to unpack .../168-libpq5_16.3-1_ppc64el.deb ... 290s Unpacking libpq5:ppc64el (16.3-1) ... 290s Selecting previously unselected package libdbd-pg-perl. 290s Preparing to unpack .../169-libdbd-pg-perl_3.18.0-1build3_ppc64el.deb ... 290s Unpacking libdbd-pg-perl (3.18.0-1build3) ... 290s Selecting previously unselected package libdbd-sqlite3-perl:ppc64el. 290s Preparing to unpack .../170-libdbd-sqlite3-perl_1.74-1build3_ppc64el.deb ... 290s Unpacking libdbd-sqlite3-perl:ppc64el (1.74-1build3) ... 290s Selecting previously unselected package libbio-db-seqfeature-perl. 290s Preparing to unpack .../171-libbio-db-seqfeature-perl_1.7.4-2_all.deb ... 290s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ... 290s Selecting previously unselected package libbio-graphics-perl. 290s Preparing to unpack .../172-libbio-graphics-perl_2.40-6_all.deb ... 290s Unpacking libbio-graphics-perl (2.40-6) ... 290s Selecting previously unselected package libbio-coordinate-perl. 290s Preparing to unpack .../173-libbio-coordinate-perl_1.7.1-4_all.deb ... 290s Unpacking libbio-coordinate-perl (1.7.1-4) ... 290s Selecting previously unselected package libcgi-session-perl. 290s Preparing to unpack .../174-libcgi-session-perl_4.48-4_all.deb ... 290s Unpacking libcgi-session-perl (4.48-4) ... 290s Selecting previously unselected package libjson-perl. 290s Preparing to unpack .../175-libjson-perl_4.10000-1_all.deb ... 290s Unpacking libjson-perl (4.10000-1) ... 290s Selecting previously unselected package libexporter-tiny-perl. 290s Preparing to unpack .../176-libexporter-tiny-perl_1.006002-1_all.deb ... 290s Unpacking libexporter-tiny-perl (1.006002-1) ... 290s Selecting previously unselected package liblist-moreutils-xs-perl. 290s Preparing to unpack .../177-liblist-moreutils-xs-perl_0.430-4_ppc64el.deb ... 290s Unpacking liblist-moreutils-xs-perl (0.430-4) ... 291s Selecting previously unselected package liblist-moreutils-perl. 291s Preparing to unpack .../178-liblist-moreutils-perl_0.430-2_all.deb ... 291s Unpacking liblist-moreutils-perl (0.430-2) ... 291s Selecting previously unselected package libstatistics-descriptive-perl. 291s Preparing to unpack .../179-libstatistics-descriptive-perl_3.0801-1_all.deb ... 291s Unpacking libstatistics-descriptive-perl (3.0801-1) ... 291s Selecting previously unselected package libhttp-daemon-perl. 291s Preparing to unpack .../180-libhttp-daemon-perl_6.16-1_all.deb ... 291s Unpacking libhttp-daemon-perl (6.16-1) ... 291s Selecting previously unselected package libterm-readkey-perl. 291s Preparing to unpack .../181-libterm-readkey-perl_2.38-2build4_ppc64el.deb ... 291s Unpacking libterm-readkey-perl (2.38-2build4) ... 291s Selecting previously unselected package sqlite3. 291s Preparing to unpack .../182-sqlite3_3.46.0-1_ppc64el.deb ... 291s Unpacking sqlite3 (3.46.0-1) ... 291s Selecting previously unselected package libjs-prototype. 291s Preparing to unpack .../183-libjs-prototype_1.7.3-1_all.deb ... 291s Unpacking libjs-prototype (1.7.3-1) ... 291s Selecting previously unselected package libjs-scriptaculous. 291s Preparing to unpack .../184-libjs-scriptaculous_1.9.0-3_all.deb ... 291s Unpacking libjs-scriptaculous (1.9.0-3) ... 291s Selecting previously unselected package libanyevent-perl. 291s Preparing to unpack .../185-libanyevent-perl_7.170-2build6_ppc64el.deb ... 291s Unpacking libanyevent-perl (7.170-2build6) ... 291s Selecting previously unselected package libanyevent-cachedns-perl. 291s Preparing to unpack .../186-libanyevent-cachedns-perl_0.08-3_all.deb ... 291s Unpacking libanyevent-cachedns-perl (0.08-3) ... 291s Selecting previously unselected package libcommon-sense-perl:ppc64el. 291s Preparing to unpack .../187-libcommon-sense-perl_3.75-3build3_ppc64el.deb ... 291s Unpacking libcommon-sense-perl:ppc64el (3.75-3build3) ... 291s Selecting previously unselected package libanyevent-http-perl. 291s Preparing to unpack .../188-libanyevent-http-perl_2.25-2_all.deb ... 291s Unpacking libanyevent-http-perl (2.25-2) ... 291s Selecting previously unselected package libstring-approx-perl. 291s Preparing to unpack .../189-libstring-approx-perl_3.28-2build4_ppc64el.deb ... 291s Unpacking libstring-approx-perl (3.28-2build4) ... 291s Selecting previously unselected package libxml-namespacesupport-perl. 291s Preparing to unpack .../190-libxml-namespacesupport-perl_1.12-2_all.deb ... 291s Unpacking libxml-namespacesupport-perl (1.12-2) ... 291s Selecting previously unselected package libxml-sax-base-perl. 291s Preparing to unpack .../191-libxml-sax-base-perl_1.09-3_all.deb ... 291s Unpacking libxml-sax-base-perl (1.09-3) ... 291s Selecting previously unselected package libxml-sax-perl. 291s Preparing to unpack .../192-libxml-sax-perl_1.02+dfsg-3_all.deb ... 291s Unpacking libxml-sax-perl (1.02+dfsg-3) ... 291s Selecting previously unselected package libxml-libxml-perl. 291s Preparing to unpack .../193-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_ppc64el.deb ... 291s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 291s Selecting previously unselected package libxml-simple-perl. 291s Preparing to unpack .../194-libxml-simple-perl_2.25-2_all.deb ... 291s Unpacking libxml-simple-perl (2.25-2) ... 291s Selecting previously unselected package libvm-ec2-perl. 291s Preparing to unpack .../195-libvm-ec2-perl_1.28-4_all.deb ... 291s Unpacking libvm-ec2-perl (1.28-4) ... 291s Selecting previously unselected package gbrowse. 291s Preparing to unpack .../196-gbrowse_2.56+dfsg-12build3_all.deb ... 291s Unpacking gbrowse (2.56+dfsg-12build3) ... 291s Selecting previously unselected package gcc-13-base:ppc64el. 292s Preparing to unpack .../197-gcc-13-base_13.2.0-23ubuntu4_ppc64el.deb ... 292s Unpacking gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 292s Selecting previously unselected package gff2aplot. 292s Preparing to unpack .../198-gff2aplot_2.0-15_ppc64el.deb ... 292s Unpacking gff2aplot (2.0-15) ... 292s Selecting previously unselected package gff2ps. 292s Preparing to unpack .../199-gff2ps_0.98l-6_all.deb ... 292s Unpacking gff2ps (0.98l-6) ... 292s Selecting previously unselected package libgclib3t64:ppc64el. 292s Preparing to unpack .../200-libgclib3t64_0.12.7+ds-5ubuntu3_ppc64el.deb ... 292s Unpacking libgclib3t64:ppc64el (0.12.7+ds-5ubuntu3) ... 292s Selecting previously unselected package gffread. 292s Preparing to unpack .../201-gffread_0.12.7-5_ppc64el.deb ... 292s Unpacking gffread (0.12.7-5) ... 292s Selecting previously unselected package htslib-test. 292s Preparing to unpack .../202-htslib-test_1.20+ds-1_all.deb ... 292s Unpacking htslib-test (1.20+ds-1) ... 292s Selecting previously unselected package javascript-common. 292s Preparing to unpack .../203-javascript-common_11+nmu1_all.deb ... 292s Unpacking javascript-common (11+nmu1) ... 292s Selecting previously unselected package libasan8:ppc64el. 292s Preparing to unpack .../204-libasan8_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libasan8:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libatomic1:ppc64el. 292s Preparing to unpack .../205-libatomic1_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libatomic1:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libitm1:ppc64el. 292s Preparing to unpack .../206-libitm1_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libitm1:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package liblsan0:ppc64el. 292s Preparing to unpack .../207-liblsan0_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking liblsan0:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libtsan2:ppc64el. 292s Preparing to unpack .../208-libtsan2_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libtsan2:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libubsan1:ppc64el. 292s Preparing to unpack .../209-libubsan1_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libubsan1:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libquadmath0:ppc64el. 292s Preparing to unpack .../210-libquadmath0_14.1.0-1ubuntu1_ppc64el.deb ... 292s Unpacking libquadmath0:ppc64el (14.1.0-1ubuntu1) ... 292s Selecting previously unselected package libgcc-13-dev:ppc64el. 292s Preparing to unpack .../211-libgcc-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 292s Unpacking libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 292s Selecting previously unselected package libstdc++-13-dev:ppc64el. 292s Preparing to unpack .../212-libstdc++-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 292s Unpacking libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 293s Selecting previously unselected package libboost1.83-dev:ppc64el. 293s Preparing to unpack .../213-libboost1.83-dev_1.83.0-3ubuntu1_ppc64el.deb ... 293s Unpacking libboost1.83-dev:ppc64el (1.83.0-3ubuntu1) ... 296s Selecting previously unselected package libboost-dev:ppc64el. 296s Preparing to unpack .../214-libboost-dev_1.83.0.1ubuntu2_ppc64el.deb ... 296s Unpacking libboost-dev:ppc64el (1.83.0.1ubuntu2) ... 296s Selecting previously unselected package libjs-bootstrap. 296s Preparing to unpack .../215-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 296s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 296s Selecting previously unselected package libjs-popper.js. 296s Preparing to unpack .../216-libjs-popper.js_1.16.1+ds-6_all.deb ... 296s Unpacking libjs-popper.js (1.16.1+ds-6) ... 296s Selecting previously unselected package libjs-bootstrap4. 296s Preparing to unpack .../217-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 296s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 296s Selecting previously unselected package libjs-d3. 296s Preparing to unpack .../218-libjs-d3_3.5.17-4_all.deb ... 296s Unpacking libjs-d3 (3.5.17-4) ... 296s Selecting previously unselected package libjs-es5-shim. 296s Preparing to unpack .../219-libjs-es5-shim_4.6.7-2_all.deb ... 296s Unpacking libjs-es5-shim (4.6.7-2) ... 296s Selecting previously unselected package libjs-highlight.js. 296s Preparing to unpack .../220-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 296s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 296s Selecting previously unselected package libjs-jquery-datatables. 296s Preparing to unpack .../221-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 296s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 296s Selecting previously unselected package libjs-sifter.js. 297s Preparing to unpack .../222-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 297s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 297s Selecting previously unselected package libjs-microplugin.js. 297s Preparing to unpack .../223-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 297s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 297s Selecting previously unselected package libjs-jquery-selectize.js. 297s Preparing to unpack .../224-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 297s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 297s Selecting previously unselected package libjs-json. 297s Preparing to unpack .../225-libjs-json_0~20221030+~1.0.8-1_all.deb ... 297s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 297s Selecting previously unselected package libjs-prettify. 297s Preparing to unpack .../226-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 297s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 297s Selecting previously unselected package liblua5.1-0:ppc64el. 297s Preparing to unpack .../227-liblua5.1-0_5.1.5-9build2_ppc64el.deb ... 297s Unpacking liblua5.1-0:ppc64el (5.1.5-9build2) ... 297s Selecting previously unselected package libmbedcrypto7t64:ppc64el. 297s Preparing to unpack .../228-libmbedcrypto7t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedcrypto7t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libmbedx509-1t64:ppc64el. 297s Preparing to unpack .../229-libmbedx509-1t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedx509-1t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libmbedtls14t64:ppc64el. 297s Preparing to unpack .../230-libmbedtls14t64_2.28.8-1_ppc64el.deb ... 297s Unpacking libmbedtls14t64:ppc64el (2.28.8-1) ... 297s Selecting previously unselected package libtre5:ppc64el. 297s Preparing to unpack .../231-libtre5_0.8.0-7_ppc64el.deb ... 297s Unpacking libtre5:ppc64el (0.8.0-7) ... 297s Selecting previously unselected package ncbi-data. 297s Preparing to unpack .../232-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... 297s Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... 297s Selecting previously unselected package ncbi-blast+. 297s Preparing to unpack .../233-ncbi-blast+_2.12.0+ds-4build2_ppc64el.deb ... 297s Unpacking ncbi-blast+ (2.12.0+ds-4build2) ... 298s Selecting previously unselected package node-bootstrap-sass. 298s Preparing to unpack .../234-node-bootstrap-sass_3.4.3-2_all.deb ... 298s Unpacking node-bootstrap-sass (3.4.3-2) ... 298s Selecting previously unselected package node-html5shiv. 298s Preparing to unpack .../235-node-html5shiv_3.7.3+dfsg-5_all.deb ... 298s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 298s Selecting previously unselected package node-normalize.css. 298s Preparing to unpack .../236-node-normalize.css_8.0.1-5_all.deb ... 298s Unpacking node-normalize.css (8.0.1-5) ... 298s Selecting previously unselected package bowtie2. 298s Preparing to unpack .../237-bowtie2_2.5.3-1_ppc64el.deb ... 298s Unpacking bowtie2 (2.5.3-1) ... 298s Selecting previously unselected package samtools. 298s Preparing to unpack .../238-samtools_1.20-3_ppc64el.deb ... 298s Unpacking samtools (1.20-3) ... 298s Selecting previously unselected package optimir. 298s Preparing to unpack .../239-optimir_1.2-1_all.deb ... 298s Unpacking optimir (1.2-1) ... 298s Selecting previously unselected package pandoc-data. 298s Preparing to unpack .../240-pandoc-data_3.1.3-2build2_all.deb ... 298s Unpacking pandoc-data (3.1.3-2build2) ... 298s Selecting previously unselected package pandoc. 298s Preparing to unpack .../241-pandoc_3.1.3+ds-3build1_ppc64el.deb ... 298s Unpacking pandoc (3.1.3+ds-3build1) ... 300s Selecting previously unselected package proteinortho. 300s Preparing to unpack .../242-proteinortho_6.3.1+dfsg-1_ppc64el.deb ... 300s Unpacking proteinortho (6.3.1+dfsg-1) ... 300s Selecting previously unselected package python3-argcomplete. 300s Preparing to unpack .../243-python3-argcomplete_3.4.0-1_all.deb ... 300s Unpacking python3-argcomplete (3.4.0-1) ... 300s Selecting previously unselected package python3-argh. 300s Preparing to unpack .../244-python3-argh_0.31.2-1_all.deb ... 300s Unpacking python3-argh (0.31.2-1) ... 300s Selecting previously unselected package python3-simplejson. 300s Preparing to unpack .../245-python3-simplejson_3.19.2-1build2_ppc64el.deb ... 300s Unpacking python3-simplejson (3.19.2-1build2) ... 300s Selecting previously unselected package python3-gffutils. 300s Preparing to unpack .../246-python3-gffutils_0.13-1_all.deb ... 300s Unpacking python3-gffutils (0.13-1) ... 300s Selecting previously unselected package python3-pybedtools. 300s Preparing to unpack .../247-python3-pybedtools_0.10.0-1_ppc64el.deb ... 300s Unpacking python3-pybedtools (0.10.0-1) ... 300s Selecting previously unselected package r-bioc-biobase. 300s Preparing to unpack .../248-r-bioc-biobase_2.62.0-1_ppc64el.deb ... 300s Unpacking r-bioc-biobase (2.62.0-1) ... 300s Selecting previously unselected package r-bioc-s4vectors. 300s Preparing to unpack .../249-r-bioc-s4vectors_0.40.2+dfsg-1_ppc64el.deb ... 300s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 300s Selecting previously unselected package r-bioc-iranges. 300s Preparing to unpack .../250-r-bioc-iranges_2.36.0-1_ppc64el.deb ... 300s Unpacking r-bioc-iranges (2.36.0-1) ... 301s Selecting previously unselected package r-cran-dbi. 301s Preparing to unpack .../251-r-cran-dbi_1.2.3-1_all.deb ... 301s Unpacking r-cran-dbi (1.2.3-1) ... 301s Selecting previously unselected package r-cran-bit. 301s Preparing to unpack .../252-r-cran-bit_4.0.5-1_ppc64el.deb ... 301s Unpacking r-cran-bit (4.0.5-1) ... 301s Selecting previously unselected package r-cran-bit64. 301s Preparing to unpack .../253-r-cran-bit64_4.0.5-1_ppc64el.deb ... 301s Unpacking r-cran-bit64 (4.0.5-1) ... 301s Selecting previously unselected package r-cran-rlang. 301s Preparing to unpack .../254-r-cran-rlang_1.1.4-1_ppc64el.deb ... 301s Unpacking r-cran-rlang (1.1.4-1) ... 301s Selecting previously unselected package r-cran-cli. 301s Preparing to unpack .../255-r-cran-cli_3.6.2-1_ppc64el.deb ... 301s Unpacking r-cran-cli (3.6.2-1) ... 301s Selecting previously unselected package r-cran-glue. 301s Preparing to unpack .../256-r-cran-glue_1.7.0-1_ppc64el.deb ... 301s Unpacking r-cran-glue (1.7.0-1) ... 301s Selecting previously unselected package r-cran-lifecycle. 301s Preparing to unpack .../257-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 301s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 301s Selecting previously unselected package r-cran-vctrs. 301s Preparing to unpack .../258-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 301s Unpacking r-cran-vctrs (0.6.5-1) ... 301s Selecting previously unselected package r-cran-blob. 301s Preparing to unpack .../259-r-cran-blob_1.2.4-1_all.deb ... 301s Unpacking r-cran-blob (1.2.4-1) ... 301s Selecting previously unselected package r-cran-fastmap. 301s Preparing to unpack .../260-r-cran-fastmap_1.1.1-1_ppc64el.deb ... 301s Unpacking r-cran-fastmap (1.1.1-1) ... 301s Selecting previously unselected package r-cran-cachem. 301s Preparing to unpack .../261-r-cran-cachem_1.0.8-1_ppc64el.deb ... 301s Unpacking r-cran-cachem (1.0.8-1) ... 301s Selecting previously unselected package r-cran-memoise. 301s Preparing to unpack .../262-r-cran-memoise_2.0.1-1_all.deb ... 301s Unpacking r-cran-memoise (2.0.1-1) ... 301s Selecting previously unselected package r-cran-pkgconfig. 301s Preparing to unpack .../263-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 301s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 301s Selecting previously unselected package r-cran-plogr. 301s Preparing to unpack .../264-r-cran-plogr_0.2.0-3build1_all.deb ... 301s Unpacking r-cran-plogr (0.2.0-3build1) ... 301s Selecting previously unselected package r-cran-cpp11. 301s Preparing to unpack .../265-r-cran-cpp11_0.4.7-1_all.deb ... 301s Unpacking r-cran-cpp11 (0.4.7-1) ... 301s Selecting previously unselected package r-cran-rsqlite. 301s Preparing to unpack .../266-r-cran-rsqlite_2.3.7-1_ppc64el.deb ... 301s Unpacking r-cran-rsqlite (2.3.7-1) ... 301s Selecting previously unselected package r-cran-curl. 301s Preparing to unpack .../267-r-cran-curl_5.2.1+dfsg-1_ppc64el.deb ... 301s Unpacking r-cran-curl (5.2.1+dfsg-1) ... 301s Selecting previously unselected package r-cran-jsonlite. 301s Preparing to unpack .../268-r-cran-jsonlite_1.8.8+dfsg-1_ppc64el.deb ... 301s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 301s Selecting previously unselected package r-cran-mime. 301s Preparing to unpack .../269-r-cran-mime_0.12-2_ppc64el.deb ... 301s Unpacking r-cran-mime (0.12-2) ... 302s Selecting previously unselected package r-cran-sys. 302s Preparing to unpack .../270-r-cran-sys_3.4.2-1_ppc64el.deb ... 302s Unpacking r-cran-sys (3.4.2-1) ... 302s Selecting previously unselected package r-cran-askpass. 302s Preparing to unpack .../271-r-cran-askpass_1.2.0-1_ppc64el.deb ... 302s Unpacking r-cran-askpass (1.2.0-1) ... 302s Selecting previously unselected package r-cran-openssl. 302s Preparing to unpack .../272-r-cran-openssl_2.1.1+dfsg-2build2_ppc64el.deb ... 302s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 302s Selecting previously unselected package r-cran-r6. 302s Preparing to unpack .../273-r-cran-r6_2.5.1-1_all.deb ... 302s Unpacking r-cran-r6 (2.5.1-1) ... 302s Selecting previously unselected package r-cran-httr. 302s Preparing to unpack .../274-r-cran-httr_1.4.7+dfsg-1_all.deb ... 302s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 302s Selecting previously unselected package r-cran-png. 302s Preparing to unpack .../275-r-cran-png_0.1-8-1build2_ppc64el.deb ... 302s Unpacking r-cran-png (0.1-8-1build2) ... 302s Selecting previously unselected package zlib1g-dev:ppc64el. 302s Preparing to unpack .../276-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ... 302s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 302s Selecting previously unselected package r-bioc-zlibbioc. 302s Preparing to unpack .../277-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 302s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 302s Selecting previously unselected package r-bioc-xvector. 302s Preparing to unpack .../278-r-bioc-xvector_0.42.0-1_ppc64el.deb ... 302s Unpacking r-bioc-xvector (0.42.0-1) ... 302s Selecting previously unselected package r-cran-bitops. 302s Preparing to unpack .../279-r-cran-bitops_1.0-7-1_ppc64el.deb ... 302s Unpacking r-cran-bitops (1.0-7-1) ... 302s Selecting previously unselected package r-cran-rcurl. 302s Preparing to unpack .../280-r-cran-rcurl_1.98-1.14+dfsg-1build2_ppc64el.deb ... 302s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 302s Selecting previously unselected package r-bioc-genomeinfodbdata. 302s Preparing to unpack .../281-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 302s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 302s Selecting previously unselected package r-bioc-genomeinfodb. 302s Preparing to unpack .../282-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 302s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 302s Selecting previously unselected package r-cran-crayon. 302s Preparing to unpack .../283-r-cran-crayon_1.5.2-1_all.deb ... 302s Unpacking r-cran-crayon (1.5.2-1) ... 302s Selecting previously unselected package r-bioc-biostrings. 302s Preparing to unpack .../284-r-bioc-biostrings_2.70.3+dfsg-1_ppc64el.deb ... 302s Unpacking r-bioc-biostrings (2.70.3+dfsg-1) ... 302s Selecting previously unselected package r-bioc-keggrest. 302s Preparing to unpack .../285-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 302s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 303s Selecting previously unselected package r-bioc-annotationdbi. 303s Preparing to unpack .../286-r-bioc-annotationdbi_1.64.1-1_all.deb ... 303s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 303s Selecting previously unselected package r-bioc-genomicranges. 303s Preparing to unpack .../287-r-bioc-genomicranges_1.54.1+dfsg-1_ppc64el.deb ... 303s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 303s Selecting previously unselected package r-cran-lazyeval. 303s Preparing to unpack .../288-r-cran-lazyeval_0.2.2-1build1_ppc64el.deb ... 303s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 303s Selecting previously unselected package r-bioc-annotationfilter. 303s Preparing to unpack .../289-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 303s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 303s Selecting previously unselected package r-cran-generics. 303s Preparing to unpack .../290-r-cran-generics_0.1.3-1_all.deb ... 303s Unpacking r-cran-generics (0.1.3-1) ... 303s Selecting previously unselected package r-cran-magrittr. 303s Preparing to unpack .../291-r-cran-magrittr_2.0.3-1_ppc64el.deb ... 303s Unpacking r-cran-magrittr (2.0.3-1) ... 303s Selecting previously unselected package r-cran-fansi. 303s Preparing to unpack .../292-r-cran-fansi_1.0.5-1_ppc64el.deb ... 303s Unpacking r-cran-fansi (1.0.5-1) ... 303s Selecting previously unselected package r-cran-utf8. 303s Preparing to unpack .../293-r-cran-utf8_1.2.4-1_ppc64el.deb ... 303s Unpacking r-cran-utf8 (1.2.4-1) ... 303s Selecting previously unselected package r-cran-pillar. 303s Preparing to unpack .../294-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 303s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 303s Selecting previously unselected package r-cran-tibble. 303s Preparing to unpack .../295-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ... 303s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 303s Selecting previously unselected package r-cran-withr. 303s Preparing to unpack .../296-r-cran-withr_2.5.0-1_all.deb ... 303s Unpacking r-cran-withr (2.5.0-1) ... 303s Selecting previously unselected package r-cran-tidyselect. 303s Preparing to unpack .../297-r-cran-tidyselect_1.2.1+dfsg-1_ppc64el.deb ... 303s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 303s Selecting previously unselected package r-cran-dplyr. 303s Preparing to unpack .../298-r-cran-dplyr_1.1.4-1_ppc64el.deb ... 303s Unpacking r-cran-dplyr (1.1.4-1) ... 304s Selecting previously unselected package r-cran-purrr. 304s Preparing to unpack .../299-r-cran-purrr_1.0.2-1_ppc64el.deb ... 304s Unpacking r-cran-purrr (1.0.2-1) ... 304s Selecting previously unselected package r-cran-stringi. 304s Preparing to unpack .../300-r-cran-stringi_1.8.3-1_ppc64el.deb ... 304s Unpacking r-cran-stringi (1.8.3-1) ... 304s Selecting previously unselected package r-cran-stringr. 304s Preparing to unpack .../301-r-cran-stringr_1.5.1-1_all.deb ... 304s Unpacking r-cran-stringr (1.5.1-1) ... 304s Selecting previously unselected package r-cran-tidyr. 304s Preparing to unpack .../302-r-cran-tidyr_1.3.1-1_ppc64el.deb ... 304s Unpacking r-cran-tidyr (1.3.1-1) ... 304s Selecting previously unselected package r-cran-dbplyr. 304s Preparing to unpack .../303-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 304s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 304s Selecting previously unselected package r-cran-filelock. 304s Preparing to unpack .../304-r-cran-filelock_1.0.3-1_ppc64el.deb ... 304s Unpacking r-cran-filelock (1.0.3-1) ... 304s Selecting previously unselected package r-bioc-biocfilecache. 304s Preparing to unpack .../305-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 304s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 304s Selecting previously unselected package r-bioc-biocio. 304s Preparing to unpack .../306-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 304s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 304s Selecting previously unselected package r-cran-formatr. 304s Preparing to unpack .../307-r-cran-formatr_1.14-2_all.deb ... 304s Unpacking r-cran-formatr (1.14-2) ... 304s Selecting previously unselected package r-cran-lambda.r. 304s Preparing to unpack .../308-r-cran-lambda.r_1.2.4-2build1_all.deb ... 304s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 304s Selecting previously unselected package r-cran-futile.options. 304s Preparing to unpack .../309-r-cran-futile.options_1.0.1-3build1_all.deb ... 304s Unpacking r-cran-futile.options (1.0.1-3build1) ... 304s Selecting previously unselected package r-cran-futile.logger. 304s Preparing to unpack .../310-r-cran-futile.logger_1.4.3-4build1_all.deb ... 304s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 304s Selecting previously unselected package r-cran-snow. 304s Preparing to unpack .../311-r-cran-snow_1%3a0.4.4-2_all.deb ... 304s Unpacking r-cran-snow (1:0.4.4-2) ... 304s Selecting previously unselected package r-cran-codetools. 304s Preparing to unpack .../312-r-cran-codetools_0.2-20-1_all.deb ... 304s Unpacking r-cran-codetools (0.2-20-1) ... 304s Selecting previously unselected package r-cran-bh. 304s Preparing to unpack .../313-r-cran-bh_1.84.0-1_all.deb ... 304s Unpacking r-cran-bh (1.84.0-1) ... 304s Selecting previously unselected package r-bioc-biocparallel. 304s Preparing to unpack .../314-r-bioc-biocparallel_1.36.0-1_ppc64el.deb ... 304s Unpacking r-bioc-biocparallel (1.36.0-1) ... 305s Selecting previously unselected package r-cran-xml. 305s Preparing to unpack .../315-r-cran-xml_3.99-0.16.1-1_ppc64el.deb ... 305s Unpacking r-cran-xml (3.99-0.16.1-1) ... 305s Selecting previously unselected package r-cran-hms. 305s Preparing to unpack .../316-r-cran-hms_1.1.3-1_all.deb ... 305s Unpacking r-cran-hms (1.1.3-1) ... 305s Selecting previously unselected package r-cran-prettyunits. 305s Preparing to unpack .../317-r-cran-prettyunits_1.2.0-1_all.deb ... 305s Unpacking r-cran-prettyunits (1.2.0-1) ... 305s Selecting previously unselected package r-cran-progress. 305s Preparing to unpack .../318-r-cran-progress_1.2.3-1_all.deb ... 305s Unpacking r-cran-progress (1.2.3-1) ... 305s Selecting previously unselected package r-cran-digest. 305s Preparing to unpack .../319-r-cran-digest_0.6.35-1_ppc64el.deb ... 305s Unpacking r-cran-digest (0.6.35-1) ... 305s Selecting previously unselected package r-cran-rappdirs. 305s Preparing to unpack .../320-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 305s Unpacking r-cran-rappdirs (0.3.3-1) ... 305s Selecting previously unselected package r-cran-xml2. 305s Preparing to unpack .../321-r-cran-xml2_1.3.6-1_ppc64el.deb ... 305s Unpacking r-cran-xml2 (1.3.6-1) ... 305s Selecting previously unselected package r-bioc-biomart. 305s Preparing to unpack .../322-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 305s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 305s Selecting previously unselected package r-cran-farver. 305s Preparing to unpack .../323-r-cran-farver_2.1.1-2_ppc64el.deb ... 305s Unpacking r-cran-farver (2.1.1-2) ... 305s Selecting previously unselected package r-cran-labeling. 305s Preparing to unpack .../324-r-cran-labeling_0.4.3-1_all.deb ... 305s Unpacking r-cran-labeling (0.4.3-1) ... 305s Selecting previously unselected package r-cran-colorspace. 305s Preparing to unpack .../325-r-cran-colorspace_2.1-0+dfsg-1_ppc64el.deb ... 305s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 305s Selecting previously unselected package r-cran-munsell. 305s Preparing to unpack .../326-r-cran-munsell_0.5.1-1_all.deb ... 305s Unpacking r-cran-munsell (0.5.1-1) ... 305s Selecting previously unselected package r-cran-rcolorbrewer. 305s Preparing to unpack .../327-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 305s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 305s Selecting previously unselected package r-cran-viridislite. 305s Preparing to unpack .../328-r-cran-viridislite_0.4.2-2_all.deb ... 305s Unpacking r-cran-viridislite (0.4.2-2) ... 305s Selecting previously unselected package r-cran-scales. 305s Preparing to unpack .../329-r-cran-scales_1.3.0-1_all.deb ... 305s Unpacking r-cran-scales (1.3.0-1) ... 305s Selecting previously unselected package r-cran-gtable. 305s Preparing to unpack .../330-r-cran-gtable_0.3.5+dfsg-1_all.deb ... 305s Unpacking r-cran-gtable (0.3.5+dfsg-1) ... 305s Selecting previously unselected package r-cran-isoband. 306s Preparing to unpack .../331-r-cran-isoband_0.2.7-1_ppc64el.deb ... 306s Unpacking r-cran-isoband (0.2.7-1) ... 306s Selecting previously unselected package r-cran-mass. 306s Preparing to unpack .../332-r-cran-mass_7.3-61-1_ppc64el.deb ... 306s Unpacking r-cran-mass (7.3-61-1) ... 306s Selecting previously unselected package r-cran-lattice. 306s Preparing to unpack .../333-r-cran-lattice_0.22-6-1_ppc64el.deb ... 306s Unpacking r-cran-lattice (0.22-6-1) ... 306s Selecting previously unselected package r-cran-nlme. 306s Preparing to unpack .../334-r-cran-nlme_3.1.165-1_ppc64el.deb ... 306s Unpacking r-cran-nlme (3.1.165-1) ... 306s Selecting previously unselected package r-cran-matrix. 306s Preparing to unpack .../335-r-cran-matrix_1.7-0-3_ppc64el.deb ... 306s Unpacking r-cran-matrix (1.7-0-3) ... 306s Selecting previously unselected package r-cran-mgcv. 306s Preparing to unpack .../336-r-cran-mgcv_1.9-1-1_ppc64el.deb ... 306s Unpacking r-cran-mgcv (1.9-1-1) ... 306s Selecting previously unselected package r-cran-ggplot2. 306s Preparing to unpack .../337-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 306s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 306s Selecting previously unselected package r-cran-cluster. 306s Preparing to unpack .../338-r-cran-cluster_2.1.6-1build1_ppc64el.deb ... 306s Unpacking r-cran-cluster (2.1.6-1build1) ... 306s Selecting previously unselected package r-cran-survival. 306s Preparing to unpack .../339-r-cran-survival_3.7-0-1_ppc64el.deb ... 306s Unpacking r-cran-survival (3.7-0-1) ... 306s Selecting previously unselected package r-cran-rpart. 306s Preparing to unpack .../340-r-cran-rpart_4.1.23-1build1_ppc64el.deb ... 306s Unpacking r-cran-rpart (4.1.23-1build1) ... 307s Selecting previously unselected package r-cran-nnet. 307s Preparing to unpack .../341-r-cran-nnet_7.3-19-2build1_ppc64el.deb ... 307s Unpacking r-cran-nnet (7.3-19-2build1) ... 307s Selecting previously unselected package r-cran-foreign. 307s Preparing to unpack .../342-r-cran-foreign_0.8.86-1build1_ppc64el.deb ... 307s Unpacking r-cran-foreign (0.8.86-1build1) ... 307s Selecting previously unselected package r-cran-gridextra. 307s Preparing to unpack .../343-r-cran-gridextra_2.3-3build1_all.deb ... 307s Unpacking r-cran-gridextra (2.3-3build1) ... 307s Selecting previously unselected package r-cran-data.table. 307s Preparing to unpack .../344-r-cran-data.table_1.15.4+dfsg-2.2_ppc64el.deb ... 307s Unpacking r-cran-data.table (1.15.4+dfsg-2.2) ... 307s Selecting previously unselected package r-cran-evaluate. 307s Preparing to unpack .../345-r-cran-evaluate_0.23-1_all.deb ... 307s Unpacking r-cran-evaluate (0.23-1) ... 307s Selecting previously unselected package r-cran-xfun. 307s Preparing to unpack .../346-r-cran-xfun_0.44+dfsg-1_ppc64el.deb ... 307s Unpacking r-cran-xfun (0.44+dfsg-1) ... 307s Selecting previously unselected package r-cran-highr. 307s Preparing to unpack .../347-r-cran-highr_0.11+dfsg-1_all.deb ... 307s Unpacking r-cran-highr (0.11+dfsg-1) ... 307s Selecting previously unselected package r-cran-yaml. 307s Preparing to unpack .../348-r-cran-yaml_2.3.8-2_ppc64el.deb ... 307s Unpacking r-cran-yaml (2.3.8-2) ... 307s Selecting previously unselected package libjs-mathjax. 307s Preparing to unpack .../349-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 307s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 309s Selecting previously unselected package r-cran-knitr. 309s Preparing to unpack .../350-r-cran-knitr_1.46+dfsg-1_all.deb ... 309s Unpacking r-cran-knitr (1.46+dfsg-1) ... 309s Selecting previously unselected package r-cran-backports. 309s Preparing to unpack .../351-r-cran-backports_1.4.1-1_ppc64el.deb ... 309s Unpacking r-cran-backports (1.4.1-1) ... 309s Selecting previously unselected package r-cran-checkmate. 309s Preparing to unpack .../352-r-cran-checkmate_2.3.1-1_ppc64el.deb ... 309s Unpacking r-cran-checkmate (2.3.1-1) ... 309s Selecting previously unselected package r-cran-base64enc. 309s Preparing to unpack .../353-r-cran-base64enc_0.1-3-3_ppc64el.deb ... 309s Unpacking r-cran-base64enc (0.1-3-3) ... 309s Selecting previously unselected package r-cran-htmltools. 309s Preparing to unpack .../354-r-cran-htmltools_0.5.8.1-1_ppc64el.deb ... 309s Unpacking r-cran-htmltools (0.5.8.1-1) ... 309s Selecting previously unselected package r-cran-jquerylib. 309s Preparing to unpack .../355-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 309s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 309s Selecting previously unselected package r-cran-fs. 309s Preparing to unpack .../356-r-cran-fs_1.6.3+dfsg-1build2_ppc64el.deb ... 309s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 309s Selecting previously unselected package r-cran-sass. 309s Preparing to unpack .../357-r-cran-sass_0.4.9+dfsg-1_ppc64el.deb ... 309s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 309s Selecting previously unselected package r-cran-bslib. 309s Preparing to unpack .../358-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 309s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 309s Selecting previously unselected package r-cran-fontawesome. 309s Preparing to unpack .../359-r-cran-fontawesome_0.5.2-1_all.deb ... 309s Unpacking r-cran-fontawesome (0.5.2-1) ... 309s Selecting previously unselected package r-cran-tinytex. 309s Preparing to unpack .../360-r-cran-tinytex_0.51-1_all.deb ... 309s Unpacking r-cran-tinytex (0.51-1) ... 309s Selecting previously unselected package libjs-modernizr. 309s Preparing to unpack .../361-libjs-modernizr_3.13.0-0.1_all.deb ... 309s Unpacking libjs-modernizr (3.13.0-0.1) ... 309s Selecting previously unselected package r-cran-littler. 309s Preparing to unpack .../362-r-cran-littler_0.3.20-1_ppc64el.deb ... 309s Unpacking r-cran-littler (0.3.20-1) ... 309s Selecting previously unselected package r-cran-pkgkitten. 309s Preparing to unpack .../363-r-cran-pkgkitten_0.2.3-1_all.deb ... 309s Unpacking r-cran-pkgkitten (0.2.3-1) ... 309s Selecting previously unselected package r-cran-rcpp. 309s Preparing to unpack .../364-r-cran-rcpp_1.0.12-1_ppc64el.deb ... 309s Unpacking r-cran-rcpp (1.0.12-1) ... 310s Selecting previously unselected package r-cran-later. 310s Preparing to unpack .../365-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ... 310s Unpacking r-cran-later (1.3.2+dfsg-1) ... 310s Selecting previously unselected package r-cran-promises. 310s Preparing to unpack .../366-r-cran-promises_1.3.0+dfsg-1_ppc64el.deb ... 310s Unpacking r-cran-promises (1.3.0+dfsg-1) ... 310s Selecting previously unselected package r-cran-httpuv. 310s Preparing to unpack .../367-r-cran-httpuv_1.6.15+dfsg-1_ppc64el.deb ... 310s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 310s Selecting previously unselected package r-cran-xtable. 310s Preparing to unpack .../368-r-cran-xtable_1%3a1.8-4-2_all.deb ... 310s Unpacking r-cran-xtable (1:1.8-4-2) ... 310s Selecting previously unselected package r-cran-sourcetools. 310s Preparing to unpack .../369-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ... 310s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 310s Selecting previously unselected package r-cran-commonmark. 310s Preparing to unpack .../370-r-cran-commonmark_1.9.1-1_ppc64el.deb ... 310s Unpacking r-cran-commonmark (1.9.1-1) ... 310s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 310s Preparing to unpack .../371-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 310s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 310s Selecting previously unselected package r-cran-shiny. 310s Preparing to unpack .../372-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ... 310s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ... 310s Selecting previously unselected package r-cran-rmarkdown. 310s Preparing to unpack .../373-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 310s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 310s Selecting previously unselected package r-cran-htmlwidgets. 310s Preparing to unpack .../374-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 310s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 310s Selecting previously unselected package r-cran-rstudioapi. 310s Preparing to unpack .../375-r-cran-rstudioapi_0.16.0-1_all.deb ... 310s Unpacking r-cran-rstudioapi (0.16.0-1) ... 310s Selecting previously unselected package r-cran-htmltable. 310s Preparing to unpack .../376-r-cran-htmltable_2.4.2-1_all.deb ... 310s Unpacking r-cran-htmltable (2.4.2-1) ... 310s Selecting previously unselected package r-cran-viridis. 310s Preparing to unpack .../377-r-cran-viridis_0.6.5-1_all.deb ... 310s Unpacking r-cran-viridis (0.6.5-1) ... 310s Selecting previously unselected package r-cran-formula. 310s Preparing to unpack .../378-r-cran-formula_1.2-5-1_all.deb ... 310s Unpacking r-cran-formula (1.2-5-1) ... 310s Selecting previously unselected package r-cran-chron. 310s Preparing to unpack .../379-r-cran-chron_2.3-61-2_ppc64el.deb ... 310s Unpacking r-cran-chron (2.3-61-2) ... 310s Selecting previously unselected package r-cran-jpeg. 310s Preparing to unpack .../380-r-cran-jpeg_0.1-10-1_ppc64el.deb ... 310s Unpacking r-cran-jpeg (0.1-10-1) ... 310s Selecting previously unselected package r-cran-deldir. 310s Preparing to unpack .../381-r-cran-deldir_2.0-4-1build1_ppc64el.deb ... 310s Unpacking r-cran-deldir (2.0-4-1build1) ... 310s Selecting previously unselected package r-cran-rcppeigen. 310s Preparing to unpack .../382-r-cran-rcppeigen_0.3.4.0.0-1build1_ppc64el.deb ... 310s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 310s Selecting previously unselected package r-cran-interp. 311s Preparing to unpack .../383-r-cran-interp_1.1-6-1_ppc64el.deb ... 311s Unpacking r-cran-interp (1.1-6-1) ... 311s Selecting previously unselected package r-cran-latticeextra. 311s Preparing to unpack .../384-r-cran-latticeextra_0.6-30-1_all.deb ... 311s Unpacking r-cran-latticeextra (0.6-30-1) ... 311s Selecting previously unselected package r-cran-acepack. 311s Preparing to unpack .../385-r-cran-acepack_1.4.2-1_ppc64el.deb ... 311s Unpacking r-cran-acepack (1.4.2-1) ... 311s Selecting previously unselected package r-cran-hmisc. 311s Preparing to unpack .../386-r-cran-hmisc_5.1-3-1_ppc64el.deb ... 311s Unpacking r-cran-hmisc (5.1-3-1) ... 311s Selecting previously unselected package r-cran-dichromat. 311s Preparing to unpack .../387-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 311s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 311s Selecting previously unselected package r-cran-matrixstats. 311s Preparing to unpack .../388-r-cran-matrixstats_1.3.0-1_ppc64el.deb ... 311s Unpacking r-cran-matrixstats (1.3.0-1) ... 311s Selecting previously unselected package r-bioc-matrixgenerics. 311s Preparing to unpack .../389-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 311s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 311s Selecting previously unselected package r-cran-abind. 311s Preparing to unpack .../390-r-cran-abind_1.4-5-2_all.deb ... 311s Unpacking r-cran-abind (1.4-5-2) ... 311s Selecting previously unselected package r-bioc-s4arrays. 311s Preparing to unpack .../391-r-bioc-s4arrays_1.2.0+dfsg-1_ppc64el.deb ... 311s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 311s Selecting previously unselected package r-bioc-sparsearray. 311s Preparing to unpack .../392-r-bioc-sparsearray_1.2.4+dfsg-1_ppc64el.deb ... 311s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 311s Selecting previously unselected package r-bioc-delayedarray. 311s Preparing to unpack .../393-r-bioc-delayedarray_0.28.0+dfsg-1_ppc64el.deb ... 311s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 311s Selecting previously unselected package r-bioc-summarizedexperiment. 311s Preparing to unpack .../394-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 311s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 311s Selecting previously unselected package r-bioc-rhtslib. 311s Preparing to unpack .../395-r-bioc-rhtslib_2.4.1+dfsg-3build2_ppc64el.deb ... 311s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 311s Selecting previously unselected package r-bioc-rsamtools. 311s Preparing to unpack .../396-r-bioc-rsamtools_2.18.0+dfsg-1build2_ppc64el.deb ... 311s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 311s Selecting previously unselected package r-bioc-genomicalignments. 311s Preparing to unpack .../397-r-bioc-genomicalignments_1.38.2-1_ppc64el.deb ... 311s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 311s Selecting previously unselected package r-cran-rjson. 311s Preparing to unpack .../398-r-cran-rjson_0.2.21-1_ppc64el.deb ... 311s Unpacking r-cran-rjson (0.2.21-1) ... 311s Selecting previously unselected package r-cran-restfulr. 311s Preparing to unpack .../399-r-cran-restfulr_0.0.15-1_ppc64el.deb ... 311s Unpacking r-cran-restfulr (0.0.15-1) ... 311s Selecting previously unselected package r-bioc-rtracklayer. 311s Preparing to unpack .../400-r-bioc-rtracklayer_1.62.0-1_ppc64el.deb ... 311s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 312s Selecting previously unselected package r-bioc-genomicfeatures. 312s Preparing to unpack .../401-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 312s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 312s Selecting previously unselected package r-bioc-bsgenome. 312s Preparing to unpack .../402-r-bioc-bsgenome_1.70.2-1_all.deb ... 312s Unpacking r-bioc-bsgenome (1.70.2-1) ... 312s Selecting previously unselected package r-bioc-variantannotation. 312s Preparing to unpack .../403-r-bioc-variantannotation_1.48.1-1build2_ppc64el.deb ... 312s Unpacking r-bioc-variantannotation (1.48.1-1build2) ... 312s Selecting previously unselected package r-bioc-protgenerics. 312s Preparing to unpack .../404-r-bioc-protgenerics_1.34.0-1_all.deb ... 312s Unpacking r-bioc-protgenerics (1.34.0-1) ... 312s Selecting previously unselected package r-bioc-ensembldb. 312s Preparing to unpack .../405-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 312s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 312s Selecting previously unselected package r-bioc-biovizbase. 312s Preparing to unpack .../406-r-bioc-biovizbase_1.50.0-1_ppc64el.deb ... 312s Unpacking r-bioc-biovizbase (1.50.0-1) ... 312s Selecting previously unselected package r-bioc-gviz. 312s Preparing to unpack .../407-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 312s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 312s Selecting previously unselected package trinityrnaseq-examples. 312s Preparing to unpack .../408-trinityrnaseq-examples_2.15.1+dfsg-5build1_ppc64el.deb ... 312s Unpacking trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 316s Selecting previously unselected package genometools-common. 316s Preparing to unpack .../409-genometools-common_1.6.5+ds-2.2_all.deb ... 316s Unpacking genometools-common (1.6.5+ds-2.2) ... 316s Selecting previously unselected package seqan-apps. 316s Preparing to unpack .../410-seqan-apps_2.4.0+dfsg-16_ppc64el.deb ... 316s Unpacking seqan-apps (2.4.0+dfsg-16) ... 317s Selecting previously unselected package autopkgtest-satdep. 317s Preparing to unpack .../411-1-autopkgtest-satdep.deb ... 317s Unpacking autopkgtest-satdep (0) ... 317s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 317s Setting up libgclib3t64:ppc64el (0.12.7+ds-5ubuntu3) ... 317s Setting up libanyevent-perl (7.170-2build6) ... 317s Setting up libjs-json (0~20221030+~1.0.8-1) ... 317s Setting up javascript-common (11+nmu1) ... 317s Package apache2 is not configured yet. Will defer actions by package javascript-common. 317s Setting up libgraphite2-3:ppc64el (1.3.14-2build1) ... 317s Setting up liblcms2-2:ppc64el (2.14-2build1) ... 317s Setting up ncbi-data (6.1.20170106+dfsg2-2) ... 317s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ... 317s Setting up libstring-approx-perl (3.28-2build4) ... 317s Setting up python3-argh (0.31.2-1) ... 317s Setting up libpaper1:ppc64el (1.1.29build1) ... 317s 317s Creating config file /etc/papersize with new version 317s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 320s Regenerating fonts cache... done. 320s Setting up gff2ps (0.98l-6) ... 320s Setting up gffread (0.12.7-5) ... 320s Setting up libtre5:ppc64el (0.8.0-7) ... 320s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 320s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 320s Setting up libmbedcrypto7t64:ppc64el (2.28.8-1) ... 320s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 320s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 320s Setting up libtest-deep-perl (1.204-1) ... 320s Setting up python3-joblib (1.3.2-2) ... 320s Setting up libjs-popper.js (1.16.1+ds-6) ... 320s Setting up python3-lz4 (4.0.2+dfsg-1build4) ... 321s Setting up libxcb-render0:ppc64el (1.17.0-2) ... 321s Setting up libclone-perl:ppc64el (0.46-1build3) ... 321s Setting up libalgorithm-diff-perl (1.201-1) ... 321s Setting up htslib-test (1.20+ds-1) ... 321s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 321s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 321s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ... 321s Setting up fonts-lyx (2.4.0-1) ... 321s Setting up libhtml-tagset-perl (3.24-1) ... 321s Setting up libwebpdemux2:ppc64el (1.4.0-0.1) ... 321s Setting up unzip (6.0-28ubuntu5) ... 321s Setting up liblwp-mediatypes-perl (6.04-2) ... 321s Setting up python3-threadpoolctl (3.1.0-1) ... 321s Setting up x11-common (1:7.7+23ubuntu3) ... 322s Setting up libtry-tiny-perl (0.31-2) ... 322s Setting up node-html5shiv (3.7.3+dfsg-5) 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325s Setting up bowtie2 (2.5.3-1) ... 325s Setting up augustus-doc (3.5.0+dfsg-4build5) ... 325s Setting up libjs-es5-shim (4.6.7-2) ... 325s Setting up unicode-data (15.1.0-1) ... 325s Setting up python3-simplejson (3.19.2-1build2) ... 325s Setting up libgd-perl (2.78-1build3) ... 325s Setting up libxml-sax-base-perl (1.09-3) ... 325s Setting up libio-string-perl (1.08-4) ... 325s Setting up python3-decorator (5.1.1-5) ... 325s Setting up zip (3.0-13build1) ... 325s Setting up libfontenc1:ppc64el (1:1.1.8-1build1) ... 325s Setting up libblas3:ppc64el (3.12.0-3build1) ... 325s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 325s Setting up libclass-data-inheritable-perl (0.08-3) ... 325s Setting up python3-packaging (24.0-1) ... 326s Setting up gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 326s Setting up libtext-diff-perl (1.45-2) ... 326s Setting up python3-brotli (1.1.0-2build2) ... 326s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 326s Setting up libquadmath0:ppc64el (14.1.0-1ubuntu1) ... 326s Setting up python3-cycler (0.12.1-1) ... 326s Setting up libanyevent-cachedns-perl (0.08-3) ... 326s Setting up libimagequant0:ppc64el (2.18.0-1build1) ... 326s Setting up seqan-apps (2.4.0+dfsg-16) ... 326s Setting up libjs-d3 (3.5.17-4) ... 326s Setting up python3-kiwisolver (1.4.5-1) ... 326s Setting up libatomic1:ppc64el (14.1.0-1ubuntu1) ... 326s Setting up libio-html-perl (1.004-3) ... 326s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 326s Setting up liblist-moreutils-xs-perl (0.430-4) ... 326s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ... 326s Setting up libjs-prototype (1.7.3-1) ... 326s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 326s Setting up libcapture-tiny-perl (0.48-2) ... 326s Setting up libtimedate-perl (2.3300-2) ... 326s Setting up libubsan1:ppc64el (14.1.0-1ubuntu1) ... 326s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 326s Setting up libdata-stag-perl (0.14-3) ... 326s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 326s Setting up pigz (2.8-1) ... 326s Setting up libasan8:ppc64el (14.1.0-1ubuntu1) ... 326s Setting up libapr1t64:ppc64el (1.7.2-3.2) ... 326s Setting up libjson-perl (4.10000-1) ... 326s Setting up liblua5.1-0:ppc64el (5.1.5-9build2) ... 326s Setting up libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 326s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 326s Setting up libsub-uplevel-perl (0.2800-3) ... 326s Setting up liblua5.4-0:ppc64el (5.4.6-3build2) ... 326s Setting up libopenjp2-7:ppc64el (2.5.0-2build3) ... 326s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ... 326s Setting up libthai-data (0.1.29-2build1) ... 326s Setting up python3-dateutil (2.9.0-2) ... 326s Setting up node-bootstrap-sass (3.4.3-2) ... 326s Setting up sgml-base (1.31) ... 326s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 326s Setting up libdevel-stacktrace-perl (2.0500-1) ... 326s Setting up apache2-data (2.4.59-2ubuntu2) ... 326s Setting up libdevel-symdump-perl (2.18-5) ... 326s Setting up libbio-perl-perl (1.7.8-1) ... 326s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 327s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 327s Setting up pandoc-data (3.1.3-2build2) ... 327s Setting up libtsan2:ppc64el (14.1.0-1ubuntu1) ... 327s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 327s Setting up bedtools-test (2.31.1+dfsg-2) ... 327s Setting up libexporter-tiny-perl (1.006002-1) ... 327s Setting up libterm-readkey-perl (2.38-2build4) ... 327s Setting up python3-mpmath (1.3.0-1) ... 327s Setting up python3-argcomplete (3.4.0-1) ... 327s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ... 327s Setting up libwebpmux3:ppc64el (1.4.0-0.1) ... 327s Setting up gff2aplot (2.0-15) ... 327s Setting up node-normalize.css (8.0.1-5) ... 327s Setting up python3-appdirs (1.4.4-4) ... 328s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 328s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 328s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 328s Setting up liburi-perl (5.28-1) ... 328s Setting up sqlite3 (3.46.0-1) ... 328s Setting up libdbi-perl:ppc64el (1.643-4build3) ... 328s Setting up liblsan0:ppc64el (14.1.0-1ubuntu1) ... 328s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 328s Setting up libitm1:ppc64el (14.1.0-1ubuntu1) ... 328s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 328s Setting up libnet-ssleay-perl:ppc64el (1.94-1build4) ... 328s Setting up python3-sympy (1.12-8) ... 337s Setting up libaprutil1t64:ppc64el (1.6.3-2ubuntu1) ... 337s Setting up libice6:ppc64el (2:1.0.10-1build3) ... 337s Setting up libhttp-date-perl (6.06-1) ... 337s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 337s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 337s Setting up libxft2:ppc64el (2.3.6-1build1) ... 337s Setting up libmbedx509-1t64:ppc64el (2.28.8-1) ... 337s Setting up python3-pysam (0.22.1+ds-2) ... 337s Setting up python3-cairo (1.26.0-1) ... 337s Setting up libfile-listing-perl (6.16-1) ... 337s Setting up python3-importlib-metadata (7.1.0-1) ... 337s Setting up libjs-scriptaculous (1.9.0-3) ... 337s Setting up liblist-moreutils-perl (0.430-2) ... 337s Setting up libtest-warn-perl (0.37-2) ... 337s Setting up libtk8.6:ppc64el (8.6.14-1build1) ... 337s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 337s Setting up libtest-differences-perl (0.71-1) ... 337s Setting up libnet-http-perl (6.23-1) ... 337s Setting up libdbd-pg-perl (3.18.0-1build3) ... 337s Setting up libexception-class-perl (1.45-1) ... 337s Setting up libaprutil1-ldap:ppc64el (1.6.3-2ubuntu1) ... 337s Setting up xfonts-utils (1:7.7+6build3) ... 337s Setting up libaprutil1-dbd-sqlite3:ppc64el (1.6.3-2ubuntu1) ... 337s Setting up libxml-sax-perl (1.02+dfsg-3) ... 337s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... 338s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 338s 338s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version 338s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 338s Setting up samtools (1.20-3) ... 338s Setting up python3-fs (2.4.16-4) ... 338s Setting up libthai0:ppc64el (0.1.29-2build1) ... 338s Setting up python3-xopen (1.7.0-2) ... 338s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 338s Setting up pandoc (3.1.3+ds-3build1) ... 338s Setting up libtest-exception-perl (0.43-3) ... 338s Setting up python3-rlpycairo (0.3.0-3) ... 338s Setting up libraqm0:ppc64el (0.10.1-1build1) ... 338s Setting up python3-numpy (1:1.26.4+ds-10) ... 341s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ... 341s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... 341s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... 341s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... 342s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version 342s Setting up libwww-robotrules-perl (6.02-1) ... 342s Setting up libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 342s Setting up libmbedtls14t64:ppc64el (2.28.8-1) ... 342s Setting up python3-lxml:ppc64el (5.2.1-1) ... 342s Setting up xml-core (0.19) ... 342s Setting up libhtml-parser-perl:ppc64el (3.82-1) ... 342s Setting up python3-contourpy (1.0.7-3) ... 342s Setting up libdbd-sqlite3-perl:ppc64el (1.74-1build3) ... 342s Setting up libsm6:ppc64el (2:1.2.3-1build3) ... 342s Setting up libio-socket-ssl-perl (2.085-1) ... 342s Setting up libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 342s Setting up python3-dnaio (1.2.0-2build1) ... 343s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1build1) ... 343s Setting up libhttp-message-perl (6.45-1ubuntu1) ... 343s Setting up apache2-utils (2.4.59-2ubuntu2) ... 343s Setting up python3-pyfaidx (0.8.1.1-2) ... 343s Setting up libhttp-negotiate-perl (6.01-2) ... 343s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ... 343s Setting up python3-pybedtools (0.10.0-1) ... 343s Setting up libboost1.83-dev:ppc64el (1.83.0-3ubuntu1) ... 343s Setting up libstatistics-descriptive-perl (3.0801-1) ... 343s Setting up python3-scipy (1.12.0-2) ... 349s Setting up libhttp-cookies-perl (6.11-1) ... 349s Setting up libtest-most-perl (0.38-1) ... 349s Setting up libhtml-tree-perl (5.07-3) ... 349s Setting up blt (2.5.3+dfsg-7build1) ... 349s Setting up python3-pomegranate (0.14.8-6) ... 349s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-8) ... 349s Setting up libpango-1.0-0:ppc64el (1.54.0+ds-1) ... 349s Setting up libcgi-pm-perl (4.65-1) ... 349s Setting up python3-sklearn-lib:ppc64el (1.4.2+dfsg-1) ... 349s Setting up python3-tk:ppc64el (3.12.3-0ubuntu1) ... 349s Setting up fonts-urw-base35 (20200910-8) ... 349s Setting up apache2-bin (2.4.59-2ubuntu2) ... 349s Setting up ncbi-blast+ (2.12.0+ds-4build2) ... 349s Setting up python3-pil:ppc64el (10.3.0-2) ... 350s Setting up python3-pandas (2.1.4+dfsg-8) ... 357s Setting up python3-cutadapt (4.7-2) ... 357s Setting up python3-pil.imagetk:ppc64el (10.3.0-2) ... 357s Setting up libcgi-session-perl (4.48-4) ... 357s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 357s Setting up python3-sklearn (1.4.2+dfsg-1) ... 360s Setting up libxml-simple-perl (2.25-2) ... 360s Setting up python3-reportlab (4.2.0-2) ... 361s Setting up libhttp-daemon-perl (6.16-1) ... 361s Setting up libboost-dev:ppc64el (1.83.0.1ubuntu2) ... 362s Setting up libpangoft2-1.0-0:ppc64el (1.54.0+ds-1) ... 362s Setting up proteinortho (6.3.1+dfsg-1) ... 362s Setting up libpangocairo-1.0-0:ppc64el (1.54.0+ds-1) ... 362s Setting up bioperl (1.7.8-1) ... 362s Setting up cutadapt (4.7-2) ... 362s Setting up apache2 (2.4.59-2ubuntu2) ... 362s Enabling module mpm_event. 362s Enabling module authz_core. 362s Enabling module authz_host. 362s Enabling module authn_core. 362s Enabling module auth_basic. 362s Enabling module access_compat. 362s Enabling module authn_file. 362s Enabling module authz_user. 362s Enabling module alias. 362s Enabling module dir. 362s Enabling module autoindex. 362s Enabling module env. 362s Enabling module mime. 362s Enabling module negotiation. 362s Enabling module setenvif. 362s Enabling module filter. 362s Enabling module deflate. 362s Enabling module status. 362s Enabling module reqtimeout. 362s Enabling conf charset. 362s Enabling conf localized-error-pages. 362s Enabling conf other-vhosts-access-log. 362s Enabling conf security. 362s Enabling conf serve-cgi-bin. 362s Enabling site 000-default. 362s info: Executing deferred 'a2enconf javascript-common' for package javascript-common 362s Enabling conf javascript-common. 363s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service. 364s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service. 366s Setting up libbio-coordinate-perl (1.7.1-4) ... 366s Setting up r-base-core (4.4.1-1) ... 366s 366s Creating config file /etc/R/Renviron with new version 366s Setting up r-cran-crayon (1.5.2-1) ... 366s Setting up r-cran-labeling (0.4.3-1) ... 366s Setting up r-cran-sourcetools (0.1.7-1-1) ... 366s Setting up r-cran-futile.options (1.0.1-3build1) ... 366s Setting up r-cran-lattice (0.22-6-1) ... 366s Setting up r-cran-nlme (3.1.165-1) ... 366s Setting up r-cran-farver (2.1.1-2) ... 366s Setting up r-cran-formatr (1.14-2) ... 366s Setting up r-cran-formula (1.2-5-1) ... 366s Setting up r-cran-xml (3.99-0.16.1-1) ... 366s Setting up trinityrnaseq-examples (2.15.1+dfsg-5build1) ... 366s Setting up r-cran-viridislite (0.4.2-2) ... 366s Setting up r-cran-cluster (2.1.6-1build1) ... 366s Setting up genometools-common (1.6.5+ds-2.2) ... 366s Setting up r-cran-nnet (7.3-19-2build1) ... 366s Setting up r-cran-lazyeval (0.2.2-1build1) ... 366s Setting up r-cran-commonmark (1.9.1-1) ... 366s Setting up r-cran-r6 (2.5.1-1) ... 366s Setting up r-cran-pkgkitten (0.2.3-1) ... 366s Setting up r-cran-jpeg (0.1-10-1) ... 366s Setting up r-cran-chron (2.3-61-2) ... 366s Setting up r-cran-magrittr (2.0.3-1) ... 366s Setting up r-cran-rappdirs (0.3.3-1) ... 366s Setting up r-cran-filelock (1.0.3-1) ... 366s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 366s Setting up r-cran-littler (0.3.20-1) ... 366s Setting up r-cran-bh (1.84.0-1) ... 366s Setting up r-cran-fs (1.6.3+dfsg-1build2) ... 366s Setting up r-cran-rcpp (1.0.12-1) ... 366s Setting up r-cran-curl (5.2.1+dfsg-1) ... 366s Setting up r-cran-codetools (0.2-20-1) ... 366s Setting up r-bioc-biocgenerics (0.48.1-2) ... 366s Setting up r-cran-rlang (1.1.4-1) ... 366s Setting up r-cran-matrixstats (1.3.0-1) ... 366s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 366s Setting up r-cran-xfun (0.44+dfsg-1) ... 366s Setting up r-cran-sys (3.4.2-1) ... 366s Setting up r-cran-plogr (0.2.0-3build1) ... 366s Setting up r-cran-withr (2.5.0-1) ... 366s Setting up r-cran-backports (1.4.1-1) ... 366s Setting up r-cran-mime (0.12-2) ... 366s Setting up r-cran-generics (0.1.3-1) ... 366s Setting up r-cran-base64enc (0.1-3-3) ... 366s Setting up r-cran-abind (1.4-5-2) ... 366s Setting up r-cran-digest (0.6.35-1) ... 366s Setting up r-cran-yaml (2.3.8-2) ... 366s Setting up r-cran-lambda.r (1.2.4-2build1) ... 366s Setting up r-bioc-protgenerics (1.34.0-1) ... 366s Setting up r-cran-evaluate (0.23-1) ... 366s Setting up r-cran-dbi (1.2.3-1) ... 366s Setting up r-cran-highr (0.11+dfsg-1) ... 366s Setting up r-cran-prettyunits (1.2.0-1) ... 366s Setting up r-cran-fansi (1.0.5-1) ... 366s Setting up r-cran-mass (7.3-61-1) ... 366s Setting up r-cran-checkmate (2.3.1-1) ... 366s Setting up r-cran-acepack (1.4.2-1) ... 366s Setting up r-cran-snow (1:0.4.4-2) ... 366s Setting up r-cran-data.table (1.15.4+dfsg-2.2) ... 366s Setting up r-cran-glue (1.7.0-1) ... 366s Setting up r-cran-foreign (0.8.86-1build1) ... 366s Setting up r-cran-bit (4.0.5-1) ... 366s Setting up r-cran-xtable (1:1.8-4-2) ... 366s Setting up r-cran-cli (3.6.2-1) ... 366s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 366s Setting up r-cran-bitops (1.0-7-1) ... 366s Setting up r-cran-bit64 (4.0.5-1) ... 366s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 366s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 366s Setting up r-cran-deldir (2.0-4-1build1) ... 366s Setting up r-cran-askpass (1.2.0-1) ... 366s Setting up r-cran-fastmap (1.1.1-1) ... 366s Setting up r-cran-png (0.1-8-1build2) ... 366s Setting up r-bioc-biobase (2.62.0-1) ... 366s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 366s Setting up r-cran-rstudioapi (0.16.0-1) ... 366s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 366s Setting up r-cran-utf8 (1.2.4-1) ... 366s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 366s Setting up r-cran-stringi (1.8.3-1) ... 366s Setting up r-cran-cpp11 (0.4.7-1) ... 366s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 366s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 366s Setting up r-cran-isoband (0.2.7-1) ... 366s Setting up r-cran-futile.logger (1.4.3-4build1) ... 366s Setting up r-cran-gtable (0.3.5+dfsg-1) ... 366s Setting up r-cran-later (1.3.2+dfsg-1) ... 366s Setting up r-cran-matrix (1.7-0-3) ... 366s Setting up r-cran-htmltools (0.5.8.1-1) ... 366s Setting up r-cran-tinytex (0.51-1) ... 366s Setting up r-cran-knitr (1.46+dfsg-1) ... 366s Setting up r-cran-mgcv (1.9-1-1) ... 366s Setting up r-bioc-dnacopy (1.76.0-1) ... 366s Setting up r-cran-cachem (1.0.8-1) ... 366s Setting up r-cran-sass (0.4.9+dfsg-1) ... 366s Setting up r-bioc-iranges (2.36.0-1) ... 366s Setting up r-cran-rjson (0.2.21-1) ... 366s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 366s Setting up r-cran-restfulr (0.0.15-1) ... 366s Setting up r-cran-vctrs (0.6.5-1) ... 366s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 366s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 366s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 366s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 366s Setting up r-cran-stringr (1.5.1-1) ... 366s Setting up r-bioc-biocparallel (1.36.0-1) ... 366s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 366s Setting up r-cran-xml2 (1.3.6-1) ... 366s Setting up r-cran-munsell (0.5.1-1) ... 366s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 366s Setting up r-cran-fontawesome (0.5.2-1) ... 366s Setting up r-cran-survival (3.7-0-1) ... 366s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 366s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 366s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 366s Setting up r-cran-interp (1.1-6-1) ... 366s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 366s Setting up r-cran-httr (1.4.7+dfsg-1) ... 366s Setting up r-cran-gridextra (2.3-3build1) ... 366s Setting up r-cran-hms (1.1.3-1) ... 366s Setting up r-cran-scales (1.3.0-1) ... 366s Setting up r-cran-memoise (2.0.1-1) ... 366s Setting up r-cran-promises (1.3.0+dfsg-1) ... 366s Setting up r-cran-purrr (1.0.2-1) ... 366s Setting up r-cran-blob (1.2.4-1) ... 366s Setting up r-bioc-xvector (0.42.0-1) ... 366s Setting up r-cran-dplyr (1.1.4-1) ... 366s Setting up r-cran-rsqlite (2.3.7-1) ... 366s Setting up r-cran-progress (1.2.3-1) ... 366s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 366s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 366s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 366s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 366s Setting up r-cran-rpart (4.1.23-1build1) ... 366s Setting up r-bioc-biostrings (2.70.3+dfsg-1) ... 366s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 366s Setting up r-cran-latticeextra (0.6-30-1) ... 366s Setting up r-cran-viridis (0.6.5-1) ... 366s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 366s Setting up r-cran-tidyr (1.3.1-1) ... 366s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build2) ... 366s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 366s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 366s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 366s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 366s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 366s Setting up r-bioc-annotationdbi (1.64.1-1) ... 366s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... 366s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 366s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 366s Setting up r-bioc-genomicalignments (1.38.2-1) ... 366s Setting up r-bioc-rtracklayer (1.62.0-1) ... 366s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 366s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 366s Setting up r-bioc-bsgenome (1.70.2-1) ... 366s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 366s Setting up r-bioc-variantannotation (1.48.1-1build2) ... 366s Setting up r-cran-htmltable (2.4.2-1) ... 366s Setting up r-cran-hmisc (5.1-3-1) ... 366s Setting up r-bioc-biovizbase (1.50.0-1) ... 366s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 366s Setting up liblwp-protocol-https-perl (6.14-1) ... 366s Setting up libwww-perl (6.77-1) ... 366s Setting up python3-fonttools (4.46.0-1build2) ... 367s Setting up libapache2-mod-perl2 (2.0.13-1build5) ... 368s apache2_invoke: Enable module perl 368s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 368s Setting up libbio-db-biofetch-perl (1.7.3-4) ... 368s Setting up python3-matplotlib (3.6.3-2ubuntu1) ... 370s Setting up libvm-ec2-perl (1.28-4) ... 370s Setting up libapache-dbi-perl (1.12-3) ... 370s Setting up libbio-db-gff-perl (1.7.4-1) ... 370s Setting up libbio-db-seqfeature-perl (1.7.4-2) ... 370s Setting up libbio-graphics-perl (2.40-6) ... 370s Setting up gbrowse (2.56+dfsg-12build3) ... 371s apache2_invoke: Enable configuration gbrowse 371s Processing triggers for man-db (2.12.1-2) ... 374s Processing triggers for install-info (7.1-3build2) ... 374s Processing triggers for libc-bin (2.39-0ubuntu9) ... 374s Processing triggers for ufw (0.36.2-6) ... 374s Processing triggers for sgml-base (1.31) ... 374s Setting up w3c-sgml-lib (1.3-3) ... 406s Setting up python3-biopython (1.83+dfsg1-3) ... 407s Setting up python3-gffutils (0.13-1) ... 408s Setting up cnvkit (0.9.10-2) ... 408s Setting up optimir (1.2-1) ... 408s /usr/lib/python3/dist-packages/optimir/libs/get_counts.py:453: SyntaxWarning: "is" with 'str' literal. Did you mean "=="? 408s if prefix is '': 408s Setting up autopkgtest-satdep (0) ... 421s (Reading database ... 138176 files and directories currently installed.) 421s Removing autopkgtest-satdep (0) ... 422s autopkgtest [01:10:20]: test run-tests: [----------------------- 422s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay. 422s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay. 422s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay. 422s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/output.gff: is okay. 423s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay. 423s /usr/share/bedtools/test/fisher/tumor.gff: is okay. 423s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay. 423s /usr/share/bedtools/test/intersect/gdc.gff: is okay. 423s /usr/share/bedtools/test/map/test.gff: is okay. 423s /usr/share/bedtools/test/merge/a.gff: is okay. 423s /usr/share/EMBOSS/data/Efeatures.gff2: is okay. 423s /usr/share/EMBOSS/data/Efeatures.gff3: is okay. 423s /usr/share/EMBOSS/data/Etags.gff2: is okay. 423s /usr/share/EMBOSS/data/Etags.gff3: is okay. 423s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay. 423s /usr/share/EMBOSS/test/data/eden1.gff3: is okay. 423s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay. 423s /usr/share/EMBOSS/test/data/gmod-align.gff3: is okay. 423s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 1050 1500 . + . ID=Match1;Name=agt830.5;Target=agt830.5 1 451 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 3000 3202 . + . ID=Match1;Name=agt830.5;Target=agt830.5 452 654 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 5410 5500 . - . ID=Match2;Name=agt830.3;Target=agt830.3 505 595 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 7000 7503 . - . ID=Match2;Name=agt830.3;Target=agt830.3 1 504 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 1050 1500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 1 451 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 5000 5500 . + . ID=Match3;Name=agt221.5;Target=agt221.5 452 952 423s Warning: unexpected tab character in last column, line truncated: 423s ctg123 est EST_match 7000 7300 . + . ID=Match3;Name=agt221.5;Target=agt221.5 953 1253 423s is okay. 423s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: Warning: unexpected tab character in last column, line truncated: 423s ctg123 example gene 1050 9000 . + . ID=EDEN;Name=EDEN;Note=protein kinase 423s is okay. 423s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay. 423s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay. 423s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay. 423s /usr/share/EMBOSS/test/data/hba.gff: is okay. 423s /usr/share/EMBOSS/test/data/noid.gff: is okay. 423s /usr/share/EMBOSS/test/data/paamir.gff: is okay. 423s /usr/share/EMBOSS/test/data/paamir.gff3: is okay. 423s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: Warning: unexpected tab character in last column, line truncated: 423s ctgA est HSP 7000 7300 . + . EST agt221.5 423s Warning: unexpected tab character in last column, line truncated: 423s ctgA est HSP 7000 7200 . + . EST agt767.5 423s is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: is okay. 423s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay. 423s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay. 423s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay. 423s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641"; Start 11597; End 12218; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641"; Start 7067; End 7448; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641"; Start 5482; End 6065; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641"; Start 11198; End 11485; Strand +; Frame .; 423s is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641"; Start 8002; End 8402; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641"; Start 8902; End 9636; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641"; Start 10806; End 11009; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641"; Start 6393; End 6618; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641"; Start 5138; End 5426; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641"; Start 7444; End 7714; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641"; Start 5378; End 5504; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641"; Start 11954; End 12278; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641"; Start 6827; End 6924; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641"; Start 1490; End 1610; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641"; Start 10064; End 10180; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641"; Start 3564; End 3694; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641"; Start 3724; End 3837; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641"; Start 3416; End 3528; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641"; Start 2801; End 2860; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641"; Start 10323; End 10493; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641"; Start 8752; End 8825; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641"; Start 2194; End 2253; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641"; Start 1390; End 1461; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641"; Start 6007; End 6180; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641"; Start 9981; End 10063; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641"; Start 8633; End 8708; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641"; Start 10246; End 10311; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641"; Start 10244; End 10543; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641"; Start 913; End 994; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641"; Start 929; End 1212; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641"; Start 6612; End 6673; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641"; Start 6314; End 6364; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641"; Start 1748; End 1853; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641"; Start 10512; End 10581; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641"; Start 4552; End 4647; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641"; Start 1283; End 1342; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641"; Start 3670; End 3715; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641"; Start 605; End 791; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641"; Start 8525; End 8585; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641"; Start 9592; End 9647; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641"; Start 8839; End 8979; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641"; Start 1290; End 1523; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 5219 5832 1405 + . Target "NM_005641" 11597 12218 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1719 2099 1122 + . Target "NM_005641" 706is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: 7 7448 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 664 1262 944 + . Target "NM_005641" 5482 6065 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 4851 5137 848 + . Target "NM_005641" 11198 11485 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2375 2778 834 + . Target "NM_005641" 8002 8402 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3109 3832 831 + . Target "NM_005641" 8902 9636 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 4535 4738 741 + . Target "NM_005641" 10806 11009 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1239 1462 724 + . Target "NM_005641" 6393 6618 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 1 292 691 + . Target "NM_005641" 5138 5426 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2116 2390 654 + . Target "NM_005641" 7444 7714 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 550 675 460 + . Target "NM_005641" 5378 5504 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 5558 5878 357 + . Target "NM_005641" 11954 12278 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3086 3175 253 + . Target "NM_005641" 6827 6924 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3079 3192 252 + . Target "NM_005641" 1490 1610 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3058 3177 212 + . Target "NM_005641" 10064 10180 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3083 3204 205 + . Target "NM_005641" 3564 3694 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3056 3172 204 + . Target "NM_005641" 3724 3837 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3061 3172 200 + . Target "NM_005641" 3416 3528 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3114 3172 195 + . Target "NM_005641" 2801 2860 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3028 3190 179 + . Target "NM_005641" 10323 10493 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3104 3175 178 + . Target "NM_005641" 8752 8825 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3114 3172 177 + . Target "NM_005641" 2194 2253 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3111 3177 177 + . Target "NM_005641" 1390 1461 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2757 2926 172 + . Target "NM_005641" 6007 6180 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2769 2855 170 + . Target "NM_005641" 9981 10063 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3118 3192 169 + . Target "NM_005641" 8633 8708 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3109 3172 165 + . Target "NM_005641" 10246 10311 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2710 3013 164 + . Target "NM_005641" 10244 10543 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3111 3190 164 + . Target "NM_005641" 913 994 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2728 3006 156 + . Target "NM_005641" 929 1212 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2788 2855 151 + . Target "NM_005641" 6612 6673 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3118 3167 150 + . Target "NM_005641" 6314 6364 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 357 463 150 + . Target "NM_005641" 1748 1853 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 3082 3156 149 + . Target "NM_005641" 10512 10581 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2710 2804 149 + . Target "NM_005641" 4552 4647 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2791 2855 142 + . Target "NM_005641" 1283 1342 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2797 2842 140 + . Target "NM_005641" 3670 3715 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2727 2911 139 + . Target "NM_005641" 605 791 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2804 2863 137 + . Target "NM_005641" 8525 8585 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 399 453 132 + . Target "NM_005641" 9592 9647 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2811 2950 128 + . Target "NM_005641" 8839 8979 + .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 BLASTN hsp 2783 3006 127 + . Target "NM_005641" 1290 1523 + .; 423s is okay. 423s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4867 5778 839 + . Target "NM_005641"; Start 11212; End 12162; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4874 5785 645 + . Target "NM_005641"; Start 11219; End 12151; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2379 2621 344 + . Target "NM_005641"; Start 8006; End 8248; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 673 1017 321 + . Target "NM_005641"; Start 5471; End 5833; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4519 4773 315 + . Target "NM_005641"; Start 10778; End 11065; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1719 1913 285 + . Target "NM_005641"; Start 7067; End 7261; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2 172 262 + . Target "NM_005641"; Start 5139; End 5309; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1212 1409 252 + . Target "NM_005641"; Start 6373; End 6564; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 762 1061 252 + . Target "NM_005641"; Start 5572; End 5880; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3432 3638 247 + . Target "NM_005641"; Start 9233; End 9439; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2378 2605 227 + . Target "NM_005641"; Start 8005; End 8232; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3140 3613 194 + . Target "NM_005641"; Start 8935; End 9414; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2116 2373 190 + . Target "NM_005641"; Start 7444; End 7698; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 6 173 188 + . Target "NM_005641"; Start 5143; End 5310; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 505 738 187 + . Target "NM_005641"; Start 5322; End 5579; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 7 174 184 + . Target "NM_005641"; Start 5144; End 5311; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1228 1458 178 + . Target "NM_005641"; Start 6368; End 6613; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1906 2100 159 + . Target "NM_005641"; Start 7265; End 7450; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1980 2348 159 + . Target "NM_005641"; Start 7329; End 7676; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1941 2126 136 + . Target "NM_005641"; Start 7288; End 7482; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1104 1226 135 + . Target "NM_005641"; Start 5927; End 6040; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5612 5878 94 + . Target "NM_005641"; Start 12030; End 12278; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2791 2877 73 + . Target "NM_005641"; Start 676; End 744; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3083 3175 71 + . Target "NM_005641"; Start 10044; End 10178; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2773 2880 71 + . Target "NM_005641"; Start 1278; End 1358; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 683 787 65 + . Target "NM_005641"; Start 3408; End 3518; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3503 3724 63 + . Target "NM_005641"; Start 11672; End 11920; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 405 464 61 + . Target "NM_005641"; Start 1930; End 1989; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2790 3026 61 + . Target "NM_005641"; Start 6614; End 6844; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4895 5158 60 + . Target "NM_005641"; Start 11942; End 12223; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4097 60 + . Target "NM_005641"; Start 6339; End 6395; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2785 2850 59 + . Target "NM_005641"; Start 10005; End 10058; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 686 784 59 + . Target "NM_005641"; Start 6667; End 6771; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3121 3186 59 + . Target "NM_005641"; Start 6873; End 6935; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3028 3171 59 + . Target "NM_005641"; Start 3684; End 3836; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3123 3182 59 + . Target "NM_005641"; Start 2946; End 3005; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 304 519 55 + . Target "NM_005641"; Start 9309; End 9518; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4100 54 + . Target "NM_005641"; Start 10281; End 10340; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4047 4109 54 + . Target "NM_005641"; Start 8664; End 8726; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3031 3174 53 + . Target "NM_005641"; Start 10322; End 10477; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 686 772 53 + . Target "NM_005641"; Start 3720; End 3812; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2770 2850 53 + . Target "NM_005641"; Start 6603; End 6668; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3136 3177 53 + . Target "NM_005641"; Start 1110; End 1151; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4579 4647 52 + . Target "NM_005641"; Start 8188; End 8256; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3028 3141 52 + . Target "NM_005641"; Start 685; End 810; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2804 2836 51 + . Target "NM_005641"; Start 8525; End 8557; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3095 3175 51 + . Target "NM_005641"; Start 10407; End 10478; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4002 4097 51 + . Target "NM_005641"; Start 4547; End 4645; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4166 4249 50 + . Target "NM_005641"; Start 7241; End 7333; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5536 5694 50 + . Target "NM_005641"; Start 11141; End 11311; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 555 608 50 + . Target "NM_005641"; Start 7342; End 7392; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 405 464 50 + . Target "NM_005641"; Start 7849; End 7908; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1447 1500 49 + . Target "NM_005641"; Start 6928; End 6978; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2916 3011 49 + . Target "NM_005641"; Start 10443; End 10541; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 931 1125 49 + . Target "NM_005641"; Start 5746; End 5943; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1501 1587 49 + . Target "NM_005641"; Start 7763; End 7849; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3028 3168 49 + . Target "NM_005641"; Start 1465; End 1587; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3121 3168 48 + . Target "NM_005641"; Start 6321; End 6365; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2792 2842 48 + . Target "NM_005641"; Start 3674; End 3715; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3083 3139 48 + . Target "NM_005641"; Start 4520; End 4585; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4029 4091 48 + . Target "NM_005641"; Start 2821; End 2880; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2913 2969 47 + . Target "NM_005641"; Start 8482; End 8538; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3118 3150 47 + . Target "NM_005641"; Start 10544; End 10576; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4047 4097 47 + . Target "NM_005641"; Start 8493; End 8543; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 689 784 47 + . Target "NM_005641"; Start 4665; End 4766; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3086 3115 47 + . Target "NM_005641"; Start 6827; End 6856; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3083 3121 47 + . Target "NM_005641"; Start 6654; End 6692; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3056 3211 47 + . Target "NM_005641"; Start 2989; End 3156; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3136 3168 46 + . Target "NM_005641"; Start 10275; End 10307; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 408 476 46 + . Target "NM_005641"; Start 1798; End 1866; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4888 4950 46 + . Target "NM_005641"; Start 10422; End 10484; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 546 590 46 + . Target "NM_005641"; Start 3051; End 3086; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2806 2844 46 + . Target "NM_005641"; Start 6047; End 6094; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5758 5823 46 + . Target "NM_005641"; Start 10842; End 10907; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2794 2871 46 + . Target "NM_005641"; Start 3670; End 3747; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3621 3713 46 + . Target "NM_005641"; Start 4612; End 4704; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1143 1187 45 + . Target "NM_005641"; Start 8580; End 8624; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3029 3121 45 + . Target "NM_005641"; Start 1299; End 1361; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4047 4091 45 + . Target "NM_005641"; Start 3813; End 3857; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4233 4304 45 + . Target "NM_005641"; Start 2166; End 2240; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4353 4457 45 + . Target "NM_005641"; Start 2071; End 2172; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3817 3882 44 + . Target "NM_005641"; Start 9908; End 9973; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3012 3152 44 + . Target "NM_005641"; Start 8506; End 8667; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3144 3176 44 + . Target "NM_005641"; Start 10447; End 10479; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5430 5534 44 + . Target "NM_005641"; Start 9313; End 9423; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4655 4735 44 + . Target "NM_005641"; Start 6495; End 6575; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3793 3849 44 + . Target "NM_005641"; Start 5563; End 5619; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3118 3165 44 + . Target "NM_005641"; Start 3610; End 3654; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3083 3166 44 + . Target "NM_005641"; Start 1017; End 1100; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5625 5684 44 + . Target "NM_005641"; Start 5493; End 5552; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3138 3176 43 + . Target "NM_005641"; Start 8788; End 8826; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3654 3728 43 + . Target "NM_005641"; Start 9429; End 9503; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 405 476 43 + . Target "NM_005641"; Start 4206; End 4277; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 856 978 43 + . Target "NM_005641"; Start 6448; End 6570; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1600 1629 43 + . Target "NM_005641"; Start 4298; End 4327; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5434 5481 43 + . Target "NM_005641"; Start 10718; End 10765; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3075 3125 43 + . Target "NM_005641"; Start 11897; End 11947; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2978 3019 43 + . Target "NM_005641"; Start 3874; End 3915; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4091 43 + . Target "NM_005641"; Start 1561; End 1608; Strand +; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4866 5786 772 - . Target "NM_005641"; Start 11211; End 12152; Strand -; Frame .; 423s Warniis okay. 423s ng: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2258 2611 309 - . Target "NM_005641"; Start 7852; End 8238; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 762 1058 293 - . Target "NM_005641"; Start 5572; End 5877; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4518 4721 290 - . Target "NM_005641"; Start 10777; End 10992; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1718 1912 261 - . Target "NM_005641"; Start 7066; End 7260; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3392 3643 250 - . Target "NM_005641"; Start 9172; End 9441; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4 174 236 - . Target "NM_005641"; Start 5141; End 5311; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1259 1408 235 - . Target "NM_005641"; Start 6414; End 6563; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2116 2349 209 - . Target "NM_005641"; Start 7444; End 7677; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3 173 192 - . Target "NM_005641"; Start 5140; End 5310; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2 172 190 - . Target "NM_005641"; Start 5139; End 5309; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2112 2345 166 - . Target "NM_005641"; Start 7440; End 7673; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1998 2099 148 - . Target "NM_005641"; Start 7348; End 7449; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3291 3386 137 - . Target "NM_005641"; Start 9067; End 9162; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 554 769 135 - . Target "NM_005641"; Start 5386; End 5583; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1118 1225 125 - . Target "NM_005641"; Start 5941; End 6039; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5705 5878 83 - . Target "NM_005641"; Start 12081; End 12278; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5677 5877 76 - . Target "NM_005641"; Start 12065; End 12277; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3036 3185 73 - . Target "NM_005641"; Start 6791; End 6934; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3030 3167 67 - . Target "NM_005641"; Start 6242; End 6364; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 930 1091 66 - . Target "NM_005641"; Start 5745; End 5909; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3052 3177 65 - . Target "NM_005641"; Start 10013; End 10180; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4035 4103 65 - . Target "NM_005641"; Start 2824; End 2886; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2978 3142 64 - . Target "NM_005641"; Start 2639; End 2797; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3139 3177 61 - . Target "NM_005641"; Start 1113; End 1151; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3915 4103 60 - . Target "NM_005641"; Start 8367; End 8549; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2999 3148 60 - . Target "NM_005641"; Start 686; End 817; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3136 3180 59 - . Target "NM_005641"; Start 10439; End 10483; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3089 3190 58 - . Target "NM_005641"; Start 884; End 994; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 10281; End 10340; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2769 2870 57 - . Target "NM_005641"; Start 5032; End 5118; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4103 57 - . Target "NM_005641"; Start 3807; End 3863; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3121 3177 56 - . Target "NM_005641"; Start 1405; End 1461; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 638 715 56 - . Target "NM_005641"; Start 10988; End 11065; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3115 3186 55 - . Target "NM_005641"; Start 6849; End 6935; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3089 3166 55 - . Target "NM_005641"; Start 4821; End 4907; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 399 542 54 - . Target "NM_005641"; Start 1789; End 1911; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2789 2944 54 - . Target "NM_005641"; Start 1282; End 1452; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3041 3163 54 - . Target "NM_005641"; Start 2112; End 2240; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 5574 5693 53 - . Target "NM_005641"; Start 11203; End 11310; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2728 3000 53 - . Target "NM_005641"; Start 4572; End 4838; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2986 3189 53 - . Target "NM_005641"; Start 3493; End 3678; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 399 503 53 - . Target "NM_005641"; Start 9591; End 9707; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 405 467 52 - . Target "NM_005641"; Start 1930; End 1992; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2785 3006 52 - . Target "NM_005641"; Start 2692; End 2925; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3142 3171 52 - . Target "NM_005641"; Start 3807; End 3836; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3139 3195 52 - . Target "NM_005641"; Start 1558; End 1614; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 224 295 51 - . Target "NM_005641"; Start 298; End 369; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2784 2855 51 - . Target "NM_005641"; Start 10004; End 10063; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2787 2855 51 - . Target "NM_005641"; Start 6611; End 6673; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3135 3176 51 - . Target "NM_005641"; Start 1109; End 1150; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3032 3148 50 - . Target "NM_005641"; Start 8535; End 8663; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3918 4088 50 - . Target "NM_005641"; Start 8541; End 8705; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3122 3190 50 - . Target "NM_005641"; Start 2945; End 3013; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3577 3663 50 - . Target "NM_005641"; Start 3545; End 3634; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2659 2865 49 - . Target "NM_005641"; Start 5924; End 6115; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3121 3171 49 - . Target "NM_005641"; Start 3480; End 3527; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3118 3171 49 - . Target "NM_005641"; Start 2809; End 2859; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 399 521 48 - . Target "NM_005641"; Start 4200; End 4301; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3135 3173 48 - . Target "NM_005641"; Start 10438; End 10476; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2905 3006 48 - . Target "NM_005641"; Start 6192; End 6299; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4020 4103 48 - . Target "NM_005641"; Start 2202; End 2279; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3139 3189 47 - . Target "NM_005641"; Start 10278; End 10328; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1973 2083 47 - . Target "NM_005641"; Start 1531; End 1635; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4043 4114 47 - . Target "NM_005641"; Start 3809; End 3883; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4227 4262 46 - . Target "NM_005641"; Start 10701; End 10736; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3142 3177 46 - . Target "NM_005641"; Start 8487; End 8522; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 10442; End 10495; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3577 3639 46 - . Target "NM_005641"; Start 10736; End 10804; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3077 3163 46 - . Target "NM_005641"; Start 6691; End 6771; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1179 1295 46 - . Target "NM_005641"; Start 7256; End 7369; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4040 4096 46 - . Target "NM_005641"; Start 6338; End 6394; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2915 2968 46 - . Target "NM_005641"; Start 3495; End 3548; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 903 1046 45 - . Target "NM_005641"; Start 41; End 181; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1882 1920 45 - . Target "NM_005641"; Start 9717; End 9755; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2138 2248 45 - . Target "NM_005641"; Start 207; End 329; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4556 4660 45 - . Target "NM_005641"; Start 6331; End 6435; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2802 2915 45 - . Target "NM_005641"; Start 3675; End 3797; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4041 4067 45 - . Target "NM_005641"; Start 812; End 838; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3104 3148 44 - . Target "NM_005641"; Start 10530; End 10574; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 949 984 44 - . Target "NM_005641"; Start 6325; End 6360; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 2110 2166 44 - . Target "NM_005641"; Start 12002; End 12058; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4348 4377 44 - . Target "NM_005641"; Start 2060; End 2089; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3140 3181 43 - . Target "NM_005641"; Start 8790; End 8831; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4529 4606 43 - . Target "NM_005641"; Start 10185; End 10262; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 1189 1383 43 - . Target "NM_005641"; Start 6370; End 6537; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3119 3193 43 - . Target "NM_005641"; Start 4864; End 4938; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 3120 3167 43 - . Target "NM_005641"; Start 1542; End 1586; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 632 706 43 - . Target "NM_005641"; Start 9145; End 9219; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4355 4378 43 - . Target "NM_005641"; Start 2069; End 2092; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4352 4402 43 - . Target "NM_005641"; Start 2070; End 2120; Strand -; Frame .; 423s Warning: unexpected tab character in last column, line truncated: 423s NM_009315 TBLASTX hsp 4639 4668 43 - . Target "NM_005641"; Start 3306; End 3335; Strand -; Frame .; 423s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 1728 1787 0.09 - 0 gene_1 # AA 212:231 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 2506 2618 2.93 - 2 gene_1 # AA 174:211 423s is okay. 423s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: is okay. 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 4112 4225 0.50 - 2 gene_1 # AA 136:174 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 8833 8959 -0.24 - 0 gene_1 # AA 94:136 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 9956 10089 1.98 - 2 gene_1 # AA 49: 93 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 13081 13159 0.13 - 0 gene_1 # AA 23: 49 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 13984 14049 -0.61 - 0 gene_1 # AA 1: 22 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Terminal 17520 17785 4.22 - 2 gene_2 # AA 86:174 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 19296 19551 14.31 - 0 gene_2 # AA 1: 86 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Terminal 76391 76462 1.12 - 0 gene_3 # AA 636:659 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 79700 79857 1.52 - 2 gene_3 # AA 583:635 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 80376 80494 0.93 - 1 gene_3 # AA 543:583 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 81136 81200 0.46 - 0 gene_3 # AA 522:543 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 82558 82774 5.08 - 1 gene_3 # AA 449:521 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 83290 83533 4.90 - 2 gene_3 # AA 368:449 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 84816 84943 0.10 - 1 gene_3 # AA 325:368 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 85123 85202 1.44 - 0 gene_3 # AA 299:325 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 85799 85853 0.18 - 1 gene_3 # AA 280:298 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 86594 86656 1.66 - 1 gene_3 # AA 259:280 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 87074 87261 4.48 - 0 gene_3 # AA 197:259 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 88679 88746 -0.20 - 2 gene_3 # AA 174:196 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 89067 89195 2.37 - 2 gene_3 # AA 131:174 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 96504 96585 -1.14 - 0 gene_3 # AA 104:131 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 98139 98207 2.20 - 0 gene_3 # AA 81:103 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 101042 101140 1.03 - 0 gene_3 # AA 48: 80 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 101650 101790 2.04 - 0 gene_3 # AA 1: 47 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 117154 117294 -1.72 + 0 gene_4 # AA 1: 47 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 117965 118070 4.71 + 0 gene_4 # AA 48: 83 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 118261 118328 1.96 + 2 gene_4 # AA 83:105 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Terminal 122234 122254 -1.95 + 0 gene_4 # AA 106:112 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Terminal 124315 124605 1.49 - 0 gene_5 # AA 321:417 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 124876 125073 4.19 - 0 gene_5 # AA 255:320 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 125291 125452 1.81 - 0 gene_5 # AA 201:254 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 128085 128315 6.42 - 0 gene_5 # AA 124:200 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 130317 130491 3.37 - 1 gene_5 # AA 65:123 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 134216 134409 3.06 - 0 gene_5 # AA 1: 65 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Single 138576 139844 33.14 + 0 gene_6 # AA 1:423 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 First 144801 145043 4.49 + 0 gene_7 # AA 1: 81 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 170448 170661 4.00 + 0 gene_7 # AA 82:153 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK geneid_v1.0 Internal 172504 172550 0.78 + 2 gene_7 # AA 153:168 423s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 4565 4627 8.56 - 0 gene_1 # AA 149:169 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 9956 10143 23.75 - 2 gene_1 # AA 86:148 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 62698 62700 -9.86 + 0 gene_2 # AA 1: 1 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 67179 67508 54.90 + 0 gene_2 # AA 2:111 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 73005 73235 25.73 - 0 gene_3 # AA 75:151 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 74949 75170 18.73 - 0 gene_3 # AA 1: 74 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 79661 79857 26.63 - 2 gene_4 # AA 643:708 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 80376 80494 21.80 - 1 gene_4 # AA 603:643 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 81136 81200 -1.59 - 0 gene_4 # AA 582:603 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 82558 82813 51.33 - 1 gene_4 # AA 496:581 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 83290 83533 36.85 - 2 gene_4 # AA 415:496 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 84015 84089 4.73 - 2 gene_4 # AA 390:415 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 84816 84943 22.24 - 1 gene_4 # AA 347:390 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 85123 85202 -0.04 - 0 gene_4 # AA 321:347 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 85799 85853 7.75 - 1 gene_4 # AA 302:320 423s is okay. 423s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 86594 86656 13.00 - 1 gene_4 # AA 281:302 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 87074 87261 30.63 - 0 gene_4 # AA 219:281 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 88679 88746 2.93 - 2 gene_4 # AA 196:218 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 89067 89195 23.15 - 2 gene_4 # AA 153:196 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 96504 96585 8.97 - 0 gene_4 # AA 126:153 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 98139 98207 0.53 - 0 gene_4 # AA 103:125 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 101042 101140 16.57 - 0 gene_4 # AA 70:102 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 101650 101856 25.46 - 0 gene_4 # AA 1: 69 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 117550 117552 -2.98 + 0 gene_5 # AA 1: 1 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 117965 118070 22.92 + 0 gene_5 # AA 2: 37 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 118261 118328 16.58 + 2 gene_5 # AA 37: 59 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 121841 121963 15.59 + 0 gene_5 # AA 60:100 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 122234 122254 -4.89 + 0 gene_5 # AA 101:107 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 124315 124605 22.92 - 0 gene_6 # AA 299:395 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 124876 125073 18.14 - 0 gene_6 # AA 233:298 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 125291 125439 21.75 - 2 gene_6 # AA 183:232 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 128138 128315 26.47 - 0 gene_6 # AA 124:183 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Internal 130317 130491 29.80 - 1 gene_6 # AA 65:123 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 134216 134409 27.80 - 0 gene_6 # AA 1: 65 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Single 138495 139844 385.08 + 0 gene_7 # AA 1:450 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X First 143504 143527 -6.11 + 0 gene_8 # AA 1: 8 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.3X Terminal 170195 170470 60.77 + 0 gene_8 # AA 9:100 423s is okay. 423s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 2506 2618 3.13 - 2 gene_1 # AA 86:123 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 19296 19551 15.97 - 0 gene_1 # AA 1: 86 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Terminal 73005 73166 23.20 - 0 gene_2 # AA 45: 98 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 75039 75170 14.19 - 0 gene_2 # AA 1: 44 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Terminal 76391 76462 7.44 - 0 gene_3 # AA 692:715 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 79700 79857 27.01 - 2 gene_3 # AA 639:691 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 80376 80494 22.45 - 1 gene_3 # AA 599:639 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 81136 81200 8.61 - 0 gene_3 # AA 578:599 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 82558 82774 44.53 - 1 gene_3 # AA 505:577 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 83290 83533 36.85 - 2 gene_3 # AA 424:505 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 84015 84089 4.73 - 2 gene_3 # AA 399:424 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 84816 84943 22.49 - 1 gene_3 # AA 356:399 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 85123 85202 -0.04 - 0 gene_3 # AA 330:356 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 85799 85853 7.75 - 1 gene_3 # AA 311:329 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 86594 86656 13.00 - 1 gene_3 # AA 290:311 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 87074 87261 30.63 - 0 gene_3 # AA 228:290 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 88679 88746 2.93 - 2 gene_3 # AA 205:227 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 89067 89195 23.15 - 2 gene_3 # AA 162:205 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 96504 96585 8.97 - 0 gene_3 # AA 135:162 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 98139 98207 9.18 - 0 gene_3 # AA 112:134 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 101042 101140 16.57 - 0 gene_3 # AA 79:111 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 101650 101839 30.76 - 1 gene_3 # AA 15: 78 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 112445 112488 -1.77 - 0 gene_3 # AA 1: 15 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 117550 117552 -2.98 + 0 gene_4 # AA 1: 1 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 117965 118070 22.92 + 0 gene_4 # AA 2: 37 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 118261 118328 16.58 + 2 gene_4 # AA 37: 59 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 121841 121963 15.59 + 0 gene_4 # AA 60:100 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Terminal 122234 122254 -4.89 + 0 gene_4 # AA 101:107 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Terminal 124315 124605 22.92 - 0 gene_5 # AA 334:430 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 124876 125073 37.51 - 0 gene_5 # AA 268:333 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 125291 125452 26.77 - 0 gene_5 # AA 214:267 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 127172 127263 5.78 - 2 gene_5 # AA 183:213 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 128138 128315 37.95 - 0 gene_5 # AA 124:183 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 130317 130491 30.15 - 1 gene_5 # AA 65:123 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 134216 134409 27.80 - 0 gene_5 # AA 1: 65 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Single 138495 139844 270.80 + 0 gene_6 # AA 1:450 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol First 170637 170661 -0.90 + 0 gene_7 # AA 1: 9 423s Warning: unexpected tab character in last column, line truncated: 423s Hsap_BTK SGP.homol Internal 172504 172550 2.43 + 2 gene_7 # AA 9: 24 423s is okay. 423s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay. 423s /usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay. 423s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay. 423s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/ITAG4.1_gene_models.subset.gff: is okay. 423s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff: is okay. 423s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3: is okay. 423s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3: is okay. 423s /usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff: is okay. 423s /usr/lib/R/site-library/Gviz/extdata/test.gff: is okay. 423s /usr/lib/R/site-library/Gviz/extdata/test.gff1: is okay. 423s /usr/lib/R/site-library/Gviz/extdata/test.gff3: is okay. 423s /usr/lib/R/site-library/Rhtslib/testdata/tabix/gff_file.gff: is okay. 423s /usr/lib/R/site-library/rtracklayer/tests/gtf.gff: Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22572990 22573061 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 423s Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22572990 22573010 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310143.1"; 423s Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22568081 22568323 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 423s Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22568081 22568323 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310133.1"; 423s Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL exon 22566859 22567246 . - . gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 423s Warning: unexpected tab character in last column, line truncated: 423s Mm.16.ENSMUST00000040592.1 EnsEMBL CDS 22566977 22567246 . - 0 gene_id "ENSMUSG00000033501.1"; transcript_id "ENSMUST00000040592.1"; exon_id "ENSMUSE00000310124.1"; 423s is okay. 423s /usr/lib/R/site-library/rtracklayer/tests/v1.gff: is okay. 423s /usr/lib/R/site-library/rtracklayer/tests/v3.gff: is okay. 423s /usr/share/doc/seqan-apps/gustaf/example/stellar.gff: is okay. 423s /usr/share/doc/seqan-apps/insegt/example/annotations.gff: is okay. 423s /usr/share/doc/seqan-apps/insegt/example/readOutput.gff: is okay. 423s /usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff: is okay. 423s /usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff: is okay. 423s /usr/share/trinityrnaseq/sample_data/test_Trinity_Assembly/__indiv_ex_sample_derived/ex05/isoform_pair.fasta.gmap.gff: is okay. 423s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay. 423s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v21.gff3: is okay. 423s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRBase_v22.gff3: is okay. 423s /usr/lib/python3/dist-packages/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3: is okay. 424s /usr/share/doc/proteinortho/examples/C.gff: is okay. 424s /usr/share/doc/proteinortho/examples/C2.gff: is okay. 424s /usr/share/doc/proteinortho/examples/E.gff: is okay. 424s /usr/share/doc/proteinortho/examples/L.gff: is okay. 424s /usr/share/doc/proteinortho/examples/M.gff: is okay. 424s /usr/lib/python3/dist-packages/pybedtools/test/data/d.gff: is okay. 424s /usr/lib/python3/dist-packages/pybedtools/test/data/exons.gff: is okay. 424s /usr/lib/python3/dist-packages/pybedtools/test/data/gdc.gff: is okay. 424s /usr/lib/python3/dist-packages/pybedtools/test/data/hg19.gff: is okay. 424s autopkgtest [01:10:22]: test run-tests: -----------------------] 424s autopkgtest [01:10:22]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 424s run-tests PASS 425s autopkgtest [01:10:23]: @@@@@@@@@@@@@@@@@@@@ summary 425s run-tests PASS 436s nova [W] Using flock in scalingstack-bos02-ppc64el 436s Creating nova instance adt-oracular-ppc64el-gffread-20240621-010318-juju-7f2275-prod-proposed-migration-environment-2-81c72290-3ac5-4753-b0e3-289ab1baea42 from image adt/ubuntu-oracular-ppc64el-server-20240619.img (UUID 18374366-a0bb-40e6-b5b5-94d10809a9b7)...