0s autopkgtest [06:55:52]: starting date and time: 2024-05-29 06:55:52+0000 0s autopkgtest [06:55:52]: git checkout: 930f72e5 setup-testbed: don't install 'Recommends' for 'linux-generic' 0s autopkgtest [06:55:52]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o6u31v39/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dazzdb --apt-upgrade daligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dazzdb/1.0+git20240115.be65e59-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-9.secgroup --name adt-oracular-ppc64el-daligner-20240529-065552-juju-7f2275-prod-proposed-migration-environment-3-36170e59-7204-4705-9386-09e4e2759992 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 91s autopkgtest [06:57:23]: testbed dpkg architecture: ppc64el 91s autopkgtest [06:57:23]: testbed apt version: 2.9.3 91s autopkgtest [06:57:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 92s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 93s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2568 B] 93s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [58.2 kB] 93s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [508 kB] 93s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 93s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [129 kB] 93s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [556 kB] 93s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1392 B] 93s Fetched 1330 kB in 1s (1361 kB/s) 93s Reading package lists... 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 98s Reading package lists... 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s Calculating upgrade... 98s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 98s Reading package lists... 98s Building dependency tree... 98s Reading state information... 99s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s autopkgtest [06:57:33]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 101s autopkgtest [06:57:33]: @@@@@@@@@@@@@@@@@@@@ apt-source daligner 103s Get:1 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (dsc) [2287 B] 103s Get:2 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (tar) [128 kB] 103s Get:3 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (diff) [6212 B] 103s gpgv: Signature made Wed Mar 13 20:41:30 2024 UTC 103s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 103s gpgv: issuer "emollier@debian.org" 103s gpgv: Can't check signature: No public key 103s dpkg-source: warning: cannot verify inline signature for ./daligner_1.0+git20240119.335105d-2.dsc: no acceptable signature found 103s autopkgtest [06:57:35]: testing package daligner version 1.0+git20240119.335105d-2 104s autopkgtest [06:57:36]: build not needed 105s autopkgtest [06:57:37]: test run-unit-test: preparing testbed 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s The following additional packages will be installed: 107s daligner dazzdb 107s Suggested packages: 107s dascrubber 107s The following NEW packages will be installed: 107s autopkgtest-satdep daligner dazzdb 107s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 332 kB/332 kB of archives. 107s After this operation, 2685 kB of additional disk space will be used. 107s Get:1 /tmp/autopkgtest.QVq1Fy/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B] 107s Get:2 http://ftpmaster.internal/ubuntu oracular/universe ppc64el daligner ppc64el 1.0+git20240119.335105d-2 [172 kB] 108s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el dazzdb ppc64el 1.0+git20240115.be65e59-1 [159 kB] 108s Fetched 332 kB in 1s (412 kB/s) 108s Selecting previously unselected package daligner. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72607 files and directories currently installed.) 108s Preparing to unpack .../daligner_1.0+git20240119.335105d-2_ppc64el.deb ... 108s Unpacking daligner (1.0+git20240119.335105d-2) ... 108s Selecting previously unselected package dazzdb. 108s Preparing to unpack .../dazzdb_1.0+git20240115.be65e59-1_ppc64el.deb ... 108s Unpacking dazzdb (1.0+git20240115.be65e59-1) ... 108s Selecting previously unselected package autopkgtest-satdep. 108s Preparing to unpack .../1-autopkgtest-satdep.deb ... 108s Unpacking autopkgtest-satdep (0) ... 108s Setting up dazzdb (1.0+git20240115.be65e59-1) ... 108s Setting up daligner (1.0+git20240119.335105d-2) ... 108s Setting up autopkgtest-satdep (0) ... 108s Processing triggers for man-db (2.12.1-1) ... 110s (Reading database ... 72684 files and directories currently installed.) 110s Removing autopkgtest-satdep (0) ... 111s autopkgtest [06:57:43]: test run-unit-test: [----------------------- 112s You are about to overwrite the current partition settings. This 112s will invalidate any tracks, overlaps, and other derivative files. 112s Are you sure you want to proceed? [Y/N] DBstats: Warning: -mdust option given but no track found. 112s 112s Statistics for all reads in the data set 112s 112s 1,873 reads out of 1,873 (100.0%) 112s 20,006,850 base pairs out of 20,006,850 (100.0%) 112s 112s 10,681 average read length 112s 2,159 standard deviation 112s 112s Base composition: 0.250(A) 0.250(C) 0.250(G) 0.250(T) 112s 112s Distribution of Read Lengths (Bin size = 1,000) 112s 112s Bin: Count % Reads % Bases Average 112s 19,000: 2 0.1 0.2 19450 112s 18,000: 5 0.4 0.7 18903 112s 17,000: 9 0.9 1.4 18030 112s 16,000: 15 1.7 2.7 17344 112s 15,000: 42 3.9 5.9 16242 112s 14,000: 79 8.1 11.6 15327 112s 13,000: 110 14.0 19.0 14544 112s 12,000: 178 23.5 30.1 13700 112s 11,000: 287 38.8 46.6 12819 112s 10,000: 390 59.6 67.0 12002 112s 9,000: 350 78.3 83.7 11408 112s 8,000: 251 91.7 94.4 10990 112s 7,000: 114 97.8 98.7 10776 112s 6,000: 35 99.7 99.8 10697 112s 5,000: 6 100.0 100.0 10681 112s files = 1 112s 1873 G Sim 112s blocks = 2 112s size = 11000000 cutoff = 0 all = 0 112s 0 0 112s 1025 1025 112s 1873 1873 112s # Daligner jobs (2) 112s daligner -t5 -mdust G.1 G.@1-1 119s LAmerge: Out of memory (Allocating LAmerge blocks) 119s 119s daligner2.0: Command Failed: 119s LAmerge G.1.G.1.las /tmp/daligner.2200/G.1.G.1.N@.S 119s daligner -t5 -mdust G.2 G.@1-2 129s LAmerge: Out of memory (Allocating LAmerge blocks) 129s 129s daligner2.0: Command Failed: 129s LAmerge G.2.G.1.las /tmp/daligner.2271/G.2.G.1.N@.S 129s # Check initial .las files jobs (2) (optional but recommended) 129s LAcheck -vS G G.1.G.@ 129s LAcheck -vS G G.2.G.@ 129s # Merge jobs (2) 129s LAmerge G.1 G.1.G.@ && LAcheck -vS G G.1 129s LAmerge: Out of memory (Allocating LAmerge blocks) 129s LAmerge G.2 G.2.G.@ && LAcheck -vS G G.2 129s LAmerge: Out of memory (Allocating LAmerge blocks) 129s # Remove block .las files (optional) 129s rm G.1.G.*.las 129s rm: cannot remove 'G.1.G.*.las': No such file or directory 129s rm G.2.G.*.las 129s rm: cannot remove 'G.2.G.*.las': No such file or directory 130s autopkgtest [06:58:02]: test run-unit-test: -----------------------] 130s run-unit-test FAIL non-zero exit status 1 130s autopkgtest [06:58:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 131s autopkgtest [06:58:03]: @@@@@@@@@@@@@@@@@@@@ summary 131s run-unit-test FAIL non-zero exit status 1 143s Creating nova instance adt-oracular-ppc64el-daligner-20240529-065552-juju-7f2275-prod-proposed-migration-environment-3-36170e59-7204-4705-9386-09e4e2759992 from image adt/ubuntu-oracular-ppc64el-server-20240528.img (UUID 0c801691-adf3-4066-841d-d887bf6e372c)...