5s autopkgtest [15:25:04]: starting date and time: 2024-07-12 15:25:04+0000 10s autopkgtest [15:25:09]: git checkout: fd3bed09 nova: allow more retries for quota issues 10s autopkgtest [15:25:09]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.slot6_dk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-25.secgroup --name adt-oracular-ppc64el-cyvcf2-20240712-152457-juju-7f2275-prod-proposed-migration-environment-3-d2f36efa-50ae-4532-b5f7-649c1536ecfb --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 163s autopkgtest [15:27:42]: testbed dpkg architecture: ppc64el 164s autopkgtest [15:27:43]: testbed apt version: 2.9.6 164s autopkgtest [15:27:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 165s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 166s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [344 kB] 166s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.3 kB] 166s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 166s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 166s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [74.4 kB] 166s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el c-n-f Metadata [2104 B] 166s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 166s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el c-n-f Metadata [120 B] 166s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [364 kB] 166s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el c-n-f Metadata [8320 B] 166s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1448 B] 166s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el c-n-f Metadata [120 B] 168s Fetched 976 kB in 1s (1312 kB/s) 168s Reading package lists... 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 191s Calculating upgrade... 191s The following packages will be upgraded: 191s binutils binutils-common binutils-powerpc64le-linux-gnu gir1.2-glib-2.0 191s libbinutils libc-bin libc-dev-bin libc-devtools libc6 libc6-dev 191s libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data libnghttp2-14 libnss3 191s libsframe1 libssl3t64 locales openssh-client openssh-server 191s openssh-sftp-server openssl 191s 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 191s Need to get 22.9 MB of archives. 191s After this operation, 1586 kB disk space will be freed. 191s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-devtools ppc64el 2.39-3.1ubuntu3 [29.5 kB] 191s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6-dev ppc64el 2.39-3.1ubuntu3 [1982 kB] 192s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-dev-bin ppc64el 2.39-3.1ubuntu3 [21.0 kB] 192s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6 ppc64el 2.39-3.1ubuntu3 [3174 kB] 192s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-bin ppc64el 2.39-3.1ubuntu3 [720 kB] 192s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libssl3t64 ppc64el 3.2.2-1ubuntu1 [2345 kB] 192s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu17 [43.6 kB] 192s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu17 [624 kB] 192s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu17 [1108 kB] 192s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-glib-2.0 ppc64el 2.80.4-1ubuntu1 [182 kB] 192s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-0t64 ppc64el 2.80.4-1ubuntu1 [1763 kB] 192s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 192s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el locales all 2.39-3.1ubuntu3 [4220 kB] 192s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssl ppc64el 3.2.2-1ubuntu1 [1147 kB] 192s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnghttp2-14 ppc64el 1.62.1-2 [89.3 kB] 192s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf0 ppc64el 2.42.50.20240710-1ubuntu1 [113 kB] 192s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf-nobfd0 ppc64el 2.42.50.20240710-1ubuntu1 [113 kB] 192s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42.50.20240710-1ubuntu1 [2492 kB] 192s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbinutils ppc64el 2.42.50.20240710-1ubuntu1 [702 kB] 192s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils ppc64el 2.42.50.20240710-1ubuntu1 [3092 B] 192s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-common ppc64el 2.42.50.20240710-1ubuntu1 [220 kB] 192s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsframe1 ppc64el 2.42.50.20240710-1ubuntu1 [15.8 kB] 192s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnss3 ppc64el 2:3.102-1 [1748 kB] 193s Preconfiguring packages ... 193s Fetched 22.9 MB in 1s (16.3 MB/s) 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 193s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_ppc64el.deb ... 193s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 193s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_ppc64el.deb ... 193s Unpacking libc6-dev:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 193s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_ppc64el.deb ... 193s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 193s Preparing to unpack .../libc6_2.39-3.1ubuntu3_ppc64el.deb ... 193s Unpacking libc6:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 193s Setting up libc6:ppc64el (2.39-3.1ubuntu3) ... 194s Error: Could not restart systemd, systemd binary not working 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 194s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_ppc64el.deb ... 194s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 194s Setting up libc-bin (2.39-3.1ubuntu3) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 194s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_ppc64el.deb ... 194s Unpacking libssl3t64:ppc64el (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 194s Setting up libssl3t64:ppc64el (3.2.2-1ubuntu1) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 194s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 194s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 194s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 194s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 194s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 194s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 194s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_ppc64el.deb ... 194s Unpacking gir1.2-glib-2.0:ppc64el (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 194s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_ppc64el.deb ... 194s Unpacking libglib2.0-0t64:ppc64el (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 194s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 194s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 194s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 194s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 194s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_ppc64el.deb ... 194s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 194s Preparing to unpack .../08-libnghttp2-14_1.62.1-2_ppc64el.deb ... 194s Unpacking libnghttp2-14:ppc64el (1.62.1-2) over (1.62.1-1) ... 195s Preparing to unpack .../09-libctf0_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking libctf0:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../10-libctf-nobfd0_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking libctf-nobfd0:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../11-binutils-powerpc64le-linux-gnu_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking binutils-powerpc64le-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../12-libbinutils_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking libbinutils:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../13-binutils_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../14-binutils-common_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking binutils-common:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../15-libsframe1_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 195s Unpacking libsframe1:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 195s Preparing to unpack .../16-libnss3_2%3a3.102-1_ppc64el.deb ... 195s Unpacking libnss3:ppc64el (2:3.102-1) over (2:3.101-1) ... 195s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 195s Setting up binutils-common:ppc64el (2.42.50.20240710-1ubuntu1) ... 195s Setting up libnghttp2-14:ppc64el (1.62.1-2) ... 195s Setting up libctf-nobfd0:ppc64el (2.42.50.20240710-1ubuntu1) ... 195s Setting up libnss3:ppc64el (2:3.102-1) ... 195s Setting up locales (2.39-3.1ubuntu3) ... 195s Generating locales (this might take a while)... 197s en_US.UTF-8... done 197s Generation complete. 197s Setting up libsframe1:ppc64el (2.42.50.20240710-1ubuntu1) ... 197s Setting up libglib2.0-0t64:ppc64el (2.80.4-1ubuntu1) ... 197s No schema files found: doing nothing. 197s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 197s Setting up gir1.2-glib-2.0:ppc64el (2.80.4-1ubuntu1) ... 197s Setting up libbinutils:ppc64el (2.42.50.20240710-1ubuntu1) ... 197s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 197s Setting up openssl (3.2.2-1ubuntu1) ... 197s Installing new version of config file /etc/ssl/openssl.cnf ... 197s Setting up libc-devtools (2.39-3.1ubuntu3) ... 197s Setting up libctf0:ppc64el (2.42.50.20240710-1ubuntu1) ... 197s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 197s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 197s Installing new version of config file /etc/pam.d/sshd ... 198s Setting up libc6-dev:ppc64el (2.39-3.1ubuntu3) ... 198s Setting up binutils-powerpc64le-linux-gnu (2.42.50.20240710-1ubuntu1) ... 198s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 198s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 198s Processing triggers for ufw (0.36.2-6) ... 198s Processing triggers for systemd (256-1ubuntu1) ... 199s Processing triggers for man-db (2.12.1-2) ... 207s Reading package lists...Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 207s 207s Building dependency tree... 207s Reading state information... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Calculating upgrade... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 207s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 207s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 207s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 207s Reading package lists... 207s autopkgtest [15:28:22]: rebooting testbed after setup commands that affected boot 289s autopkgtest [15:29:48]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 318s autopkgtest [15:30:17]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 321s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (dsc) [2486 B] 321s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (tar) [420 kB] 321s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (diff) [6696 B] 321s gpgv: Signature made Sat Jun 1 08:34:30 2024 UTC 321s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 321s gpgv: issuer "emollier@debian.org" 321s gpgv: Can't check signature: No public key 321s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.0-1.dsc: no acceptable signature found 321s autopkgtest [15:30:20]: testing package cyvcf2 version 0.31.0-1 334s autopkgtest [15:30:33]: build not needed 350s autopkgtest [15:30:49]: test run-unit-test: preparing testbed 360s Reading package lists... 360s Building dependency tree... 360s Reading state information... 360s Starting pkgProblemResolver with broken count: 0 360s Starting 2 pkgProblemResolver with broken count: 0 360s Done 360s The following additional packages will be installed: 360s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 360s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 360s python3-humanfriendly python3-iniconfig python3-numpy python3-packaging 360s python3-pluggy python3-pytest 360s Suggested packages: 360s gcc gfortran python-numpy-doc python3-dev 360s The following NEW packages will be installed: 360s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 360s python3-all python3-click python3-colorama python3-coloredlogs 360s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 361s python3-packaging python3-pluggy python3-pytest 361s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 361s Need to get 10.2 MB/10.2 MB of archives. 361s After this operation, 44.2 MB of additional disk space will be used. 361s Get:1 /tmp/autopkgtest.z3zr7g/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 361s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 361s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 361s Get:4 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 361s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 361s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 361s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-all ppc64el 3.12.3-0ubuntu1 [888 B] 361s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 361s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-click all 8.1.7-1 [79.1 kB] 361s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-humanfriendly all 10.0-5 [70.5 kB] 361s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 361s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 361s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cyvcf2 ppc64el 0.31.0-1 [876 kB] 362s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 362s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.1-1 [41.4 kB] 362s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 362s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 362s Fetched 10.2 MB in 1s (9720 kB/s) 362s Selecting previously unselected package libblas3:ppc64el. 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 362s Preparing to unpack .../00-libblas3_3.12.0-3build1_ppc64el.deb ... 362s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 362s Selecting previously unselected package libgfortran5:ppc64el. 362s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 362s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 362s Selecting previously unselected package libhtscodecs2:ppc64el. 362s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 362s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 362s Selecting previously unselected package libhts3t64:ppc64el. 362s Preparing to unpack .../03-libhts3t64_1.20+ds-1_ppc64el.deb ... 362s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 362s Selecting previously unselected package liblapack3:ppc64el. 362s Preparing to unpack .../04-liblapack3_3.12.0-3build1_ppc64el.deb ... 362s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 362s Selecting previously unselected package python3-all. 362s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_ppc64el.deb ... 362s Unpacking python3-all (3.12.3-0ubuntu1) ... 362s Selecting previously unselected package python3-colorama. 362s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 362s Unpacking python3-colorama (0.4.6-4) ... 362s Selecting previously unselected package python3-click. 362s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 362s Unpacking python3-click (8.1.7-1) ... 362s Selecting previously unselected package python3-humanfriendly. 362s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 362s Unpacking python3-humanfriendly (10.0-5) ... 362s Selecting previously unselected package python3-coloredlogs. 362s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 362s Unpacking python3-coloredlogs (15.0.1-1) ... 362s Selecting previously unselected package python3-numpy. 362s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 362s Unpacking python3-numpy (1:1.26.4+ds-10) ... 362s Selecting previously unselected package python3-cyvcf2. 362s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_ppc64el.deb ... 362s Unpacking python3-cyvcf2 (0.31.0-1) ... 362s Selecting previously unselected package python3-iniconfig. 362s Preparing to unpack .../12-python3-iniconfig_1.1.1-2_all.deb ... 362s Unpacking python3-iniconfig (1.1.1-2) ... 362s Selecting previously unselected package python3-packaging. 362s Preparing to unpack .../13-python3-packaging_24.1-1_all.deb ... 362s Unpacking python3-packaging (24.1-1) ... 362s Selecting previously unselected package python3-pluggy. 362s Preparing to unpack .../14-python3-pluggy_1.5.0-1_all.deb ... 362s Unpacking python3-pluggy (1.5.0-1) ... 362s Selecting previously unselected package python3-pytest. 362s Preparing to unpack .../15-python3-pytest_7.4.4-1_all.deb ... 362s Unpacking python3-pytest (7.4.4-1) ... 363s Selecting previously unselected package autopkgtest-satdep. 363s Preparing to unpack .../16-1-autopkgtest-satdep.deb ... 363s Unpacking autopkgtest-satdep (0) ... 363s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 363s Setting up python3-iniconfig (1.1.1-2) ... 363s Setting up python3-colorama (0.4.6-4) ... 363s Setting up python3-all (3.12.3-0ubuntu1) ... 363s Setting up python3-click (8.1.7-1) ... 363s Setting up libblas3:ppc64el (3.12.0-3build1) ... 363s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 363s Setting up python3-packaging (24.1-1) ... 363s Setting up python3-humanfriendly (10.0-5) ... 363s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 363s Setting up python3-pluggy (1.5.0-1) ... 363s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 363s Setting up python3-coloredlogs (15.0.1-1) ... 364s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 364s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 364s Setting up python3-pytest (7.4.4-1) ... 364s Setting up python3-numpy (1:1.26.4+ds-10) ... 366s Setting up python3-cyvcf2 (0.31.0-1) ... 366s Setting up autopkgtest-satdep (0) ... 366s Processing triggers for man-db (2.12.1-2) ... 367s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 375s (Reading database ... 74016 files and directories currently installed.) 375s Removing autopkgtest-satdep (0) ... 391s autopkgtest [15:31:30]: test run-unit-test: [----------------------- 392s Testing with python3.12 in /tmp/autopkgtest.z3zr7g/autopkgtest_tmp: 392s ============================= test session starts ============================== 392s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 392s cachedir: .pytest_cache 392s rootdir: /tmp/autopkgtest.z3zr7g/autopkgtest_tmp 392s collecting ... collected 112 items 392s 392s cyvcf2/tests/test_cli.py::test_version PASSED [ 0%] 392s cyvcf2/tests/test_hemi.py::test_hemi PASSED [ 1%] 392s cyvcf2/tests/test_reader.py::test_init PASSED [ 2%] 392s cyvcf2/tests/test_reader.py::test_type PASSED [ 3%] 392s cyvcf2/tests/test_reader.py::test_type_mnp PASSED [ 4%] 392s cyvcf2/tests/test_reader.py::test_format_str PASSED [ 5%] 392s cyvcf2/tests/test_reader.py::test_missing_samples PASSED [ 6%] 392s cyvcf2/tests/test_reader.py::test_ibd PASSED [ 7%] 392s cyvcf2/tests/test_reader.py::test_relatedness PASSED [ 8%] 392s cyvcf2/tests/test_reader.py::test_pls PASSED [ 8%] 392s cyvcf2/tests/test_reader.py::test_gt_alt_freqs PASSED [ 9%] 392s cyvcf2/tests/test_reader.py::test_str PASSED [ 10%] 392s cyvcf2/tests/test_reader.py::test_region PASSED [ 11%] 392s cyvcf2/tests/test_reader.py::test_empty_info PASSED [ 12%] 392s cyvcf2/tests/test_reader.py::test_phases PASSED [ 13%] 392s cyvcf2/tests/test_reader.py::test_bad_init PASSED [ 14%] 392s cyvcf2/tests/test_reader.py::test_samples PASSED [ 15%] 392s cyvcf2/tests/test_reader.py::test_next PASSED [ 16%] 392s cyvcf2/tests/test_reader.py::test_variant PASSED [ 16%] 392s cyvcf2/tests/test_reader.py::test_info_dict PASSED [ 17%] 392s cyvcf2/tests/test_reader.py::test_attrs PASSED [ 18%] 392s cyvcf2/tests/test_reader.py::test_empty PASSED [ 19%] 392s cyvcf2/tests/test_reader.py::test_format_field PASSED [ 20%] 392s cyvcf2/tests/test_reader.py::test_writer_from_string PASSED [ 21%] 392s cyvcf2/tests/test_reader.py::test_isa PASSED [ 22%] 392s cyvcf2/tests/test_reader.py::test_writer PASSED [ 23%] 392s cyvcf2/tests/test_reader.py::test_filters PASSED [ 24%] 392s cyvcf2/tests/test_reader.py::test_add_info_to_header PASSED [ 25%] 392s cyvcf2/tests/test_reader.py::test_read_flag PASSED [ 25%] 392s cyvcf2/tests/test_reader.py::test_add_flag PASSED [ 26%] 392s cyvcf2/tests/test_reader.py::test_issue198 PASSED [ 27%] 392s cyvcf2/tests/test_reader.py::test_constants PASSED [ 28%] 392s cyvcf2/tests/test_reader.py::test_add_filter_to_header PASSED [ 29%] 392s cyvcf2/tests/test_reader.py::test_seqnames PASSED [ 30%] 392s cyvcf2/tests/test_reader.py::test_different_index PASSED [ 31%] 392s cyvcf2/tests/test_reader.py::test_var_type PASSED [ 32%] 392s cyvcf2/tests/test_reader.py::test_header_info PASSED [ 33%] 392s cyvcf2/tests/test_reader.py::test_snpeff_header PASSED [ 33%] 393s cyvcf2/tests/test_reader.py::test_gt_types PASSED [ 34%] 393s cyvcf2/tests/test_reader.py::test_raw_header PASSED [ 35%] 393s cyvcf2/tests/test_reader.py::test_iterate PASSED [ 36%] 393s cyvcf2/tests/test_reader.py::test_empty_call PASSED [ 37%] 393s cyvcf2/tests/test_reader.py::test_haploid PASSED [ 38%] 393s cyvcf2/tests/test_reader.py::test_diploid PASSED [ 39%] 393s cyvcf2/tests/test_reader.py::test_format PASSED [ 40%] 393s cyvcf2/tests/test_reader.py::test_header_stuff PASSED [ 41%] 393s cyvcf2/tests/test_reader.py::test_bcf PASSED [ 41%] 393s cyvcf2/tests/test_reader.py::test_vcf_no_intervals PASSED [ 42%] 393s cyvcf2/tests/test_reader.py::test_issue12 PASSED [ 43%] 393s cyvcf2/tests/test_reader.py::test_gt_bases_nondiploid PASSED [ 44%] 393s cyvcf2/tests/test_reader.py::test_set_format_float PASSED [ 45%] 393s cyvcf2/tests/test_reader.py::test_set_format_int_a PASSED [ 46%] 393s cyvcf2/tests/test_reader.py::test_set_format_int_b PASSED [ 47%] 393s cyvcf2/tests/test_reader.py::test_set_format_int_c PASSED [ 48%] 393s cyvcf2/tests/test_reader.py::test_set_format_int3 PASSED [ 49%] 393s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_second_longer PASSED [ 50%] 393s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_first_longer PASSED [ 50%] 393s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_number3 PASSED [ 51%] 393s cyvcf2/tests/test_reader.py::test_set_gts PASSED [ 52%] 393s cyvcf2/tests/test_reader.py::test_info_del PASSED [ 53%] 393s cyvcf2/tests/test_reader.py::test_filter_id PASSED [ 54%] 393s cyvcf2/tests/test_reader.py::test_access_gts PASSED [ 55%] 393s cyvcf2/tests/test_reader.py::test_access_genotype PASSED [ 56%] 393s cyvcf2/tests/test_reader.py::test_access_genotype_array PASSED [ 57%] 393s cyvcf2/tests/test_reader.py::test_alt_homozygous_gt PASSED [ 58%] 393s cyvcf2/tests/test_reader.py::test_write_missing_contig PASSED [ 58%] 393s cyvcf2/tests/test_reader.py::test_set_samples PASSED [ 59%] 393s cyvcf2/tests/test_reader.py::test_hrec PASSED [ 60%] 393s cyvcf2/tests/test_reader.py::test_issue44 PASSED [ 61%] 393s cyvcf2/tests/test_reader.py::test_id_field_updates PASSED [ 62%] 393s cyvcf2/tests/test_reader.py::test_set_pos PASSED [ 63%] 393s cyvcf2/tests/test_reader.py::test_set_chrom_when_contig_not_in_header PASSED [ 64%] 393s cyvcf2/tests/test_reader.py::test_set_chrom_after_contig_is_added_to_header PASSED [ 65%] 393s cyvcf2/tests/test_reader.py::test_set_qual PASSED [ 66%] 393s cyvcf2/tests/test_reader.py::test_strict_gt_option_flag PASSED [ 66%] 393s cyvcf2/tests/test_reader.py::test_alt_repr PASSED [ 67%] 393s cyvcf2/tests/test_reader.py::test_closed_iter PASSED [ 68%] 393s cyvcf2/tests/test_reader.py::test_issue72 PASSED [ 69%] 393s cyvcf2/tests/test_reader.py::test_is_transition PASSED [ 70%] 393s cyvcf2/tests/test_reader.py::test_decomposed PASSED [ 71%] 393s cyvcf2/tests/test_reader.py::test_fd PASSED [ 72%] 393s cyvcf2/tests/test_reader.py::test_set_reference PASSED [ 73%] 393s cyvcf2/tests/test_reader.py::test_set_alternates PASSED [ 74%] 393s cyvcf2/tests/test_reader.py::test_no_seqlen PASSED [ 75%] 393s cyvcf2/tests/test_reader.py::test_set_unknown_format PASSED [ 75%] 393s cyvcf2/tests/test_reader.py::test_invalid_header PASSED [ 76%] 393s cyvcf2/tests/test_reader.py::test_genotypes PASSED [ 77%] 393s cyvcf2/tests/test_reader.py::test_issue236 PASSED [ 78%] 393s cyvcf2/tests/test_reader.py::test_issue17_no_gt PASSED [ 79%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.vcf.gz] PASSED [ 80%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-multiallelic-homozygous-alt.vcf.gz] PASSED [ 81%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz0] PASSED [ 82%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz1] PASSED [ 83%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.vcf.gz] PASSED [ 83%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.bcf] PASSED [ 84%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.snpeff.bcf] PASSED [ 85%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[csi] PASSED [ 86%] 393s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[tbi] PASSED [ 87%] 393s cyvcf2/tests/test_reader.py::test_num_records_set_index_multiple_times PASSED [ 88%] 393s cyvcf2/tests/test_reader.py::test_num_records_set_wrong_index PASSED [ 89%] 393s cyvcf2/tests/test_reader.py::test_num_records_no_index[test-genotypes.vcf] PASSED [ 90%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithVcfFname_returnsUncompressedVcf PASSED [ 91%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFname_returnsCompressedBcf PASSED [ 91%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf PASSED [ 92%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedBcfFname_returnsCompressedBcf PASSED [ 93%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedVcfFname_returnsCompressedVcf PASSED [ 94%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithStdOut_returnsUncompressedVcf PASSED [ 95%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithNonVcfName_returnsUncompressedVcf PASSED [ 96%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithIntFname_returnsUncompressedVcf PASSED [ 97%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithHandle_returnsUncompressedVcf PASSED [ 98%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithPosixPath_returnsUncompressedVcf PASSED [ 99%] 393s cyvcf2/tests/test_writer.py::TestFileModeInference::test_explicitMode_doesNotInferFromFname PASSED [100%] 393s 393s ============================= 112 passed in 1.21s ============================== 393s autopkgtest [15:31:32]: test run-unit-test: -----------------------] 394s run-unit-test PASS 394s autopkgtest [15:31:33]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 397s autopkgtest [15:31:36]: test autodep8-python3: preparing testbed 607s autopkgtest [15:35:06]: testbed dpkg architecture: ppc64el 608s autopkgtest [15:35:07]: testbed apt version: 2.9.6 608s autopkgtest [15:35:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 612s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 612s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.3 kB] 612s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 612s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 612s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [344 kB] 612s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [74.4 kB] 612s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el c-n-f Metadata [2104 B] 612s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1368 B] 612s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el c-n-f Metadata [120 B] 612s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [364 kB] 612s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el c-n-f Metadata [8320 B] 612s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1448 B] 612s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el c-n-f Metadata [120 B] 614s Fetched 976 kB in 1s (1278 kB/s) 614s Reading package lists... 623s Reading package lists... 623s Building dependency tree... 623s Reading state information... 623s Calculating upgrade... 623s The following packages will be upgraded: 623s binutils binutils-common binutils-powerpc64le-linux-gnu gir1.2-glib-2.0 623s libbinutils libc-bin libc-dev-bin libc-devtools libc6 libc6-dev 623s libctf-nobfd0 libctf0 libglib2.0-0t64 libglib2.0-data libnghttp2-14 libnss3 623s libsframe1 libssl3t64 locales openssh-client openssh-server 623s openssh-sftp-server openssl 623s 23 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 623s Need to get 22.9 MB of archives. 623s After this operation, 1586 kB disk space will be freed. 623s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-devtools ppc64el 2.39-3.1ubuntu3 [29.5 kB] 624s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6-dev ppc64el 2.39-3.1ubuntu3 [1982 kB] 624s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-dev-bin ppc64el 2.39-3.1ubuntu3 [21.0 kB] 624s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc6 ppc64el 2.39-3.1ubuntu3 [3174 kB] 624s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el libc-bin ppc64el 2.39-3.1ubuntu3 [720 kB] 624s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libssl3t64 ppc64el 3.2.2-1ubuntu1 [2345 kB] 624s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu17 [43.6 kB] 624s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu17 [624 kB] 624s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu17 [1108 kB] 624s Get:10 http://ftpmaster.internal/ubuntu oracular/main ppc64el gir1.2-glib-2.0 ppc64el 2.80.4-1ubuntu1 [182 kB] 624s Get:11 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-0t64 ppc64el 2.80.4-1ubuntu1 [1763 kB] 624s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el libglib2.0-data all 2.80.4-1ubuntu1 [49.3 kB] 624s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el locales all 2.39-3.1ubuntu3 [4220 kB] 624s Get:14 http://ftpmaster.internal/ubuntu oracular/main ppc64el openssl ppc64el 3.2.2-1ubuntu1 [1147 kB] 624s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnghttp2-14 ppc64el 1.62.1-2 [89.3 kB] 624s Get:16 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf0 ppc64el 2.42.50.20240710-1ubuntu1 [113 kB] 624s Get:17 http://ftpmaster.internal/ubuntu oracular/main ppc64el libctf-nobfd0 ppc64el 2.42.50.20240710-1ubuntu1 [113 kB] 624s Get:18 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42.50.20240710-1ubuntu1 [2492 kB] 624s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libbinutils ppc64el 2.42.50.20240710-1ubuntu1 [702 kB] 624s Get:20 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils ppc64el 2.42.50.20240710-1ubuntu1 [3092 B] 624s Get:21 http://ftpmaster.internal/ubuntu oracular/main ppc64el binutils-common ppc64el 2.42.50.20240710-1ubuntu1 [220 kB] 624s Get:22 http://ftpmaster.internal/ubuntu oracular/main ppc64el libsframe1 ppc64el 2.42.50.20240710-1ubuntu1 [15.8 kB] 624s Get:23 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnss3 ppc64el 2:3.102-1 [1748 kB] 625s Preconfiguring packages ... 625s Fetched 22.9 MB in 1s (19.5 MB/s) 625s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 625s Preparing to unpack .../libc-devtools_2.39-3.1ubuntu3_ppc64el.deb ... 625s Unpacking libc-devtools (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 625s Preparing to unpack .../libc6-dev_2.39-3.1ubuntu3_ppc64el.deb ... 625s Unpacking libc6-dev:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 625s Preparing to unpack .../libc-dev-bin_2.39-3.1ubuntu3_ppc64el.deb ... 625s Unpacking libc-dev-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 625s Preparing to unpack .../libc6_2.39-3.1ubuntu3_ppc64el.deb ... 625s Unpacking libc6:ppc64el (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 625s Setting up libc6:ppc64el (2.39-3.1ubuntu3) ... 626s Error: Could not restart systemd, systemd binary not working 626s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 626s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_ppc64el.deb ... 626s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 626s Setting up libc-bin (2.39-3.1ubuntu3) ... 626s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 626s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_ppc64el.deb ... 626s Unpacking libssl3t64:ppc64el (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 626s Setting up libssl3t64:ppc64el (3.2.2-1ubuntu1) ... 626s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72755 files and directories currently installed.) 626s Preparing to unpack .../00-openssh-sftp-server_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 626s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 626s Preparing to unpack .../01-openssh-server_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 626s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 626s Preparing to unpack .../02-openssh-client_1%3a9.6p1-3ubuntu17_ppc64el.deb ... 626s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 626s Preparing to unpack .../03-gir1.2-glib-2.0_2.80.4-1ubuntu1_ppc64el.deb ... 626s Unpacking gir1.2-glib-2.0:ppc64el (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 626s Preparing to unpack .../04-libglib2.0-0t64_2.80.4-1ubuntu1_ppc64el.deb ... 626s Unpacking libglib2.0-0t64:ppc64el (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 626s Preparing to unpack .../05-libglib2.0-data_2.80.4-1ubuntu1_all.deb ... 626s Unpacking libglib2.0-data (2.80.4-1ubuntu1) over (2.80.3-1ubuntu1) ... 626s Preparing to unpack .../06-locales_2.39-3.1ubuntu3_all.deb ... 626s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 626s Preparing to unpack .../07-openssl_3.2.2-1ubuntu1_ppc64el.deb ... 626s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 626s Preparing to unpack .../08-libnghttp2-14_1.62.1-2_ppc64el.deb ... 626s Unpacking libnghttp2-14:ppc64el (1.62.1-2) over (1.62.1-1) ... 626s Preparing to unpack .../09-libctf0_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 626s Unpacking libctf0:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 626s Preparing to unpack .../10-libctf-nobfd0_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 626s Unpacking libctf-nobfd0:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 626s Preparing to unpack .../11-binutils-powerpc64le-linux-gnu_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 626s Unpacking binutils-powerpc64le-linux-gnu (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 627s Preparing to unpack .../12-libbinutils_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 627s Unpacking libbinutils:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 627s Preparing to unpack .../13-binutils_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 627s Unpacking binutils (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 627s Preparing to unpack .../14-binutils-common_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 627s Unpacking binutils-common:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 627s Preparing to unpack .../15-libsframe1_2.42.50.20240710-1ubuntu1_ppc64el.deb ... 627s Unpacking libsframe1:ppc64el (2.42.50.20240710-1ubuntu1) over (2.42.50.20240625-1ubuntu1) ... 627s Preparing to unpack .../16-libnss3_2%3a3.102-1_ppc64el.deb ... 627s Unpacking libnss3:ppc64el (2:3.102-1) over (2:3.101-1) ... 627s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 627s Setting up binutils-common:ppc64el (2.42.50.20240710-1ubuntu1) ... 627s Setting up libnghttp2-14:ppc64el (1.62.1-2) ... 627s Setting up libctf-nobfd0:ppc64el (2.42.50.20240710-1ubuntu1) ... 627s Setting up libnss3:ppc64el (2:3.102-1) ... 627s Setting up locales (2.39-3.1ubuntu3) ... 627s Generating locales (this might take a while)... 629s en_US.UTF-8... done 629s Generation complete. 629s Setting up libsframe1:ppc64el (2.42.50.20240710-1ubuntu1) ... 629s Setting up libglib2.0-0t64:ppc64el (2.80.4-1ubuntu1) ... 629s No schema files found: doing nothing. 629s Setting up libglib2.0-data (2.80.4-1ubuntu1) ... 629s Setting up gir1.2-glib-2.0:ppc64el (2.80.4-1ubuntu1) ... 629s Setting up libbinutils:ppc64el (2.42.50.20240710-1ubuntu1) ... 629s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 629s Setting up openssl (3.2.2-1ubuntu1) ... 629s Installing new version of config file /etc/ssl/openssl.cnf ... 629s Setting up libc-devtools (2.39-3.1ubuntu3) ... 629s Setting up libctf0:ppc64el (2.42.50.20240710-1ubuntu1) ... 629s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 629s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 629s Installing new version of config file /etc/pam.d/sshd ... 630s Setting up libc6-dev:ppc64el (2.39-3.1ubuntu3) ... 630s Setting up binutils-powerpc64le-linux-gnu (2.42.50.20240710-1ubuntu1) ... 630s Setting up binutils (2.42.50.20240710-1ubuntu1) ... 630s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 630s Processing triggers for ufw (0.36.2-6) ... 630s Processing triggers for systemd (256-1ubuntu1) ... 631s Processing triggers for man-db (2.12.1-2) ... 632s Reading package lists... 632s Building dependency tree... 632s Reading state information... 632s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 633s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 633s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 633s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 633s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 634s Reading package lists... 634s Reading package lists... 634s Building dependency tree... 634s Reading state information... 634s Calculating upgrade... 634s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 634s Reading package lists... 634s Building dependency tree... 634s Reading state information... 634s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 635s autopkgtest [15:35:34]: rebooting testbed after setup commands that affected boot 639s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 672s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 718s Reading package lists... 719s Building dependency tree... 719s Reading state information... 719s Starting pkgProblemResolver with broken count: 0 719s Starting 2 pkgProblemResolver with broken count: 0 719s Done 719s The following additional packages will be installed: 719s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 719s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 719s python3-humanfriendly python3-numpy 719s Suggested packages: 719s gcc gfortran python-numpy-doc python3-dev python3-pytest 719s The following NEW packages will be installed: 719s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 719s python3-all python3-click python3-colorama python3-coloredlogs 719s python3-cyvcf2 python3-humanfriendly python3-numpy 719s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 719s Need to get 9787 kB/9787 kB of archives. 719s After this operation, 42.6 MB of additional disk space will be used. 719s Get:1 /tmp/autopkgtest.z3zr7g/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 719s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 719s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 720s Get:4 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 720s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 720s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 720s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-all ppc64el 3.12.3-0ubuntu1 [888 B] 720s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 720s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-click all 8.1.7-1 [79.1 kB] 720s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-humanfriendly all 10.0-5 [70.5 kB] 720s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 720s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 720s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cyvcf2 ppc64el 0.31.0-1 [876 kB] 720s Fetched 9787 kB in 1s (10.9 MB/s) 720s Selecting previously unselected package libblas3:ppc64el. 720s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72754 files and directories currently installed.) 720s Preparing to unpack .../00-libblas3_3.12.0-3build1_ppc64el.deb ... 720s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 720s Selecting previously unselected package libgfortran5:ppc64el. 720s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 720s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 720s Selecting previously unselected package libhtscodecs2:ppc64el. 720s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 720s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 720s Selecting previously unselected package libhts3t64:ppc64el. 720s Preparing to unpack .../03-libhts3t64_1.20+ds-1_ppc64el.deb ... 720s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 720s Selecting previously unselected package liblapack3:ppc64el. 720s Preparing to unpack .../04-liblapack3_3.12.0-3build1_ppc64el.deb ... 720s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 720s Selecting previously unselected package python3-all. 720s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_ppc64el.deb ... 720s Unpacking python3-all (3.12.3-0ubuntu1) ... 720s Selecting previously unselected package python3-colorama. 720s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 720s Unpacking python3-colorama (0.4.6-4) ... 720s Selecting previously unselected package python3-click. 720s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 720s Unpacking python3-click (8.1.7-1) ... 720s Selecting previously unselected package python3-humanfriendly. 720s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 720s Unpacking python3-humanfriendly (10.0-5) ... 720s Selecting previously unselected package python3-coloredlogs. 721s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 721s Unpacking python3-coloredlogs (15.0.1-1) ... 721s Selecting previously unselected package python3-numpy. 721s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 721s Unpacking python3-numpy (1:1.26.4+ds-10) ... 721s Selecting previously unselected package python3-cyvcf2. 721s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_ppc64el.deb ... 721s Unpacking python3-cyvcf2 (0.31.0-1) ... 721s Selecting previously unselected package autopkgtest-satdep. 721s Preparing to unpack .../12-2-autopkgtest-satdep.deb ... 721s Unpacking autopkgtest-satdep (0) ... 721s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 721s Setting up python3-colorama (0.4.6-4) ... 721s Setting up python3-all (3.12.3-0ubuntu1) ... 721s Setting up python3-click (8.1.7-1) ... 721s Setting up libblas3:ppc64el (3.12.0-3build1) ... 721s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 721s Setting up python3-humanfriendly (10.0-5) ... 721s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 721s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 721s Setting up python3-coloredlogs (15.0.1-1) ... 722s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 722s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 722s Setting up python3-numpy (1:1.26.4+ds-10) ... 724s Setting up python3-cyvcf2 (0.31.0-1) ... 724s Setting up autopkgtest-satdep (0) ... 724s Processing triggers for man-db (2.12.1-2) ... 725s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 728s (Reading database ... 73852 files and directories currently installed.) 728s Removing autopkgtest-satdep (0) ... 735s autopkgtest [15:37:14]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 735s autopkgtest [15:37:14]: test autodep8-python3: [----------------------- 737s Testing with python3.12: 737s 737s autopkgtest [15:37:16]: test autodep8-python3: -----------------------] 738s autopkgtest [15:37:17]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 738s autodep8-python3 PASS (superficial) 738s autopkgtest [15:37:17]: @@@@@@@@@@@@@@@@@@@@ summary 738s run-unit-test PASS 738s autodep8-python3 PASS (superficial) 752s nova [W] Using flock in scalingstack-bos02-ppc64el 752s Creating nova instance adt-oracular-ppc64el-cyvcf2-20240712-152457-juju-7f2275-prod-proposed-migration-environment-3-d2f36efa-50ae-4532-b5f7-649c1536ecfb from image adt/ubuntu-oracular-ppc64el-server-20240711.img (UUID 9c30bb8c-2214-40db-9e25-a03aa1f5d53f)... 752s nova [W] Using flock in scalingstack-bos02-ppc64el 752s Creating nova instance adt-oracular-ppc64el-cyvcf2-20240712-152457-juju-7f2275-prod-proposed-migration-environment-3-d2f36efa-50ae-4532-b5f7-649c1536ecfb from image adt/ubuntu-oracular-ppc64el-server-20240711.img (UUID 9c30bb8c-2214-40db-9e25-a03aa1f5d53f)...