0s autopkgtest [00:38:47]: starting date and time: 2024-06-08 00:38:47+0000 0s autopkgtest [00:38:47]: git checkout: 433ed4cb Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [00:38:47]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.njtjbeox/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-8.secgroup --name adt-oracular-ppc64el-cyvcf2-20240608-003847-juju-7f2275-prod-proposed-migration-environment-3-9b71202b-3069-4bf6-8dcc-ec14ae2cf5b9 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 121s autopkgtest [00:40:48]: testbed dpkg architecture: ppc64el 121s autopkgtest [00:40:48]: testbed apt version: 2.9.3 121s autopkgtest [00:40:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 122s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2852 B] 123s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 123s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 123s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 123s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [53.6 kB] 123s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1860 B] 123s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [289 kB] 123s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1768 B] 123s Fetched 850 kB in 1s (1050 kB/s) 123s Reading package lists... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Calculating upgrade... 126s The following packages will be upgraded: 126s debianutils libheif-plugin-aomdec libheif-plugin-aomenc 126s libheif-plugin-libde265 libheif1 libnetplan1 netplan-generator netplan.io 126s python3-netplan 126s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 731 kB of archives. 126s After this operation, 5120 B of additional disk space will be used. 126s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el debianutils ppc64el 5.18 [90.5 kB] 127s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan-generator ppc64el 1.0-3ubuntu1 [59.3 kB] 127s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-netplan ppc64el 1.0-3ubuntu1 [21.8 kB] 127s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan.io ppc64el 1.0-3ubuntu1 [66.6 kB] 127s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnetplan1 ppc64el 1.0-3ubuntu1 [138 kB] 127s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomdec ppc64el 1.17.6-3 [10.2 kB] 127s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomenc ppc64el 1.17.6-3 [16.6 kB] 127s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif1 ppc64el 1.17.6-3 [320 kB] 127s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-libde265 ppc64el 1.17.6-3 [8484 B] 127s Fetched 731 kB in 1s (1131 kB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 127s Preparing to unpack .../debianutils_5.18_ppc64el.deb ... 127s Unpacking debianutils (5.18) over (5.17build1) ... 127s Setting up debianutils (5.18) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 127s Preparing to unpack .../0-netplan-generator_1.0-3ubuntu1_ppc64el.deb ... 127s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 127s Unpacking netplan-generator (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 127s Preparing to unpack .../1-python3-netplan_1.0-3ubuntu1_ppc64el.deb ... 127s Unpacking python3-netplan (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 127s Preparing to unpack .../2-netplan.io_1.0-3ubuntu1_ppc64el.deb ... 127s Unpacking netplan.io (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 127s Preparing to unpack .../3-libnetplan1_1.0-3ubuntu1_ppc64el.deb ... 127s Unpacking libnetplan1:ppc64el (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 128s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-3_ppc64el.deb ... 128s Unpacking libheif-plugin-aomdec:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-3_ppc64el.deb ... 128s Unpacking libheif-plugin-aomenc:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../6-libheif1_1.17.6-3_ppc64el.deb ... 128s Unpacking libheif1:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-3_ppc64el.deb ... 128s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 128s Setting up libnetplan1:ppc64el (1.0-3ubuntu1) ... 128s Setting up python3-netplan (1.0-3ubuntu1) ... 128s Setting up netplan-generator (1.0-3ubuntu1) ... 128s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 128s Setting up netplan.io (1.0-3ubuntu1) ... 128s Setting up libheif-plugin-aomdec:ppc64el (1.17.6-3) ... 128s Setting up libheif-plugin-libde265:ppc64el (1.17.6-3) ... 128s Setting up libheif1:ppc64el (1.17.6-3) ... 128s Setting up libheif-plugin-aomenc:ppc64el (1.17.6-3) ... 128s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 128s Processing triggers for man-db (2.12.1-1) ... 129s Processing triggers for dbus (1.14.10-4ubuntu4) ... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 130s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 130s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 130s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 131s Reading package lists... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 135s autopkgtest [00:41:02]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 135s autopkgtest [00:41:02]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 137s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (dsc) [2486 B] 137s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (tar) [420 kB] 137s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cyvcf2 0.31.0-1 (diff) [6696 B] 137s gpgv: Signature made Sat Jun 1 08:34:30 2024 UTC 137s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 137s gpgv: issuer "emollier@debian.org" 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.31.0-1.dsc: no acceptable signature found 137s autopkgtest [00:41:04]: testing package cyvcf2 version 0.31.0-1 138s autopkgtest [00:41:05]: build not needed 138s autopkgtest [00:41:05]: test run-unit-test: preparing testbed 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 140s The following additional packages will be installed: 140s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 140s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 140s python3-humanfriendly python3-iniconfig python3-numpy python3-packaging 140s python3-pluggy python3-pytest 140s Suggested packages: 140s gcc gfortran python-numpy-doc python3-dev 140s The following NEW packages will be installed: 140s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 140s python3-all python3-click python3-colorama python3-coloredlogs 140s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 140s python3-packaging python3-pluggy python3-pytest 140s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 10.1 MB/10.1 MB of archives. 140s After this operation, 44.2 MB of additional disk space will be used. 140s Get:1 /tmp/autopkgtest.IbkTLh/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 140s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 141s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 141s Get:4 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 141s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 141s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 141s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-all ppc64el 3.12.3-0ubuntu1 [888 B] 141s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 141s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-click all 8.1.7-1 [79.1 kB] 141s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-humanfriendly all 10.0-5 [70.5 kB] 141s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 141s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 141s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cyvcf2 ppc64el 0.31.0-1 [876 kB] 141s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 141s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 141s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.5.0-1 [21.0 kB] 141s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-pytest all 8.2.2-1ubuntu1 [250 kB] 141s Fetched 10.1 MB in 1s (10.6 MB/s) 141s Selecting previously unselected package libblas3:ppc64el. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 141s Preparing to unpack .../00-libblas3_3.12.0-3build1_ppc64el.deb ... 141s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 141s Selecting previously unselected package libgfortran5:ppc64el. 142s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 142s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 142s Selecting previously unselected package libhtscodecs2:ppc64el. 142s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 142s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 142s Selecting previously unselected package libhts3t64:ppc64el. 142s Preparing to unpack .../03-libhts3t64_1.20+ds-1_ppc64el.deb ... 142s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 142s Selecting previously unselected package liblapack3:ppc64el. 142s Preparing to unpack .../04-liblapack3_3.12.0-3build1_ppc64el.deb ... 142s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 142s Selecting previously unselected package python3-all. 142s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_ppc64el.deb ... 142s Unpacking python3-all (3.12.3-0ubuntu1) ... 142s Selecting previously unselected package python3-colorama. 142s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 142s Unpacking python3-colorama (0.4.6-4) ... 142s Selecting previously unselected package python3-click. 142s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 142s Unpacking python3-click (8.1.7-1) ... 142s Selecting previously unselected package python3-humanfriendly. 142s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 142s Unpacking python3-humanfriendly (10.0-5) ... 142s Selecting previously unselected package python3-coloredlogs. 142s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 142s Unpacking python3-coloredlogs (15.0.1-1) ... 142s Selecting previously unselected package python3-numpy. 142s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 142s Unpacking python3-numpy (1:1.26.4+ds-10) ... 142s Selecting previously unselected package python3-cyvcf2. 142s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_ppc64el.deb ... 142s Unpacking python3-cyvcf2 (0.31.0-1) ... 142s Selecting previously unselected package python3-iniconfig. 142s Preparing to unpack .../12-python3-iniconfig_1.1.1-2_all.deb ... 142s Unpacking python3-iniconfig (1.1.1-2) ... 142s Selecting previously unselected package python3-packaging. 142s Preparing to unpack .../13-python3-packaging_24.0-1_all.deb ... 142s Unpacking python3-packaging (24.0-1) ... 142s Selecting previously unselected package python3-pluggy. 142s Preparing to unpack .../14-python3-pluggy_1.5.0-1_all.deb ... 142s Unpacking python3-pluggy (1.5.0-1) ... 142s Selecting previously unselected package python3-pytest. 142s Preparing to unpack .../15-python3-pytest_8.2.2-1ubuntu1_all.deb ... 142s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 142s Selecting previously unselected package autopkgtest-satdep. 142s Preparing to unpack .../16-1-autopkgtest-satdep.deb ... 142s Unpacking autopkgtest-satdep (0) ... 142s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 142s Setting up python3-iniconfig (1.1.1-2) ... 142s Setting up python3-colorama (0.4.6-4) ... 143s Setting up python3-all (3.12.3-0ubuntu1) ... 143s Setting up python3-click (8.1.7-1) ... 143s Setting up libblas3:ppc64el (3.12.0-3build1) ... 143s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 143s Setting up python3-packaging (24.0-1) ... 143s Setting up python3-humanfriendly (10.0-5) ... 143s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 143s Setting up python3-pluggy (1.5.0-1) ... 143s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 143s Setting up python3-coloredlogs (15.0.1-1) ... 143s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 143s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 143s Setting up python3-pytest (8.2.2-1ubuntu1) ... 144s Setting up python3-numpy (1:1.26.4+ds-10) ... 146s Setting up python3-cyvcf2 (0.31.0-1) ... 147s Setting up autopkgtest-satdep (0) ... 147s Processing triggers for man-db (2.12.1-1) ... 147s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 149s (Reading database ... 73864 files and directories currently installed.) 149s Removing autopkgtest-satdep (0) ... 150s autopkgtest [00:41:17]: test run-unit-test: [----------------------- 150s Testing with python3.12 in /tmp/autopkgtest.IbkTLh/autopkgtest_tmp: 150s ============================= test session starts ============================== 150s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 -- /usr/bin/python3.12 150s cachedir: .pytest_cache 150s rootdir: /tmp/autopkgtest.IbkTLh/autopkgtest_tmp 151s collecting ... collected 112 items 151s 151s cyvcf2/tests/test_cli.py::test_version PASSED [ 0%] 151s cyvcf2/tests/test_hemi.py::test_hemi PASSED [ 1%] 151s cyvcf2/tests/test_reader.py::test_init PASSED [ 2%] 151s cyvcf2/tests/test_reader.py::test_type PASSED [ 3%] 151s cyvcf2/tests/test_reader.py::test_type_mnp PASSED [ 4%] 151s cyvcf2/tests/test_reader.py::test_format_str PASSED [ 5%] 151s cyvcf2/tests/test_reader.py::test_missing_samples PASSED [ 6%] 151s cyvcf2/tests/test_reader.py::test_ibd PASSED [ 7%] 151s cyvcf2/tests/test_reader.py::test_relatedness PASSED [ 8%] 151s cyvcf2/tests/test_reader.py::test_pls PASSED [ 8%] 151s cyvcf2/tests/test_reader.py::test_gt_alt_freqs PASSED [ 9%] 151s cyvcf2/tests/test_reader.py::test_str PASSED [ 10%] 151s cyvcf2/tests/test_reader.py::test_region PASSED [ 11%] 151s cyvcf2/tests/test_reader.py::test_empty_info PASSED [ 12%] 151s cyvcf2/tests/test_reader.py::test_phases PASSED [ 13%] 151s cyvcf2/tests/test_reader.py::test_bad_init PASSED [ 14%] 151s cyvcf2/tests/test_reader.py::test_samples PASSED [ 15%] 151s cyvcf2/tests/test_reader.py::test_next PASSED [ 16%] 151s cyvcf2/tests/test_reader.py::test_variant PASSED [ 16%] 151s cyvcf2/tests/test_reader.py::test_info_dict PASSED [ 17%] 151s cyvcf2/tests/test_reader.py::test_attrs PASSED [ 18%] 151s cyvcf2/tests/test_reader.py::test_empty PASSED [ 19%] 151s cyvcf2/tests/test_reader.py::test_format_field PASSED [ 20%] 151s cyvcf2/tests/test_reader.py::test_writer_from_string PASSED [ 21%] 151s cyvcf2/tests/test_reader.py::test_isa PASSED [ 22%] 151s cyvcf2/tests/test_reader.py::test_writer PASSED [ 23%] 151s cyvcf2/tests/test_reader.py::test_filters PASSED [ 24%] 151s cyvcf2/tests/test_reader.py::test_add_info_to_header PASSED [ 25%] 151s cyvcf2/tests/test_reader.py::test_read_flag PASSED [ 25%] 151s cyvcf2/tests/test_reader.py::test_add_flag PASSED [ 26%] 151s cyvcf2/tests/test_reader.py::test_issue198 PASSED [ 27%] 151s cyvcf2/tests/test_reader.py::test_constants PASSED [ 28%] 151s cyvcf2/tests/test_reader.py::test_add_filter_to_header PASSED [ 29%] 151s cyvcf2/tests/test_reader.py::test_seqnames PASSED [ 30%] 151s cyvcf2/tests/test_reader.py::test_different_index PASSED [ 31%] 151s cyvcf2/tests/test_reader.py::test_var_type PASSED [ 32%] 151s cyvcf2/tests/test_reader.py::test_header_info PASSED [ 33%] 151s cyvcf2/tests/test_reader.py::test_snpeff_header PASSED [ 33%] 152s cyvcf2/tests/test_reader.py::test_gt_types PASSED [ 34%] 152s cyvcf2/tests/test_reader.py::test_raw_header PASSED [ 35%] 152s cyvcf2/tests/test_reader.py::test_iterate PASSED [ 36%] 152s cyvcf2/tests/test_reader.py::test_empty_call PASSED [ 37%] 152s cyvcf2/tests/test_reader.py::test_haploid PASSED [ 38%] 152s cyvcf2/tests/test_reader.py::test_diploid PASSED [ 39%] 152s cyvcf2/tests/test_reader.py::test_format PASSED [ 40%] 152s cyvcf2/tests/test_reader.py::test_header_stuff PASSED [ 41%] 152s cyvcf2/tests/test_reader.py::test_bcf PASSED [ 41%] 152s cyvcf2/tests/test_reader.py::test_vcf_no_intervals PASSED [ 42%] 152s cyvcf2/tests/test_reader.py::test_issue12 PASSED [ 43%] 152s cyvcf2/tests/test_reader.py::test_gt_bases_nondiploid PASSED [ 44%] 152s cyvcf2/tests/test_reader.py::test_set_format_float PASSED [ 45%] 152s cyvcf2/tests/test_reader.py::test_set_format_int_a PASSED [ 46%] 152s cyvcf2/tests/test_reader.py::test_set_format_int_b PASSED [ 47%] 152s cyvcf2/tests/test_reader.py::test_set_format_int_c PASSED [ 48%] 152s cyvcf2/tests/test_reader.py::test_set_format_int3 PASSED [ 49%] 152s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_second_longer PASSED [ 50%] 152s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_first_longer PASSED [ 50%] 152s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_number3 PASSED [ 51%] 152s cyvcf2/tests/test_reader.py::test_set_gts PASSED [ 52%] 152s cyvcf2/tests/test_reader.py::test_info_del PASSED [ 53%] 152s cyvcf2/tests/test_reader.py::test_filter_id PASSED [ 54%] 152s cyvcf2/tests/test_reader.py::test_access_gts PASSED [ 55%] 152s cyvcf2/tests/test_reader.py::test_access_genotype PASSED [ 56%] 152s cyvcf2/tests/test_reader.py::test_access_genotype_array PASSED [ 57%] 152s cyvcf2/tests/test_reader.py::test_alt_homozygous_gt PASSED [ 58%] 152s cyvcf2/tests/test_reader.py::test_write_missing_contig PASSED [ 58%] 152s cyvcf2/tests/test_reader.py::test_set_samples PASSED [ 59%] 152s cyvcf2/tests/test_reader.py::test_hrec PASSED [ 60%] 152s cyvcf2/tests/test_reader.py::test_issue44 PASSED [ 61%] 152s cyvcf2/tests/test_reader.py::test_id_field_updates PASSED [ 62%] 152s cyvcf2/tests/test_reader.py::test_set_pos PASSED [ 63%] 152s cyvcf2/tests/test_reader.py::test_set_chrom_when_contig_not_in_header PASSED [ 64%] 152s cyvcf2/tests/test_reader.py::test_set_chrom_after_contig_is_added_to_header PASSED [ 65%] 152s cyvcf2/tests/test_reader.py::test_set_qual PASSED [ 66%] 152s cyvcf2/tests/test_reader.py::test_strict_gt_option_flag PASSED [ 66%] 152s cyvcf2/tests/test_reader.py::test_alt_repr PASSED [ 67%] 152s cyvcf2/tests/test_reader.py::test_closed_iter PASSED [ 68%] 152s cyvcf2/tests/test_reader.py::test_issue72 PASSED [ 69%] 152s cyvcf2/tests/test_reader.py::test_is_transition PASSED [ 70%] 152s cyvcf2/tests/test_reader.py::test_decomposed PASSED [ 71%] 152s cyvcf2/tests/test_reader.py::test_fd PASSED [ 72%] 152s cyvcf2/tests/test_reader.py::test_set_reference PASSED [ 73%] 152s cyvcf2/tests/test_reader.py::test_set_alternates PASSED [ 74%] 152s cyvcf2/tests/test_reader.py::test_no_seqlen PASSED [ 75%] 152s cyvcf2/tests/test_reader.py::test_set_unknown_format PASSED [ 75%] 152s cyvcf2/tests/test_reader.py::test_invalid_header PASSED [ 76%] 152s cyvcf2/tests/test_reader.py::test_genotypes PASSED [ 77%] 152s cyvcf2/tests/test_reader.py::test_issue236 PASSED [ 78%] 152s cyvcf2/tests/test_reader.py::test_issue17_no_gt PASSED [ 79%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.vcf.gz] PASSED [ 80%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-multiallelic-homozygous-alt.vcf.gz] PASSED [ 81%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz0] PASSED [ 82%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz1] PASSED [ 83%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.vcf.gz] PASSED [ 83%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.bcf] PASSED [ 84%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.snpeff.bcf] PASSED [ 85%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[csi] PASSED [ 86%] 152s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[tbi] PASSED [ 87%] 152s cyvcf2/tests/test_reader.py::test_num_records_set_index_multiple_times PASSED [ 88%] 152s cyvcf2/tests/test_reader.py::test_num_records_set_wrong_index PASSED [ 89%] 152s cyvcf2/tests/test_reader.py::test_num_records_no_index[test-genotypes.vcf] PASSED [ 90%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithVcfFname_returnsUncompressedVcf PASSED [ 91%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFname_returnsCompressedBcf PASSED [ 91%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf PASSED [ 92%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedBcfFname_returnsCompressedBcf PASSED [ 93%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedVcfFname_returnsCompressedVcf PASSED [ 94%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithStdOut_returnsUncompressedVcf PASSED [ 95%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithNonVcfName_returnsUncompressedVcf PASSED [ 96%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithIntFname_returnsUncompressedVcf PASSED [ 97%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithHandle_returnsUncompressedVcf PASSED [ 98%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithPosixPath_returnsUncompressedVcf PASSED [ 99%] 152s cyvcf2/tests/test_writer.py::TestFileModeInference::test_explicitMode_doesNotInferFromFname PASSED [100%] 152s 152s ============================= 112 passed in 1.50s ============================== 152s autopkgtest [00:41:19]: test run-unit-test: -----------------------] 153s autopkgtest [00:41:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 153s run-unit-test PASS 153s autopkgtest [00:41:20]: test autodep8-python3: preparing testbed 304s autopkgtest [00:43:51]: testbed dpkg architecture: ppc64el 304s autopkgtest [00:43:51]: testbed apt version: 2.9.3 304s autopkgtest [00:43:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 305s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 305s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 305s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2852 B] 305s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [339 kB] 305s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 305s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [53.6 kB] 305s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1860 B] 305s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [289 kB] 305s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [1768 B] 306s Fetched 850 kB in 1s (1049 kB/s) 306s Reading package lists... 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s Calculating upgrade... 308s The following packages will be upgraded: 308s debianutils libheif-plugin-aomdec libheif-plugin-aomenc 308s libheif-plugin-libde265 libheif1 libnetplan1 netplan-generator netplan.io 308s python3-netplan 309s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 731 kB of archives. 309s After this operation, 5120 B of additional disk space will be used. 309s Get:1 http://ftpmaster.internal/ubuntu oracular/main ppc64el debianutils ppc64el 5.18 [90.5 kB] 309s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan-generator ppc64el 1.0-3ubuntu1 [59.3 kB] 309s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-netplan ppc64el 1.0-3ubuntu1 [21.8 kB] 309s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el netplan.io ppc64el 1.0-3ubuntu1 [66.6 kB] 309s Get:5 http://ftpmaster.internal/ubuntu oracular/main ppc64el libnetplan1 ppc64el 1.0-3ubuntu1 [138 kB] 309s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomdec ppc64el 1.17.6-3 [10.2 kB] 309s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-aomenc ppc64el 1.17.6-3 [16.6 kB] 309s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif1 ppc64el 1.17.6-3 [320 kB] 309s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el libheif-plugin-libde265 ppc64el 1.17.6-3 [8484 B] 309s Fetched 731 kB in 0s (1478 kB/s) 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 309s Preparing to unpack .../debianutils_5.18_ppc64el.deb ... 309s Unpacking debianutils (5.18) over (5.17build1) ... 309s Setting up debianutils (5.18) ... 310s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 310s Preparing to unpack .../0-netplan-generator_1.0-3ubuntu1_ppc64el.deb ... 310s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 310s Unpacking netplan-generator (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 310s Preparing to unpack .../1-python3-netplan_1.0-3ubuntu1_ppc64el.deb ... 310s Unpacking python3-netplan (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 310s Preparing to unpack .../2-netplan.io_1.0-3ubuntu1_ppc64el.deb ... 310s Unpacking netplan.io (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 310s Preparing to unpack .../3-libnetplan1_1.0-3ubuntu1_ppc64el.deb ... 310s Unpacking libnetplan1:ppc64el (1.0-3ubuntu1) over (1.0-2ubuntu1) ... 310s Preparing to unpack .../4-libheif-plugin-aomdec_1.17.6-3_ppc64el.deb ... 310s Unpacking libheif-plugin-aomdec:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 310s Preparing to unpack .../5-libheif-plugin-aomenc_1.17.6-3_ppc64el.deb ... 310s Unpacking libheif-plugin-aomenc:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 310s Preparing to unpack .../6-libheif1_1.17.6-3_ppc64el.deb ... 310s Unpacking libheif1:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 310s Preparing to unpack .../7-libheif-plugin-libde265_1.17.6-3_ppc64el.deb ... 310s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-3) over (1.17.6-1ubuntu4) ... 310s Setting up libnetplan1:ppc64el (1.0-3ubuntu1) ... 310s Setting up python3-netplan (1.0-3ubuntu1) ... 310s Setting up netplan-generator (1.0-3ubuntu1) ... 310s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 310s Setting up netplan.io (1.0-3ubuntu1) ... 310s Setting up libheif-plugin-aomdec:ppc64el (1.17.6-3) ... 310s Setting up libheif-plugin-libde265:ppc64el (1.17.6-3) ... 310s Setting up libheif1:ppc64el (1.17.6-3) ... 310s Setting up libheif-plugin-aomenc:ppc64el (1.17.6-3) ... 310s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 310s Processing triggers for man-db (2.12.1-1) ... 311s Processing triggers for dbus (1.14.10-4ubuntu4) ... 311s Reading package lists... 311s Building dependency tree... 311s Reading state information... 312s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 312s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 312s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 312s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 312s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 313s Reading package lists... 313s Reading package lists... 314s Building dependency tree... 314s Reading state information... 314s Calculating upgrade... 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 314s Reading package lists... 314s Building dependency tree... 314s Reading state information... 314s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 318s Reading package lists... 318s Building dependency tree... 318s Reading state information... 319s Starting pkgProblemResolver with broken count: 0 319s Starting 2 pkgProblemResolver with broken count: 0 319s Done 319s The following additional packages will be installed: 319s libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 python3-all 319s python3-click python3-colorama python3-coloredlogs python3-cyvcf2 319s python3-humanfriendly python3-numpy 319s Suggested packages: 319s gcc gfortran python-numpy-doc python3-dev python3-pytest 319s The following NEW packages will be installed: 319s autopkgtest-satdep libblas3 libgfortran5 libhts3t64 libhtscodecs2 liblapack3 319s python3-all python3-click python3-colorama python3-coloredlogs 319s python3-cyvcf2 python3-humanfriendly python3-numpy 319s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 319s Need to get 9787 kB/9787 kB of archives. 319s After this operation, 42.6 MB of additional disk space will be used. 319s Get:1 /tmp/autopkgtest.IbkTLh/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 319s Get:2 http://ftpmaster.internal/ubuntu oracular/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 319s Get:3 http://ftpmaster.internal/ubuntu oracular/main ppc64el libgfortran5 ppc64el 14.1.0-1ubuntu1 [573 kB] 319s Get:4 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1build1 [110 kB] 319s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libhts3t64 ppc64el 1.20+ds-1 [567 kB] 319s Get:6 http://ftpmaster.internal/ubuntu oracular/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 320s Get:7 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-all ppc64el 3.12.3-0ubuntu1 [888 B] 320s Get:8 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 320s Get:9 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-click all 8.1.7-1 [79.1 kB] 320s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-humanfriendly all 10.0-5 [70.5 kB] 320s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 320s Get:12 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-10 [4408 kB] 320s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cyvcf2 ppc64el 0.31.0-1 [876 kB] 320s Fetched 9787 kB in 1s (10.6 MB/s) 320s Selecting previously unselected package libblas3:ppc64el. 320s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72602 files and directories currently installed.) 320s Preparing to unpack .../00-libblas3_3.12.0-3build1_ppc64el.deb ... 320s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 320s Selecting previously unselected package libgfortran5:ppc64el. 320s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_ppc64el.deb ... 320s Unpacking libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 320s Selecting previously unselected package libhtscodecs2:ppc64el. 320s Preparing to unpack .../02-libhtscodecs2_1.6.0-1build1_ppc64el.deb ... 320s Unpacking libhtscodecs2:ppc64el (1.6.0-1build1) ... 320s Selecting previously unselected package libhts3t64:ppc64el. 320s Preparing to unpack .../03-libhts3t64_1.20+ds-1_ppc64el.deb ... 320s Unpacking libhts3t64:ppc64el (1.20+ds-1) ... 320s Selecting previously unselected package liblapack3:ppc64el. 320s Preparing to unpack .../04-liblapack3_3.12.0-3build1_ppc64el.deb ... 320s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 320s Selecting previously unselected package python3-all. 320s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_ppc64el.deb ... 320s Unpacking python3-all (3.12.3-0ubuntu1) ... 320s Selecting previously unselected package python3-colorama. 320s Preparing to unpack .../06-python3-colorama_0.4.6-4_all.deb ... 320s Unpacking python3-colorama (0.4.6-4) ... 320s Selecting previously unselected package python3-click. 320s Preparing to unpack .../07-python3-click_8.1.7-1_all.deb ... 320s Unpacking python3-click (8.1.7-1) ... 320s Selecting previously unselected package python3-humanfriendly. 320s Preparing to unpack .../08-python3-humanfriendly_10.0-5_all.deb ... 320s Unpacking python3-humanfriendly (10.0-5) ... 320s Selecting previously unselected package python3-coloredlogs. 320s Preparing to unpack .../09-python3-coloredlogs_15.0.1-1_all.deb ... 320s Unpacking python3-coloredlogs (15.0.1-1) ... 320s Selecting previously unselected package python3-numpy. 320s Preparing to unpack .../10-python3-numpy_1%3a1.26.4+ds-10_ppc64el.deb ... 320s Unpacking python3-numpy (1:1.26.4+ds-10) ... 321s Selecting previously unselected package python3-cyvcf2. 321s Preparing to unpack .../11-python3-cyvcf2_0.31.0-1_ppc64el.deb ... 321s Unpacking python3-cyvcf2 (0.31.0-1) ... 321s Selecting previously unselected package autopkgtest-satdep. 321s Preparing to unpack .../12-2-autopkgtest-satdep.deb ... 321s Unpacking autopkgtest-satdep (0) ... 321s Setting up libhtscodecs2:ppc64el (1.6.0-1build1) ... 321s Setting up python3-colorama (0.4.6-4) ... 321s Setting up python3-all (3.12.3-0ubuntu1) ... 321s Setting up python3-click (8.1.7-1) ... 321s Setting up libblas3:ppc64el (3.12.0-3build1) ... 321s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 321s Setting up python3-humanfriendly (10.0-5) ... 321s Setting up libgfortran5:ppc64el (14.1.0-1ubuntu1) ... 321s Setting up libhts3t64:ppc64el (1.20+ds-1) ... 321s Setting up python3-coloredlogs (15.0.1-1) ... 321s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 321s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 321s Setting up python3-numpy (1:1.26.4+ds-10) ... 324s Setting up python3-cyvcf2 (0.31.0-1) ... 324s Setting up autopkgtest-satdep (0) ... 324s Processing triggers for man-db (2.12.1-1) ... 324s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 327s (Reading database ... 73700 files and directories currently installed.) 327s Removing autopkgtest-satdep (0) ... 329s autopkgtest [00:44:16]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 329s autopkgtest [00:44:16]: test autodep8-python3: [----------------------- 329s Testing with python3.12: 329s 329s autopkgtest [00:44:16]: test autodep8-python3: -----------------------] 330s autopkgtest [00:44:17]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 330s autodep8-python3 PASS (superficial) 330s autopkgtest [00:44:17]: @@@@@@@@@@@@@@@@@@@@ summary 330s run-unit-test PASS 330s autodep8-python3 PASS (superficial) 340s nova [W] Using flock in scalingstack-bos02-ppc64el 340s Creating nova instance adt-oracular-ppc64el-cyvcf2-20240608-003847-juju-7f2275-prod-proposed-migration-environment-3-9b71202b-3069-4bf6-8dcc-ec14ae2cf5b9 from image adt/ubuntu-oracular-ppc64el-server-20240607.img (UUID 2e7ff4dd-25ad-4882-8618-1243d2d4ac8e)... 340s nova [W] Using flock in scalingstack-bos02-ppc64el 340s flock: timeout while waiting to get lock 340s Creating nova instance adt-oracular-ppc64el-cyvcf2-20240608-003847-juju-7f2275-prod-proposed-migration-environment-3-9b71202b-3069-4bf6-8dcc-ec14ae2cf5b9 from image adt/ubuntu-oracular-ppc64el-server-20240607.img (UUID 2e7ff4dd-25ad-4882-8618-1243d2d4ac8e)...