0s autopkgtest [16:02:50]: starting date and time: 2024-05-03 16:02:50+0000 0s autopkgtest [16:02:50]: git checkout: 699e7f9f ssh-setup/nova: explicitely set 'fqdn' in cloud-init 0s autopkgtest [16:02:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.37e3u15g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cwlformat,src:monty,src:ruamel.yaml.clib,src:ruamel.yaml --apt-upgrade cwl-utils --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cwlformat/2022.02.18-3 monty/2024.4.17-1 ruamel.yaml.clib/0.2.8+ds-1 ruamel.yaml/0.18.6+ds-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-8.secgroup --name adt-oracular-ppc64el-cwl-utils-20240503-160250-juju-7f2275-prod-proposed-migration-environment-2-c48dc8cb-10d6-442d-b306-5b6994070ba0 --image adt/ubuntu-oracular-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 236s autopkgtest [16:06:46]: testbed dpkg architecture: ppc64el 236s autopkgtest [16:06:46]: testbed apt version: 2.7.14build2 236s autopkgtest [16:06:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 237s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 237s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [147 kB] 237s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [2800 B] 237s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [35.6 kB] 237s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [2004 kB] 237s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [200 kB] 237s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1260 B] 237s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [1280 kB] 238s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [27.9 kB] 238s Fetched 3763 kB in 1s (2805 kB/s) 238s Reading package lists... 241s Reading package lists... 241s Building dependency tree... 241s Reading state information... 241s Calculating upgrade... 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 243s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 243s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 243s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 243s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 244s Reading package lists... 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 244s Calculating upgrade... 244s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 244s Reading package lists... 245s Building dependency tree... 245s Reading state information... 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 248s autopkgtest [16:06:58]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP Sat Apr 20 00:05:55 UTC 2024 248s autopkgtest [16:06:58]: @@@@@@@@@@@@@@@@@@@@ apt-source cwl-utils 251s Get:1 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (dsc) [2459 B] 251s Get:2 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (tar) [304 kB] 251s Get:3 http://ftpmaster.internal/ubuntu oracular/universe cwl-utils 0.32-1 (diff) [3584 B] 251s gpgv: Signature made Tue Jan 23 11:29:08 2024 UTC 251s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 251s gpgv: Can't check signature: No public key 251s dpkg-source: warning: cannot verify inline signature for ./cwl-utils_0.32-1.dsc: no acceptable signature found 251s autopkgtest [16:07:01]: testing package cwl-utils version 0.32-1 251s autopkgtest [16:07:01]: build not needed 252s autopkgtest [16:07:02]: test run-tests: preparing testbed 254s Reading package lists... 254s Building dependency tree... 254s Reading state information... 254s Starting pkgProblemResolver with broken count: 0 254s Starting 2 pkgProblemResolver with broken count: 0 254s Done 254s The following additional packages will be installed: 254s cwl-upgrader cwl-utils cwlformat fonts-glyphicons-halflings libcares2 254s libjs-bootstrap libnode109 node-acorn node-cjs-module-lexer node-undici 254s node-xtend nodejs python3-cachecontrol python3-cwl-utils python3-execnet 254s python3-filelock python3-iniconfig python3-isodate python3-mistune 254s python3-mock python3-msgpack python3-mypy-extensions python3-packaging 254s python3-pluggy python3-pytest python3-pytest-mock python3-pytest-xdist 254s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 254s python3-schema-salad 254s Suggested packages: 254s cwltool npm execnet-doc python-mock-doc python-pytest-mock-doc 254s python-rdflib-doc 254s Recommended packages: 254s nodejs-doc python3-sparqlwrapper python3-html5lib cwltool black 255s The following NEW packages will be installed: 255s autopkgtest-satdep cwl-upgrader cwl-utils cwlformat 255s fonts-glyphicons-halflings libcares2 libjs-bootstrap libnode109 node-acorn 255s node-cjs-module-lexer node-undici node-xtend nodejs python3-cachecontrol 255s python3-cwl-utils python3-execnet python3-filelock python3-iniconfig 255s python3-isodate python3-mistune python3-mock python3-msgpack 255s python3-mypy-extensions python3-packaging python3-pluggy python3-pytest 255s python3-pytest-mock python3-pytest-xdist python3-rdflib python3-ruamel.yaml 255s python3-ruamel.yaml.clib python3-schema-salad 255s 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. 255s Need to get 15.9 MB/15.9 MB of archives. 255s After this operation, 82.9 MB of additional disk space will be used. 255s Get:1 /tmp/autopkgtest.eyLHQS/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [748 B] 255s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-ruamel.yaml.clib ppc64el 0.2.8+ds-1 [158 kB] 255s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 255s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-msgpack ppc64el 1.0.3-3build2 [86.9 kB] 255s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cachecontrol all 0.14.0-1 [19.0 kB] 255s Get:6 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mistune all 3.0.2-1 [32.8 kB] 255s Get:7 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mypy-extensions all 1.0.0-1 [6148 B] 255s Get:8 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-isodate all 0.6.1-2 [24.3 kB] 255s Get:9 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-rdflib all 6.1.1-3 [362 kB] 255s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-filelock all 3.13.1-1 [10.8 kB] 255s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 255s Get:12 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 255s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-schema-salad ppc64el 8.5.20240102191335-1build1 [996 kB] 255s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cwl-upgrader all 1.2.11-1 [16.0 kB] 255s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 255s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cwl-utils all 0.32-1 [118 kB] 255s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cwl-utils all 0.32-1 [2824 B] 255s Get:18 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el cwlformat all 2022.02.18-3 [7622 B] 255s Get:19 http://ftpmaster.internal/ubuntu oracular/main ppc64el libcares2 ppc64el 1.27.0-1.0ubuntu1 [99.0 kB] 255s Get:20 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-xtend all 4.0.2-3 [3902 B] 255s Get:21 http://ftpmaster.internal/ubuntu oracular/universe ppc64el nodejs ppc64el 18.19.1+dfsg-6ubuntu5 [307 kB] 255s Get:22 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 255s Get:23 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 255s Get:24 http://ftpmaster.internal/ubuntu oracular/universe ppc64el node-undici all 5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2 [335 kB] 255s Get:25 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libnode109 ppc64el 18.19.1+dfsg-6ubuntu5 [12.3 MB] 256s Get:26 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-execnet all 2.0.0-2 [33.6 kB] 256s Get:27 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 256s Get:28 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 256s Get:29 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 256s Get:30 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 256s Get:31 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-pytest-xdist all 3.4.0-1 [32.0 kB] 256s Get:32 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mock all 5.1.0-1 [64.1 kB] 256s Fetched 15.9 MB in 1s (11.9 MB/s) 256s Selecting previously unselected package python3-ruamel.yaml.clib:ppc64el. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72135 files and directories currently installed.) 256s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8+ds-1_ppc64el.deb ... 256s Unpacking python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-1) ... 256s Selecting previously unselected package python3-ruamel.yaml. 256s Preparing to unpack .../01-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 256s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 256s Selecting previously unselected package python3-msgpack. 256s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_ppc64el.deb ... 256s Unpacking python3-msgpack (1.0.3-3build2) ... 256s Selecting previously unselected package python3-cachecontrol. 256s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 256s Unpacking python3-cachecontrol (0.14.0-1) ... 256s Selecting previously unselected package python3-mistune. 256s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 256s Unpacking python3-mistune (3.0.2-1) ... 256s Selecting previously unselected package python3-mypy-extensions. 256s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 256s Unpacking python3-mypy-extensions (1.0.0-1) ... 256s Selecting previously unselected package python3-isodate. 256s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 256s Unpacking python3-isodate (0.6.1-2) ... 257s Selecting previously unselected package python3-rdflib. 257s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 257s Unpacking python3-rdflib (6.1.1-3) ... 257s Selecting previously unselected package python3-filelock. 257s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 257s Unpacking python3-filelock (3.13.1-1) ... 257s Selecting previously unselected package fonts-glyphicons-halflings. 257s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 257s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 257s Selecting previously unselected package libjs-bootstrap. 257s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 257s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 257s Selecting previously unselected package python3-schema-salad. 257s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1build1_ppc64el.deb ... 257s Unpacking python3-schema-salad (8.5.20240102191335-1build1) ... 257s Selecting previously unselected package cwl-upgrader. 257s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 257s Unpacking cwl-upgrader (1.2.11-1) ... 257s Selecting previously unselected package python3-packaging. 257s Preparing to unpack .../13-python3-packaging_24.0-1_all.deb ... 257s Unpacking python3-packaging (24.0-1) ... 257s Selecting previously unselected package python3-cwl-utils. 257s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 257s Unpacking python3-cwl-utils (0.32-1) ... 257s Selecting previously unselected package cwl-utils. 257s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 257s Unpacking cwl-utils (0.32-1) ... 257s Selecting previously unselected package cwlformat. 257s Preparing to unpack .../16-cwlformat_2022.02.18-3_all.deb ... 257s Unpacking cwlformat (2022.02.18-3) ... 257s Selecting previously unselected package libcares2:ppc64el. 257s Preparing to unpack .../17-libcares2_1.27.0-1.0ubuntu1_ppc64el.deb ... 257s Unpacking libcares2:ppc64el (1.27.0-1.0ubuntu1) ... 257s Selecting previously unselected package node-xtend. 257s Preparing to unpack .../18-node-xtend_4.0.2-3_all.deb ... 257s Unpacking node-xtend (4.0.2-3) ... 257s Selecting previously unselected package nodejs. 257s Preparing to unpack .../19-nodejs_18.19.1+dfsg-6ubuntu5_ppc64el.deb ... 257s Unpacking nodejs (18.19.1+dfsg-6ubuntu5) ... 257s Selecting previously unselected package node-acorn. 257s Preparing to unpack .../20-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 257s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 257s Selecting previously unselected package node-cjs-module-lexer. 257s Preparing to unpack .../21-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 257s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 257s Selecting previously unselected package node-undici. 257s Preparing to unpack .../22-node-undici_5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2_all.deb ... 257s Unpacking node-undici (5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2) ... 257s Selecting previously unselected package libnode109:ppc64el. 257s Preparing to unpack .../23-libnode109_18.19.1+dfsg-6ubuntu5_ppc64el.deb ... 257s Unpacking libnode109:ppc64el (18.19.1+dfsg-6ubuntu5) ... 257s Selecting previously unselected package python3-execnet. 257s Preparing to unpack .../24-python3-execnet_2.0.0-2_all.deb ... 257s Unpacking python3-execnet (2.0.0-2) ... 257s Selecting previously unselected package python3-iniconfig. 257s Preparing to unpack .../25-python3-iniconfig_1.1.1-2_all.deb ... 257s Unpacking python3-iniconfig (1.1.1-2) ... 257s Selecting previously unselected package python3-pluggy. 257s Preparing to unpack .../26-python3-pluggy_1.4.0-1_all.deb ... 257s Unpacking python3-pluggy (1.4.0-1) ... 257s Selecting previously unselected package python3-pytest. 257s Preparing to unpack .../27-python3-pytest_7.4.4-1_all.deb ... 257s Unpacking python3-pytest (7.4.4-1) ... 257s Selecting previously unselected package python3-pytest-mock. 257s Preparing to unpack .../28-python3-pytest-mock_3.12.0-1.1_all.deb ... 257s Unpacking python3-pytest-mock (3.12.0-1.1) ... 258s Selecting previously unselected package python3-pytest-xdist. 258s Preparing to unpack .../29-python3-pytest-xdist_3.4.0-1_all.deb ... 258s Unpacking python3-pytest-xdist (3.4.0-1) ... 258s Selecting previously unselected package python3-mock. 258s Preparing to unpack .../30-python3-mock_5.1.0-1_all.deb ... 258s Unpacking python3-mock (5.1.0-1) ... 258s Selecting previously unselected package autopkgtest-satdep. 258s Preparing to unpack .../31-1-autopkgtest-satdep.deb ... 258s Unpacking autopkgtest-satdep (0) ... 258s Setting up python3-iniconfig (1.1.1-2) ... 258s Setting up python3-filelock (3.13.1-1) ... 258s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 258s Setting up python3-mypy-extensions (1.0.0-1) ... 258s Setting up python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-1) ... 258s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 258s Setting up python3-mock (5.1.0-1) ... 258s Setting up python3-isodate (0.6.1-2) ... 259s Setting up python3-packaging (24.0-1) ... 259s Setting up libcares2:ppc64el (1.27.0-1.0ubuntu1) ... 259s Setting up python3-pluggy (1.4.0-1) ... 259s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 259s Setting up node-undici (5.28.2+dfsg1+~cs23.11.12.3-6ubuntu2) ... 259s Setting up python3-rdflib (6.1.1-3) ... 259s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 259s """Converts the given graph into a networkx.MultiDiGraph. 259s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 259s """Converts the given graph into a networkx.DiGraph. 259s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 259s """Converts the given graph into a networkx.Graph. 260s Setting up python3-msgpack (1.0.3-3build2) ... 260s Setting up python3-cachecontrol (0.14.0-1) ... 260s Setting up node-xtend (4.0.2-3) ... 260s Setting up python3-execnet (2.0.0-2) ... 260s Setting up python3-mistune (3.0.2-1) ... 260s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 260s Setting up python3-pytest (7.4.4-1) ... 261s Setting up python3-schema-salad (8.5.20240102191335-1build1) ... 261s Setting up cwlformat (2022.02.18-3) ... 261s Setting up cwl-upgrader (1.2.11-1) ... 262s Setting up python3-pytest-mock (3.12.0-1.1) ... 262s Setting up python3-pytest-xdist (3.4.0-1) ... 262s Setting up python3-cwl-utils (0.32-1) ... 263s Setting up cwl-utils (0.32-1) ... 263s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 263s Setting up libnode109:ppc64el (18.19.1+dfsg-6ubuntu5) ... 263s Setting up nodejs (18.19.1+dfsg-6ubuntu5) ... 263s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 263s Setting up autopkgtest-satdep (0) ... 263s Processing triggers for libc-bin (2.39-0ubuntu8) ... 263s Processing triggers for man-db (2.12.0-4build2) ... 267s (Reading database ... 74020 files and directories currently installed.) 267s Removing autopkgtest-satdep (0) ... 268s autopkgtest [16:07:18]: test run-tests: [----------------------- 268s + pkg=cwl-utils 268s + [ /tmp/autopkgtest.eyLHQS/autopkgtest_tmp = ] 268s + cd /tmp/autopkgtest.eyLHQS/autopkgtest_tmp 268s + py.test-3 -rs --numprocesses=auto --pyargs cwl_utils 269s ============================= test session starts ============================== 269s platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 269s rootdir: /tmp/autopkgtest.eyLHQS/autopkgtest_tmp 269s plugins: mock-3.12.0, xdist-3.4.0 269s created: 1/1 worker 269s 1 worker [184 items] 269s 273s ..sssssssssssssss............................................ssss....... [ 39%] 283s ........................................................................ [ 78%] 284s ........................................ [100%] 284s =============================== warnings summary =============================== 284s ../../../usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6 284s /usr/lib/python3/dist-packages/cwl_utils/tests/util.py:6: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 284s from pkg_resources import Requirement, ResolutionError, resource_filename 284s 284s ../../../usr/lib/python3/dist-packages/cwlformat/formatter.py:23 284s /usr/lib/python3/dist-packages/cwlformat/formatter.py:23: DeprecationWarning: read_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 284s key_order_dict = yaml.load(read_text("cwlformat", "keyorder.yml")) 284s 284s ../../../usr/lib/python3.12/importlib/resources/_legacy.py:79 284s /usr/lib/python3.12/importlib/resources/_legacy.py:79: DeprecationWarning: open_text is deprecated. Use files() instead. Refer to https://importlib-resources.readthedocs.io/en/latest/using.html#migrating-from-legacy for migration advice. 284s with open_text(package, resource, encoding, errors) as fp: 284s 284s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 284s =========================== short test summary info ============================ 284s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the docker executable on the system path. 284s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the podman executable on the system path. 284s SKIPPED [2] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:12: Requires the singularity executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the docker executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the podman executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:34: Requires the singularity executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the docker executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the podman executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:72: Requires the singularity executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the docker executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the podman executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_docker_extract.py:107: Requires the singularity executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:78: Requires the podman executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:104: Requires the udocker executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:130: Requires the singularity executable on the system path. 284s SKIPPED [1] ../../../usr/lib/python3/dist-packages/cwl_utils/tests/test_js_sandbox.py:156: Requires the singularity executable on the system path. 284s ================= 165 passed, 19 skipped, 3 warnings in 15.92s ================= 284s autopkgtest [16:07:34]: test run-tests: -----------------------] 285s run-tests PASS 285s autopkgtest [16:07:35]: test run-tests: - - - - - - - - - - results - - - - - - - - - - 285s autopkgtest [16:07:35]: test command1: preparing testbed 917s autopkgtest [16:18:07]: testbed dpkg architecture: ppc64el 917s autopkgtest [16:18:07]: testbed apt version: 2.7.14build2 917s autopkgtest [16:18:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 918s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [64.7 kB] 918s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [2800 B] 918s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [2004 kB] 919s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [35.6 kB] 919s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [147 kB] 919s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main ppc64el Packages [200 kB] 919s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted ppc64el Packages [1260 B] 919s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el Packages [1280 kB] 919s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse ppc64el Packages [27.9 kB] 919s Fetched 3763 kB in 1s (2765 kB/s) 919s Reading package lists... 922s Reading package lists... 922s Building dependency tree... 922s Reading state information... 922s Calculating upgrade... 922s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 922s Reading package lists... 922s Building dependency tree... 922s Reading state information... 922s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 923s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 923s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 923s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 923s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 924s Reading package lists... 924s Reading package lists... 924s Building dependency tree... 924s Reading state information... 924s Calculating upgrade... 925s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 925s Reading package lists... 925s Building dependency tree... 925s Reading state information... 925s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 929s Reading package lists... 929s Building dependency tree... 929s Reading state information... 930s Starting pkgProblemResolver with broken count: 0 930s Starting 2 pkgProblemResolver with broken count: 0 930s Done 930s The following additional packages will be installed: 930s cwl-upgrader cwl-utils fonts-glyphicons-halflings libjs-bootstrap 930s python3-cachecontrol python3-cwl-utils python3-filelock python3-isodate 930s python3-mistune python3-msgpack python3-mypy-extensions python3-packaging 930s python3-rdflib python3-ruamel.yaml python3-ruamel.yaml.clib 930s python3-schema-salad 930s Suggested packages: 930s cwltool cwlformat python-rdflib-doc 930s Recommended packages: 930s python3-sparqlwrapper python3-html5lib cwltool black 930s The following NEW packages will be installed: 930s autopkgtest-satdep cwl-upgrader cwl-utils fonts-glyphicons-halflings 930s libjs-bootstrap python3-cachecontrol python3-cwl-utils python3-filelock 930s python3-isodate python3-mistune python3-msgpack python3-mypy-extensions 930s python3-packaging python3-rdflib python3-ruamel.yaml 930s python3-ruamel.yaml.clib python3-schema-salad 930s 0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded. 930s Need to get 2248 kB/2248 kB of archives. 930s After this operation, 17.4 MB of additional disk space will be used. 930s Get:1 /tmp/autopkgtest.eyLHQS/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [708 B] 930s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-ruamel.yaml.clib ppc64el 0.2.8+ds-1 [158 kB] 930s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el python3-ruamel.yaml all 0.18.6+ds-3 [126 kB] 930s Get:4 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-msgpack ppc64el 1.0.3-3build2 [86.9 kB] 930s Get:5 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cachecontrol all 0.14.0-1 [19.0 kB] 930s Get:6 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mistune all 3.0.2-1 [32.8 kB] 930s Get:7 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-mypy-extensions all 1.0.0-1 [6148 B] 930s Get:8 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-isodate all 0.6.1-2 [24.3 kB] 930s Get:9 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-rdflib all 6.1.1-3 [362 kB] 930s Get:10 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-filelock all 3.13.1-1 [10.8 kB] 930s Get:11 http://ftpmaster.internal/ubuntu oracular/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 930s Get:12 http://ftpmaster.internal/ubuntu oracular/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 930s Get:13 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-schema-salad ppc64el 8.5.20240102191335-1build1 [996 kB] 930s Get:14 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cwl-upgrader all 1.2.11-1 [16.0 kB] 930s Get:15 http://ftpmaster.internal/ubuntu oracular/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 930s Get:16 http://ftpmaster.internal/ubuntu oracular/universe ppc64el python3-cwl-utils all 0.32-1 [118 kB] 930s Get:17 http://ftpmaster.internal/ubuntu oracular/universe ppc64el cwl-utils all 0.32-1 [2824 B] 931s Fetched 2248 kB in 1s (3388 kB/s) 931s Selecting previously unselected package python3-ruamel.yaml.clib:ppc64el. 931s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 72135 files and directories currently installed.) 931s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8+ds-1_ppc64el.deb ... 931s Unpacking python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-1) ... 931s Selecting previously unselected package python3-ruamel.yaml. 931s Preparing to unpack .../01-python3-ruamel.yaml_0.18.6+ds-3_all.deb ... 931s Unpacking python3-ruamel.yaml (0.18.6+ds-3) ... 931s Selecting previously unselected package python3-msgpack. 931s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_ppc64el.deb ... 931s Unpacking python3-msgpack (1.0.3-3build2) ... 931s Selecting previously unselected package python3-cachecontrol. 931s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 931s Unpacking python3-cachecontrol (0.14.0-1) ... 931s Selecting previously unselected package python3-mistune. 931s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 931s Unpacking python3-mistune (3.0.2-1) ... 931s Selecting previously unselected package python3-mypy-extensions. 931s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 931s Unpacking python3-mypy-extensions (1.0.0-1) ... 931s Selecting previously unselected package python3-isodate. 931s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 931s Unpacking python3-isodate (0.6.1-2) ... 931s Selecting previously unselected package python3-rdflib. 931s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 931s Unpacking python3-rdflib (6.1.1-3) ... 931s Selecting previously unselected package python3-filelock. 931s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 931s Unpacking python3-filelock (3.13.1-1) ... 931s Selecting previously unselected package fonts-glyphicons-halflings. 931s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 931s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 931s Selecting previously unselected package libjs-bootstrap. 931s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 931s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 931s Selecting previously unselected package python3-schema-salad. 931s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1build1_ppc64el.deb ... 931s Unpacking python3-schema-salad (8.5.20240102191335-1build1) ... 931s Selecting previously unselected package cwl-upgrader. 931s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 931s Unpacking cwl-upgrader (1.2.11-1) ... 931s Selecting previously unselected package python3-packaging. 931s Preparing to unpack .../13-python3-packaging_24.0-1_all.deb ... 931s Unpacking python3-packaging (24.0-1) ... 931s Selecting previously unselected package python3-cwl-utils. 931s Preparing to unpack .../14-python3-cwl-utils_0.32-1_all.deb ... 931s Unpacking python3-cwl-utils (0.32-1) ... 931s Selecting previously unselected package cwl-utils. 931s Preparing to unpack .../15-cwl-utils_0.32-1_all.deb ... 931s Unpacking cwl-utils (0.32-1) ... 931s Selecting previously unselected package autopkgtest-satdep. 931s Preparing to unpack .../16-2-autopkgtest-satdep.deb ... 931s Unpacking autopkgtest-satdep (0) ... 931s Setting up python3-filelock (3.13.1-1) ... 931s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 931s Setting up python3-mypy-extensions (1.0.0-1) ... 932s Setting up python3-ruamel.yaml.clib:ppc64el (0.2.8+ds-1) ... 932s Setting up python3-isodate (0.6.1-2) ... 932s Setting up python3-packaging (24.0-1) ... 932s Setting up python3-ruamel.yaml (0.18.6+ds-3) ... 932s Setting up python3-rdflib (6.1.1-3) ... 932s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 932s """Converts the given graph into a networkx.MultiDiGraph. 932s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 932s """Converts the given graph into a networkx.DiGraph. 932s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 932s """Converts the given graph into a networkx.Graph. 933s Setting up python3-msgpack (1.0.3-3build2) ... 933s Setting up python3-cachecontrol (0.14.0-1) ... 933s Setting up python3-mistune (3.0.2-1) ... 933s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 933s Setting up python3-schema-salad (8.5.20240102191335-1build1) ... 933s Setting up cwl-upgrader (1.2.11-1) ... 933s Setting up python3-cwl-utils (0.32-1) ... 934s Setting up cwl-utils (0.32-1) ... 934s Setting up autopkgtest-satdep (0) ... 935s Processing triggers for man-db (2.12.0-4build2) ... 937s (Reading database ... 73214 files and directories currently installed.) 937s Removing autopkgtest-satdep (0) ... 939s autopkgtest [16:18:29]: test command1: cwl-cite-extract --help && cwl-docker-extract --help && cwl-expression-refactor --help && cwl-normalizer --help 939s autopkgtest [16:18:29]: test command1: [----------------------- 939s usage: cwl-cite-extract [-h] input 939s 939s Print information about software used in a CWL document (Workflow or 939s CommandLineTool). For CWL Workflows, all steps will also be searched 939s (recursively). 939s 939s positional arguments: 939s input Input CWL document (CWL Workflow or CWL CommandLineTool) 939s 939s options: 939s -h, --help show this help message and exit 940s usage: cwl-docker-extract [-h] [--dir DIR] [-s] 940s [--container-engine CONTAINER_ENGINE] 940s [--force-download] 940s input 940s 940s Save container images specified in a CWL document (Workflow or 940s CommandLineTool). For CWL Workflows, all steps will also be searched 940s (recursively). 940s 940s positional arguments: 940s input Input CWL document (CWL Workflow or CWL 940s CommandLineTool) 940s 940s options: 940s -h, --help show this help message and exit 940s --dir DIR Directory in which to save images 940s -s, --singularity Use singularity to pull the image 940s --container-engine CONTAINER_ENGINE 940s Specify which command to use to run OCI containers. 940s Defaults to 'docker' (or 'singularity' if 940s --singularity/-s is passed). 940s --force-download Force pulling a newer container. 940s usage: cwl-expression-refactor [-h] [--etools] [--skip-some1] [--skip-some2] 940s dir inputs [inputs ...] 940s 940s Tool to refactor CWL documents so that any CWL expression are separate steps 940s as either ExpressionTools or CommandLineTools. Exit code 7 means a single CWL 940s document was provided but it did not need modification. 940s 940s positional arguments: 940s dir Directory in which to save converted files 940s inputs One or more CWL documents. 940s 940s options: 940s -h, --help show this help message and exit 940s --etools Output ExpressionTools, don't go all the way to 940s CommandLineTools. 940s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 940s CommandLineTool.arguments sections. 940s --skip-some2 Don't process CommandLineTool.outputEval or 940s CommandLineTool.requirements.InitialWorkDirRequirement. 940s usage: cwl-normalizer [-h] [--etools] [--skip-some1] [--skip-some2] 940s [--no-expression-refactoring] 940s dir inputs [inputs ...] 940s 940s Normalizes CWL documents. Will upgrade to CWL v1.2, and pack the result. Can 940s optionally refactor out CWL expressions. 940s 940s positional arguments: 940s dir Directory in which to save converted files 940s inputs One or more CWL documents. 940s 940s options: 940s -h, --help show this help message and exit 940s --etools Output ExpressionTools, don't go all the way to 940s CommandLineTools. 940s --skip-some1 Don't process CommandLineTool.inputs.inputBinding and 940s CommandLineTool.arguments sections. 940s --skip-some2 Don't process CommandLineTool.outputEval or CommandLin 940s eTool.requirements.InitialWorkDirRequirement. 940s --no-expression-refactoring 940s Don't do any CWL expression refactoring. 941s autopkgtest [16:18:31]: test command1: -----------------------] 941s autopkgtest [16:18:31]: test command1: - - - - - - - - - - results - - - - - - - - - - 941s command1 PASS (superficial) 941s autopkgtest [16:18:31]: test command2: preparing testbed 943s Reading package lists... 943s Building dependency tree... 943s Reading state information... 943s Starting pkgProblemResolver with broken count: 0 943s Starting 2 pkgProblemResolver with broken count: 0 943s Done 943s The following additional packages will be installed: 943s cwlformat 943s The following NEW packages will be installed: 943s autopkgtest-satdep cwlformat 943s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 943s Need to get 7622 B/8334 B of archives. 943s After this operation, 39.9 kB of additional disk space will be used. 943s Get:1 /tmp/autopkgtest.eyLHQS/3-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B] 943s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe ppc64el cwlformat all 2022.02.18-3 [7622 B] 944s Fetched 7622 B in 0s (51.1 kB/s) 944s Selecting previously unselected package cwlformat. 944s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73214 files and directories currently installed.) 944s Preparing to unpack .../cwlformat_2022.02.18-3_all.deb ... 944s Unpacking cwlformat (2022.02.18-3) ... 944s Selecting previously unselected package autopkgtest-satdep. 944s Preparing to unpack .../3-autopkgtest-satdep.deb ... 944s Unpacking autopkgtest-satdep (0) ... 944s Setting up cwlformat (2022.02.18-3) ... 944s Setting up autopkgtest-satdep (0) ... 945s (Reading database ... 73232 files and directories currently installed.) 945s Removing autopkgtest-satdep (0) ... 946s autopkgtest [16:18:36]: test command2: cwl-graph-split --help 946s autopkgtest [16:18:36]: test command2: [----------------------- 946s usage: cwl-graph-split [-h] [-m MAINFILE] [-f {json,yaml}] [-p] [-C OUTDIR] 946s cwlfile 946s 946s Split a packed CWL document. 946s 946s positional arguments: 946s cwlfile 946s 946s options: 946s -h, --help show this help message and exit 946s -m MAINFILE, --mainfile MAINFILE 946s Specify the name of the main document. 946s -f {json,yaml}, --output-format {json,yaml} 946s Specify the format of the output CWL files. 946s -p, --pretty Beautify the output CWL document, only works with yaml 946s format. 946s -C OUTDIR, --outdir OUTDIR 946s Output folder for the unpacked CWL files. 947s autopkgtest [16:18:37]: test command2: -----------------------] 947s command2 PASS (superficial) 947s autopkgtest [16:18:37]: test command2: - - - - - - - - - - results - - - - - - - - - - 948s autopkgtest [16:18:38]: @@@@@@@@@@@@@@@@@@@@ summary 948s run-tests PASS 948s command1 PASS (superficial) 948s command2 PASS (superficial) 996s Creating nova instance adt-oracular-ppc64el-cwl-utils-20240503-160250-juju-7f2275-prod-proposed-migration-environment-2-c48dc8cb-10d6-442d-b306-5b6994070ba0 from image adt/ubuntu-oracular-ppc64el-server-20240503.img (UUID 60999710-d97e-47d3-8cca-85ddcf19ebc0)... 996s Creating nova instance adt-oracular-ppc64el-cwl-utils-20240503-160250-juju-7f2275-prod-proposed-migration-environment-2-c48dc8cb-10d6-442d-b306-5b6994070ba0 from image adt/ubuntu-oracular-ppc64el-server-20240503.img (UUID 60999710-d97e-47d3-8cca-85ddcf19ebc0)...