5s autopkgtest [09:11:56]: starting date and time: 2024-07-08 09:11:56+0000 5s autopkgtest [09:11:56]: git checkout: fd3bed09 nova: allow more retries for quota issues 5s autopkgtest [09:11:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o22f4vum/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade qiime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-40.secgroup --name adt-oracular-i386-qiime-20240708-091142-juju-7f2275-prod-proposed-migration-environment-2-88b7117f-6cb6-40d9-be58-12c6407c8ac4 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [09:13:29]: testbed dpkg architecture: amd64 98s autopkgtest [09:13:29]: testbed apt version: 2.9.6 99s autopkgtest [09:13:30]: test architecture: i386 99s autopkgtest [09:13:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 103s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 103s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 103s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 103s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB] 103s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 103s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB] 103s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 103s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B] 103s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 103s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 103s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 103s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [199 kB] 103s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [345 kB] 103s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B] 103s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 103s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 103s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 105s Fetched 1317 kB in 0s (5121 kB/s) 105s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s The following packages will be upgraded: 108s fuse3 libfuse3-3 108s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 109 kB of archives. 108s After this operation, 4096 B of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 fuse3 amd64 3.14.0-6 [25.5 kB] 108s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfuse3-3 amd64 3.14.0-6 [83.2 kB] 108s Fetched 109 kB in 0s (2175 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74464 files and directories currently installed.) 108s Preparing to unpack .../fuse3_3.14.0-6_amd64.deb ... 108s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 108s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 108s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 108s Preparing to unpack .../libfuse3-3_3.14.0-6_amd64.deb ... 108s Unpacking libfuse3-3:amd64 (3.14.0-6) over (3.14.0-5build1) ... 108s Setting up libfuse3-3:amd64 (3.14.0-6) ... 108s Setting up fuse3 (3.14.0-6) ... 108s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 108s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 108s update-initramfs: deferring update (trigger activated) 108s Processing triggers for libc-bin (2.39-0ubuntu9) ... 108s Processing triggers for man-db (2.12.1-2) ... 110s Processing triggers for initramfs-tools (0.142ubuntu29) ... 110s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 110s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 120s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 120s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 120s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 121s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [09:13:54]: rebooting testbed after setup commands that affected boot 127s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 141s autopkgtest [09:14:12]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 143s autopkgtest [09:14:14]: @@@@@@@@@@@@@@@@@@@@ apt-source qiime 144s Get:1 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (dsc) [2597 B] 144s Get:2 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (tar) [621 kB] 144s Get:3 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (diff) [17.9 kB] 144s gpgv: Signature made Mon Jun 3 14:49:39 2024 UTC 144s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 144s gpgv: issuer "athos.ribeiro@canonical.com" 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./qiime_2024.2.0-1ubuntu1.dsc: no acceptable signature found 144s autopkgtest [09:14:15]: testing package qiime version 2024.2.0-1ubuntu1 145s autopkgtest [09:14:16]: build not needed 145s autopkgtest [09:14:16]: test run-unit-test: preparing testbed 148s Note, using file '/tmp/autopkgtest.OnwnC6/1-autopkgtest-satdep.dsc' to get the build dependencies 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 149s Starting 2 pkgProblemResolver with broken count: 0 149s Done 149s The following NEW packages will be installed: 149s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 149s fonts-glyphicons-halflings g++ g++-13 g++-13-x86-64-linux-gnu 149s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu 149s gcc-x86-64-linux-gnu javascript-common libasan8 libatomic1 libblas3 libcc1-0 149s libgcc-13-dev libgfortran5 libgomp1 libhwasan0 libisl23 libitm1 149s libjs-bootstrap libjs-jquery libjs-popper.js liblapack3 liblsan0 libmpc3 149s libnorm1t64 libpgm-5.3-0t64 libquadmath0 libsodium23 libstdc++-13-dev 149s libtsan2 libubsan1 libxslt1.1 libzmq5 node-fortawesome-fontawesome-free 149s python3-appdirs python3-bcrypt python3-bibtexparser python3-click 149s python3-colorama python3-dateutil python3-decorator python3-dill 149s python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock 149s python3-globus-sdk python3-greenlet python3-iniconfig python3-itsdangerous 149s python3-lxml python3-nacl python3-networkx python3-numpy python3-packaging 149s python3-pandas python3-pandas-lib python3-paramiko python3-parsl 149s python3-pluggy python3-psutil python3-public python3-py python3-pytest 149s python3-setproctitle python3-sqlalchemy python3-tblib python3-tomlkit 149s python3-typeguard python3-tzlocal python3-werkzeug python3-zmq qiime 149s 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 98.0 MB of archives. 149s After this operation, 427 MB of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB] 149s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 149s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 149s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB] 149s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B] 149s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 149s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 149s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB] 149s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 149s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB] 149s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 149s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB] 149s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB] 149s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB] 149s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB] 149s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB] 149s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB] 149s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB] 149s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB] 150s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB] 150s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 150s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 150s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB] 150s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB] 150s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB] 150s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 150s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 150s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 150s Get:29 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 150s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B] 150s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 150s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 150s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 150s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 150s Get:35 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 150s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 150s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 150s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 150s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 150s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 150s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 150s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 150s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 150s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 150s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 150s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 150s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 150s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 150s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dill all 0.3.8-1 [83.0 kB] 150s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB] 150s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 150s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-werkzeug all 3.0.3-1 [170 kB] 150s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 150s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB] 150s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 150s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 150s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 150s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-public all 4.1.0-1 [7052 B] 150s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flufl.lock all 8.1.0-1 [12.4 kB] 150s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-globus-sdk all 3.41.0-1 [225 kB] 150s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 150s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 150s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-nacl amd64 1.5.0-4build1 [57.9 kB] 150s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 150s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 150s Get:66 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 150s Get:67 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB] 150s Get:68 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 150s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bcrypt amd64 4.1.2-1 [229 kB] 150s Get:70 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 150s Get:71 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setproctitle amd64 1.3.3-1build2 [19.0 kB] 150s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tblib all 3.0.0-5 [12.9 kB] 150s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeguard all 4.1.5-1 [32.7 kB] 150s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 150s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB] 150s Get:76 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parsl all 2024.05.27+ds-1 [274 kB] 150s Get:77 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 150s Get:78 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 150s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tomlkit all 0.12.5-1 [37.7 kB] 150s Get:80 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tzlocal all 5.2-1.1 [20.5 kB] 150s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 qiime all 2024.2.0-1ubuntu1 [311 kB] 151s Fetched 98.0 MB in 1s (115 MB/s) 151s Selecting previously unselected package gcc-13-base:amd64. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 151s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ... 151s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 151s Selecting previously unselected package libisl23:amd64. 151s Preparing to unpack .../01-libisl23_0.26-3build1_amd64.deb ... 151s Unpacking libisl23:amd64 (0.26-3build1) ... 151s Selecting previously unselected package libmpc3:amd64. 151s Preparing to unpack .../02-libmpc3_1.3.1-1build1_amd64.deb ... 151s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 151s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 151s Preparing to unpack .../03-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 151s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 151s Selecting previously unselected package cpp-13. 151s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_amd64.deb ... 151s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 151s Selecting previously unselected package cpp-x86-64-linux-gnu. 151s Preparing to unpack .../05-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 151s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 151s Selecting previously unselected package cpp. 151s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 151s Unpacking cpp (4:13.2.0-7ubuntu1) ... 151s Selecting previously unselected package libcc1-0:amd64. 151s Preparing to unpack .../07-libcc1-0_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libcc1-0:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package libgomp1:amd64. 151s Preparing to unpack .../08-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package libitm1:amd64. 151s Preparing to unpack .../09-libitm1_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package libatomic1:amd64. 151s Preparing to unpack .../10-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package libasan8:amd64. 151s Preparing to unpack .../11-libasan8_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package liblsan0:amd64. 151s Preparing to unpack .../12-liblsan0_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ... 151s Selecting previously unselected package libtsan2:amd64. 151s Preparing to unpack .../13-libtsan2_14.1.0-1ubuntu1_amd64.deb ... 151s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ... 152s Selecting previously unselected package libubsan1:amd64. 152s Preparing to unpack .../14-libubsan1_14.1.0-1ubuntu1_amd64.deb ... 152s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ... 152s Selecting previously unselected package libhwasan0:amd64. 152s Preparing to unpack .../15-libhwasan0_14.1.0-1ubuntu1_amd64.deb ... 152s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ... 152s Selecting previously unselected package libquadmath0:amd64. 152s Preparing to unpack .../16-libquadmath0_14.1.0-1ubuntu1_amd64.deb ... 152s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ... 152s Selecting previously unselected package libgcc-13-dev:amd64. 152s Preparing to unpack .../17-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ... 152s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 152s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 152s Preparing to unpack .../18-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 152s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 152s Selecting previously unselected package gcc-13. 152s Preparing to unpack .../19-gcc-13_13.2.0-23ubuntu4_amd64.deb ... 152s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 152s Selecting previously unselected package gcc-x86-64-linux-gnu. 152s Preparing to unpack .../20-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 152s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package gcc. 152s Preparing to unpack .../21-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 152s Unpacking gcc (4:13.2.0-7ubuntu1) ... 152s Selecting previously unselected package libstdc++-13-dev:amd64. 152s Preparing to unpack .../22-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ... 152s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 152s Selecting previously unselected package g++-13-x86-64-linux-gnu. 152s Preparing to unpack .../23-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 152s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 153s Selecting previously unselected package g++-13. 153s Preparing to unpack .../24-g++-13_13.2.0-23ubuntu4_amd64.deb ... 153s Unpacking g++-13 (13.2.0-23ubuntu4) ... 153s Selecting previously unselected package g++-x86-64-linux-gnu. 153s Preparing to unpack .../25-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 153s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package g++. 153s Preparing to unpack .../26-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 153s Unpacking g++ (4:13.2.0-7ubuntu1) ... 153s Selecting previously unselected package build-essential. 153s Preparing to unpack .../27-build-essential_12.10ubuntu1_amd64.deb ... 153s Unpacking build-essential (12.10ubuntu1) ... 153s Selecting previously unselected package fonts-glyphicons-halflings. 153s Preparing to unpack .../28-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 153s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 153s Selecting previously unselected package javascript-common. 153s Preparing to unpack .../29-javascript-common_11+nmu1_all.deb ... 153s Unpacking javascript-common (11+nmu1) ... 153s Selecting previously unselected package libblas3:amd64. 153s Preparing to unpack .../30-libblas3_3.12.0-3build1_amd64.deb ... 153s Unpacking libblas3:amd64 (3.12.0-3build1) ... 153s Selecting previously unselected package libgfortran5:amd64. 153s Preparing to unpack .../31-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 153s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 153s Selecting previously unselected package libjs-bootstrap. 153s Preparing to unpack .../32-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 153s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 153s Selecting previously unselected package libjs-jquery. 153s Preparing to unpack .../33-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 153s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 153s Selecting previously unselected package libjs-popper.js. 153s Preparing to unpack .../34-libjs-popper.js_1.16.1+ds-6_all.deb ... 153s Unpacking libjs-popper.js (1.16.1+ds-6) ... 153s Selecting previously unselected package liblapack3:amd64. 153s Preparing to unpack .../35-liblapack3_3.12.0-3build1_amd64.deb ... 153s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 153s Selecting previously unselected package libnorm1t64:amd64. 153s Preparing to unpack .../36-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 153s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 153s Selecting previously unselected package libpgm-5.3-0t64:amd64. 153s Preparing to unpack .../37-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 153s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 153s Selecting previously unselected package libsodium23:amd64. 153s Preparing to unpack .../38-libsodium23_1.0.18-1build3_amd64.deb ... 153s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 153s Selecting previously unselected package libxslt1.1:amd64. 153s Preparing to unpack .../39-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 153s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 153s Selecting previously unselected package libzmq5:amd64. 153s Preparing to unpack .../40-libzmq5_4.3.5-1build2_amd64.deb ... 153s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 153s Selecting previously unselected package node-fortawesome-fontawesome-free. 153s Preparing to unpack .../41-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 153s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 154s Selecting previously unselected package python3-appdirs. 154s Preparing to unpack .../42-python3-appdirs_1.4.4-4_all.deb ... 154s Unpacking python3-appdirs (1.4.4-4) ... 154s Selecting previously unselected package python3-bibtexparser. 154s Preparing to unpack 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154s Selecting previously unselected package python3-filelock. 154s Preparing to unpack .../49-python3-filelock_3.15.4-1_all.deb ... 154s Unpacking python3-filelock (3.15.4-1) ... 154s Selecting previously unselected package python3-itsdangerous. 154s Preparing to unpack .../50-python3-itsdangerous_2.2.0-1_all.deb ... 154s Unpacking python3-itsdangerous (2.2.0-1) ... 154s Selecting previously unselected package python3-werkzeug. 154s Preparing to unpack .../51-python3-werkzeug_3.0.3-1_all.deb ... 154s Unpacking python3-werkzeug (3.0.3-1) ... 154s Selecting previously unselected package python3-flask. 154s Preparing to unpack .../52-python3-flask_3.0.3-1ubuntu1_all.deb ... 154s Unpacking python3-flask (3.0.3-1ubuntu1) ... 154s Selecting previously unselected package python3-greenlet. 154s Preparing to unpack .../53-python3-greenlet_3.0.3-0ubuntu5_amd64.deb ... 154s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 154s Selecting previously unselected package python3-sqlalchemy. 154s Preparing to unpack .../54-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 154s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 154s Selecting previously unselected package python3-flask-sqlalchemy. 154s Preparing to unpack .../55-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 154s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 154s Selecting previously unselected package python3-psutil. 154s Preparing to unpack .../56-python3-psutil_5.9.8-2build2_amd64.deb ... 154s Unpacking python3-psutil (5.9.8-2build2) ... 154s Selecting previously unselected package python3-public. 154s Preparing to unpack .../57-python3-public_4.1.0-1_all.deb ... 154s Unpacking python3-public (4.1.0-1) ... 154s Selecting previously unselected package python3-flufl.lock. 154s Preparing to unpack .../58-python3-flufl.lock_8.1.0-1_all.deb ... 154s Unpacking python3-flufl.lock (8.1.0-1) ... 154s Selecting previously unselected package python3-globus-sdk. 154s Preparing to unpack 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python3-setproctitle:amd64. 156s Preparing to unpack .../70-python3-setproctitle_1.3.3-1build2_amd64.deb ... 156s Unpacking python3-setproctitle:amd64 (1.3.3-1build2) ... 156s Selecting previously unselected package python3-tblib. 156s Preparing to unpack .../71-python3-tblib_3.0.0-5_all.deb ... 156s Unpacking python3-tblib (3.0.0-5) ... 156s Selecting previously unselected package python3-typeguard. 156s Preparing to unpack .../72-python3-typeguard_4.1.5-1_all.deb ... 156s Unpacking python3-typeguard (4.1.5-1) ... 156s Selecting previously unselected package python3-py. 156s Preparing to unpack .../73-python3-py_1.11.0-2_all.deb ... 156s Unpacking python3-py (1.11.0-2) ... 156s Selecting previously unselected package python3-zmq. 156s Preparing to unpack .../74-python3-zmq_24.0.1-5build1_amd64.deb ... 156s Unpacking python3-zmq (24.0.1-5build1) ... 156s Selecting previously unselected package python3-parsl. 156s Preparing to unpack .../75-python3-parsl_2024.05.27+ds-1_all.deb ... 156s Unpacking python3-parsl (2024.05.27+ds-1) ... 156s Selecting previously unselected package python3-pluggy. 156s Preparing to unpack .../76-python3-pluggy_1.5.0-1_all.deb ... 156s Unpacking python3-pluggy (1.5.0-1) ... 156s Selecting previously unselected package python3-pytest. 156s Preparing to unpack .../77-python3-pytest_7.4.4-1_all.deb ... 156s Unpacking python3-pytest (7.4.4-1) ... 156s Selecting previously unselected package python3-tomlkit. 156s Preparing to unpack .../78-python3-tomlkit_0.12.5-1_all.deb ... 156s Unpacking python3-tomlkit (0.12.5-1) ... 156s Selecting previously unselected package python3-tzlocal. 156s Preparing to unpack .../79-python3-tzlocal_5.2-1.1_all.deb ... 156s Unpacking python3-tzlocal (5.2-1.1) ... 156s Selecting previously unselected package qiime. 156s Preparing to unpack .../80-qiime_2024.2.0-1ubuntu1_all.deb ... 156s Unpacking qiime (2024.2.0-1ubuntu1) ... 156s Setting up javascript-common (11+nmu1) ... 156s Setting up python3-iniconfig (1.1.1-2) ... 156s Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 156s Setting up python3-filelock (3.15.4-1) ... 157s Setting up libsodium23:amd64 (1.0.18-1build3) ... 157s Setting up python3-tblib (3.0.0-5) ... 157s Setting up python3-py (1.11.0-2) ... 157s Setting up libjs-popper.js (1.16.1+ds-6) ... 157s Setting up python3-colorama (0.4.6-4) ... 157s Setting up python3-public (4.1.0-1) ... 157s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 157s Setting up python3-bcrypt (4.1.2-1) ... 157s Setting up python3-typeguard (4.1.5-1) ... 157s Setting up python3-itsdangerous (2.2.0-1) ... 157s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 157s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 157s Setting up python3-click (8.1.7-1) ... 158s Setting up python3-networkx (3.2.1-4ubuntu1) ... 159s Setting up python3-psutil (5.9.8-2build2) ... 159s Setting up python3-flufl.lock (8.1.0-1) ... 159s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 159s Setting up python3-decorator (5.1.1-5) ... 159s Setting up libblas3:amd64 (3.12.0-3build1) ... 159s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 159s Setting up python3-packaging (24.0-1) ... 160s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 160s Setting up python3-dill (0.3.8-1) ... 160s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 160s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ... 160s Setting up libmpc3:amd64 (1.3.1-1build1) ... 160s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 160s Setting up python3-setproctitle:amd64 (1.3.3-1build2) ... 160s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 160s Setting up python3-pluggy (1.5.0-1) ... 160s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ... 160s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ... 160s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ... 160s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 160s Setting up python3-dateutil (2.9.0-2) ... 160s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 161s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 161s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 161s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ... 161s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 161s Setting up python3-tzlocal (5.2-1.1) ... 161s Setting up libisl23:amd64 (0.26-3build1) ... 161s Setting up python3-tomlkit (0.12.5-1) ... 161s Setting up python3-appdirs (1.4.4-4) ... 161s Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ... 161s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ... 161s Setting up python3-nacl (1.5.0-4build1) ... 161s Setting up python3-globus-sdk (3.41.0-1) ... 161s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 161s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ... 161s Setting up liblapack3:amd64 (3.12.0-3build1) ... 161s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 161s Setting up libzmq5:amd64 (4.3.5-1build2) ... 161s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 161s Setting up python3-pytest (7.4.4-1) ... 162s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 163s Setting up python3-werkzeug (3.0.3-1) ... 163s Setting up python3-zmq (24.0.1-5build1) ... 163s Setting up python3-numpy (1:1.26.4+ds-10) ... 165s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 165s Setting up python3-lxml:amd64 (5.2.1-1) ... 165s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 166s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 166s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 166s Setting up cpp-13 (13.2.0-23ubuntu4) ... 166s Setting up python3-flask (3.0.3-1ubuntu1) ... 166s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 166s Setting up python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 166s Setting up python3-pandas (2.2.2+dfsg-4) ... 170s Setting up gcc-13 (13.2.0-23ubuntu4) ... 170s Setting up cpp (4:13.2.0-7ubuntu1) ... 170s Setting up python3-flask-sqlalchemy (3.0.3-1) ... 171s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 171s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 171s Setting up python3-parsl (2024.05.27+ds-1) ... 171s Setting up gcc (4:13.2.0-7ubuntu1) ... 171s Setting up qiime (2024.2.0-1ubuntu1) ... 171s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 171s Setting up g++-13 (13.2.0-23ubuntu4) ... 171s Setting up g++ (4:13.2.0-7ubuntu1) ... 171s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 171s Setting up build-essential (12.10ubuntu1) ... 171s Processing triggers for man-db (2.12.1-2) ... 172s Processing triggers for libc-bin (2.39-0ubuntu9) ... 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 174s The following NEW packages will be installed: 174s autopkgtest-satdep 174s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 174s Need to get 0 B/700 B of archives. 174s After this operation, 0 B of additional disk space will be used. 174s Get:1 /tmp/autopkgtest.OnwnC6/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 175s Selecting previously unselected package autopkgtest-satdep. 175s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 86814 files and directories currently installed.) 175s Preparing to unpack .../2-autopkgtest-satdep.deb ... 175s Unpacking autopkgtest-satdep (0) ... 175s Setting up autopkgtest-satdep (0) ... 176s (Reading database ... 86814 files and directories currently installed.) 176s Removing autopkgtest-satdep (0) ... 177s autopkgtest [09:14:48]: test run-unit-test: [----------------------- 177s autopkgtest [09:14:48]: test run-unit-test: -----------------------] 177s run-unit-test SKIP exit status 77 and marked as skippable 177s autopkgtest [09:14:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 178s autopkgtest [09:14:49]: @@@@@@@@@@@@@@@@@@@@ summary 178s run-unit-test SKIP exit status 77 and marked as skippable 183s nova [W] Skipping flock for amd64 183s Creating nova instance adt-oracular-i386-qiime-20240708-091142-juju-7f2275-prod-proposed-migration-environment-2-88b7117f-6cb6-40d9-be58-12c6407c8ac4 from image adt/ubuntu-oracular-amd64-server-20240707.img (UUID a564d08f-b120-4297-9fe1-fa5551c3a09b)...