0s autopkgtest [09:03:35]: starting date and time: 2024-07-08 09:03:35+0000 3s autopkgtest [09:03:38]: git checkout: fd3bed09 nova: allow more retries for quota issues 3s autopkgtest [09:03:38]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8u0k3n12/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade q2-quality-filter --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-44.secgroup --name adt-oracular-i386-q2-quality-filter-20240708-090334-juju-7f2275-prod-proposed-migration-environment-3-fff4efae-8e72-4a62-9ee4-751309c65328 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 560s autopkgtest [09:12:55]: testbed dpkg architecture: amd64 560s autopkgtest [09:12:55]: testbed apt version: 2.9.6 561s autopkgtest [09:12:56]: test architecture: i386 561s autopkgtest [09:12:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 561s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 562s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 562s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 562s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB] 562s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB] 562s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB] 562s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB] 562s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B] 562s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B] 562s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB] 562s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B] 562s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [345 kB] 562s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [199 kB] 562s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B] 562s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B] 562s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B] 562s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B] 563s Fetched 1317 kB in 0s (4085 kB/s) 563s Reading package lists... 566s Reading package lists... 566s Building dependency tree... 566s Reading state information... 567s Calculating upgrade... 567s The following packages will be upgraded: 567s fuse3 libfuse3-3 567s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 567s Need to get 109 kB of archives. 567s After this operation, 4096 B of additional disk space will be used. 567s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 fuse3 amd64 3.14.0-6 [25.5 kB] 567s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfuse3-3 amd64 3.14.0-6 [83.2 kB] 568s Fetched 109 kB in 0s (1195 kB/s) 568s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74464 files and directories currently installed.) 568s Preparing to unpack .../fuse3_3.14.0-6_amd64.deb ... 568s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 568s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 568s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ... 568s Preparing to unpack .../libfuse3-3_3.14.0-6_amd64.deb ... 568s Unpacking libfuse3-3:amd64 (3.14.0-6) over (3.14.0-5build1) ... 568s Setting up libfuse3-3:amd64 (3.14.0-6) ... 568s Setting up fuse3 (3.14.0-6) ... 568s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3' 568s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3' 568s update-initramfs: deferring update (trigger activated) 568s Processing triggers for libc-bin (2.39-0ubuntu9) ... 568s Processing triggers for man-db (2.12.1-2) ... 570s Processing triggers for initramfs-tools (0.142ubuntu29) ... 570s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic 570s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 583s Reading package lists... 583s Building dependency tree... 583s Reading state information... 584s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 584s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 584s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 584s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 584s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 586s Reading package lists... 586s Reading package lists... 586s Building dependency tree... 586s Reading state information... 586s Calculating upgrade... 587s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 587s Reading package lists... 587s Building dependency tree... 587s Reading state information... 588s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 588s autopkgtest [09:13:23]: rebooting testbed after setup commands that affected boot 592s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 612s autopkgtest [09:13:47]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024 613s autopkgtest [09:13:48]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-quality-filter 615s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (dsc) [2421 B] 615s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (tar) [257 kB] 615s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-filter 2024.2.0-1ubuntu1 (diff) [7140 B] 615s gpgv: Signature made Mon Jun 3 19:34:06 2024 UTC 615s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 615s gpgv: issuer "athos.ribeiro@canonical.com" 615s gpgv: Can't check signature: No public key 615s dpkg-source: warning: cannot verify inline signature for ./q2-quality-filter_2024.2.0-1ubuntu1.dsc: no acceptable signature found 616s autopkgtest [09:13:51]: testing package q2-quality-filter version 2024.2.0-1ubuntu1 616s autopkgtest [09:13:51]: build not needed 616s autopkgtest [09:13:51]: test run-unit-test: preparing testbed 620s Note, using file '/tmp/autopkgtest.PAd06y/1-autopkgtest-satdep.dsc' to get the build dependencies 621s Reading package lists... 621s Building dependency tree... 621s Reading state information... 621s Starting pkgProblemResolver with broken count: 0 622s Starting 2 pkgProblemResolver with broken count: 0 622s Done 622s The following NEW packages will be installed: 622s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 622s fonts-glyphicons-halflings g++ g++-13 g++-13-x86-64-linux-gnu 622s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu 622s gcc-x86-64-linux-gnu javascript-common libaec0 libasan8 libatomic1 libblas3 622s libcc1-0 libgcc-13-dev libgfortran5 libgomp1 libhdf5-103-1t64 622s libhdf5-hl-100t64 libhwasan0 libisl23 libitm1 libjs-bootstrap libjs-jquery 622s libjs-jquery-hotkeys libjs-jquery-isonscreen libjs-jquery-metadata 622s libjs-jquery-tablesorter libjs-jquery-throttle-debounce libjs-popper.js 622s liblapack3 liblbfgsb0 liblsan0 liblzf1 libmpc3 libnorm1t64 libopenblas0 622s libopenblas0-pthread libpgm-5.3-0t64 libquadmath0 libsodium23 libssw0 622s libstdc++-13-dev libsz2 libtsan2 libubsan1 libxslt1.1 libyajl2 libzmq5 622s node-fortawesome-fontawesome-free node-normalize.css python3-all 622s python3-appdirs python3-bcrypt python3-bibtexparser python3-biom-format 622s python3-click python3-colorama python3-coverage python3-dateutil 622s python3-decorator python3-dill python3-filelock python3-flask 622s python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 622s python3-greenlet python3-h5py python3-h5py-serial python3-hdmedians 622s python3-ijson python3-iniconfig python3-itsdangerous python3-lxml 622s python3-nacl python3-natsort python3-networkx python3-numpy 622s python3-packaging python3-pandas python3-pandas-lib python3-paramiko 622s python3-parsl python3-pluggy python3-psutil python3-public python3-py 622s python3-pytest python3-pytest-cov python3-scipy python3-setproctitle 622s python3-skbio python3-sqlalchemy python3-tblib python3-tomlkit 622s python3-typeguard python3-tzlocal python3-werkzeug python3-zmq 622s q2-quality-filter q2-types q2templates qiime 622s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. 622s Need to get 132 MB of archives. 622s After this operation, 610 MB of additional disk space will be used. 622s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 622s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] 622s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB] 622s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 622s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 622s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB] 623s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B] 623s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 623s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 623s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB] 623s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB] 623s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB] 623s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB] 623s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB] 623s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB] 623s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB] 623s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB] 623s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB] 623s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB] 623s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB] 623s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB] 623s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB] 623s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 623s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 623s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB] 623s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB] 623s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB] 623s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 623s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 623s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 623s Get:31 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 623s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B] 623s Get:33 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 623s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 623s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB] 623s Get:36 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 623s Get:37 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 623s Get:38 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 623s Get:39 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 623s Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-metadata all 12-4 [6582 B] 623s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB] 623s Get:42 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB] 623s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 623s Get:44 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0-pthread amd64 0.3.27+ds-2 [7185 kB] 623s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 623s Get:46 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 623s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 623s Get:48 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 623s Get:49 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0 amd64 0.3.27+ds-2 [6218 B] 623s Get:50 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 623s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 623s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB] 623s Get:53 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB] 623s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 623s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 623s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 623s Get:57 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B] 623s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 623s Get:59 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 623s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB] 623s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB] 623s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B] 623s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB] 623s Get:64 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB] 623s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB] 623s Get:66 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB] 623s Get:67 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB] 623s Get:68 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 623s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB] 623s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB] 623s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu2 [147 kB] 623s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dill all 0.3.8-1 [83.0 kB] 623s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB] 623s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-itsdangerous all 2.2.0-1 [15.2 kB] 623s Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-werkzeug all 3.0.3-1 [170 kB] 623s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 623s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB] 623s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 623s Get:79 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 623s Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB] 623s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-public all 4.1.0-1 [7052 B] 623s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flufl.lock all 8.1.0-1 [12.4 kB] 623s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-globus-sdk all 3.41.0-1 [225 kB] 623s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB] 623s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 623s Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB] 624s Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-nacl amd64 1.5.0-4build1 [57.9 kB] 624s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 624s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 624s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB] 624s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bcrypt amd64 4.1.2-1 [229 kB] 624s Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 624s Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setproctitle amd64 1.3.3-1build2 [19.0 kB] 624s Get:94 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tblib all 3.0.0-5 [12.9 kB] 624s Get:95 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeguard all 4.1.5-1 [32.7 kB] 624s Get:96 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-py all 1.11.0-2 [72.7 kB] 624s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB] 624s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parsl all 2024.05.27+ds-1 [274 kB] 624s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 624s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB] 624s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B] 624s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB] 624s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skbio amd64 0.6.1-2 [1333 kB] 624s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tomlkit all 0.12.5-1 [37.7 kB] 624s Get:105 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tzlocal all 5.2-1.1 [20.5 kB] 624s Get:106 http://ftpmaster.internal/ubuntu oracular/universe amd64 qiime all 2024.2.0-1ubuntu1 [311 kB] 624s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2templates all 2024.5.0+ds-1 [12.0 kB] 624s Get:108 http://ftpmaster.internal/ubuntu oracular/main amd64 libyajl2 amd64 2.1.0-5build1 [20.2 kB] 624s Get:109 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ijson amd64 3.3.0-1 [36.7 kB] 624s Get:110 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-types all 2024.2.0-1ubuntu1 [5752 kB] 624s Get:111 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-quality-filter all 2024.2.0-1ubuntu1 [23.2 kB] 624s Fetched 132 MB in 1s (100 MB/s) 624s Selecting previously unselected package libjs-jquery. 625s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74466 files and directories currently installed.) 625s Preparing to unpack .../000-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 625s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 625s Selecting previously unselected package libjs-jquery-hotkeys. 625s Preparing to unpack .../001-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... 625s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 625s Selecting previously unselected package gcc-13-base:amd64. 625s Preparing to unpack .../002-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ... 625s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 625s Selecting previously unselected package libisl23:amd64. 625s Preparing to unpack .../003-libisl23_0.26-3build1_amd64.deb ... 625s Unpacking libisl23:amd64 (0.26-3build1) ... 625s Selecting previously unselected package libmpc3:amd64. 625s Preparing to unpack .../004-libmpc3_1.3.1-1build1_amd64.deb ... 625s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 625s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 625s Preparing to unpack .../005-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 625s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 625s Selecting previously unselected package cpp-13. 625s Preparing to unpack .../006-cpp-13_13.2.0-23ubuntu4_amd64.deb ... 625s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 625s Selecting previously unselected package cpp-x86-64-linux-gnu. 625s Preparing to unpack .../007-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 625s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 625s Selecting previously unselected package cpp. 625s Preparing to unpack .../008-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 625s Unpacking cpp (4:13.2.0-7ubuntu1) ... 625s Selecting previously unselected package libcc1-0:amd64. 625s Preparing to unpack .../009-libcc1-0_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking libcc1-0:amd64 (14.1.0-1ubuntu1) ... 625s Selecting previously unselected package libgomp1:amd64. 625s Preparing to unpack .../010-libgomp1_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking libgomp1:amd64 (14.1.0-1ubuntu1) ... 625s Selecting previously unselected package libitm1:amd64. 625s Preparing to unpack .../011-libitm1_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking libitm1:amd64 (14.1.0-1ubuntu1) ... 625s Selecting previously unselected package libatomic1:amd64. 625s Preparing to unpack .../012-libatomic1_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking libatomic1:amd64 (14.1.0-1ubuntu1) ... 625s Selecting previously unselected package libasan8:amd64. 625s Preparing to unpack .../013-libasan8_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking libasan8:amd64 (14.1.0-1ubuntu1) ... 625s Selecting previously unselected package liblsan0:amd64. 625s Preparing to unpack .../014-liblsan0_14.1.0-1ubuntu1_amd64.deb ... 625s Unpacking liblsan0:amd64 (14.1.0-1ubuntu1) ... 626s Selecting previously unselected package libtsan2:amd64. 626s Preparing to unpack .../015-libtsan2_14.1.0-1ubuntu1_amd64.deb ... 626s Unpacking libtsan2:amd64 (14.1.0-1ubuntu1) ... 626s Selecting previously unselected package libubsan1:amd64. 626s Preparing to unpack .../016-libubsan1_14.1.0-1ubuntu1_amd64.deb ... 626s Unpacking libubsan1:amd64 (14.1.0-1ubuntu1) ... 626s Selecting previously unselected package libhwasan0:amd64. 626s Preparing to unpack .../017-libhwasan0_14.1.0-1ubuntu1_amd64.deb ... 626s Unpacking libhwasan0:amd64 (14.1.0-1ubuntu1) ... 626s Selecting previously unselected package libquadmath0:amd64. 626s Preparing to unpack .../018-libquadmath0_14.1.0-1ubuntu1_amd64.deb ... 626s Unpacking libquadmath0:amd64 (14.1.0-1ubuntu1) ... 626s Selecting previously unselected package libgcc-13-dev:amd64. 626s Preparing to unpack .../019-libgcc-13-dev_13.2.0-23ubuntu4_amd64.deb ... 626s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 626s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 626s Preparing to unpack .../020-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 626s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 626s Selecting previously unselected package gcc-13. 626s Preparing to unpack .../021-gcc-13_13.2.0-23ubuntu4_amd64.deb ... 626s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 627s Selecting previously unselected package gcc-x86-64-linux-gnu. 627s Preparing to unpack .../022-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 627s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 627s Selecting previously unselected package gcc. 627s Preparing to unpack .../023-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 627s Unpacking gcc (4:13.2.0-7ubuntu1) ... 627s Selecting previously unselected package libstdc++-13-dev:amd64. 627s Preparing to unpack .../024-libstdc++-13-dev_13.2.0-23ubuntu4_amd64.deb ... 627s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 627s Selecting previously unselected package g++-13-x86-64-linux-gnu. 627s Preparing to unpack .../025-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu4_amd64.deb ... 627s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 627s Selecting previously unselected package g++-13. 627s Preparing to unpack .../026-g++-13_13.2.0-23ubuntu4_amd64.deb ... 627s Unpacking g++-13 (13.2.0-23ubuntu4) ... 627s Selecting previously unselected package g++-x86-64-linux-gnu. 627s Preparing to unpack .../027-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 627s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 627s Selecting previously unselected package g++. 627s Preparing to unpack .../028-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 627s Unpacking g++ (4:13.2.0-7ubuntu1) ... 627s Selecting previously unselected package build-essential. 627s Preparing to unpack .../029-build-essential_12.10ubuntu1_amd64.deb ... 627s Unpacking build-essential (12.10ubuntu1) ... 627s Selecting previously unselected package fonts-glyphicons-halflings. 627s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 627s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 627s Selecting previously unselected package javascript-common. 627s Preparing to unpack .../031-javascript-common_11+nmu1_all.deb ... 627s Unpacking javascript-common (11+nmu1) ... 627s Selecting previously unselected package libaec0:amd64. 627s Preparing to unpack .../032-libaec0_1.1.3-1_amd64.deb ... 627s Unpacking libaec0:amd64 (1.1.3-1) ... 627s Selecting previously unselected package libblas3:amd64. 627s Preparing to unpack .../033-libblas3_3.12.0-3build1_amd64.deb ... 627s Unpacking libblas3:amd64 (3.12.0-3build1) ... 628s Selecting previously unselected package libgfortran5:amd64. 628s Preparing to unpack .../034-libgfortran5_14.1.0-1ubuntu1_amd64.deb ... 628s Unpacking libgfortran5:amd64 (14.1.0-1ubuntu1) ... 628s Selecting previously unselected package libsz2:amd64. 628s Preparing to unpack .../035-libsz2_1.1.3-1_amd64.deb ... 628s Unpacking libsz2:amd64 (1.1.3-1) ... 628s Selecting previously unselected package libhdf5-103-1t64:amd64. 628s Preparing to unpack .../036-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 628s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 628s Selecting previously unselected package libhdf5-hl-100t64:amd64. 628s Preparing to unpack .../037-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 628s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 628s Selecting previously unselected package libjs-bootstrap. 628s Preparing to unpack .../038-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 628s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 628s Selecting previously unselected package libjs-jquery-metadata. 628s Preparing to unpack .../039-libjs-jquery-metadata_12-4_all.deb ... 628s Unpacking libjs-jquery-metadata (12-4) ... 628s Selecting previously unselected package libjs-jquery-tablesorter. 628s Preparing to unpack .../040-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-3_all.deb ... 628s Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 628s Selecting previously unselected package libjs-jquery-throttle-debounce. 628s Preparing to unpack .../041-libjs-jquery-throttle-debounce_1.1+dfsg.1-2_all.deb ... 628s Unpacking libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 628s Selecting previously unselected package libjs-popper.js. 628s Preparing to unpack .../042-libjs-popper.js_1.16.1+ds-6_all.deb ... 628s Unpacking libjs-popper.js (1.16.1+ds-6) ... 628s Selecting previously unselected package libopenblas0-pthread:amd64. 628s Preparing to unpack .../043-libopenblas0-pthread_0.3.27+ds-2_amd64.deb ... 628s Unpacking libopenblas0-pthread:amd64 (0.3.27+ds-2) ... 628s Selecting previously unselected package liblapack3:amd64. 628s Preparing to unpack .../044-liblapack3_3.12.0-3build1_amd64.deb ... 628s Unpacking liblapack3:amd64 (3.12.0-3build1) ... 628s Selecting previously unselected package liblbfgsb0:amd64. 628s Preparing to unpack .../045-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ... 628s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 628s Selecting previously unselected package liblzf1:amd64. 628s Preparing to unpack .../046-liblzf1_3.6-4_amd64.deb ... 628s Unpacking liblzf1:amd64 (3.6-4) ... 628s Selecting previously unselected package libnorm1t64:amd64. 628s Preparing to unpack .../047-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 628s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 628s Selecting previously unselected package libopenblas0:amd64. 628s Preparing to unpack .../048-libopenblas0_0.3.27+ds-2_amd64.deb ... 628s Unpacking libopenblas0:amd64 (0.3.27+ds-2) ... 628s Selecting previously unselected package libpgm-5.3-0t64:amd64. 629s Preparing to unpack .../049-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 629s Unpacking libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 629s Selecting previously unselected package libsodium23:amd64. 629s Preparing to unpack .../050-libsodium23_1.0.18-1build3_amd64.deb ... 629s Unpacking libsodium23:amd64 (1.0.18-1build3) ... 629s Selecting previously unselected package libssw0:amd64. 629s Preparing to unpack .../051-libssw0_1.1-14build1_amd64.deb ... 629s Unpacking libssw0:amd64 (1.1-14build1) ... 629s Selecting previously unselected package libxslt1.1:amd64. 629s Preparing to unpack .../052-libxslt1.1_1.1.39-0exp1build1_amd64.deb ... 629s Unpacking libxslt1.1:amd64 (1.1.39-0exp1build1) ... 629s Selecting previously unselected package libzmq5:amd64. 629s Preparing to unpack .../053-libzmq5_4.3.5-1build2_amd64.deb ... 629s Unpacking libzmq5:amd64 (4.3.5-1build2) ... 629s Selecting previously unselected package node-fortawesome-fontawesome-free. 629s Preparing to unpack .../054-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 629s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 629s Selecting previously unselected package node-normalize.css. 629s Preparing to unpack .../055-node-normalize.css_8.0.1-5_all.deb ... 629s Unpacking node-normalize.css (8.0.1-5) ... 629s Selecting previously unselected package python3-all. 629s Preparing to unpack .../056-python3-all_3.12.3-0ubuntu1_amd64.deb ... 629s Unpacking python3-all (3.12.3-0ubuntu1) ... 629s Selecting previously unselected package python3-appdirs. 629s Preparing to unpack .../057-python3-appdirs_1.4.4-4_all.deb ... 629s Unpacking python3-appdirs (1.4.4-4) ... 629s Selecting previously unselected package python3-bibtexparser. 629s Preparing to unpack .../058-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 629s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 629s Selecting previously unselected package python3-numpy. 629s Preparing to unpack .../059-python3-numpy_1%3a1.26.4+ds-10_amd64.deb ... 629s Unpacking python3-numpy (1:1.26.4+ds-10) ... 630s Selecting previously unselected package python3-h5py-serial. 630s Preparing to unpack .../060-python3-h5py-serial_3.10.0-1ubuntu3_amd64.deb ... 630s Unpacking python3-h5py-serial (3.10.0-1ubuntu3) ... 630s Selecting previously unselected package python3-h5py. 630s Preparing to unpack .../061-python3-h5py_3.10.0-1ubuntu3_all.deb ... 630s Unpacking python3-h5py (3.10.0-1ubuntu3) ... 630s Selecting previously unselected package python3-colorama. 630s Preparing to unpack .../062-python3-colorama_0.4.6-4_all.deb ... 630s Unpacking python3-colorama (0.4.6-4) ... 630s Selecting previously unselected package python3-click. 630s Preparing to unpack .../063-python3-click_8.1.7-1_all.deb ... 630s Unpacking python3-click (8.1.7-1) ... 630s Selecting previously unselected package python3-dateutil. 630s Preparing to unpack .../064-python3-dateutil_2.9.0-2_all.deb ... 630s Unpacking python3-dateutil (2.9.0-2) ... 630s Selecting previously unselected package python3-pandas-lib:amd64. 630s Preparing to unpack .../065-python3-pandas-lib_2.2.2+dfsg-4_amd64.deb ... 630s Unpacking python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 630s Selecting previously unselected package python3-pandas. 630s Preparing to unpack .../066-python3-pandas_2.2.2+dfsg-4_all.deb ... 630s Unpacking python3-pandas (2.2.2+dfsg-4) ... 630s Selecting previously unselected package python3-decorator. 630s Preparing to unpack .../067-python3-decorator_5.1.1-5_all.deb ... 630s Unpacking python3-decorator (5.1.1-5) ... 630s Selecting previously unselected package python3-scipy. 630s Preparing to unpack .../068-python3-scipy_1.12.0-2_amd64.deb ... 630s Unpacking python3-scipy (1.12.0-2) ... 631s Selecting previously unselected package python3-biom-format. 631s Preparing to unpack .../069-python3-biom-format_2.1.16-1_amd64.deb ... 631s Unpacking python3-biom-format (2.1.16-1) ... 631s Selecting previously unselected package python3-coverage. 631s Preparing to unpack .../070-python3-coverage_7.4.4+dfsg1-0ubuntu2_amd64.deb ... 631s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 631s Selecting previously unselected package python3-dill. 631s Preparing to unpack .../071-python3-dill_0.3.8-1_all.deb ... 631s Unpacking python3-dill (0.3.8-1) ... 631s Selecting previously unselected package python3-filelock. 631s Preparing to unpack .../072-python3-filelock_3.15.4-1_all.deb ... 631s Unpacking python3-filelock (3.15.4-1) ... 631s Selecting previously unselected package python3-itsdangerous. 631s Preparing to unpack .../073-python3-itsdangerous_2.2.0-1_all.deb ... 631s Unpacking python3-itsdangerous (2.2.0-1) ... 631s Selecting previously unselected package python3-werkzeug. 631s Preparing to unpack .../074-python3-werkzeug_3.0.3-1_all.deb ... 631s Unpacking python3-werkzeug (3.0.3-1) ... 631s Selecting previously unselected package python3-flask. 631s Preparing to unpack .../075-python3-flask_3.0.3-1ubuntu1_all.deb ... 631s Unpacking python3-flask (3.0.3-1ubuntu1) ... 631s Selecting previously unselected package python3-greenlet. 631s Preparing to unpack .../076-python3-greenlet_3.0.3-0ubuntu5_amd64.deb ... 631s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 631s Selecting previously unselected package python3-sqlalchemy. 631s Preparing to unpack .../077-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 631s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 632s Selecting previously unselected package python3-flask-sqlalchemy. 632s Preparing to unpack .../078-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 632s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 632s Selecting previously unselected package python3-psutil. 632s Preparing to unpack .../079-python3-psutil_5.9.8-2build2_amd64.deb ... 632s Unpacking python3-psutil (5.9.8-2build2) ... 632s Selecting previously unselected package python3-public. 632s Preparing to unpack .../080-python3-public_4.1.0-1_all.deb ... 632s Unpacking python3-public (4.1.0-1) ... 632s Selecting previously unselected package python3-flufl.lock. 632s Preparing to unpack .../081-python3-flufl.lock_8.1.0-1_all.deb ... 632s Unpacking python3-flufl.lock (8.1.0-1) ... 632s Selecting previously unselected package python3-globus-sdk. 632s Preparing to unpack .../082-python3-globus-sdk_3.41.0-1_all.deb ... 632s Unpacking python3-globus-sdk (3.41.0-1) ... 632s Selecting previously unselected package python3-hdmedians. 632s Preparing to unpack .../083-python3-hdmedians_0.14.2-5.1build1_amd64.deb ... 632s Unpacking python3-hdmedians (0.14.2-5.1build1) ... 632s Selecting previously unselected package python3-iniconfig. 632s Preparing to unpack .../084-python3-iniconfig_1.1.1-2_all.deb ... 632s Unpacking python3-iniconfig (1.1.1-2) ... 632s Selecting previously unselected package python3-lxml:amd64. 632s Preparing to unpack .../085-python3-lxml_5.2.1-1_amd64.deb ... 632s Unpacking python3-lxml:amd64 (5.2.1-1) ... 632s Selecting previously unselected package python3-nacl. 632s Preparing to unpack .../086-python3-nacl_1.5.0-4build1_amd64.deb ... 632s Unpacking python3-nacl (1.5.0-4build1) ... 632s Selecting previously unselected package python3-natsort. 632s Preparing to unpack .../087-python3-natsort_8.0.2-2_all.deb ... 632s Unpacking python3-natsort (8.0.2-2) ... 632s Selecting previously unselected package python3-networkx. 632s Preparing to unpack .../088-python3-networkx_3.2.1-4ubuntu1_all.deb ... 632s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 633s Selecting previously unselected package python3-packaging. 633s Preparing to unpack .../089-python3-packaging_24.0-1_all.deb ... 633s Unpacking python3-packaging (24.0-1) ... 633s Selecting previously unselected package python3-bcrypt. 633s Preparing to unpack .../090-python3-bcrypt_4.1.2-1_amd64.deb ... 633s Unpacking python3-bcrypt (4.1.2-1) ... 633s Selecting previously unselected package python3-paramiko. 633s Preparing to unpack .../091-python3-paramiko_3.4.0-1ubuntu1_all.deb ... 633s Unpacking python3-paramiko (3.4.0-1ubuntu1) ... 633s Selecting previously unselected package python3-setproctitle:amd64. 633s Preparing to unpack .../092-python3-setproctitle_1.3.3-1build2_amd64.deb ... 633s Unpacking python3-setproctitle:amd64 (1.3.3-1build2) ... 633s Selecting previously unselected package python3-tblib. 633s Preparing to unpack .../093-python3-tblib_3.0.0-5_all.deb ... 633s Unpacking python3-tblib (3.0.0-5) ... 633s Selecting previously unselected package python3-typeguard. 633s Preparing to unpack .../094-python3-typeguard_4.1.5-1_all.deb ... 633s Unpacking python3-typeguard (4.1.5-1) ... 633s Selecting previously unselected package python3-py. 633s Preparing to unpack .../095-python3-py_1.11.0-2_all.deb ... 633s Unpacking python3-py (1.11.0-2) ... 633s Selecting previously unselected package python3-zmq. 633s Preparing to unpack .../096-python3-zmq_24.0.1-5build1_amd64.deb ... 633s Unpacking python3-zmq (24.0.1-5build1) ... 633s Selecting previously unselected package python3-parsl. 633s Preparing to unpack .../097-python3-parsl_2024.05.27+ds-1_all.deb ... 633s Unpacking python3-parsl (2024.05.27+ds-1) ... 633s Selecting previously unselected package python3-pluggy. 633s Preparing to unpack .../098-python3-pluggy_1.5.0-1_all.deb ... 633s Unpacking python3-pluggy (1.5.0-1) ... 633s Selecting previously unselected package python3-pytest. 633s Preparing to unpack .../099-python3-pytest_7.4.4-1_all.deb ... 633s Unpacking python3-pytest (7.4.4-1) ... 633s Selecting previously unselected package libjs-jquery-isonscreen. 633s Preparing to unpack .../100-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ... 633s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ... 633s Selecting previously unselected package python3-pytest-cov. 634s Preparing to unpack .../101-python3-pytest-cov_5.0.0-1_all.deb ... 634s Unpacking python3-pytest-cov (5.0.0-1) ... 634s Selecting previously unselected package python3-skbio. 634s Preparing to unpack .../102-python3-skbio_0.6.1-2_amd64.deb ... 634s Unpacking python3-skbio (0.6.1-2) ... 634s Selecting previously unselected package python3-tomlkit. 634s Preparing to unpack .../103-python3-tomlkit_0.12.5-1_all.deb ... 634s Unpacking python3-tomlkit (0.12.5-1) ... 634s Selecting previously unselected package python3-tzlocal. 634s Preparing to unpack .../104-python3-tzlocal_5.2-1.1_all.deb ... 634s Unpacking python3-tzlocal (5.2-1.1) ... 634s Selecting previously unselected package qiime. 634s Preparing to unpack .../105-qiime_2024.2.0-1ubuntu1_all.deb ... 634s Unpacking qiime (2024.2.0-1ubuntu1) ... 634s Selecting previously unselected package q2templates. 634s Preparing to unpack .../106-q2templates_2024.5.0+ds-1_all.deb ... 634s Unpacking q2templates (2024.5.0+ds-1) ... 634s Selecting previously unselected package libyajl2:amd64. 634s Preparing to unpack .../107-libyajl2_2.1.0-5build1_amd64.deb ... 634s Unpacking libyajl2:amd64 (2.1.0-5build1) ... 634s Selecting previously unselected package python3-ijson. 634s Preparing to unpack .../108-python3-ijson_3.3.0-1_amd64.deb ... 634s Unpacking python3-ijson (3.3.0-1) ... 634s Selecting previously unselected package q2-types. 634s Preparing to unpack .../109-q2-types_2024.2.0-1ubuntu1_all.deb ... 634s Unpacking q2-types (2024.2.0-1ubuntu1) ... 634s Selecting previously unselected package q2-quality-filter. 634s Preparing to unpack .../110-q2-quality-filter_2024.2.0-1ubuntu1_all.deb ... 634s Unpacking q2-quality-filter (2024.2.0-1ubuntu1) ... 634s Setting up javascript-common (11+nmu1) ... 635s Setting up python3-iniconfig (1.1.1-2) ... 635s Setting up libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 635s Setting up python3-filelock (3.15.4-1) ... 635s Setting up libsodium23:amd64 (1.0.18-1build3) ... 635s Setting up python3-tblib (3.0.0-5) ... 635s Setting up python3-py (1.11.0-2) ... 635s Setting up libjs-popper.js (1.16.1+ds-6) ... 635s Setting up python3-colorama (0.4.6-4) ... 635s Setting up python3-public (4.1.0-1) ... 636s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 636s Setting up python3-bcrypt (4.1.2-1) ... 636s Setting up python3-typeguard (4.1.5-1) ... 636s Setting up libyajl2:amd64 (2.1.0-5build1) ... 636s Setting up python3-itsdangerous (2.2.0-1) ... 636s Setting up python3-all (3.12.3-0ubuntu1) ... 636s Setting up python3-coverage (7.4.4+dfsg1-0ubuntu2) ... 636s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 636s Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... 636s Setting up libgomp1:amd64 (14.1.0-1ubuntu1) ... 636s Setting up python3-click (8.1.7-1) ... 637s Setting up python3-networkx (3.2.1-4ubuntu1) ... 638s Setting up libaec0:amd64 (1.1.3-1) ... 638s Setting up python3-psutil (5.9.8-2build2) ... 639s Setting up python3-natsort (8.0.2-2) ... 639s Setting up python3-flufl.lock (8.1.0-1) ... 639s Setting up libpgm-5.3-0t64:amd64 (5.3.128~dfsg-2.1build1) ... 639s Setting up python3-decorator (5.1.1-5) ... 639s Setting up libblas3:amd64 (3.12.0-3build1) ... 639s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 639s Setting up python3-packaging (24.0-1) ... 639s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu4) ... 639s Setting up python3-dill (0.3.8-1) ... 640s Setting up liblzf1:amd64 (3.6-4) ... 640s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 640s Setting up libquadmath0:amd64 (14.1.0-1ubuntu1) ... 640s Setting up libmpc3:amd64 (1.3.1-1build1) ... 640s Setting up libatomic1:amd64 (14.1.0-1ubuntu1) ... 640s Setting up python3-setproctitle:amd64 (1.3.3-1build2) ... 640s Setting up libgfortran5:amd64 (14.1.0-1ubuntu1) ... 640s Setting up python3-pluggy (1.5.0-1) ... 640s Setting up libubsan1:amd64 (14.1.0-1ubuntu1) ... 640s Setting up libhwasan0:amd64 (14.1.0-1ubuntu1) ... 640s Setting up libasan8:amd64 (14.1.0-1ubuntu1) ... 640s Setting up libxslt1.1:amd64 (1.1.39-0exp1build1) ... 640s Setting up python3-dateutil (2.9.0-2) ... 640s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 641s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 641s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 641s Setting up libtsan2:amd64 (14.1.0-1ubuntu1) ... 641s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 641s Setting up python3-tzlocal (5.2-1.1) ... 641s Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 641s Setting up libisl23:amd64 (0.26-3build1) ... 641s Setting up python3-tomlkit (0.12.5-1) ... 641s Setting up node-normalize.css (8.0.1-5) ... 641s Setting up python3-appdirs (1.4.4-4) ... 641s Setting up libssw0:amd64 (1.1-14build1) ... 641s Setting up libcc1-0:amd64 (14.1.0-1ubuntu1) ... 641s Setting up liblsan0:amd64 (14.1.0-1ubuntu1) ... 641s Setting up python3-nacl (1.5.0-4build1) ... 641s Setting up python3-globus-sdk (3.41.0-1) ... 642s Setting up libsz2:amd64 (1.1.3-1) ... 642s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 642s Setting up libitm1:amd64 (14.1.0-1ubuntu1) ... 642s Setting up liblapack3:amd64 (3.12.0-3build1) ... 642s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 642s Setting up libopenblas0-pthread:amd64 (0.3.27+ds-2) ... 642s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 642s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 642s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode 642s Setting up libzmq5:amd64 (4.3.5-1build2) ... 642s Setting up python3-ijson (3.3.0-1) ... 642s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 642s Setting up python3-pytest (7.4.4-1) ... 642s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 644s Setting up python3-werkzeug (3.0.3-1) ... 644s Setting up python3-zmq (24.0.1-5build1) ... 645s Setting up libjs-jquery-metadata (12-4) ... 645s Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... 645s Setting up python3-numpy (1:1.26.4+ds-10) ... 647s Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... 647s Setting up python3-hdmedians (0.14.2-5.1build1) ... 647s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu4) ... 647s Setting up libopenblas0:amd64 (0.3.27+ds-2) ... 647s Setting up python3-lxml:amd64 (5.2.1-1) ... 647s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 648s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 648s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu4) ... 648s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 648s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 648s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 648s Setting up python3-scipy (1.12.0-2) ... 652s Setting up cpp-13 (13.2.0-23ubuntu4) ... 652s Setting up python3-flask (3.0.3-1ubuntu1) ... 652s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 652s Setting up python3-pandas-lib:amd64 (2.2.2+dfsg-4) ... 652s Setting up python3-h5py-serial (3.10.0-1ubuntu3) ... 652s Setting up python3-pytest-cov (5.0.0-1) ... 653s Setting up python3-pandas (2.2.2+dfsg-4) ... 659s Setting up python3-h5py (3.10.0-1ubuntu3) ... 659s Setting up gcc-13 (13.2.0-23ubuntu4) ... 659s Setting up cpp (4:13.2.0-7ubuntu1) ... 659s Setting up python3-flask-sqlalchemy (3.0.3-1) ... 659s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ... 659s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 659s Setting up q2templates (2024.5.0+ds-1) ... 659s Setting up python3-parsl (2024.05.27+ds-1) ... 660s Setting up gcc (4:13.2.0-7ubuntu1) ... 660s Setting up qiime (2024.2.0-1ubuntu1) ... 660s Setting up python3-biom-format (2.1.16-1) ... 661s Setting up python3-skbio (0.6.1-2) ... 662s Setting up q2-types (2024.2.0-1ubuntu1) ... 662s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 662s Setting up q2-quality-filter (2024.2.0-1ubuntu1) ... 662s Setting up g++-13 (13.2.0-23ubuntu4) ... 662s Setting up g++ (4:13.2.0-7ubuntu1) ... 662s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 662s Setting up build-essential (12.10ubuntu1) ... 662s Processing triggers for man-db (2.12.1-2) ... 663s Processing triggers for libc-bin (2.39-0ubuntu9) ... 664s Reading package lists... 665s Building dependency tree... 665s Reading state information... 665s Starting pkgProblemResolver with broken count: 0 665s Starting 2 pkgProblemResolver with broken count: 0 665s Done 666s The following NEW packages will be installed: 666s autopkgtest-satdep 666s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 666s Need to get 0 B/696 B of archives. 666s After this operation, 0 B of additional disk space will be used. 666s Get:1 /tmp/autopkgtest.PAd06y/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 666s Selecting previously unselected package autopkgtest-satdep. 666s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 90231 files and directories currently installed.) 666s Preparing to unpack .../2-autopkgtest-satdep.deb ... 666s Unpacking autopkgtest-satdep (0) ... 666s Setting up autopkgtest-satdep (0) ... 669s (Reading database ... 90231 files and directories currently installed.) 669s Removing autopkgtest-satdep (0) ... 670s autopkgtest [09:14:45]: test run-unit-test: [----------------------- 670s ============================= test session starts ============================== 670s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 670s cachedir: .pytest_cache 670s rootdir: /tmp/autopkgtest.PAd06y/autopkgtest_tmp 670s plugins: cov-5.0.0, typeguard-4.1.5 680s collecting ... collected 11 items 680s 680s q2_quality_filter/test/test_filter.py::FilterTests::test_q_score FAILED [ 9%] 681s q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_all_dropped FAILED [ 18%] 681s q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_numeric_ids FAILED [ 27%] 681s q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_real FAILED [ 36%] 682s q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_real_joined FAILED [ 45%] 682s q2_quality_filter/test/test_filter.py::FilterTests::test_read_fastq_seqs PASSED [ 54%] 682s q2_quality_filter/test/test_filter.py::FilterTests::test_runs_of_ones PASSED [ 63%] 682s q2_quality_filter/test/test_filter.py::FilterTests::test_truncate PASSED [ 72%] 682s q2_quality_filter/test/test_filter.py::TransformerTests::test_numeric_ids PASSED [ 81%] 682s q2_quality_filter/test/test_filter.py::TransformerTests::test_stats_to_metadata PASSED [ 90%] 682s q2_quality_filter/test/test_filter.py::TestUsageExamples::test_examples SKIPPED [100%] 682s 682s =================================== FAILURES =================================== 682s ___________________________ FilterTests.test_q_score ___________________________ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c485f50> 682s 682s def __str__(self): 682s """Return the string representation of the path, suitable for 682s passing to system calls.""" 682s try: 682s > return self._str 682s E AttributeError: 'ProvenancePath' object has no attribute '_str' 682s 682s /usr/lib/python3.12/pathlib.py:441: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c485f50> 682s 682s @property 682s def drive(self): 682s """The drive prefix (letter or UNC path), if any.""" 682s try: 682s > return self._drv 682s E AttributeError: 'ProvenancePath' object has no attribute '_drv' 682s 682s /usr/lib/python3.12/pathlib.py:555: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = 682s 682s def test_q_score(self): 682s ar = Artifact.load(self.get_data_path('simple.qza')) 682s with redirected_stdio(stdout=os.devnull): 682s > obs_drop_ambig_ar, stats_ar = self.plugin.methods['q_score']( 682s ar, quality_window=2, min_quality=20, min_length_fraction=0.25) 682s 682s q2_quality_filter/test/test_filter.py:110: 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s /usr/lib/python3/dist-packages/decorator.py:232: in fun 682s return caller(func, *(extras + args), **kw) 682s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable 682s provenance = self._ProvCaptureCls( 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__ 682s super().__init__() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__ 682s self._build_paths() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths 682s self.path = qiime2.core.path.ProvenancePath() 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__ 682s return cls.__new(path) 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new 682s self._destructor = weakref.finalize(self, self._destruct, str(self)) 682s /usr/lib/python3.12/pathlib.py:443: in __str__ 682s self._str = self._format_parsed_parts(self.drive, self.root, 682s /usr/lib/python3.12/pathlib.py:557: in drive 682s self._load_parts() 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c485f50> 682s 682s def _load_parts(self): 682s > paths = self._raw_paths 682s E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths' 682s 682s /usr/lib/python3.12/pathlib.py:408: AttributeError 682s _____________________ FilterTests.test_q_score_all_dropped _____________________ 682s 682s def __str__(self): 682s """Return the string representation of the path, suitable for 682s passing to system calls.""" 682s try: 682s > return self._str 682s E AttributeError: 'ProvenancePath' object has no attribute '_str' 682s 682s /usr/lib/python3.12/pathlib.py:441: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s @property 682s def drive(self): 682s """The drive prefix (letter or UNC path), if any.""" 682s try: 682s > return self._drv 682s E AttributeError: 'ProvenancePath' object has no attribute '_drv' 682s 682s /usr/lib/python3.12/pathlib.py:555: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = 682s 682s def test_q_score_all_dropped(self): 682s ar = Artifact.load(self.get_data_path('simple.qza')) 682s 682s with self.assertRaisesRegex(ValueError, "filtered out"): 682s with redirected_stdio(stdout=os.devnull): 682s > self.plugin.methods['q_score'](ar, min_quality=50) 682s 682s q2_quality_filter/test/test_filter.py:88: 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s /usr/lib/python3/dist-packages/decorator.py:232: in fun 682s return caller(func, *(extras + args), **kw) 682s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable 682s provenance = self._ProvCaptureCls( 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__ 682s super().__init__() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__ 682s self._build_paths() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths 682s self.path = qiime2.core.path.ProvenancePath() 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__ 682s return cls.__new(path) 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new 682s self._destructor = weakref.finalize(self, self._destruct, str(self)) 682s /usr/lib/python3.12/pathlib.py:443: in __str__ 682s self._str = self._format_parsed_parts(self.drive, self.root, 682s /usr/lib/python3.12/pathlib.py:557: in drive 682s self._load_parts() 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s 682s def _load_parts(self): 682s > paths = self._raw_paths 682s E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths' 682s 682s /usr/lib/python3.12/pathlib.py:408: AttributeError 682s _____________________ FilterTests.test_q_score_numeric_ids _____________________ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c3cc750> 682s 682s def __str__(self): 682s """Return the string representation of the path, suitable for 682s passing to system calls.""" 682s try: 682s > return self._str 682s E AttributeError: 'ProvenancePath' object has no attribute '_str' 682s 682s /usr/lib/python3.12/pathlib.py:441: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c3cc750> 682s 682s @property 682s def drive(self): 682s """The drive prefix (letter or UNC path), if any.""" 682s try: 682s > return self._drv 682s E AttributeError: 'ProvenancePath' object has no attribute '_drv' 682s 682s /usr/lib/python3.12/pathlib.py:555: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = 682s 682s def test_q_score_numeric_ids(self): 682s ar = Artifact.load(self.get_data_path('numeric_ids.qza')) 682s exp_sids = {'00123', '0.4560'} 682s 682s with redirected_stdio(stdout=os.devnull): 682s > obs_ar, stats_ar = self.plugin.methods['q_score']( 682s ar, min_quality=20) 682s 682s q2_quality_filter/test/test_filter.py:95: 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s /usr/lib/python3/dist-packages/decorator.py:232: in fun 682s return caller(func, *(extras + args), **kw) 682s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable 682s provenance = self._ProvCaptureCls( 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__ 682s super().__init__() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__ 682s self._build_paths() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths 682s self.path = qiime2.core.path.ProvenancePath() 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__ 682s return cls.__new(path) 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new 682s self._destructor = weakref.finalize(self, self._destruct, str(self)) 682s /usr/lib/python3.12/pathlib.py:443: in __str__ 682s self._str = self._format_parsed_parts(self.drive, self.root, 682s /usr/lib/python3.12/pathlib.py:557: in drive 682s self._load_parts() 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c3cc750> 682s 682s def _load_parts(self): 682s > paths = self._raw_paths 682s E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths' 682s 682s /usr/lib/python3.12/pathlib.py:408: AttributeError 682s ________________________ FilterTests.test_q_score_real _________________________ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c413dd0> 682s 682s def __str__(self): 682s """Return the string representation of the path, suitable for 682s passing to system calls.""" 682s try: 682s > return self._str 682s E AttributeError: 'ProvenancePath' object has no attribute '_str' 682s 682s /usr/lib/python3.12/pathlib.py:441: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c413dd0> 682s 682s @property 682s def drive(self): 682s """The drive prefix (letter or UNC path), if any.""" 682s try: 682s > return self._drv 682s E AttributeError: 'ProvenancePath' object has no attribute '_drv' 682s 682s /usr/lib/python3.12/pathlib.py:555: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = 682s 682s def test_q_score_real(self): 682s ar = Artifact.load(self.get_data_path('real_data.qza')) 682s with redirected_stdio(stdout=os.devnull): 682s > obs_ar, stats_ar = self.plugin.methods['q_score']( 682s ar, min_quality=40, min_length_fraction=0.24) 682s 682s q2_quality_filter/test/test_filter.py:163: 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s /usr/lib/python3/dist-packages/decorator.py:232: in fun 682s return caller(func, *(extras + args), **kw) 682s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable 682s provenance = self._ProvCaptureCls( 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__ 682s super().__init__() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__ 682s self._build_paths() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths 682s self.path = qiime2.core.path.ProvenancePath() 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__ 682s return cls.__new(path) 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new 682s self._destructor = weakref.finalize(self, self._destruct, str(self)) 682s /usr/lib/python3.12/pathlib.py:443: in __str__ 682s self._str = self._format_parsed_parts(self.drive, self.root, 682s /usr/lib/python3.12/pathlib.py:557: in drive 682s self._load_parts() 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c413dd0> 682s 682s def _load_parts(self): 682s > paths = self._raw_paths 682s E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths' 682s 682s /usr/lib/python3.12/pathlib.py:408: AttributeError 682s _____________________ FilterTests.test_q_score_real_joined _____________________ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c5d5450> 682s 682s def __str__(self): 682s """Return the string representation of the path, suitable for 682s passing to system calls.""" 682s try: 682s > return self._str 682s E AttributeError: 'ProvenancePath' object has no attribute '_str' 682s 682s /usr/lib/python3.12/pathlib.py:441: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c5d5450> 682s 682s @property 682s def drive(self): 682s """The drive prefix (letter or UNC path), if any.""" 682s try: 682s > return self._drv 682s E AttributeError: 'ProvenancePath' object has no attribute '_drv' 682s 682s /usr/lib/python3.12/pathlib.py:555: AttributeError 682s 682s During handling of the above exception, another exception occurred: 682s 682s self = 682s 682s def test_q_score_real_joined(self): 682s ar = Artifact.load(self.get_data_path('real_data_joined.qza')) 682s with redirected_stdio(stdout=os.devnull): 682s > obs_ar, stats_ar = self.plugin.methods['q_score']( 682s ar, min_quality=40, min_length_fraction=0.24) 682s 682s q2_quality_filter/test/test_filter.py:248: 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s /usr/lib/python3/dist-packages/decorator.py:232: in fun 682s return caller(func, *(extras + args), **kw) 682s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable 682s provenance = self._ProvCaptureCls( 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__ 682s super().__init__() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__ 682s self._build_paths() 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths 682s self.path = qiime2.core.path.ProvenancePath() 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__ 682s return cls.__new(path) 682s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new 682s self._destructor = weakref.finalize(self, self._destruct, str(self)) 682s /usr/lib/python3.12/pathlib.py:443: in __str__ 682s self._str = self._format_parsed_parts(self.drive, self.root, 682s /usr/lib/python3.12/pathlib.py:557: in drive 682s self._load_parts() 682s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 682s 682s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x727e9c5d5450> 682s 682s def _load_parts(self): 682s > paths = self._raw_paths 682s E AttributeError: 'ProvenancePath' object has no attribute '_raw_paths' 682s 682s /usr/lib/python3.12/pathlib.py:408: AttributeError 682s =============================== warnings summary =============================== 682s ../../../usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13 682s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 682s import pkg_resources 682s 682s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 682s 682s ---------- coverage: platform linux, python 3.12.4-final-0 ----------- 682s Name Stmts Miss Cover 682s ----------------------------------------------------------- 682s q2_quality_filter/__init__.py 5 0 100% 682s q2_quality_filter/_examples.py 6 4 33% 682s q2_quality_filter/_filter.py 90 64 29% 682s q2_quality_filter/_format.py 8 4 50% 682s q2_quality_filter/_transformer.py 20 4 80% 682s q2_quality_filter/_type.py 2 0 100% 682s q2_quality_filter/_version.py 4 0 100% 682s q2_quality_filter/plugin_setup.py 20 0 100% 682s q2_quality_filter/test/__init__.py 0 0 100% 682s q2_quality_filter/test/test_filter.py 146 58 60% 682s ----------------------------------------------------------- 682s TOTAL 301 134 55% 682s 682s =========================== short test summary info ============================ 682s FAILED q2_quality_filter/test/test_filter.py::FilterTests::test_q_score - Att... 682s FAILED q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_all_dropped 682s FAILED q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_numeric_ids 682s FAILED q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_real 682s FAILED q2_quality_filter/test/test_filter.py::FilterTests::test_q_score_real_joined 682s ============== 5 failed, 5 passed, 1 skipped, 1 warning in 11.39s ============== 683s autopkgtest [09:14:58]: test run-unit-test: -----------------------] 686s autopkgtest [09:15:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 686s run-unit-test FAIL non-zero exit status 1 687s autopkgtest [09:15:02]: @@@@@@@@@@@@@@@@@@@@ summary 687s run-unit-test FAIL non-zero exit status 1 708s nova [W] Skipping flock for amd64 708s Creating nova instance adt-oracular-i386-q2-quality-filter-20240708-090334-juju-7f2275-prod-proposed-migration-environment-3-fff4efae-8e72-4a62-9ee4-751309c65328 from image adt/ubuntu-oracular-amd64-server-20240707.img (UUID a564d08f-b120-4297-9fe1-fa5551c3a09b)...