82s autopkgtest [09:06:59]: starting date and time: 2024-07-08 09:06:59+0000
123s autopkgtest [09:07:40]: git checkout: fd3bed09 nova: allow more retries for quota issues
123s autopkgtest [09:07:40]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1jrs1yl5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade q2-quality-control --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-107.secgroup --name adt-oracular-i386-q2-quality-control-20240708-090348-juju-7f2275-prod-proposed-migration-environment-2-65dc2240-d605-4ed9-a723-9331be483255 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
417s autopkgtest [09:12:34]: testbed dpkg architecture: amd64
417s autopkgtest [09:12:34]: testbed apt version: 2.9.6
417s autopkgtest [09:12:34]: test architecture: i386
417s autopkgtest [09:12:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup
418s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
418s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
418s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB]
418s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
418s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB]
418s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB]
418s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB]
418s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B]
418s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B]
418s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB]
418s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B]
418s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [345 kB]
418s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [199 kB]
418s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B]
418s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B]
418s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B]
418s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B]
419s Fetched 1317 kB in 0s (4895 kB/s)
419s Reading package lists...
421s Reading package lists...
421s Building dependency tree...
421s Reading state information...
422s Calculating upgrade...
422s The following packages will be upgraded:
422s   fuse3 libfuse3-3
422s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
422s Need to get 109 kB of archives.
422s After this operation, 4096 B of additional disk space will be used.
422s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 fuse3 amd64 3.14.0-6 [25.5 kB]
422s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 libfuse3-3 amd64 3.14.0-6 [83.2 kB]
422s Fetched 109 kB in 0s (1722 kB/s)
423s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74464 files and directories currently installed.)
423s Preparing to unpack .../fuse3_3.14.0-6_amd64.deb ...
423s Adding 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3'
423s Adding 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3'
423s Unpacking fuse3 (3.14.0-6) over (3.14.0-5build1) ...
423s Preparing to unpack .../libfuse3-3_3.14.0-6_amd64.deb ...
423s Unpacking libfuse3-3:amd64 (3.14.0-6) over (3.14.0-5build1) ...
423s Setting up libfuse3-3:amd64 (3.14.0-6) ...
423s Setting up fuse3 (3.14.0-6) ...
423s Removing 'diversion of /bin/fusermount to /bin/fusermount.usr-is-merged by fuse3'
423s Removing 'diversion of /sbin/mount.fuse to /sbin/mount.fuse.usr-is-merged by fuse3'
423s update-initramfs: deferring update (trigger activated)
423s Processing triggers for libc-bin (2.39-0ubuntu9) ...
423s Processing triggers for man-db (2.12.1-2) ...
424s Processing triggers for initramfs-tools (0.142ubuntu29) ...
424s update-initramfs: Generating /boot/initrd.img-6.8.0-31-generic
424s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
433s Reading package lists...
433s Building dependency tree...
433s Reading state information...
434s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
435s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
435s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
435s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
435s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
437s Reading package lists...
437s Reading package lists...
437s Building dependency tree...
437s Reading state information...
437s Calculating upgrade...
438s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
438s Reading package lists...
438s Building dependency tree...
438s Reading state information...
438s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
438s autopkgtest [09:12:55]: rebooting testbed after setup commands that affected boot
442s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
455s autopkgtest [09:13:12]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
457s autopkgtest [09:13:14]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-quality-control
458s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-control 2024.2.0-2ubuntu1 (dsc) [2845 B]
458s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-control 2024.2.0-2ubuntu1 (tar) [1122 kB]
458s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-quality-control 2024.2.0-2ubuntu1 (diff) [7188 B]
458s gpgv: Signature made Mon Jun  3 20:32:14 2024 UTC
458s gpgv:                using RSA key 439884E6862A429C290DF63B033C4CA276024834
458s gpgv:                issuer "athos.ribeiro@canonical.com"
458s gpgv: Can't check signature: No public key
458s dpkg-source: warning: cannot verify inline signature for ./q2-quality-control_2024.2.0-2ubuntu1.dsc: no acceptable signature found
458s autopkgtest [09:13:15]: testing package q2-quality-control version 2024.2.0-2ubuntu1
458s autopkgtest [09:13:15]: build not needed
459s autopkgtest [09:13:16]: test run-unit-test: preparing testbed
464s Note, using file '/tmp/autopkgtest.5j4EO0/1-autopkgtest-satdep.dsc' to get the build dependencies
464s Reading package lists...
464s Building dependency tree...
464s Reading state information...
464s Starting pkgProblemResolver with broken count: 0
464s Starting 2 pkgProblemResolver with broken count: 0
464s Done
465s The following NEW packages will be installed:
465s   blt bowtie2 build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu
465s   cpp-x86-64-linux-gnu fontconfig fonts-glyphicons-halflings fonts-lyx g++
465s   g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base
465s   gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu javascript-common libaec0
465s   libasan8 libatomic1 libblas3 libcairo2 libcc1-0 libdatrie1 libgcc-13-dev
465s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64
465s   libhdf5-hl-100t64 libhts3t64 libhtscodecs2 libhwasan0 libice6 libimagequant0
465s   libisl23 libitm1 libjs-bootstrap libjs-jquery libjs-jquery-hotkeys
465s   libjs-jquery-isonscreen libjs-jquery-metadata libjs-jquery-tablesorter
465s   libjs-jquery-throttle-debounce libjs-jquery-ui libjs-popper.js liblapack3
465s   liblbfgsb0 liblcms2-2 liblsan0 liblzf1 libmbedcrypto7t64 libmbedtls14t64
465s   libmbedx509-1t64 libmpc3 libnorm1t64 libopenblas0 libopenblas0-pthread
465s   libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
465s   libpaper-utils libpaper1 libpgm-5.3-0t64 libpixman-1-0 libqhull-r8.0
465s   libquadmath0 libraqm0 libsm6 libsodium23 libssw0 libstdc++-13-dev libsz2
465s   libtcl8.6 libthai-data libthai0 libtk8.6 libtsan2 libubsan1 libwebpdemux2
465s   libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1
465s   libxss1 libxt6t64 libyajl2 libzmq5 littler ncbi-blast+ ncbi-data
465s   node-d3-color node-d3-interpolate node-d3-scale-chromatic
465s   node-fortawesome-fontawesome-free node-natural-sort node-normalize.css
465s   node-thenby python-matplotlib-data python3-all python3-appdirs
465s   python3-bcrypt python3-bibtexparser python3-biom-format python3-brotli
465s   python3-click python3-colorama python3-contourpy python3-coverage
465s   python3-cycler python3-dateutil python3-decorator python3-dill
465s   python3-filelock python3-flask python3-flask-sqlalchemy python3-flufl.lock
465s   python3-fonttools python3-fs python3-globus-sdk python3-greenlet
465s   python3-h5py python3-h5py-serial python3-hdmedians python3-ijson
465s   python3-iniconfig python3-itsdangerous python3-kiwisolver python3-lxml
465s   python3-lz4 python3-matplotlib python3-mpmath python3-nacl python3-natsort
465s   python3-networkx python3-numpy python3-packaging python3-pandas
465s   python3-pandas-lib python3-paramiko python3-parsl python3-pil
465s   python3-pil.imagetk python3-pluggy python3-psutil python3-public python3-py
465s   python3-pytest python3-pytest-cov python3-scipy python3-seaborn
465s   python3-setproctitle python3-skbio python3-sqlalchemy python3-sympy
465s   python3-tblib python3-tk python3-tomlkit python3-typeguard python3-tzlocal
465s   python3-ufolib2 python3-unicodedata2 python3-werkzeug python3-zmq
465s   q2-quality-control q2-taxa q2-types q2templates qiime r-base-core
465s   r-bioc-biocgenerics r-bioc-decontam r-cran-cli r-cran-colorspace
465s   r-cran-fansi r-cran-farver r-cran-getopt r-cran-ggplot2 r-cran-glue
465s   r-cran-gtable r-cran-isoband r-cran-labeling r-cran-lattice r-cran-lifecycle
465s   r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv
465s   r-cran-munsell r-cran-nlme r-cran-optparse r-cran-pillar r-cran-pkgconfig
465s   r-cran-pkgkitten r-cran-plyr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
465s   r-cran-reshape2 r-cran-rlang r-cran-scales r-cran-stringi r-cran-stringr
465s   r-cran-tibble r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr
465s   samtools tk8.6-blt2.5 unicode-data unzip vsearch x11-common xdg-utils zip
465s 0 upgraded, 224 newly installed, 0 to remove and 0 not upgraded.
465s Need to get 247 MB of archives.
465s After this operation, 940 MB of additional disk space will be used.
465s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
465s Get:2 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB]
465s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB]
465s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
465s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
465s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB]
465s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
465s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB]
465s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7build1 [630 kB]
465s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 blt amd64 2.5.3+dfsg-7build1 [4840 B]
465s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB]
465s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
465s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
465s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB]
466s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B]
466s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
466s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
466s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB]
466s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
466s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB]
466s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB]
466s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB]
466s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB]
467s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB]
467s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB]
467s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB]
467s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB]
467s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB]
467s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB]
468s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB]
468s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
468s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
468s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB]
468s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB]
468s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB]
468s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
468s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
468s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
468s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB]
468s Get:40 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
468s Get:41 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-lyx all 2.4.1-1 [171 kB]
468s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B]
468s Get:43 http://ftpmaster.internal/ubuntu oracular/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
468s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
468s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB]
468s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
468s Get:47 http://ftpmaster.internal/ubuntu oracular/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
468s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 libcairo2 amd64 1.18.0-3build1 [566 kB]
468s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
468s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
468s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
468s Get:52 http://ftpmaster.internal/ubuntu oracular/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB]
468s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
468s Get:54 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB]
468s Get:55 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB]
468s Get:56 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhtscodecs2 amd64 1.6.0-1build1 [98.8 kB]
468s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 libhts3t64 amd64 1.20+ds-1 [439 kB]
468s Get:58 http://ftpmaster.internal/ubuntu oracular/main amd64 libice6 amd64 2:1.0.10-1build3 [41.4 kB]
468s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
468s Get:60 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
468s Get:61 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-metadata all 12-4 [6582 B]
468s Get:62 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [193 kB]
468s Get:63 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.5 kB]
468s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
468s Get:65 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
468s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0-pthread amd64 0.3.27+ds-2 [7185 kB]
469s Get:67 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
469s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
469s Get:69 http://ftpmaster.internal/ubuntu oracular/main amd64 liblcms2-2 amd64 2.14-2build1 [161 kB]
469s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
469s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedcrypto7t64 amd64 2.28.8-1 [209 kB]
469s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedx509-1t64 amd64 2.28.8-1 [46.6 kB]
469s Get:73 http://ftpmaster.internal/ubuntu oracular/universe amd64 libmbedtls14t64 amd64 2.28.8-1 [82.2 kB]
469s Get:74 http://ftpmaster.internal/ubuntu oracular/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB]
469s Get:75 http://ftpmaster.internal/ubuntu oracular/universe amd64 libopenblas0 amd64 0.3.27+ds-2 [6218 B]
469s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
469s Get:77 http://ftpmaster.internal/ubuntu oracular/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
469s Get:78 http://ftpmaster.internal/ubuntu oracular/main amd64 libpango-1.0-0 amd64 1.54.0+ds-1 [233 kB]
469s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-1 [42.3 kB]
469s Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-1 [28.7 kB]
469s Get:81 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper1 amd64 1.1.29build1 [13.4 kB]
469s Get:82 http://ftpmaster.internal/ubuntu oracular/main amd64 libpaper-utils amd64 1.1.29build1 [8650 B]
469s Get:83 http://ftpmaster.internal/ubuntu oracular/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB]
469s Get:84 http://ftpmaster.internal/ubuntu oracular/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
469s Get:85 http://ftpmaster.internal/ubuntu oracular/main amd64 libraqm0 amd64 0.10.1-1build1 [15.0 kB]
469s Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 libsm6 amd64 2:1.2.3-1build3 [15.7 kB]
469s Get:87 http://ftpmaster.internal/ubuntu oracular/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB]
469s Get:88 http://ftpmaster.internal/ubuntu oracular/universe amd64 libssw0 amd64 1.1-14build1 [22.1 kB]
469s Get:89 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [12.4 kB]
469s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 libwebpmux3 amd64 1.4.0-0.1 [25.8 kB]
469s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 libxslt1.1 amd64 1.1.39-0exp1build1 [167 kB]
469s Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
469s Get:93 http://ftpmaster.internal/ubuntu oracular/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB]
469s Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 zip amd64 3.0-13build1 [175 kB]
469s Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 unzip amd64 6.0-28ubuntu5 [180 kB]
469s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
469s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-base-core amd64 4.4.1-1 [28.5 MB]
469s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-littler amd64 0.3.20-1 [96.0 kB]
469s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 littler all 0.3.20-1 [2486 B]
469s Get:100 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-data all 6.1.20170106+dfsg2-2 [4281 kB]
470s Get:101 http://ftpmaster.internal/ubuntu oracular/universe amd64 ncbi-blast+ amd64 2.12.0+ds-4build2 [12.5 MB]
470s Get:102 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-d3-color all 1.4.1+~1.4.2-1 [19.9 kB]
470s Get:103 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-d3-interpolate all 1.4.0+~1.4.2-1 [24.0 kB]
470s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-d3-scale-chromatic all 1.5.0+~1.5.1-1 [23.5 kB]
470s Get:105 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB]
470s Get:106 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-natural-sort all 1.0.0-5 [4306 B]
470s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB]
470s Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 node-thenby all 1.3.4+git20200720.0fd165a+ds-5 [5098 B]
470s Get:109 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
470s Get:110 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B]
470s Get:111 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB]
470s Get:112 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB]
470s Get:113 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB]
470s Get:114 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py-serial amd64 3.10.0-1ubuntu3 [906 kB]
470s Get:115 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-h5py all 3.10.0-1ubuntu3 [7978 B]
470s Get:116 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB]
470s Get:117 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB]
470s Get:118 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
470s Get:119 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB]
470s Get:120 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB]
470s Get:121 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
470s Get:122 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB]
471s Get:123 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-biom-format amd64 2.1.16-1 [141 kB]
471s Get:124 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-brotli amd64 1.1.0-2build2 [332 kB]
471s Get:125 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-contourpy amd64 1.0.7-3 [181 kB]
471s Get:126 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-coverage amd64 7.4.4+dfsg1-0ubuntu2 [147 kB]
471s Get:127 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
471s Get:128 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-dill all 0.3.8-1 [83.0 kB]
471s Get:129 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-filelock all 3.15.4-1 [12.8 kB]
471s Get:130 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-itsdangerous all 2.2.0-1 [15.2 kB]
471s Get:131 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-werkzeug all 3.0.3-1 [170 kB]
471s Get:132 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-flask all 3.0.3-1ubuntu1 [83.2 kB]
471s Get:133 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB]
471s Get:134 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB]
471s Get:135 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB]
471s Get:136 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-psutil amd64 5.9.8-2build2 [195 kB]
471s Get:137 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-public all 4.1.0-1 [7052 B]
471s Get:138 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-flufl.lock all 8.1.0-1 [12.4 kB]
471s Get:139 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
471s Get:140 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
471s Get:141 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-sympy all 1.12-8 [3966 kB]
471s Get:142 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fs all 2.4.16-4 [91.3 kB]
471s Get:143 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-lxml amd64 5.2.1-1 [1243 kB]
471s Get:144 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build4 [26.2 kB]
471s Get:145 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build1 [362 kB]
471s Get:146 http://ftpmaster.internal/ubuntu oracular/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
471s Get:147 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-fonttools amd64 4.46.0-1build2 [1436 kB]
471s Get:148 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-globus-sdk all 3.41.0-1 [225 kB]
471s Get:149 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-hdmedians amd64 0.14.2-5.1build1 [124 kB]
471s Get:150 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
471s Get:151 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-kiwisolver amd64 1.4.5-1 [51.0 kB]
471s Get:152 http://ftpmaster.internal/ubuntu oracular/main amd64 libopenjp2-7 amd64 2.5.0-2build3 [173 kB]
471s Get:153 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-pil amd64 10.3.0-2 [457 kB]
471s Get:154 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-tk amd64 3.12.3-0ubuntu1 [102 kB]
471s Get:155 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pil.imagetk amd64 10.3.0-2 [9224 B]
471s Get:156 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB]
471s Get:157 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-matplotlib amd64 3.6.3-2ubuntu1 [6080 kB]
471s Get:158 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-nacl amd64 1.5.0-4build1 [57.9 kB]
471s Get:159 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB]
471s Get:160 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
471s Get:161 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-bcrypt amd64 4.1.2-1 [229 kB]
471s Get:162 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-paramiko all 3.4.0-1ubuntu1 [145 kB]
471s Get:163 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-setproctitle amd64 1.3.3-1build2 [19.0 kB]
471s Get:164 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tblib all 3.0.0-5 [12.9 kB]
471s Get:165 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-typeguard all 4.1.5-1 [32.7 kB]
471s Get:166 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-py all 1.11.0-2 [72.7 kB]
471s Get:167 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-zmq amd64 24.0.1-5build1 [286 kB]
471s Get:168 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-parsl all 2024.05.27+ds-1 [274 kB]
471s Get:169 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
471s Get:170 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB]
471s Get:171 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3244 B]
471s Get:172 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest-cov all 5.0.0-1 [21.3 kB]
471s Get:173 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-seaborn all 0.13.2-4 [225 kB]
471s Get:174 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-skbio amd64 0.6.1-2 [1333 kB]
471s Get:175 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tomlkit all 0.12.5-1 [37.7 kB]
471s Get:176 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-tzlocal all 5.2-1.1 [20.5 kB]
471s Get:177 http://ftpmaster.internal/ubuntu oracular/universe amd64 qiime all 2024.2.0-1ubuntu1 [311 kB]
471s Get:178 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2templates all 2024.5.0+ds-1 [12.0 kB]
471s Get:179 http://ftpmaster.internal/ubuntu oracular/main amd64 libyajl2 amd64 2.1.0-5build1 [20.2 kB]
471s Get:180 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-ijson amd64 3.3.0-1 [36.7 kB]
471s Get:181 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-types all 2024.2.0-1ubuntu1 [5752 kB]
471s Get:182 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-taxa all 2024.2.0+dfsg-1ubuntu1 [40.1 kB]
471s Get:183 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
471s Get:184 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB]
471s Get:185 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB]
471s Get:186 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rlang amd64 1.1.4-1 [1708 kB]
471s Get:187 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
471s Get:188 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-gtable all 0.3.5+dfsg-1 [192 kB]
471s Get:189 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB]
471s Get:190 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mass amd64 7.3-61-1 [1109 kB]
471s Get:191 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
471s Get:192 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-nlme amd64 3.1.165-1 [2309 kB]
471s Get:193 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-matrix amd64 1.7-0-3 [4185 kB]
472s Get:194 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB]
472s Get:195 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB]
472s Get:196 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB]
472s Get:197 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-colorspace amd64 2.1-0+dfsg-1 [1541 kB]
472s Get:198 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB]
472s Get:199 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB]
472s Get:200 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
472s Get:201 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB]
472s Get:202 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-scales all 1.3.0-1 [603 kB]
472s Get:203 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB]
472s Get:204 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB]
472s Get:205 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB]
472s Get:206 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB]
472s Get:207 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
472s Get:208 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
472s Get:209 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB]
472s Get:210 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-withr all 2.5.0-1 [225 kB]
472s Get:211 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
472s Get:212 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
472s Get:213 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB]
472s Get:214 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB]
472s Get:215 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB]
472s Get:216 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB]
472s Get:217 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB]
472s Get:218 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-bioc-decontam all 1.22.0+dfsg-2 [210 kB]
472s Get:219 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-getopt all 1.20.4-1 [38.4 kB]
472s Get:220 http://ftpmaster.internal/ubuntu oracular/universe amd64 r-cran-optparse all 1.7.4-1 [81.6 kB]
472s Get:221 http://ftpmaster.internal/ubuntu oracular/universe amd64 bowtie2 amd64 2.5.3-1 [1254 kB]
472s Get:222 http://ftpmaster.internal/ubuntu oracular/universe amd64 samtools amd64 1.20-3 [599 kB]
472s Get:223 http://ftpmaster.internal/ubuntu oracular/universe amd64 vsearch amd64 2.28.1-3 [411 kB]
472s Get:224 http://ftpmaster.internal/ubuntu oracular/universe amd64 q2-quality-control all 2024.2.0-2ubuntu1 [733 kB]
472s Preconfiguring packages ...
473s Fetched 247 MB in 7s (36.7 MB/s)
473s Selecting previously unselected package libjs-jquery.
473s (Reading database ... 
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(Reading database ... 74466 files and directories currently installed.)
473s Preparing to unpack .../000-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
473s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
473s Selecting previously unselected package libjs-jquery-hotkeys.
473s Preparing to unpack .../001-libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ...
473s Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ...
473s Selecting previously unselected package libtcl8.6:amd64.
473s Preparing to unpack .../002-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ...
473s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ...
473s Selecting previously unselected package libxrender1:amd64.
473s Preparing to unpack .../003-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
473s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
473s Selecting previously unselected package libxft2:amd64.
473s Preparing to unpack .../004-libxft2_2.3.6-1build1_amd64.deb ...
473s Unpacking libxft2:amd64 (2.3.6-1build1) ...
473s Selecting previously unselected package x11-common.
473s Preparing to unpack .../005-x11-common_1%3a7.7+23ubuntu3_all.deb ...
473s Unpacking x11-common (1:7.7+23ubuntu3) ...
473s Selecting previously unselected package libxss1:amd64.
473s Preparing to unpack .../006-libxss1_1%3a1.2.3-1build3_amd64.deb ...
473s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
473s Selecting previously unselected package libtk8.6:amd64.
473s Preparing to unpack .../007-libtk8.6_8.6.14-1build1_amd64.deb ...
473s Unpacking libtk8.6:amd64 (8.6.14-1build1) ...
473s Selecting previously unselected package tk8.6-blt2.5.
473s Preparing to unpack .../008-tk8.6-blt2.5_2.5.3+dfsg-7build1_amd64.deb ...
473s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
473s Selecting previously unselected package blt.
473s Preparing to unpack .../009-blt_2.5.3+dfsg-7build1_amd64.deb ...
473s Unpacking blt (2.5.3+dfsg-7build1) ...
473s Selecting previously unselected package gcc-13-base:amd64.
473s Preparing to unpack .../010-gcc-13-base_13.2.0-23ubuntu4_amd64.deb ...
473s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu4) ...
473s Selecting previously unselected package libisl23:amd64.
473s Preparing to unpack .../011-libisl23_0.26-3build1_amd64.deb ...
473s Unpacking libisl23:amd64 (0.26-3build1) ...
473s Selecting previously unselected package libmpc3:amd64.
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480s Selecting previously unselected package python3-h5py.
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480s Unpacking python3-h5py (3.10.0-1ubuntu3) ...
480s Selecting previously unselected package python3-colorama.
480s Preparing to unpack .../115-python3-colorama_0.4.6-4_all.deb ...
480s Unpacking python3-colorama (0.4.6-4) ...
480s Selecting previously unselected package python3-click.
480s Preparing to unpack .../116-python3-click_8.1.7-1_all.deb ...
480s Unpacking python3-click (8.1.7-1) ...
480s Selecting previously unselected package python3-dateutil.
480s Preparing to unpack .../117-python3-dateutil_2.9.0-2_all.deb ...
480s Unpacking python3-dateutil (2.9.0-2) ...
480s Selecting previously unselected package python3-pandas-lib:amd64.
480s Preparing to unpack .../118-python3-pandas-lib_2.2.2+dfsg-4_amd64.deb ...
480s Unpacking python3-pandas-lib:amd64 (2.2.2+dfsg-4) ...
480s Selecting previously unselected package python3-pandas.
480s Preparing to unpack .../119-python3-pandas_2.2.2+dfsg-4_all.deb ...
480s Unpacking python3-pandas (2.2.2+dfsg-4) ...
480s Selecting previously unselected package python3-decorator.
480s Preparing to unpack .../120-python3-decorator_5.1.1-5_all.deb ...
480s Unpacking python3-decorator (5.1.1-5) ...
480s Selecting previously unselected package python3-scipy.
480s Preparing to unpack .../121-python3-scipy_1.12.0-2_amd64.deb ...
480s Unpacking python3-scipy (1.12.0-2) ...
481s Selecting previously unselected package python3-biom-format.
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481s Unpacking python3-biom-format (2.1.16-1) ...
481s Selecting previously unselected package python3-brotli.
481s Preparing to unpack .../123-python3-brotli_1.1.0-2build2_amd64.deb ...
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481s Selecting previously unselected package python3-contourpy.
481s Preparing to unpack .../124-python3-contourpy_1.0.7-3_amd64.deb ...
481s Unpacking python3-contourpy (1.0.7-3) ...
481s Selecting previously unselected package python3-coverage.
481s Preparing to unpack .../125-python3-coverage_7.4.4+dfsg1-0ubuntu2_amd64.deb ...
481s Unpacking python3-coverage (7.4.4+dfsg1-0ubuntu2) ...
481s Selecting previously unselected package python3-cycler.
481s Preparing to unpack .../126-python3-cycler_0.12.1-1_all.deb ...
481s Unpacking python3-cycler (0.12.1-1) ...
481s Selecting previously unselected package python3-dill.
481s Preparing to unpack .../127-python3-dill_0.3.8-1_all.deb ...
481s Unpacking python3-dill (0.3.8-1) ...
481s Selecting previously unselected package python3-filelock.
481s Preparing to unpack .../128-python3-filelock_3.15.4-1_all.deb ...
481s Unpacking python3-filelock (3.15.4-1) ...
481s Selecting previously unselected package python3-itsdangerous.
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481s Selecting previously unselected package python3-werkzeug.
481s Preparing to unpack .../130-python3-werkzeug_3.0.3-1_all.deb ...
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481s Selecting previously unselected package python3-flask.
481s Preparing to unpack .../131-python3-flask_3.0.3-1ubuntu1_all.deb ...
481s Unpacking python3-flask (3.0.3-1ubuntu1) ...
481s Selecting previously unselected package python3-greenlet.
481s Preparing to unpack .../132-python3-greenlet_3.0.3-0ubuntu5_amd64.deb ...
481s Unpacking python3-greenlet (3.0.3-0ubuntu5) ...
481s Selecting previously unselected package python3-sqlalchemy.
481s Preparing to unpack .../133-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ...
481s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ...
481s Selecting previously unselected package python3-flask-sqlalchemy.
481s Preparing to unpack .../134-python3-flask-sqlalchemy_3.0.3-1_all.deb ...
481s Unpacking python3-flask-sqlalchemy (3.0.3-1) ...
481s Selecting previously unselected package python3-psutil.
481s Preparing to unpack .../135-python3-psutil_5.9.8-2build2_amd64.deb ...
481s Unpacking python3-psutil (5.9.8-2build2) ...
481s Selecting previously unselected package python3-public.
481s Preparing to unpack .../136-python3-public_4.1.0-1_all.deb ...
481s Unpacking python3-public (4.1.0-1) ...
481s Selecting previously unselected package python3-flufl.lock.
481s Preparing to unpack .../137-python3-flufl.lock_8.1.0-1_all.deb ...
481s Unpacking python3-flufl.lock (8.1.0-1) ...
481s Selecting previously unselected package python3-ufolib2.
481s Preparing to unpack .../138-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
481s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
481s Selecting previously unselected package python3-mpmath.
481s Preparing to unpack .../139-python3-mpmath_1.3.0-1_all.deb ...
481s Unpacking python3-mpmath (1.3.0-1) ...
481s Selecting previously unselected package python3-sympy.
481s Preparing to unpack .../140-python3-sympy_1.12-8_all.deb ...
481s Unpacking python3-sympy (1.12-8) ...
482s Selecting previously unselected package python3-fs.
482s Preparing to unpack .../141-python3-fs_2.4.16-4_all.deb ...
482s Unpacking python3-fs (2.4.16-4) ...
482s Selecting previously unselected package python3-lxml:amd64.
482s Preparing to unpack .../142-python3-lxml_5.2.1-1_amd64.deb ...
482s Unpacking python3-lxml:amd64 (5.2.1-1) ...
482s Selecting previously unselected package python3-lz4.
482s Preparing to unpack .../143-python3-lz4_4.0.2+dfsg-1build4_amd64.deb ...
482s Unpacking python3-lz4 (4.0.2+dfsg-1build4) ...
482s Selecting previously unselected package python3-unicodedata2.
482s Preparing to unpack .../144-python3-unicodedata2_15.1.0+ds-1build1_amd64.deb ...
482s Unpacking python3-unicodedata2 (15.1.0+ds-1build1) ...
482s Selecting previously unselected package unicode-data.
482s Preparing to unpack .../145-unicode-data_15.1.0-1_all.deb ...
482s Unpacking unicode-data (15.1.0-1) ...
482s Selecting previously unselected package python3-fonttools.
482s Preparing to unpack .../146-python3-fonttools_4.46.0-1build2_amd64.deb ...
482s Unpacking python3-fonttools (4.46.0-1build2) ...
482s Selecting previously unselected package python3-globus-sdk.
482s Preparing to unpack .../147-python3-globus-sdk_3.41.0-1_all.deb ...
482s Unpacking python3-globus-sdk (3.41.0-1) ...
482s Selecting previously unselected package python3-hdmedians.
482s Preparing to unpack .../148-python3-hdmedians_0.14.2-5.1build1_amd64.deb ...
482s Unpacking python3-hdmedians (0.14.2-5.1build1) ...
482s Selecting previously unselected package python3-iniconfig.
482s Preparing to unpack .../149-python3-iniconfig_1.1.1-2_all.deb ...
482s Unpacking python3-iniconfig (1.1.1-2) ...
482s Selecting previously unselected package python3-kiwisolver.
482s Preparing to unpack .../150-python3-kiwisolver_1.4.5-1_amd64.deb ...
482s Unpacking python3-kiwisolver (1.4.5-1) ...
483s Selecting previously unselected package libopenjp2-7:amd64.
483s Preparing to unpack .../151-libopenjp2-7_2.5.0-2build3_amd64.deb ...
483s Unpacking libopenjp2-7:amd64 (2.5.0-2build3) ...
483s Selecting previously unselected package python3-pil:amd64.
483s Preparing to unpack .../152-python3-pil_10.3.0-2_amd64.deb ...
483s Unpacking python3-pil:amd64 (10.3.0-2) ...
483s Selecting previously unselected package python3-tk:amd64.
483s Preparing to unpack .../153-python3-tk_3.12.3-0ubuntu1_amd64.deb ...
483s Unpacking python3-tk:amd64 (3.12.3-0ubuntu1) ...
483s Selecting previously unselected package python3-pil.imagetk:amd64.
483s Preparing to unpack .../154-python3-pil.imagetk_10.3.0-2_amd64.deb ...
483s Unpacking python3-pil.imagetk:amd64 (10.3.0-2) ...
483s Selecting previously unselected package python3-packaging.
483s Preparing to unpack .../155-python3-packaging_24.0-1_all.deb ...
483s Unpacking python3-packaging (24.0-1) ...
483s Selecting previously unselected package python3-matplotlib.
483s Preparing to unpack .../156-python3-matplotlib_3.6.3-2ubuntu1_amd64.deb ...
483s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ...
483s Selecting previously unselected package python3-nacl.
483s Preparing to unpack .../157-python3-nacl_1.5.0-4build1_amd64.deb ...
483s Unpacking python3-nacl (1.5.0-4build1) ...
483s Selecting previously unselected package python3-natsort.
483s Preparing to unpack .../158-python3-natsort_8.0.2-2_all.deb ...
483s Unpacking python3-natsort (8.0.2-2) ...
483s Selecting previously unselected package python3-networkx.
483s Preparing to unpack .../159-python3-networkx_3.2.1-4ubuntu1_all.deb ...
483s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
484s Selecting previously unselected package python3-bcrypt.
484s Preparing to unpack .../160-python3-bcrypt_4.1.2-1_amd64.deb ...
484s Unpacking python3-bcrypt (4.1.2-1) ...
484s Selecting previously unselected package python3-paramiko.
484s Preparing to unpack .../161-python3-paramiko_3.4.0-1ubuntu1_all.deb ...
484s Unpacking python3-paramiko (3.4.0-1ubuntu1) ...
484s Selecting previously unselected package python3-setproctitle:amd64.
484s Preparing to unpack .../162-python3-setproctitle_1.3.3-1build2_amd64.deb ...
484s Unpacking python3-setproctitle:amd64 (1.3.3-1build2) ...
484s Selecting previously unselected package python3-tblib.
484s Preparing to unpack .../163-python3-tblib_3.0.0-5_all.deb ...
484s Unpacking python3-tblib (3.0.0-5) ...
484s Selecting previously unselected package python3-typeguard.
484s Preparing to unpack .../164-python3-typeguard_4.1.5-1_all.deb ...
484s Unpacking python3-typeguard (4.1.5-1) ...
484s Selecting previously unselected package python3-py.
484s Preparing to unpack .../165-python3-py_1.11.0-2_all.deb ...
484s Unpacking python3-py (1.11.0-2) ...
484s Selecting previously unselected package python3-zmq.
484s Preparing to unpack .../166-python3-zmq_24.0.1-5build1_amd64.deb ...
484s Unpacking python3-zmq (24.0.1-5build1) ...
484s Selecting previously unselected package python3-parsl.
484s Preparing to unpack .../167-python3-parsl_2024.05.27+ds-1_all.deb ...
484s Unpacking python3-parsl (2024.05.27+ds-1) ...
484s Selecting previously unselected package python3-pluggy.
484s Preparing to unpack .../168-python3-pluggy_1.5.0-1_all.deb ...
484s Unpacking python3-pluggy (1.5.0-1) ...
484s Selecting previously unselected package python3-pytest.
484s Preparing to unpack .../169-python3-pytest_7.4.4-1_all.deb ...
484s Unpacking python3-pytest (7.4.4-1) ...
484s Selecting previously unselected package libjs-jquery-isonscreen.
484s Preparing to unpack .../170-libjs-jquery-isonscreen_1.2.0-1.1_all.deb ...
484s Unpacking libjs-jquery-isonscreen (1.2.0-1.1) ...
484s Selecting previously unselected package python3-pytest-cov.
484s Preparing to unpack .../171-python3-pytest-cov_5.0.0-1_all.deb ...
484s Unpacking python3-pytest-cov (5.0.0-1) ...
484s Selecting previously unselected package python3-seaborn.
484s Preparing to unpack .../172-python3-seaborn_0.13.2-4_all.deb ...
484s Unpacking python3-seaborn (0.13.2-4) ...
484s Selecting previously unselected package python3-skbio.
484s Preparing to unpack .../173-python3-skbio_0.6.1-2_amd64.deb ...
484s Unpacking python3-skbio (0.6.1-2) ...
484s Selecting previously unselected package python3-tomlkit.
484s Preparing to unpack .../174-python3-tomlkit_0.12.5-1_all.deb ...
484s Unpacking python3-tomlkit (0.12.5-1) ...
485s Selecting previously unselected package python3-tzlocal.
485s Preparing to unpack .../175-python3-tzlocal_5.2-1.1_all.deb ...
485s Unpacking python3-tzlocal (5.2-1.1) ...
485s Selecting previously unselected package qiime.
485s Preparing to unpack .../176-qiime_2024.2.0-1ubuntu1_all.deb ...
485s Unpacking qiime (2024.2.0-1ubuntu1) ...
485s Selecting previously unselected package q2templates.
485s Preparing to unpack .../177-q2templates_2024.5.0+ds-1_all.deb ...
485s Unpacking q2templates (2024.5.0+ds-1) ...
485s Selecting previously unselected package libyajl2:amd64.
485s Preparing to unpack .../178-libyajl2_2.1.0-5build1_amd64.deb ...
485s Unpacking libyajl2:amd64 (2.1.0-5build1) ...
485s Selecting previously unselected package python3-ijson.
485s Preparing to unpack .../179-python3-ijson_3.3.0-1_amd64.deb ...
485s Unpacking python3-ijson (3.3.0-1) ...
485s Selecting previously unselected package q2-types.
485s Preparing to unpack .../180-q2-types_2024.2.0-1ubuntu1_all.deb ...
485s Unpacking q2-types (2024.2.0-1ubuntu1) ...
485s Selecting previously unselected package q2-taxa.
485s Preparing to unpack .../181-q2-taxa_2024.2.0+dfsg-1ubuntu1_all.deb ...
485s Unpacking q2-taxa (2024.2.0+dfsg-1ubuntu1) ...
485s Selecting previously unselected package r-bioc-biocgenerics.
485s Preparing to unpack .../182-r-bioc-biocgenerics_0.48.1-2_all.deb ...
485s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
485s Selecting previously unselected package r-cran-cli.
485s Preparing to unpack .../183-r-cran-cli_3.6.2-1_amd64.deb ...
485s Unpacking r-cran-cli (3.6.2-1) ...
485s Selecting previously unselected package r-cran-glue.
485s Preparing to unpack .../184-r-cran-glue_1.7.0-1_amd64.deb ...
485s Unpacking r-cran-glue (1.7.0-1) ...
485s Selecting previously unselected package r-cran-rlang.
485s Preparing to unpack .../185-r-cran-rlang_1.1.4-1_amd64.deb ...
485s Unpacking r-cran-rlang (1.1.4-1) ...
485s Selecting previously unselected package r-cran-lifecycle.
485s Preparing to unpack .../186-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
485s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
485s Selecting previously unselected package r-cran-gtable.
485s Preparing to unpack .../187-r-cran-gtable_0.3.5+dfsg-1_all.deb ...
485s Unpacking r-cran-gtable (0.3.5+dfsg-1) ...
485s Selecting previously unselected package r-cran-isoband.
485s Preparing to unpack .../188-r-cran-isoband_0.2.7-1_amd64.deb ...
485s Unpacking r-cran-isoband (0.2.7-1) ...
486s Selecting previously unselected package r-cran-mass.
486s Preparing to unpack .../189-r-cran-mass_7.3-61-1_amd64.deb ...
486s Unpacking r-cran-mass (7.3-61-1) ...
486s Selecting previously unselected package r-cran-lattice.
486s Preparing to unpack .../190-r-cran-lattice_0.22-6-1_amd64.deb ...
486s Unpacking r-cran-lattice (0.22-6-1) ...
486s Selecting previously unselected package r-cran-nlme.
486s Preparing to unpack .../191-r-cran-nlme_3.1.165-1_amd64.deb ...
486s Unpacking r-cran-nlme (3.1.165-1) ...
486s Selecting previously unselected package r-cran-matrix.
486s Preparing to unpack .../192-r-cran-matrix_1.7-0-3_amd64.deb ...
486s Unpacking r-cran-matrix (1.7-0-3) ...
486s Selecting previously unselected package r-cran-mgcv.
486s Preparing to unpack .../193-r-cran-mgcv_1.9-1-1_amd64.deb ...
486s Unpacking r-cran-mgcv (1.9-1-1) ...
486s Selecting previously unselected package r-cran-farver.
486s Preparing to unpack .../194-r-cran-farver_2.1.2-1_amd64.deb ...
486s Unpacking r-cran-farver (2.1.2-1) ...
486s Selecting previously unselected package r-cran-labeling.
486s Preparing to unpack .../195-r-cran-labeling_0.4.3-1_all.deb ...
486s Unpacking r-cran-labeling (0.4.3-1) ...
486s Selecting previously unselected package r-cran-colorspace.
486s Preparing to unpack .../196-r-cran-colorspace_2.1-0+dfsg-1_amd64.deb ...
486s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
486s Selecting previously unselected package r-cran-munsell.
486s Preparing to unpack .../197-r-cran-munsell_0.5.1-1_all.deb ...
486s Unpacking r-cran-munsell (0.5.1-1) ...
486s Selecting previously unselected package r-cran-r6.
486s Preparing to unpack .../198-r-cran-r6_2.5.1-1_all.deb ...
486s Unpacking r-cran-r6 (2.5.1-1) ...
486s Selecting previously unselected package r-cran-rcolorbrewer.
486s Preparing to unpack .../199-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
486s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
486s Selecting previously unselected package r-cran-viridislite.
486s Preparing to unpack .../200-r-cran-viridislite_0.4.2-2_all.deb ...
486s Unpacking r-cran-viridislite (0.4.2-2) ...
486s Selecting previously unselected package r-cran-scales.
486s Preparing to unpack .../201-r-cran-scales_1.3.0-1_all.deb ...
486s Unpacking r-cran-scales (1.3.0-1) ...
486s Selecting previously unselected package r-cran-fansi.
486s Preparing to unpack .../202-r-cran-fansi_1.0.5-1_amd64.deb ...
486s Unpacking r-cran-fansi (1.0.5-1) ...
486s Selecting previously unselected package r-cran-magrittr.
486s Preparing to unpack .../203-r-cran-magrittr_2.0.3-1_amd64.deb ...
486s Unpacking r-cran-magrittr (2.0.3-1) ...
486s Selecting previously unselected package r-cran-utf8.
486s Preparing to unpack .../204-r-cran-utf8_1.2.4-1_amd64.deb ...
486s Unpacking r-cran-utf8 (1.2.4-1) ...
486s Selecting previously unselected package r-cran-vctrs.
486s Preparing to unpack .../205-r-cran-vctrs_0.6.5-1_amd64.deb ...
486s Unpacking r-cran-vctrs (0.6.5-1) ...
486s Selecting previously unselected package r-cran-pillar.
486s Preparing to unpack .../206-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
486s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
486s Selecting previously unselected package r-cran-pkgconfig.
487s Preparing to unpack .../207-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
487s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
487s Selecting previously unselected package r-cran-tibble.
487s Preparing to unpack .../208-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ...
487s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
487s Selecting previously unselected package r-cran-withr.
487s Preparing to unpack .../209-r-cran-withr_2.5.0-1_all.deb ...
487s Unpacking r-cran-withr (2.5.0-1) ...
487s Selecting previously unselected package r-cran-ggplot2.
487s Preparing to unpack .../210-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
487s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
487s Selecting previously unselected package r-cran-pkgkitten.
487s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ...
487s Unpacking r-cran-pkgkitten (0.2.3-1) ...
487s Selecting previously unselected package r-cran-rcpp.
487s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_amd64.deb ...
487s Unpacking r-cran-rcpp (1.0.12-1) ...
487s Selecting previously unselected package r-cran-plyr.
487s Preparing to unpack .../213-r-cran-plyr_1.8.9-1_amd64.deb ...
487s Unpacking r-cran-plyr (1.8.9-1) ...
487s Selecting previously unselected package r-cran-stringi.
487s Preparing to unpack .../214-r-cran-stringi_1.8.3-1_amd64.deb ...
487s Unpacking r-cran-stringi (1.8.3-1) ...
487s Selecting previously unselected package r-cran-stringr.
487s Preparing to unpack .../215-r-cran-stringr_1.5.1-1_all.deb ...
487s Unpacking r-cran-stringr (1.5.1-1) ...
487s Selecting previously unselected package r-cran-reshape2.
487s Preparing to unpack .../216-r-cran-reshape2_1.4.4-2build1_amd64.deb ...
487s Unpacking r-cran-reshape2 (1.4.4-2build1) ...
487s Selecting previously unselected package r-bioc-decontam.
487s Preparing to unpack .../217-r-bioc-decontam_1.22.0+dfsg-2_all.deb ...
487s Unpacking r-bioc-decontam (1.22.0+dfsg-2) ...
487s Selecting previously unselected package r-cran-getopt.
487s Preparing to unpack .../218-r-cran-getopt_1.20.4-1_all.deb ...
487s Unpacking r-cran-getopt (1.20.4-1) ...
487s Selecting previously unselected package r-cran-optparse.
487s Preparing to unpack .../219-r-cran-optparse_1.7.4-1_all.deb ...
487s Unpacking r-cran-optparse (1.7.4-1) ...
487s Selecting previously unselected package bowtie2.
487s Preparing to unpack .../220-bowtie2_2.5.3-1_amd64.deb ...
487s Unpacking bowtie2 (2.5.3-1) ...
487s Selecting previously unselected package samtools.
487s Preparing to unpack .../221-samtools_1.20-3_amd64.deb ...
487s Unpacking samtools (1.20-3) ...
487s Selecting previously unselected package vsearch.
487s Preparing to unpack .../222-vsearch_2.28.1-3_amd64.deb ...
487s Unpacking vsearch (2.28.1-3) ...
487s Selecting previously unselected package q2-quality-control.
487s Preparing to unpack .../223-q2-quality-control_2024.2.0-2ubuntu1_all.deb ...
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496s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g'
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503s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
503s update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode
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518s Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-1) ...
518s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu4) ...
518s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
518s Setting up q2templates (2024.5.0+ds-1) ...
518s Setting up python3-parsl (2024.05.27+ds-1) ...
519s Setting up gcc (4:13.2.0-7ubuntu1) ...
519s Setting up qiime (2024.2.0-1ubuntu1) ...
519s Setting up python3-biom-format (2.1.16-1) ...
520s Setting up python3-skbio (0.6.1-2) ...
520s Setting up q2-types (2024.2.0-1ubuntu1) ...
520s Setting up r-base-core (4.4.1-1) ...
521s 
521s Creating config file /etc/R/Renviron with new version
521s Setting up r-cran-labeling (0.4.3-1) ...
521s Setting up r-cran-lattice (0.22-6-1) ...
521s Setting up r-cran-nlme (3.1.165-1) ...
521s Setting up r-cran-farver (2.1.2-1) ...
521s Setting up r-cran-viridislite (0.4.2-2) ...
521s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
521s Setting up r-cran-r6 (2.5.1-1) ...
521s Setting up r-cran-pkgkitten (0.2.3-1) ...
521s Setting up r-cran-magrittr (2.0.3-1) ...
521s Setting up r-cran-littler (0.3.20-1) ...
521s Setting up q2-taxa (2024.2.0+dfsg-1ubuntu1) ...
521s Setting up r-cran-rcpp (1.0.12-1) ...
521s Setting up g++-13 (13.2.0-23ubuntu4) ...
521s Setting up r-bioc-biocgenerics (0.48.1-2) ...
521s Setting up r-cran-rlang (1.1.4-1) ...
521s Setting up littler (0.3.20-1) ...
521s Setting up r-cran-withr (2.5.0-1) ...
521s Setting up r-cran-fansi (1.0.5-1) ...
521s Setting up r-cran-mass (7.3-61-1) ...
521s Setting up r-cran-glue (1.7.0-1) ...
521s Setting up r-cran-cli (3.6.2-1) ...
521s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
521s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
521s Setting up r-cran-getopt (1.20.4-1) ...
521s Setting up r-cran-utf8 (1.2.4-1) ...
521s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
521s Setting up r-cran-stringi (1.8.3-1) ...
521s Setting up r-cran-plyr (1.8.9-1) ...
521s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
521s Setting up r-cran-isoband (0.2.7-1) ...
521s Setting up r-cran-gtable (0.3.5+dfsg-1) ...
521s Setting up r-cran-matrix (1.7-0-3) ...
521s Setting up r-cran-mgcv (1.9-1-1) ...
521s Setting up g++ (4:13.2.0-7ubuntu1) ...
521s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
521s Setting up build-essential (12.10ubuntu1) ...
521s Setting up r-cran-optparse (1.7.4-1) ...
521s Setting up r-cran-vctrs (0.6.5-1) ...
521s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
521s Setting up r-cran-stringr (1.5.1-1) ...
521s Setting up r-cran-munsell (0.5.1-1) ...
521s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
521s Setting up r-cran-reshape2 (1.4.4-2build1) ...
521s Setting up r-cran-scales (1.3.0-1) ...
521s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
521s Setting up r-bioc-decontam (1.22.0+dfsg-2) ...
521s Setting up python3-fonttools (4.46.0-1build2) ...
522s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
522s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
523s Setting up python3-seaborn (0.13.2-4) ...
524s Setting up q2-quality-control (2024.2.0-2ubuntu1) ...
524s Processing triggers for man-db (2.12.1-2) ...
526s Processing triggers for install-info (7.1-3build2) ...
526s Processing triggers for libc-bin (2.39-0ubuntu9) ...
527s Reading package lists...
527s Building dependency tree...
527s Reading state information...
527s Starting pkgProblemResolver with broken count: 0
527s Starting 2 pkgProblemResolver with broken count: 0
527s Done
528s The following NEW packages will be installed:
528s   autopkgtest-satdep
528s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
528s Need to get 0 B/700 B of archives.
528s After this operation, 0 B of additional disk space will be used.
528s Get:1 /tmp/autopkgtest.5j4EO0/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B]
528s Selecting previously unselected package autopkgtest-satdep.
528s (Reading database ... 
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528s Preparing to unpack .../2-autopkgtest-satdep.deb ...
528s Unpacking autopkgtest-satdep (0) ...
528s Setting up autopkgtest-satdep (0) ...
531s (Reading database ... 100867 files and directories currently installed.)
531s Removing autopkgtest-satdep (0) ...
531s autopkgtest [09:14:28]: test run-unit-test: [-----------------------
531s ============================= test session starts ==============================
531s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12
531s cachedir: .pytest_cache
531s rootdir: /tmp/autopkgtest.5j4EO0/autopkgtest_tmp
531s plugins: cov-5.0.0, typeguard-4.1.5
542s collecting ... collected 94 items
542s 
547s q2_quality_control/tests/test_decontam.py::TestIdentify::test_combined PASSED [  1%]
551s q2_quality_control/tests/test_decontam.py::TestIdentify::test_frequency PASSED [  2%]
554s q2_quality_control/tests/test_decontam.py::TestIdentify::test_prevalence PASSED [  3%]
558s q2_quality_control/tests/test_decontam.py::TestRemove::test_remove PASSED [  4%]
563s q2_quality_control/tests/test_decontam.py::TestIdentify_mixed_names::test_combined PASSED [  5%]
567s q2_quality_control/tests/test_decontam.py::TestIdentify_mixed_names::test_frequency PASSED [  6%]
570s q2_quality_control/tests/test_decontam.py::TestIdentify_mixed_names::test_prevalence PASSED [  7%]
575s q2_quality_control/tests/test_decontam.py::TestIdentify_more_names::test_combined PASSED [  8%]
579s q2_quality_control/tests/test_decontam.py::TestIdentify_more_names::test_frequency PASSED [  9%]
583s q2_quality_control/tests/test_decontam.py::TestIdentify_more_names::test_prevalence PASSED [ 10%]
584s q2_quality_control/tests/test_filter.py::TestBowtie2Build::test_build FAILED [ 11%]
584s q2_quality_control/tests/test_filter.py::TestFilterSingle::test_filter_single_exclude_seqs FAILED [ 12%]
584s q2_quality_control/tests/test_filter.py::TestFilterSingle::test_filter_single_keep_seqs FAILED [ 13%]
585s q2_quality_control/tests/test_filter.py::TestFilterPaired::test_filter_paired_exclude_seqs FAILED [ 14%]
585s q2_quality_control/tests/test_filter.py::TestFilterPaired::test_filter_paired_keep_seqs FAILED [ 15%]
585s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_96_perc_identity FAILED [ 17%]
585s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_97_perc_identity FAILED [ 18%]
586s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_99_perc_identity FAILED [ 19%]
586s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_all_hit FAILED [ 20%]
586s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_all_miss FAILED [ 21%]
587s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_bacterial_hit_fungal_miss FAILED [ 22%]
587s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_fungal_hit_bacterial_miss FAILED [ 23%]
587s q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_left_justify_value_error FAILED [ 24%]
588s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_96_perc_identity FAILED [ 25%]
588s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_97_perc_identity FAILED [ 26%]
588s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_99_perc_identity FAILED [ 27%]
588s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_all_hit FAILED [ 28%]
589s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_all_miss FAILED [ 29%]
589s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_bacterial_hit_fungal_miss FAILED [ 30%]
589s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_fungal_hit_bacterial_miss FAILED [ 31%]
590s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_left_justify_hits FAILED [ 32%]
590s q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_left_justify_missed FAILED [ 34%]
590s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_blast_low_evalue_discards_weak_matches FAILED [ 35%]
591s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_high_evalue_low_perc_query_aligned_permissive FAILED [ 36%]
591s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_hit_with_blastn_short FAILED [ 37%]
591s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_hit_with_default_vsearch FAILED [ 38%]
592s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_miss_with_blastn_short_low_eval FAILED [ 39%]
592s q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_miss_with_default_blast FAILED [ 40%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_collapse_table PASSED [ 41%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_compute_taxon_accuracy PASSED [ 42%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_compute_taxon_accuracy_all_match PASSED [ 43%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_compute_taxon_accuracy_no_matches PASSED [ 44%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_drop_nans_zeros PASSED [ 45%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_identify_incorrect_classifications PASSED [ 46%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_interpret_metric_selection_invalid PASSED [ 47%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_interpret_metric_selection_valid PASSED [ 48%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_match_samples_by_index PASSED [ 50%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_tally_misclassifications PASSED [ 51%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_tally_misclassifications_all_match PASSED [ 52%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_tally_misclassifications_no_match PASSED [ 53%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_validate_metadata_and_exp_table_md_superset_vals_subset PASSED [ 54%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_validate_metadata_and_exp_table_metadata_not_superset PASSED [ 55%]
592s q2_quality_control/tests/test_quality_control.py::UtilitiesTests::test_validate_metadata_and_exp_table_metadata_values_not_subset PASSED [ 56%]
592s q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_identical FAILED [ 57%]
593s q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_mismatches FAILED [ 58%]
593s q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_part_rand FAILED [ 59%]
593s q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_plugin FAILED [ 60%]
593s q2_quality_control/tests/test_quality_control.py::NCLUtilitiesTests::test_find_nearest_common_lineage_match PASSED [ 61%]
593s q2_quality_control/tests/test_quality_control.py::NCLUtilitiesTests::test_find_nearest_common_lineage_misclassification PASSED [ 62%]
593s q2_quality_control/tests/test_quality_control.py::NCLUtilitiesTests::test_find_nearest_common_lineage_no_match PASSED [ 63%]
593s q2_quality_control/tests/test_quality_control.py::NCLUtilitiesTests::test_find_nearest_common_lineage_overclassification PASSED [ 64%]
593s q2_quality_control/tests/test_quality_control.py::NCLUtilitiesTests::test_find_nearest_common_lineage_underclassification PASSED [ 65%]
593s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_compute_per_level_accuracy PASSED [ 67%]
593s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_compute_per_level_accuracy_vector_length_one PASSED [ 68%]
596s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition PASSED [ 69%]
596s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition_depth_too_high PASSED [ 70%]
598s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition_dont_test_all_levels PASSED [ 71%]
600s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition_metadata_map_to_mock_sample PASSED [ 72%]
600s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition_metadata_not_superset PASSED [ 73%]
600s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_evaluate_composition_metadata_values_not_subset PASSED [ 74%]
604s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionTests::test_plugin_evaluate_composition PASSED [ 75%]
607s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionMockrobiotaDataTests::test_evaluate_composition_mockrobiota PASSED [ 76%]
609s q2_quality_control/tests/test_quality_control.py::EvaluateCompositionMockrobiotaDataTests::test_evaluate_composition_mockrobiota_metadata_map PASSED [ 77%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy PASSED [ 78%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_basic PASSED [ 79%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_plus_table_missing_features_in_table_FAIL PASSED [ 80%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_plus_table_no_sample_id PASSED [ 81%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_sample_id_no_table PASSED [ 82%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_sample_id_not_found_FAIL PASSED [ 84%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_evaluate_taxonomy_sample_id_plus_table PASSED [ 85%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_index_is_subset_FALSE PASSED [ 86%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_index_is_subset_TRUE PASSED [ 87%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_index_is_subset_equal_series PASSED [ 88%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_equal PASSED [ 89%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_inner PASSED [ 90%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_left PASSED [ 91%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_require_exp_id_FAIL PASSED [ 92%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_require_obs_id_FAIL PASSED [ 93%]
610s q2_quality_control/tests/test_quality_control.py::EvaluateTaxonomyTests::test_validate_indices_and_set_joining_mode_right PASSED [ 94%]
610s q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_decontam_table_format_to_df PASSED [ 95%]
610s q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_decontam_table_format_to_metadata PASSED [ 96%]
610s q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_decontam_table_format_validate_positive PASSED [ 97%]
610s q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_df_to_decontam_table_format FAILED [ 98%]
610s q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_metadata_to_decontam_table_format FAILED [100%]
610s 
610s =================================== FAILURES ===================================
610s _________________________ TestBowtie2Build.test_build __________________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65771cd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65771cd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_filter.TestBowtie2Build testMethod=test_build>
610s 
610s     def test_build(self):
610s         genome = Artifact.load(self.get_data_path('sars2-genome.qza'))
610s >       self.plugin.methods['bowtie2_build'](genome)
610s 
610s q2_quality_control/tests/test_filter.py:28: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/decorator.py:232: in fun
610s     return caller(func, *(extras + args), **kw)
610s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable
610s     provenance = self._ProvCaptureCls(
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65771cd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ TestFilterSingle.test_filter_single_exclude_seqs _______________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e0f50>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e0f50>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_filter.TestFilterSingle testMethod=test_filter_single_exclude_seqs>
610s 
610s     def test_filter_single_exclude_seqs(self):
610s >       obs_art, = self.plugin.methods['filter_reads'](
610s             self.demuxed_art, self.indexed_genome, exclude_seqs=True)
610s 
610s q2_quality_control/tests/test_filter.py:47: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/decorator.py:232: in fun
610s     return caller(func, *(extras + args), **kw)
610s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable
610s     provenance = self._ProvCaptureCls(
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e0f50>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ TestFilterSingle.test_filter_single_keep_seqs _________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65e8b450>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65e8b450>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_filter.TestFilterSingle testMethod=test_filter_single_keep_seqs>
610s 
610s     def test_filter_single_keep_seqs(self):
610s >       obs_art, = self.plugin.methods['filter_reads'](
610s             self.demuxed_art, self.indexed_genome, exclude_seqs=False)
610s 
610s q2_quality_control/tests/test_filter.py:63: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/decorator.py:232: in fun
610s     return caller(func, *(extras + args), **kw)
610s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable
610s     provenance = self._ProvCaptureCls(
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65e8b450>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ TestFilterPaired.test_filter_paired_exclude_seqs _______________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709250>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709250>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_filter.TestFilterPaired testMethod=test_filter_paired_exclude_seqs>
610s 
610s     def test_filter_paired_exclude_seqs(self):
610s >       obs_art, = self.plugin.methods['filter_reads'](
610s             self.demuxed_art, self.indexed_genome, exclude_seqs=True)
610s 
610s q2_quality_control/tests/test_filter.py:89: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/decorator.py:232: in fun
610s     return caller(func, *(extras + args), **kw)
610s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable
610s     provenance = self._ProvCaptureCls(
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709250>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ TestFilterPaired.test_filter_paired_keep_seqs _________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65757250>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65757250>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_filter.TestFilterPaired testMethod=test_filter_paired_keep_seqs>
610s 
610s     def test_filter_paired_keep_seqs(self):
610s >       obs_art, = self.plugin.methods['filter_reads'](
610s             self.demuxed_art, self.indexed_genome, exclude_seqs=False)
610s 
610s q2_quality_control/tests/test_filter.py:105: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/decorator.py:232: in fun
610s     return caller(func, *(extras + args), **kw)
610s /usr/lib/python3/dist-packages/qiime2/sdk/action.py:321: in bound_callable
610s     provenance = self._ProvCaptureCls(
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:546: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65757250>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ BlastTests.test_exclude_seqs_96_perc_identity _________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657a44d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657a44d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_96_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657a44d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ BlastTests.test_exclude_seqs_97_perc_identity _________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657741d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657741d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_97_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657741d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ BlastTests.test_exclude_seqs_99_perc_identity _________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a70750>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a70750>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_99_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a70750>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _____________________ BlastTests.test_exclude_seqs_all_hit _____________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a587d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a587d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_all_hit>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a587d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________________ BlastTests.test_exclude_seqs_all_miss _____________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25dd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25dd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_all_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25dd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________ BlastTests.test_exclude_seqs_bacterial_hit_fungal_miss ____________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548d350>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548d350>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_bacterial_hit_fungal_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548d350>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________ BlastTests.test_exclude_seqs_fungal_hit_bacterial_miss ____________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a598d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a598d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_fungal_hit_bacterial_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a598d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________ BlastTests.test_exclude_seqs_left_justify_value_error _____________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566f350>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566f350>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.BlastTests testMethod=test_exclude_seqs_left_justify_value_error>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566f350>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ VsearchTests.test_exclude_seqs_96_perc_identity ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548e050>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548e050>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_96_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548e050>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ VsearchTests.test_exclude_seqs_97_perc_identity ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e3e50>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e3e50>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_97_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e3e50>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ VsearchTests.test_exclude_seqs_99_perc_identity ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566fdd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566fdd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_99_perc_identity>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566fdd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________________ VsearchTests.test_exclude_seqs_all_hit ____________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548f850>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548f850>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_all_hit>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6548f850>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ___________________ VsearchTests.test_exclude_seqs_all_miss ____________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657089d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657089d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_all_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d657089d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ___________ VsearchTests.test_exclude_seqs_bacterial_hit_fungal_miss ___________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e2a50>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e2a50>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_bacterial_hit_fungal_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e2a50>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ___________ VsearchTests.test_exclude_seqs_fungal_hit_bacterial_miss ___________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566e250>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566e250>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_fungal_hit_bacterial_miss>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d6566e250>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ VsearchTests.test_exclude_seqs_left_justify_hits _______________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65798050>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65798050>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_left_justify_hits>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65798050>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ______________ VsearchTests.test_exclude_seqs_left_justify_missed ______________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25fd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25fd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.VsearchTests testMethod=test_exclude_seqs_left_justify_missed>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d25fd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_blast_low_evalue_discards_weak_matches _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a264d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a264d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_blast_low_evalue_discards_weak_matches>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a264d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_high_evalue_low_perc_query_aligned_permissive _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65754cd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65754cd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_high_evalue_low_perc_query_aligned_permissive>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65754cd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_short_seqs_hit_with_blastn_short _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e04d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e04d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_short_seqs_hit_with_blastn_short>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e04d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_short_seqs_hit_with_default_vsearch _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a24cd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a24cd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_short_seqs_hit_with_default_vsearch>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a24cd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_short_seqs_miss_with_blastn_short_low_eval _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d26250>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d26250>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_short_seqs_miss_with_blastn_short_low_eval>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65d26250>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _ SequenceQualityControlTests.test_exclude_seqs_short_seqs_miss_with_default_blast _
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65708dd0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65708dd0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.SequenceQualityControlTests testMethod=test_exclude_seqs_short_seqs_miss_with_default_blast>
610s 
610s     def setUp(self):
610s >       super().setUp()
610s 
610s q2_quality_control/tests/test_quality_control.py:181: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:68: in setUp
610s     self.bacterial_exp = _dnafastaformats_to_series(
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65708dd0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ EvaluateSeqsTests.test_evaluate_seqs_identical ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65eacc50>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65eacc50>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.EvaluateSeqsTests testMethod=test_evaluate_seqs_identical>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65eacc50>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _______________ EvaluateSeqsTests.test_evaluate_seqs_mismatches ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709050>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709050>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.EvaluateSeqsTests testMethod=test_evaluate_seqs_mismatches>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65709050>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ________________ EvaluateSeqsTests.test_evaluate_seqs_part_rand ________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a734d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a734d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.EvaluateSeqsTests testMethod=test_evaluate_seqs_part_rand>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d65a734d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _________________ EvaluateSeqsTests.test_evaluate_seqs_plugin __________________
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e25d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'ProvenancePath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e25d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'ProvenancePath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_quality_control.EvaluateSeqsTests testMethod=test_evaluate_seqs_plugin>
610s 
610s     def setUp(self):
610s         super().setUp()
610s     
610s         def _load_DNAFASTAFormat(reads_fn):
610s             reads_fp = self.get_data_path(reads_fn)
610s             return DNAFASTAFormat(reads_fp, mode='r')
610s     
610s         self.query_seqs = _load_DNAFASTAFormat('query-sequences.fasta')
610s         self.bacterial_ref = _load_DNAFASTAFormat(
610s             'bacterial-ref-sequences.fasta')
610s >       self.bacterial_exp = _dnafastaformats_to_series(
610s             _load_DNAFASTAFormat('bacterial-query-sequences.fasta'))
610s 
610s q2_quality_control/tests/test_quality_control.py:68: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s q2_quality_control/tests/test_quality_control.py:34: in _dnafastaformats_to_series
610s     fasta = qiime2.Artifact.import_data("FeatureData[Sequence]", fasta)
610s /usr/lib/python3/dist-packages/qiime2/sdk/result.py:331: in import_data
610s     provenance_capture = archive.ImportProvenanceCapture(format_, md5sums)
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:525: in __init__
610s     super().__init__()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:296: in __init__
610s     self._build_paths()
610s /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:303: in _build_paths
610s     self.path = qiime2.core.path.ProvenancePath()
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:146: in __new__
610s     return cls.__new(path)
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:129: in __new
610s     self._destructor = weakref.finalize(self, self._destruct, str(self))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'ProvenancePath' object has no attribute '_raw_paths'") raised in repr()] ProvenancePath object at 0x763d653e25d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'ProvenancePath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s ____________ TestStatsBoilerplate.test_df_to_decontam_table_format _____________
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d64226250>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'OutPath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d64226250>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'OutPath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_stats.TestStatsBoilerplate testMethod=test_df_to_decontam_table_format>
610s 
610s     def test_df_to_decontam_table_format(self):
610s         _, obs_df = self.transform_format(
610s             DecontamScoreFormat, pd.DataFrame,
610s             os.path.join('expected', 'score-table-format.tsv'))
610s         index = pd.Index(['Seq1', 'Seq2', 'Seq3', 'Seq4', 'Seq5'],
610s                          name='#OTU ID', dtype=object)
610s         cols = ['freq', 'prev', 'p.freq', 'p.prev', 'p']
610s         exp_df = pd.DataFrame(
610s             [[0.323531342, 549, 0.1, 1, 1],
610s              [0.098873007, 538, 0.2, 1, 1],
610s              [0.003674889, 160, 0.3, 0.328517354, 0.328517354],
610s              [0.067621014, 519, 0.4, 1, 1],
610s              [0.045234472, 354, 0.5, 1, 1]],
610s             index=index, columns=cols, dtype=float)
610s >       exp_table = transform(
610s             exp_df, from_type=pd.DataFrame, to_type=DecontamScoreFormat)
610s 
610s q2_quality_control/tests/test_stats.py:110: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/qiime2/plugin/util.py:21: in transform
610s     return transformation(data)
610s /usr/lib/python3/dist-packages/qiime2/core/transform.py:70: in transformation
610s     new_view = transformer(view)
610s q2_quality_control/_transformer.py:33: in _3
610s     return _dataframe_to_tsv_DecontamScore_format(df)
610s q2_quality_control/_transformer.py:8: in _dataframe_to_tsv_DecontamScore_format
610s     ff = DecontamScoreFormat()
610s /usr/lib/python3/dist-packages/qiime2/core/format.py:23: in __init__
610s     self.path = qpath.OutPath(
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:109: in __new__
610s     obj._destructor = weakref.finalize(obj, cls._destruct, str(obj))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d64226250>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'OutPath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s _________ TestStatsBoilerplate.test_metadata_to_decontam_table_format __________
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d650152d0>
610s 
610s     def __str__(self):
610s         """Return the string representation of the path, suitable for
610s         passing to system calls."""
610s         try:
610s >           return self._str
610s E           AttributeError: 'OutPath' object has no attribute '_str'
610s 
610s /usr/lib/python3.12/pathlib.py:441: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d650152d0>
610s 
610s     @property
610s     def drive(self):
610s         """The drive prefix (letter or UNC path), if any."""
610s         try:
610s >           return self._drv
610s E           AttributeError: 'OutPath' object has no attribute '_drv'
610s 
610s /usr/lib/python3.12/pathlib.py:555: AttributeError
610s 
610s During handling of the above exception, another exception occurred:
610s 
610s self = <q2_quality_control.tests.test_stats.TestStatsBoilerplate testMethod=test_metadata_to_decontam_table_format>
610s 
610s     def test_metadata_to_decontam_table_format(self):
610s         _, obs_df = self.transform_format(
610s             DecontamScoreFormat, qiime2.Metadata,
610s             os.path.join('expected', 'score-table-format.tsv'))
610s         index = pd.Index(['Seq1', 'Seq2', 'Seq3', 'Seq4', 'Seq5'],
610s                          name='#OTU ID', dtype=object)
610s         cols = ['freq', 'prev', 'p.freq', 'p.prev', 'p']
610s         exp_df = pd.DataFrame(
610s             [[0.323531342, 549, 0.1, 1, 1],
610s              [0.098873007, 538, 0.2, 1, 1],
610s              [0.003674889, 160, 0.3, 0.328517354, 0.328517354],
610s              [0.067621014, 519, 0.4, 1, 1],
610s              [0.045234472, 354, 0.5, 1, 1]],
610s             index=index, columns=cols, dtype=float)
610s         exp = qiime2.Metadata(exp_df)
610s >       decontam_table = transform(
610s             exp, from_type=qiime2.Metadata, to_type=DecontamScoreFormat)
610s 
610s q2_quality_control/tests/test_stats.py:65: 
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s /usr/lib/python3/dist-packages/qiime2/plugin/util.py:21: in transform
610s     return transformation(data)
610s /usr/lib/python3/dist-packages/qiime2/core/transform.py:70: in transformation
610s     new_view = transformer(view)
610s q2_quality_control/_transformer.py:26: in _2
610s     ff = DecontamScoreFormat()
610s /usr/lib/python3/dist-packages/qiime2/core/format.py:23: in __init__
610s     self.path = qpath.OutPath(
610s /usr/lib/python3/dist-packages/qiime2/core/path.py:109: in __new__
610s     obj._destructor = weakref.finalize(obj, cls._destruct, str(obj))
610s /usr/lib/python3.12/pathlib.py:443: in __str__
610s     self._str = self._format_parsed_parts(self.drive, self.root,
610s /usr/lib/python3.12/pathlib.py:557: in drive
610s     self._load_parts()
610s _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
610s 
610s self = <[AttributeError("'OutPath' object has no attribute '_raw_paths'") raised in repr()] OutPath object at 0x763d650152d0>
610s 
610s     def _load_parts(self):
610s >       paths = self._raw_paths
610s E       AttributeError: 'OutPath' object has no attribute '_raw_paths'
610s 
610s /usr/lib/python3.12/pathlib.py:408: AttributeError
610s =============================== warnings summary ===============================
610s ../../../usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13
610s   /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
610s     import pkg_resources
610s 
610s ../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871
610s   /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('mpl_toolkits')`.
610s   Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
610s     declare_namespace(pkg)
610s 
610s q2_quality_control/tests/test_decontam.py: 243 warnings
610s q2_quality_control/tests/test_quality_control.py: 13 warnings
610s   /usr/lib/python3/dist-packages/qiime2/metadata/metadata.py:1289: FutureWarning: the convert_dtype parameter is deprecated and will be removed in a future version.  Do ``ser.astype(object).apply()`` instead if you want ``convert_dtype=False``.
610s     norm_series = series.apply(normalize, convert_dtype=False)
610s 
610s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
610s 
610s ---------- coverage: platform linux, python 3.12.4-final-0 -----------
610s Name                                                 Stmts   Miss  Cover
610s ------------------------------------------------------------------------
610s q2_quality_control/__init__.py                           3      0   100%
610s q2_quality_control/_blast.py                            50     41    18%
610s q2_quality_control/_evaluate_seqs.py                    28     21    25%
610s q2_quality_control/_evaluate_taxonomy.py                73      1    99%
610s q2_quality_control/_filter.py                           67     50    25%
610s q2_quality_control/_pipelines.py                        18     17     6%
610s q2_quality_control/_stats.py                             7      0   100%
610s q2_quality_control/_threshold_graph/__init__.py          2      0   100%
610s q2_quality_control/_threshold_graph/_visualizer.py     114     98    14%
610s q2_quality_control/_transformer.py                      26      4    85%
610s q2_quality_control/_utilities.py                       242     21    91%
610s q2_quality_control/_version.py                           4      0   100%
610s q2_quality_control/decontam.py                          91     12    87%
610s q2_quality_control/plugin_setup.py                      41      0   100%
610s q2_quality_control/quality_control.py                   38     20    47%
610s q2_quality_control/tests/__init__.py                     0      0   100%
610s q2_quality_control/tests/test_decontam.py              212      1    99%
610s q2_quality_control/tests/test_filter.py                 72     41    43%
610s q2_quality_control/tests/test_quality_control.py       357     66    82%
610s q2_quality_control/tests/test_stats.py                  56     11    80%
610s ------------------------------------------------------------------------
610s TOTAL                                                 1501    404    73%
610s 
610s =========================== short test summary info ============================
610s FAILED q2_quality_control/tests/test_filter.py::TestBowtie2Build::test_build
610s FAILED q2_quality_control/tests/test_filter.py::TestFilterSingle::test_filter_single_exclude_seqs
610s FAILED q2_quality_control/tests/test_filter.py::TestFilterSingle::test_filter_single_keep_seqs
610s FAILED q2_quality_control/tests/test_filter.py::TestFilterPaired::test_filter_paired_exclude_seqs
610s FAILED q2_quality_control/tests/test_filter.py::TestFilterPaired::test_filter_paired_keep_seqs
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_96_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_97_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_99_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_all_hit
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_all_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_bacterial_hit_fungal_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_fungal_hit_bacterial_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::BlastTests::test_exclude_seqs_left_justify_value_error
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_96_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_97_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_99_perc_identity
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_all_hit
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_all_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_bacterial_hit_fungal_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_fungal_hit_bacterial_miss
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_left_justify_hits
610s FAILED q2_quality_control/tests/test_quality_control.py::VsearchTests::test_exclude_seqs_left_justify_missed
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_blast_low_evalue_discards_weak_matches
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_high_evalue_low_perc_query_aligned_permissive
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_hit_with_blastn_short
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_hit_with_default_vsearch
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_miss_with_blastn_short_low_eval
610s FAILED q2_quality_control/tests/test_quality_control.py::SequenceQualityControlTests::test_exclude_seqs_short_seqs_miss_with_default_blast
610s FAILED q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_identical
610s FAILED q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_mismatches
610s FAILED q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_part_rand
610s FAILED q2_quality_control/tests/test_quality_control.py::EvaluateSeqsTests::test_evaluate_seqs_plugin
610s FAILED q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_df_to_decontam_table_format
610s FAILED q2_quality_control/tests/test_stats.py::TestStatsBoilerplate::test_metadata_to_decontam_table_format
610s ============ 34 failed, 60 passed, 258 warnings in 79.04s (0:01:19) ============
611s autopkgtest [09:15:48]: test run-unit-test: -----------------------]
612s run-unit-test        FAIL non-zero exit status 1
612s autopkgtest [09:15:49]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
612s autopkgtest [09:15:49]: @@@@@@@@@@@@@@@@@@@@ summary
612s run-unit-test        FAIL non-zero exit status 1
622s nova [W] Skipping flock for amd64
622s Creating nova instance adt-oracular-i386-q2-quality-control-20240708-090348-juju-7f2275-prod-proposed-migration-environment-2-65dc2240-d605-4ed9-a723-9331be483255 from image adt/ubuntu-oracular-amd64-server-20240707.img (UUID a564d08f-b120-4297-9fe1-fa5551c3a09b)...