0s autopkgtest [09:36:35]: starting date and time: 2024-07-08 09:36:35+0000
  0s autopkgtest [09:36:35]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [09:36:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.klraypv5/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pandas --apt-upgrade python-pyomop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pandas/2.2.2+dfsg-4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-92.secgroup --name adt-oracular-i386-python-pyomop-20240708-090328-juju-7f2275-prod-proposed-migration-environment-2-defadbc3-5337-49d4-8a09-8287fe403a13 --image adt/ubuntu-oracular-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 41s autopkgtest [09:37:16]: testbed dpkg architecture: amd64
 41s autopkgtest [09:37:16]: testbed apt version: 2.9.6
 41s autopkgtest [09:37:16]: test architecture: i386
 41s autopkgtest [09:37:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 41s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
 42s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.2 kB]
 42s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [353 kB]
 42s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
 42s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 42s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main i386 Packages [74.0 kB]
 42s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 Packages [101 kB]
 42s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/main amd64 c-n-f Metadata [2592 B]
 42s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 Packages [34.9 kB]
 42s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/restricted i386 Packages [6244 B]
 42s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/restricted amd64 c-n-f Metadata [368 B]
 42s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/universe i386 Packages [199 kB]
 42s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 Packages [345 kB]
 42s Get:14 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 c-n-f Metadata [9628 B]
 42s Get:15 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse i386 Packages [3052 B]
 42s Get:16 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 Packages [7644 B]
 42s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse amd64 c-n-f Metadata [276 B]
 43s Fetched 1317 kB in 0s (5089 kB/s)
 43s Reading package lists...
 44s Reading package lists...
 44s Building dependency tree...
 44s Reading state information...
 45s Calculating upgrade...
 45s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 45s Reading package lists...
 45s Building dependency tree...
 45s Reading state information...
 46s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 46s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 46s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 46s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 46s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 47s Reading package lists...
 47s Reading package lists...
 47s Building dependency tree...
 47s Reading state information...
 48s Calculating upgrade...
 48s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 48s Reading package lists...
 48s Building dependency tree...
 48s Reading state information...
 49s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 49s autopkgtest [09:37:24]: testbed running kernel: Linux 6.8.0-31-generic #31-Ubuntu SMP PREEMPT_DYNAMIC Sat Apr 20 00:40:06 UTC 2024
 50s autopkgtest [09:37:25]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyomop
 51s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pyomop 4.2.0-2 (dsc) [2492 B]
 51s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pyomop 4.2.0-2 (tar) [40.3 kB]
 51s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pyomop 4.2.0-2 (diff) [5336 B]
 51s gpgv: Signature made Fri Apr 26 12:33:11 2024 UTC
 51s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
 51s gpgv: Can't check signature: No public key
 51s dpkg-source: warning: cannot verify inline signature for ./python-pyomop_4.2.0-2.dsc: no acceptable signature found
 51s autopkgtest [09:37:26]: testing package python-pyomop version 4.2.0-2
 51s autopkgtest [09:37:26]: build not needed
 51s autopkgtest [09:37:26]: test upstream: preparing testbed
 54s Note, using file '/tmp/autopkgtest.x9D9ZG/1-autopkgtest-satdep.dsc' to get the build dependencies
 54s Reading package lists...
 54s Building dependency tree...
 54s Reading state information...
 54s Starting pkgProblemResolver with broken count: 0
 55s Starting 2 pkgProblemResolver with broken count: 0
 55s Done
 55s The following NEW packages will be installed:
 55s   autoconf automake autopoint autotools-dev build-essential cpp cpp-13
 55s   cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu debhelper debugedit
 55s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common docutils-doc
 55s   dwz fonts-mathjax fonts-open-sans g++ g++-13 g++-13-x86-64-linux-gnu
 55s   g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu
 55s   gcc-x86-64-linux-gnu gettext help2man intltool-debian javascript-common
 55s   libarchive-zip-perl libasan8 libatomic1 libblas3 libcc1-0 libdebhelper-perl
 55s   libfile-stripnondeterminism-perl libgcc-13-dev libgfortran5 libgomp1
 55s   libhwasan0 libisl23 libitm1 libjs-bootstrap4 libjs-jquery libjs-mathjax
 55s   libjs-popper.js libjs-sphinxdoc libjs-underscore libjson-perl liblapack3
 55s   liblbfgsb0 liblsan0 libmpc3 libquadmath0 libstdc++-13-dev libtool libtsan2
 55s   libubsan1 m4 po-debconf pybuild-plugin-pyproject pyomop python-pandas-doc
 55s   python-pyomop-doc python-requests-doc python-scipy-doc python-sklearn-doc
 55s   python3-aiosqlite python3-alabaster python3-all python3-build python3-click
 55s   python3-colorama python3-commonmark python3-dateutil python3-decorator
 55s   python3-defusedxml python3-doc python3-docutils python3-greenlet
 55s   python3-imagesize python3-iniconfig python3-installer python3-numpy
 55s   python3-packaging python3-pandas python3-pandas-lib python3-pluggy
 55s   python3-pyomop python3-pyproject-hooks python3-pytest python3-recommonmark
 55s   python3-roman python3-scipy python3-setuptools-scm python3-snowballstemmer
 55s   python3-sphinx python3-sqlalchemy python3-toml python3-wheel python3.12-doc
 55s   sgml-base sphinx-common sphinx-doc xml-core
 55s 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded.
 55s Need to get 229 MB of archives.
 55s After this operation, 994 MB of additional disk space will be used.
 55s Get:1 http://ftpmaster.internal/ubuntu oracular/main amd64 sgml-base all 1.31 [11.4 kB]
 55s Get:2 http://ftpmaster.internal/ubuntu oracular/main amd64 m4 amd64 1.4.19-4build1 [244 kB]
 55s Get:3 http://ftpmaster.internal/ubuntu oracular/main amd64 autoconf all 2.71-3 [339 kB]
 55s Get:4 http://ftpmaster.internal/ubuntu oracular/main amd64 autotools-dev all 20220109.1 [44.9 kB]
 55s Get:5 http://ftpmaster.internal/ubuntu oracular/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB]
 55s Get:6 http://ftpmaster.internal/ubuntu oracular/main amd64 autopoint all 0.21-14ubuntu2 [422 kB]
 55s Get:7 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-base amd64 13.2.0-23ubuntu4 [49.0 kB]
 55s Get:8 http://ftpmaster.internal/ubuntu oracular/main amd64 libisl23 amd64 0.26-3build1 [680 kB]
 55s Get:9 http://ftpmaster.internal/ubuntu oracular/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB]
 55s Get:10 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [11.2 MB]
 55s Get:11 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-13 amd64 13.2.0-23ubuntu4 [1032 B]
 55s Get:12 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
 55s Get:13 http://ftpmaster.internal/ubuntu oracular/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
 55s Get:14 http://ftpmaster.internal/ubuntu oracular/main amd64 libcc1-0 amd64 14.1.0-1ubuntu1 [48.0 kB]
 55s Get:15 http://ftpmaster.internal/ubuntu oracular/main amd64 libgomp1 amd64 14.1.0-1ubuntu1 [148 kB]
 55s Get:16 http://ftpmaster.internal/ubuntu oracular/main amd64 libitm1 amd64 14.1.0-1ubuntu1 [29.1 kB]
 55s Get:17 http://ftpmaster.internal/ubuntu oracular/main amd64 libatomic1 amd64 14.1.0-1ubuntu1 [10.4 kB]
 55s Get:18 http://ftpmaster.internal/ubuntu oracular/main amd64 libasan8 amd64 14.1.0-1ubuntu1 [3025 kB]
 55s Get:19 http://ftpmaster.internal/ubuntu oracular/main amd64 liblsan0 amd64 14.1.0-1ubuntu1 [1313 kB]
 55s Get:20 http://ftpmaster.internal/ubuntu oracular/main amd64 libtsan2 amd64 14.1.0-1ubuntu1 [2736 kB]
 55s Get:21 http://ftpmaster.internal/ubuntu oracular/main amd64 libubsan1 amd64 14.1.0-1ubuntu1 [1174 kB]
 55s Get:22 http://ftpmaster.internal/ubuntu oracular/main amd64 libhwasan0 amd64 14.1.0-1ubuntu1 [1632 kB]
 55s Get:23 http://ftpmaster.internal/ubuntu oracular/main amd64 libquadmath0 amd64 14.1.0-1ubuntu1 [153 kB]
 55s Get:24 http://ftpmaster.internal/ubuntu oracular/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu4 [2688 kB]
 55s Get:25 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [21.9 MB]
 56s Get:26 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-13 amd64 13.2.0-23ubuntu4 [482 kB]
 56s Get:27 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
 56s Get:28 http://ftpmaster.internal/ubuntu oracular/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
 56s Get:29 http://ftpmaster.internal/ubuntu oracular/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu4 [2399 kB]
 56s Get:30 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu4 [12.5 MB]
 56s Get:31 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-13 amd64 13.2.0-23ubuntu4 [14.5 kB]
 56s Get:32 http://ftpmaster.internal/ubuntu oracular/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
 56s Get:33 http://ftpmaster.internal/ubuntu oracular/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
 56s Get:34 http://ftpmaster.internal/ubuntu oracular/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
 56s Get:35 http://ftpmaster.internal/ubuntu oracular/main amd64 libdebhelper-perl all 13.16ubuntu2 [92.9 kB]
 56s Get:36 http://ftpmaster.internal/ubuntu oracular/main amd64 libtool all 2.4.7-7build1 [166 kB]
 56s Get:37 http://ftpmaster.internal/ubuntu oracular/main amd64 dh-autoreconf all 20 [16.1 kB]
 56s Get:38 http://ftpmaster.internal/ubuntu oracular/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
 56s Get:39 http://ftpmaster.internal/ubuntu oracular/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [20.1 kB]
 56s Get:40 http://ftpmaster.internal/ubuntu oracular/main amd64 dh-strip-nondeterminism all 1.14.0-1 [5058 B]
 56s Get:41 http://ftpmaster.internal/ubuntu oracular/main amd64 debugedit amd64 1:5.0-5build2 [46.1 kB]
 56s Get:42 http://ftpmaster.internal/ubuntu oracular/main amd64 dwz amd64 0.15-1build6 [115 kB]
 56s Get:43 http://ftpmaster.internal/ubuntu oracular/main amd64 gettext amd64 0.21-14ubuntu2 [864 kB]
 56s Get:44 http://ftpmaster.internal/ubuntu oracular/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
 56s Get:45 http://ftpmaster.internal/ubuntu oracular/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
 56s Get:46 http://ftpmaster.internal/ubuntu oracular/main amd64 debhelper all 13.16ubuntu2 [869 kB]
 56s Get:47 http://ftpmaster.internal/ubuntu oracular/universe amd64 dh-python all 6.20240603 [112 kB]
 56s Get:48 http://ftpmaster.internal/ubuntu oracular/main amd64 xml-core all 0.19 [20.3 kB]
 56s Get:49 http://ftpmaster.internal/ubuntu oracular/main amd64 docutils-common all 0.20.1+dfsg-3 [132 kB]
 56s Get:50 http://ftpmaster.internal/ubuntu oracular/main amd64 docutils-doc all 0.20.1+dfsg-3 [1130 kB]
 56s Get:51 http://ftpmaster.internal/ubuntu oracular/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
 56s Get:52 http://ftpmaster.internal/ubuntu oracular/universe amd64 fonts-open-sans all 1.11-2 [635 kB]
 56s Get:53 http://ftpmaster.internal/ubuntu oracular/universe amd64 help2man amd64 1.49.3 [201 kB]
 56s Get:54 http://ftpmaster.internal/ubuntu oracular/main amd64 javascript-common all 11+nmu1 [5936 B]
 56s Get:55 http://ftpmaster.internal/ubuntu oracular/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB]
 56s Get:56 http://ftpmaster.internal/ubuntu oracular/main amd64 libgfortran5 amd64 14.1.0-1ubuntu1 [928 kB]
 56s Get:57 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
 56s Get:58 http://ftpmaster.internal/ubuntu oracular/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
 56s Get:59 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
 56s Get:60 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
 56s Get:61 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-sphinxdoc all 7.3.7-3 [154 kB]
 56s Get:62 http://ftpmaster.internal/ubuntu oracular/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
 56s Get:63 http://ftpmaster.internal/ubuntu oracular/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB]
 56s Get:64 http://ftpmaster.internal/ubuntu oracular/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
 56s Get:65 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-packaging all 24.0-1 [41.1 kB]
 56s Get:66 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pyproject-hooks all 1.1.0-1 [9852 B]
 56s Get:67 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
 56s Get:68 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-wheel all 0.43.0-1 [53.5 kB]
 56s Get:69 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-build all 1.2.1-1 [29.7 kB]
 56s Get:70 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
 56s Get:71 http://ftpmaster.internal/ubuntu oracular/universe amd64 pybuild-plugin-pyproject all 6.20240603 [1732 B]
 56s Get:72 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-aiosqlite all 0.17.0-2 [14.4 kB]
 56s Get:73 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-colorama all 0.4.6-4 [32.1 kB]
 56s Get:74 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-click all 8.1.7-1 [79.1 kB]
 56s Get:75 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-dateutil all 2.9.0-2 [80.3 kB]
 56s Get:76 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-numpy amd64 1:1.26.4+ds-10 [4437 kB]
 56s Get:77 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas-lib amd64 2.2.2+dfsg-4 [4444 kB]
 56s Get:78 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python3-pandas all 2.2.2+dfsg-4 [3111 kB]
 56s Get:79 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-greenlet amd64 3.0.3-0ubuntu5 [154 kB]
 56s Get:80 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB]
 56s Get:81 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pyomop all 4.2.0-2 [13.2 kB]
 56s Get:82 http://ftpmaster.internal/ubuntu oracular/universe amd64 pyomop all 4.2.0-2 [2812 B]
 56s Get:83 http://ftpmaster.internal/ubuntu oracular/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
 56s Get:84 http://ftpmaster.internal/ubuntu oracular-proposed/universe amd64 python-pandas-doc all 2.2.2+dfsg-4 [10.4 MB]
 56s Get:85 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-pyomop-doc all 4.2.0-2 [69.8 kB]
 56s Get:86 http://ftpmaster.internal/ubuntu oracular/main amd64 python-requests-doc all 2.32.3+dfsg-1ubuntu1 [174 kB]
 56s Get:87 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-sklearn-doc all 1.4.2+dfsg-3 [52.7 MB]
 57s Get:88 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-all amd64 3.12.3-0ubuntu1 [888 B]
 57s Get:89 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-commonmark all 0.9.1-6 [46.0 kB]
 57s Get:90 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
 57s Get:91 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-defusedxml all 0.7.1-2 [42.0 kB]
 57s Get:92 http://ftpmaster.internal/ubuntu oracular/main amd64 python3.12-doc all 3.12.4-1ubuntu1 [12.1 MB]
 57s Get:93 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-doc all 3.12.3-0ubuntu1 [10.1 kB]
 57s Get:94 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-roman all 3.3-3 [9632 B]
 57s Get:95 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-docutils all 0.20.1+dfsg-3 [393 kB]
 57s Get:96 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-imagesize all 1.4.1-1 [6844 B]
 57s Get:97 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
 57s Get:98 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
 57s Get:99 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-pytest all 7.4.4-1 [305 kB]
 57s Get:100 http://ftpmaster.internal/ubuntu oracular/main amd64 sphinx-common all 7.3.7-3 [773 kB]
 57s Get:101 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
 57s Get:102 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
 57s Get:103 http://ftpmaster.internal/ubuntu oracular/main amd64 python3-sphinx all 7.3.7-3 [574 kB]
 57s Get:104 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-recommonmark all 0.7.1+ds-5 [16.9 kB]
 57s Get:105 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-setuptools-scm all 8.1.0-1 [32.2 kB]
 57s Get:106 http://ftpmaster.internal/ubuntu oracular/main amd64 sphinx-doc all 7.3.7-3 [2313 kB]
 57s Get:107 http://ftpmaster.internal/ubuntu oracular/universe amd64 python-scipy-doc all 1.12.0-2 [36.9 MB]
 58s Get:108 http://ftpmaster.internal/ubuntu oracular/universe amd64 python3-scipy amd64 1.12.0-2 [16.5 MB]
 58s Fetched 229 MB in 3s (89.1 MB/s)
 58s Selecting previously unselected package sgml-base.
 58s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74466 files and directories currently installed.)
 58s Preparing to unpack .../000-sgml-base_1.31_all.deb ...
 58s Unpacking sgml-base (1.31) ...
 58s Selecting previously unselected package m4.
 58s Preparing to unpack .../001-m4_1.4.19-4build1_amd64.deb ...
 58s Unpacking m4 (1.4.19-4build1) ...
 58s Selecting previously unselected package autoconf.
 58s Preparing to unpack .../002-autoconf_2.71-3_all.deb ...
 58s Unpacking autoconf (2.71-3) ...
 58s Selecting previously unselected package autotools-dev.
 58s Preparing to unpack .../003-autotools-dev_20220109.1_all.deb ...
 58s Unpacking autotools-dev (20220109.1) ...
 58s Selecting previously unselected package automake.
 58s Preparing to unpack .../004-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
 59s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
 59s Selecting previously unselected package autopoint.
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 86s /usr/lib/python3/dist-packages/pyomop/main.py:36: SyntaxWarning: "is not" with 'str' literal. Did you mean "!="?
 86s   if vocab is not '':
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 90s /usr/lib/python3/dist-packages/recommonmark/transform.py:254: SyntaxWarning: invalid escape sequence '\w'
 90s   match = re.search('[ ]?[\w_-]+::.*', language)
 90s Reading package lists...
 91s Building dependency tree...
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 91s Starting 2 pkgProblemResolver with broken count: 0
 91s Done
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 92s   autopkgtest-satdep
 92s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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 92s After this operation, 0 B of additional disk space will be used.
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 92s Setting up autopkgtest-satdep (0) ...
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 94s Removing autopkgtest-satdep (0) ...
 94s autopkgtest [09:38:09]: test upstream: [-----------------------
 94s ============================= test session starts ==============================
 94s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12
 94s cachedir: .pytest_cache
 94s rootdir: /tmp/autopkgtest.x9D9ZG/autopkgtest_tmp
 94s configfile: setup.cfg
 94s collecting ... collected 6 items
 94s 
 95s tests/test_a_pyomop.py::test_create_cohort PASSED                        [ 16%]
 96s tests/test_ab_vector.py::test_create_patient PASSED                      [ 33%]
 96s tests/test_b_create_vocab.py::test_create_tables PASSED                  [ 50%]
 98s tests/test_b_create_vocab.py::test_create_vocab PASSED                   [ 66%]
 98s tests/test_c_vocab.py::test_vocab PASSED                                 [ 83%]
 99s tests/test_d_vector.py::test_create_vector PASSED                        [100%]
 99s 
 99s =============================== warnings summary ===============================
 99s tests/test_a_pyomop.py::test_create_cohort
 99s tests/test_a_pyomop.py::test_create_cohort
 99s tests/test_ab_vector.py::test_create_patient
 99s tests/test_ab_vector.py::test_create_patient
 99s tests/test_ab_vector.py::test_create_patient
 99s tests/test_ab_vector.py::test_create_patient
 99s tests/test_d_vector.py::test_create_vector
 99s tests/test_d_vector.py::test_create_vector
 99s   /usr/lib/python3/dist-packages/aiosqlite/core.py:102: DeprecationWarning: The default datetime adapter is deprecated as of Python 3.12; see the sqlite3 documentation for suggested replacement recipes
 99s     result = function()
 99s 
 99s tests/test_b_create_vocab.py::test_create_vocab
 99s   /usr/lib/python3/dist-packages/pyomop/vocabulary.py:133: SAWarning: The garbage collector is trying to clean up connection <AdaptedConnection <Connection(Thread-7, started daemon 134036682966720)>>. This feature is unsupported on unsupported on asyncio dbapis that lack a "terminate" feature, since no IO can be performed at this stage to reset the connection. Please close out all connections when they are no longer used, calling ``close()`` or using a context manager to manage their lifetime.
 99s     await conn.run_sync(lambda sync_conn: automap.prepare(autoload_with=sync_conn))
 99s 
 99s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
 99s ======================== 6 passed, 9 warnings in 4.34s =========================
 99s autopkgtest [09:38:14]: test upstream: -----------------------]
100s autopkgtest [09:38:15]: test upstream:  - - - - - - - - - - results - - - - - - - - - -
100s upstream             PASS
100s autopkgtest [09:38:15]: @@@@@@@@@@@@@@@@@@@@ summary
100s upstream             PASS
110s nova [W] Skipping flock for amd64
110s Creating nova instance adt-oracular-i386-python-pyomop-20240708-090328-juju-7f2275-prod-proposed-migration-environment-2-defadbc3-5337-49d4-8a09-8287fe403a13 from image adt/ubuntu-oracular-amd64-server-20240708.img (UUID a0fb9aef-f002-4c41-8539-53542ad6f0d4)...