0s autopkgtest [08:35:41]: starting date and time: 2024-05-24 08:35:41+0000
  0s autopkgtest [08:35:41]: git checkout: d60bd36 autopkgtest-build-lxd: Add missing remote prefix in get_boot_id().
  0s autopkgtest [08:35:41]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v7yaj_70/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:r-cran-ggplot2 --apt-upgrade r-cran-sf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-ggplot2/3.5.1+dfsg-1 -- lxd -r lxd-armhf-10.145.243.236 lxd-armhf-10.145.243.236:autopkgtest/ubuntu/oracular/armhf
 26s autopkgtest [08:36:07]: testbed dpkg architecture: armhf
 28s autopkgtest [08:36:09]: testbed apt version: 2.7.14build2
 28s autopkgtest [08:36:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 36s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
 36s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [497 kB]
 37s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [53.5 kB]
 37s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B]
 37s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
 37s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [112 kB]
 37s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [432 kB]
 37s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1968 B]
 37s Fetched 1176 kB in 1s (1521 kB/s)
 37s Reading package lists...
 56s tee: /proc/self/fd/2: Permission denied
 77s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 77s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 77s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 77s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 78s Reading package lists...
 78s Reading package lists...
 78s Building dependency tree...
 78s Reading state information...
 79s Calculating upgrade...
 79s The following package was automatically installed and is no longer required:
 79s   libatm1t64
 79s Use 'apt autoremove' to remove it.
 79s The following packages will be upgraded:
 79s   apt apt-utils bash-completion curl dhcpcd-base dpkg dpkg-dev dracut-install
 79s   fwupd gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 groff-base
 79s   initramfs-tools initramfs-tools-bin initramfs-tools-core iproute2
 79s   klibc-utils libapt-pkg6.0t64 libbsd0 libc-bin libc6 libcurl3t64-gnutls
 79s   libcurl4t64 libdpkg-perl libevent-core-2.1-7t64 libfwupd2 libgcc-s1
 79s   libgcrypt20 libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libklibc
 79s   liblocale-gettext-perl liblz4-1 libperl5.38t64 libsqlite3-0 libstdc++6
 79s   libuv1t64 libxcb1 locales man-db perl perl-base perl-modules-5.38
 79s   python-apt-common python3-apt python3-jinja2 python3-pyparsing python3-six
 79s   python3-typing-extensions rsync tzdata vim-common vim-tiny xxd
 80s 56 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 80s Need to get 37.3 MB of archives.
 80s After this operation, 545 kB of additional disk space will be used.
 80s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14.1.0-1ubuntu1 [48.4 kB]
 80s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14.1.0-1ubuntu1 [41.5 kB]
 80s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14.1.0-1ubuntu1 [714 kB]
 80s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libc6 armhf 2.39-0ubuntu8.1 [2828 kB]
 80s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libgcrypt20 armhf 1.10.3-3 [454 kB]
 80s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf liblz4-1 armhf 1.9.4-2 [58.0 kB]
 80s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libapt-pkg6.0t64 armhf 2.9.3 [1013 kB]
 80s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg armhf 1.22.6ubuntu10 [1230 kB]
 80s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libperl5.38t64 armhf 5.38.2-4 [4102 kB]
 80s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf perl armhf 5.38.2-4 [231 kB]
 80s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf perl-base armhf 5.38.2-4 [1671 kB]
 80s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf perl-modules-5.38 all 5.38.2-4 [3110 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libc-bin armhf 2.39-0ubuntu8.1 [530 kB]
 80s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf apt armhf 2.9.3 [1397 kB]
 81s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf apt-utils armhf 2.9.3 [217 kB]
 81s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf liblocale-gettext-perl armhf 1.07-7 [14.8 kB]
 81s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf rsync armhf 3.3.0-1 [414 kB]
 81s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf dhcpcd-base armhf 1:10.0.6-5 [186 kB]
 81s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf gir1.2-girepository-2.0 armhf 1.80.1-3 [24.7 kB]
 81s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf gir1.2-glib-2.0 armhf 2.80.2-1ubuntu1 [182 kB]
 81s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf libglib2.0-0t64 armhf 2.80.2-1ubuntu1 [1421 kB]
 81s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libgirepository-1.0-1 armhf 1.80.1-3 [107 kB]
 81s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf iproute2 armhf 6.9.0-1 [1083 kB]
 81s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libbsd0 armhf 0.12.2-1 [36.5 kB]
 81s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libglib2.0-data all 2.80.2-1ubuntu1 [49.3 kB]
 81s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libsqlite3-0 armhf 3.45.3-1 [601 kB]
 81s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf locales all 2.39-0ubuntu8.1 [4234 kB]
 81s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf python-apt-common all 2.9.0 [20.1 kB]
 81s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf python3-apt armhf 2.9.0 [162 kB]
 81s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf tzdata all 2024a-4ubuntu1 [274 kB]
 81s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf vim-tiny armhf 2:9.1.0377-1ubuntu1 [670 kB]
 81s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf vim-common all 2:9.1.0377-1ubuntu1 [385 kB]
 81s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf xxd armhf 2:9.1.0377-1ubuntu1 [63.0 kB]
 81s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf bash-completion all 1:2.14.0-1 [206 kB]
 81s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf groff-base armhf 1.23.0-4 [946 kB]
 81s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf libuv1t64 armhf 1.48.0-4 [83.2 kB]
 81s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb1 armhf 1.17.0-2 [46.3 kB]
 81s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf man-db armhf 2.12.1-1 [1201 kB]
 81s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf curl armhf 8.5.0-2ubuntu10.1 [219 kB]
 81s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libcurl4t64 armhf 8.5.0-2ubuntu10.1 [296 kB]
 81s Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg-dev all 1.22.6ubuntu10 [1074 kB]
 81s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libdpkg-perl all 1.22.6ubuntu10 [269 kB]
 81s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf dracut-install armhf 060+5-8ubuntu1 [34.3 kB]
 81s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu10.1 [290 kB]
 81s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libfwupd2 armhf 1.9.20-1 [126 kB]
 81s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf fwupd armhf 1.9.20-1 [4368 kB]
 81s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools all 0.142ubuntu27 [7898 B]
 81s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools-core all 0.142ubuntu27 [49.5 kB]
 81s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools-bin armhf 0.142ubuntu27 [20.9 kB]
 81s Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf klibc-utils armhf 2.0.13-4ubuntu1 [93.8 kB]
 81s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf libklibc armhf 2.0.13-4ubuntu1 [45.0 kB]
 81s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-core-2.1-7t64 armhf 2.1.12-stable-10 [82.5 kB]
 81s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf python3-jinja2 all 3.1.3-1 [107 kB]
 81s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf python3-pyparsing all 3.1.2-1 [86.4 kB]
 81s Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf python3-six all 1.16.0-6 [13.0 kB]
 81s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf python3-typing-extensions all 4.11.0-1 [61.5 kB]
 81s Preconfiguring packages ...
 82s Fetched 37.3 MB in 2s (21.6 MB/s)
 82s (Reading database ... 
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 82s Preparing to unpack .../gcc-14-base_14.1.0-1ubuntu1_armhf.deb ...
 82s Unpacking gcc-14-base:armhf (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
 82s Setting up gcc-14-base:armhf (14.1.0-1ubuntu1) ...
 82s (Reading database ... 
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 82s Preparing to unpack .../libgcc-s1_14.1.0-1ubuntu1_armhf.deb ...
 82s Unpacking libgcc-s1:armhf (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
 82s Setting up libgcc-s1:armhf (14.1.0-1ubuntu1) ...
 82s (Reading database ... 
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 82s Preparing to unpack .../libstdc++6_14.1.0-1ubuntu1_armhf.deb ...
 82s Unpacking libstdc++6:armhf (14.1.0-1ubuntu1) over (14-20240412-0ubuntu1) ...
 82s Setting up libstdc++6:armhf (14.1.0-1ubuntu1) ...
 82s (Reading database ... 
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 82s Preparing to unpack .../libc6_2.39-0ubuntu8.1_armhf.deb ...
 82s Unpacking libc6:armhf (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
 82s Setting up libc6:armhf (2.39-0ubuntu8.1) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../libgcrypt20_1.10.3-3_armhf.deb ...
 83s Unpacking libgcrypt20:armhf (1.10.3-3) over (1.10.3-2build1) ...
 83s Setting up libgcrypt20:armhf (1.10.3-3) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../liblz4-1_1.9.4-2_armhf.deb ...
 83s Unpacking liblz4-1:armhf (1.9.4-2) over (1.9.4-1build1) ...
 83s Setting up liblz4-1:armhf (1.9.4-2) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../libapt-pkg6.0t64_2.9.3_armhf.deb ...
 83s Unpacking libapt-pkg6.0t64:armhf (2.9.3) over (2.7.14build2) ...
 83s Setting up libapt-pkg6.0t64:armhf (2.9.3) ...
 83s (Reading database ... 
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 83s Preparing to unpack .../dpkg_1.22.6ubuntu10_armhf.deb ...
 83s Unpacking dpkg (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
 83s Setting up dpkg (1.22.6ubuntu10) ...
 84s (Reading database ... 
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 84s Preparing to unpack .../libperl5.38t64_5.38.2-4_armhf.deb ...
 84s Unpacking libperl5.38t64:armhf (5.38.2-4) over (5.38.2-3.2build2) ...
 84s Preparing to unpack .../perl_5.38.2-4_armhf.deb ...
 84s Unpacking perl (5.38.2-4) over (5.38.2-3.2build2) ...
 84s Preparing to unpack .../perl-base_5.38.2-4_armhf.deb ...
 84s Unpacking perl-base (5.38.2-4) over (5.38.2-3.2build2) ...
 84s Setting up perl-base (5.38.2-4) ...
 84s (Reading database ... 
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 84s Preparing to unpack .../perl-modules-5.38_5.38.2-4_all.deb ...
 84s Unpacking perl-modules-5.38 (5.38.2-4) over (5.38.2-3.2build2) ...
 85s Preparing to unpack .../libc-bin_2.39-0ubuntu8.1_armhf.deb ...
 85s Unpacking libc-bin (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
 85s Setting up libc-bin (2.39-0ubuntu8.1) ...
 85s (Reading database ... 
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 85s Preparing to unpack .../archives/apt_2.9.3_armhf.deb ...
 85s Unpacking apt (2.9.3) over (2.7.14build2) ...
 85s Setting up apt (2.9.3) ...
 86s (Reading database ... 
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 86s Preparing to unpack .../00-apt-utils_2.9.3_armhf.deb ...
 86s Unpacking apt-utils (2.9.3) over (2.7.14build2) ...
 86s Preparing to unpack .../01-liblocale-gettext-perl_1.07-7_armhf.deb ...
 86s Unpacking liblocale-gettext-perl (1.07-7) over (1.07-6ubuntu5) ...
 86s Preparing to unpack .../02-rsync_3.3.0-1_armhf.deb ...
 86s Unpacking rsync (3.3.0-1) over (3.2.7-1ubuntu1) ...
 86s Preparing to unpack .../03-dhcpcd-base_1%3a10.0.6-5_armhf.deb ...
 86s Unpacking dhcpcd-base (1:10.0.6-5) over (1:10.0.6-4) ...
 86s Preparing to unpack .../04-gir1.2-girepository-2.0_1.80.1-3_armhf.deb ...
 86s Unpacking gir1.2-girepository-2.0:armhf (1.80.1-3) over (1.80.1-1) ...
 86s Preparing to unpack .../05-gir1.2-glib-2.0_2.80.2-1ubuntu1_armhf.deb ...
 86s Unpacking gir1.2-glib-2.0:armhf (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
 86s Preparing to unpack .../06-libglib2.0-0t64_2.80.2-1ubuntu1_armhf.deb ...
 86s Unpacking libglib2.0-0t64:armhf (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
 86s Preparing to unpack .../07-libgirepository-1.0-1_1.80.1-3_armhf.deb ...
 86s Unpacking libgirepository-1.0-1:armhf (1.80.1-3) over (1.80.1-1) ...
 86s Preparing to unpack .../08-iproute2_6.9.0-1_armhf.deb ...
 86s Unpacking iproute2 (6.9.0-1) over (6.1.0-1ubuntu6) ...
 86s dpkg: warning: unable to delete old directory '/etc/iproute2/rt_tables.d': Directory not empty
 86s dpkg: warning: unable to delete old directory '/etc/iproute2/rt_protos.d': Directory not empty
 86s dpkg: warning: unable to delete old directory '/etc/iproute2': Directory not empty
 86s Preparing to unpack .../09-libbsd0_0.12.2-1_armhf.deb ...
 86s Unpacking libbsd0:armhf (0.12.2-1) over (0.12.1-1build1) ...
 86s Preparing to unpack .../10-libglib2.0-data_2.80.2-1ubuntu1_all.deb ...
 86s Unpacking libglib2.0-data (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
 86s Preparing to unpack .../11-libsqlite3-0_3.45.3-1_armhf.deb ...
 86s Unpacking libsqlite3-0:armhf (3.45.3-1) over (3.45.1-1ubuntu2) ...
 86s Preparing to unpack .../12-locales_2.39-0ubuntu8.1_all.deb ...
 86s Unpacking locales (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
 87s Preparing to unpack .../13-python-apt-common_2.9.0_all.deb ...
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 89s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10.1) ...
 89s Setting up locales (2.39-0ubuntu8.1) ...
 89s Generating locales (this might take a while)...
 91s   en_US.UTF-8... done
 91s Generation complete.
 91s Setting up xxd (2:9.1.0377-1ubuntu1) ...
 91s Setting up tzdata (2024a-4ubuntu1) ...
 91s 
 91s Current default time zone: 'Etc/UTC'
 91s Local time is now:      Fri May 24 08:37:12 UTC 2024.
 91s Universal Time is now:  Fri May 24 08:37:12 UTC 2024.
 91s Run 'dpkg-reconfigure tzdata' if you wish to change it.
 91s 
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 92s Setting up libglib2.0-0t64:armhf (2.80.2-1ubuntu1) ...
 92s No schema files found: doing nothing.
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 92s Setting up groff-base (1.23.0-4) ...
 92s Setting up libgirepository-1.0-1:armhf (1.80.1-3) ...
 92s Setting up libevent-core-2.1-7t64:armhf (2.1.12-stable-10) ...
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 93s rsync.service is a disabled or a static unit not running, not starting it.
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 93s Setting up vim-tiny (2:9.1.0377-1ubuntu1) ...
 93s Setting up man-db (2.12.1-1) ...
 93s Updating database of manual pages ...
 95s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
 95s 
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 95s Setting up perl (5.38.2-4) ...
 95s Setting up gir1.2-girepository-2.0:armhf (1.80.1-3) ...
 95s Setting up libdpkg-perl (1.22.6ubuntu10) ...
 95s Setting up initramfs-tools-core (0.142ubuntu27) ...
 95s Setting up fwupd (1.9.20-1) ...
 95s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
 95s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
 96s fwupd.service is a disabled or a static unit not running, not starting it.
 96s Setting up initramfs-tools (0.142ubuntu27) ...
 96s update-initramfs: deferring update (trigger activated)
 96s Setting up dpkg-dev (1.22.6ubuntu10) ...
 96s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
 96s Processing triggers for dbus (1.14.10-4ubuntu4) ...
 96s Processing triggers for initramfs-tools (0.142ubuntu27) ...
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 98s The following packages will be REMOVED:
 98s   libatm1t64*
 98s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
 98s After this operation, 94.2 kB disk space will be freed.
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(Reading database ... 58348 files and directories currently installed.)
 98s Removing libatm1t64:armhf (1:2.5.1-5.1build1) ...
 98s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
100s autopkgtest [08:37:21]: rebooting testbed after setup commands that affected boot
143s autopkgtest [08:38:04]: testbed running kernel: Linux 5.15.0-107-generic #117-Ubuntu SMP Mon Apr 29 14:37:09 UTC 2024
171s autopkgtest [08:38:32]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sf
183s Get:1 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (dsc) [2673 B]
183s Get:2 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (tar) [1972 kB]
183s Get:3 http://ftpmaster.internal/ubuntu oracular/universe r-cran-sf 1.0-16+dfsg-1 (diff) [5052 B]
183s gpgv: Signature made Tue May  7 12:22:49 2024 UTC
183s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
183s gpgv:                issuer "tille@debian.org"
183s gpgv: Can't check signature: No public key
183s dpkg-source: warning: cannot verify inline signature for ./r-cran-sf_1.0-16+dfsg-1.dsc: no acceptable signature found
183s autopkgtest [08:38:44]: testing package r-cran-sf version 1.0-16+dfsg-1
185s autopkgtest [08:38:46]: build not needed
189s autopkgtest [08:38:50]: test run-unit-test: preparing testbed
200s Reading package lists...
200s Building dependency tree...
200s Reading state information...
200s Starting pkgProblemResolver with broken count: 0
201s Starting 2 pkgProblemResolver with broken count: 0
201s Done
201s The following additional packages will be installed:
201s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
201s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax gdal-data
201s   gdal-plugins javascript-common libaec0 libaom3 libarmadillo12 libarpack2t64
201s   libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libde265-0
201s   libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 libgdal34t64
201s   libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1
201s   libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64
201s   libhdf5-hl-100t64 libheif-plugin-aomdec libheif-plugin-libde265 libheif1
201s   libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4
201s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
201s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
201s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
201s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
201s   libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4
201s   libltdl7 liblua5.4-0 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2
201s   libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
201s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpoppler134
201s   libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5
201s   libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0
201s   libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 libwebp7
201s   libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1
201s   libxt6t64 littler mysql-common node-bootstrap-sass node-html5shiv
201s   node-normalize.css pandoc pandoc-data proj-data r-base-core r-cran-abind
201s   r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob
201s   r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-class
201s   r-cran-classint r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr
201s   r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc
201s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate
201s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs
201s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable
201s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband
201s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr
201s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
201s   r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass
201s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
201s   r-cran-nanoarrow r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar
201s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload
201s   r-cran-plogr r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises
201s   r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster
201s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang
201s   r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot
201s   r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny
201s   r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data
201s   r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet
201s   r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse
201s   r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr
201s   r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat
201s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units
201s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
201s   r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip
201s   x11-common xdg-utils zip
201s Suggested packages:
201s   apache2 | lighttpd | httpd geotiff-bin gdal-bin libgeotiff-epsg
201s   libhdf4-alt-dev hdf4-tools libheif-plugin-x265 libheif-plugin-ffmpegdec
201s   libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec
201s   libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc
201s   libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc
201s   liblcms2-utils odbc-postgresql tdsodbc ogdi-bin proj-bin tcl8.6 tk8.6 nodejs
201s   texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
201s   texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python
201s   ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info
201s   | r-doc-pdf r-mathlib r-base-html r-cran-roxygen2 r-cran-ff r-cran-kernlab
201s   r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png r-cran-jpeg
201s   r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-magick r-cran-getopt
201s   r-cran-mapproj r-cran-mapdata r-cran-formattable r-cran-nanotime
201s   r-cran-palmerpenguins r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest
201s   r-cran-spelling r-cran-bench r-cran-here r-cran-hms r-cran-plm r-cran-zoo
201s Recommended packages:
201s   proj-bin libheif-plugin-aomenc node-jquery poppler-data r-recommended
201s   r-base-dev r-doc-html r-cran-future r-cran-thematic r-cran-mockery
201s   r-cran-spelling r-cran-spdata r-cran-tinytest r-cran-htmlwidgets
201s   r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-dt r-cran-bench
201s   r-cran-decor r-cran-lobstr r-cran-progress r-cran-webutils r-cran-gh
201s   r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-unitizer r-cran-rsvg
201s   r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis
201s   r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr r-cran-markdown
201s   r-cran-testit r-cran-cairo r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp
201s   r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-magick
201s   r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot
201s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-geosphere r-cran-hms
201s   r-cran-sodium r-cran-future.apply r-cran-lubridate r-cran-bitops
201s   r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-webfakes r-cran-cba
201s   r-cran-pingr r-cran-ncdf4 r-cran-igraph r-cran-gstat r-cran-fields
201s   r-cran-exactextractr r-cran-usethis r-cran-dygraphs r-cran-rsconnect
201s   r-cran-downlit r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat
201s   r-cran-sm r-cran-gsl r-cran-locfit r-cran-spatial r-cran-nleqslv
201s   r-cran-glmnet r-cran-pcict r-cran-rnetcdf r-cran-clue r-cran-cubelyr
201s   r-cran-fnn r-cran-ggforce r-cran-ggthemes r-cran-mapdata r-cran-ncdfgeom
201s   r-cran-ncmeta r-cran-plm r-cran-randomforest r-cran-spacetime r-cran-viridis
201s   r-cran-xts r-cran-zoo r-cran-xml r-cran-data.table r-cran-formattable
201s   r-cran-pkgdown r-cran-zeallot r-cran-renv r-cran-runit libfile-mimeinfo-perl
201s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
201s The following NEW packages will be installed:
201s   autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core
201s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
201s   fonts-mathjax gdal-data gdal-plugins javascript-common libaec0 libaom3
201s   libarmadillo12 libarpack2t64 libblas3 libblosc1 libcairo2 libcfitsio10t64
201s   libdatrie1 libde265-0 libdeflate0 libfontconfig1 libfreetype6 libfreexl1
201s   libfyba0t64 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5
201s   libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt
201s   libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec
201s   libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8
201s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
201s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
201s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
201s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
201s   libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64
201s   libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 libltdl7 liblua5.4-0
201s   libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 libodbcinst2
201s   libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
201s   libpaper-utils libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25
201s   libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64
201s   libsuperlu6 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
201s   libudunits2-0 libudunits2-data liburiparser1 libwebp7 libxcb-render0
201s   libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 littler
201s   mysql-common node-bootstrap-sass node-html5shiv node-normalize.css pandoc
201s   pandoc-data proj-data r-base-core r-cran-abind r-cran-askpass
201s   r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio
201s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-class r-cran-classint
201s   r-cran-cli r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11
201s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-deldir r-cran-desc
201s   r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-e1071 r-cran-evaluate
201s   r-cran-fansi r-cran-farver r-cran-fastmap r-cran-fontawesome r-cran-fs
201s   r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-goftest r-cran-gtable
201s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband
201s   r-cran-jquerylib r-cran-jsonlite r-cran-kernsmooth r-cran-knitr
201s   r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
201s   r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-maps r-cran-mass
201s   r-cran-matrix r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
201s   r-cran-nanoarrow r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar
201s   r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload
201s   r-cran-plogr r-cran-polyclip r-cran-praise r-cran-processx r-cran-promises
201s   r-cran-proxy r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-raster
201s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang
201s   r-cran-rmarkdown r-cran-rpart r-cran-rpostgresql r-cran-rprojroot
201s   r-cran-rsqlite r-cran-s2 r-cran-sass r-cran-scales r-cran-sf r-cran-shiny
201s   r-cran-sourcetools r-cran-sp r-cran-spatstat r-cran-spatstat.data
201s   r-cran-spatstat.explore r-cran-spatstat.geom r-cran-spatstat.linnet
201s   r-cran-spatstat.model r-cran-spatstat.random r-cran-spatstat.sparse
201s   r-cran-spatstat.utils r-cran-stars r-cran-stringi r-cran-stringr
201s   r-cran-survival r-cran-sys r-cran-tensor r-cran-terra r-cran-testthat
201s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-units
201s   r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr
201s   r-cran-wk r-cran-xfun r-cran-xtable r-cran-yaml unixodbc-common unzip
201s   x11-common xdg-utils zip
201s 0 upgraded, 253 newly installed, 0 to remove and 0 not upgraded.
201s Need to get 226 MB/226 MB of archives.
201s After this operation, 625 MB of additional disk space will be used.
201s Get:1 /tmp/autopkgtest.UYjkfx/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [924 B]
202s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB]
202s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
202s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
202s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
202s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
202s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
202s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
202s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
202s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
202s Get:11 http://ftpmaster.internal/ubuntu oracular/universe armhf gdal-data all 3.8.5+dfsg-1 [261 kB]
202s Get:12 http://ftpmaster.internal/ubuntu oracular/universe armhf gdal-plugins armhf 3.8.5+dfsg-1 [24.6 kB]
202s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf javascript-common all 11+nmu1 [5936 B]
202s Get:14 http://ftpmaster.internal/ubuntu oracular/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
202s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libaom3 armhf 3.8.2-2build1 [1681 kB]
202s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB]
202s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB]
202s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB]
202s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf libarpack2t64 armhf 3.9.1-1.1build2 [88.4 kB]
202s Get:20 http://ftpmaster.internal/ubuntu oracular/universe armhf libsuperlu6 armhf 6.0.1+dfsg1-1build1 [155 kB]
202s Get:21 http://ftpmaster.internal/ubuntu oracular/universe armhf libarmadillo12 armhf 1:12.8.2+dfsg-1 [102 kB]
202s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB]
202s Get:23 http://ftpmaster.internal/ubuntu oracular/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB]
202s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB]
202s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
202s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
202s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
202s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB]
202s Get:29 http://ftpmaster.internal/ubuntu oracular/universe armhf libcfitsio10t64 armhf 4.3.1-1.1build2 [504 kB]
202s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB]
202s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libde265-0 armhf 1.0.15-1build3 [158 kB]
202s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB]
202s Get:33 http://ftpmaster.internal/ubuntu oracular/universe armhf libfyba0t64 armhf 4.1.1-11build1 [109 kB]
202s Get:34 http://ftpmaster.internal/ubuntu oracular/universe armhf libminizip1t64 armhf 1:1.3.dfsg-3.1ubuntu2 [19.9 kB]
202s Get:35 http://ftpmaster.internal/ubuntu oracular/universe armhf libfreexl1 armhf 2.0.0-1build2 [37.6 kB]
202s Get:36 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeos3.12.1t64 armhf 3.12.1-3build1 [867 kB]
203s Get:37 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeos-c1t64 armhf 3.12.1-3build1 [92.8 kB]
203s Get:38 http://ftpmaster.internal/ubuntu oracular/universe armhf proj-data all 9.4.0-1build2 [7885 kB]
203s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
203s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB]
203s Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
203s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB]
203s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB]
203s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB]
203s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB]
203s Get:46 http://ftpmaster.internal/ubuntu oracular/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB]
203s Get:47 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeotiff5 armhf 1.7.1-5build1 [52.1 kB]
203s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf libgif7 armhf 5.2.2-1ubuntu1 [32.6 kB]
203s Get:49 http://ftpmaster.internal/ubuntu oracular/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
203s Get:50 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf4-0-alt armhf 4.3.0-1 [253 kB]
203s Get:51 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB]
203s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-aomdec armhf 1.17.6-1ubuntu4 [9862 B]
203s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-libde265 armhf 1.17.6-1ubuntu4 [10.3 kB]
203s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf libheif1 armhf 1.17.6-1ubuntu4 [267 kB]
203s Get:55 http://ftpmaster.internal/ubuntu oracular/universe armhf liburiparser1 armhf 0.9.7+dfsg-2build1 [29.9 kB]
203s Get:56 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmlbase1t64 armhf 1.3.0-12build1 [45.0 kB]
203s Get:57 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmldom1t64 armhf 1.3.0-12build1 [145 kB]
203s Get:58 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmlengine1t64 armhf 1.3.0-12build1 [69.6 kB]
203s Get:59 http://ftpmaster.internal/ubuntu oracular/main armhf mysql-common all 5.8+1.1.0build1 [6746 B]
203s Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libmysqlclient21 armhf 8.0.37-1 [1265 kB]
203s Get:61 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB]
203s Get:62 http://ftpmaster.internal/ubuntu oracular/universe armhf libnetcdf19t64 armhf 1:4.9.2-5ubuntu4 [422 kB]
203s Get:63 http://ftpmaster.internal/ubuntu oracular/main armhf libltdl7 armhf 2.4.7-7build1 [37.6 kB]
203s Get:64 http://ftpmaster.internal/ubuntu oracular/main armhf libodbc2 armhf 2.3.12-1build2 [144 kB]
203s Get:65 http://ftpmaster.internal/ubuntu oracular/main armhf unixodbc-common all 2.3.12-1build2 [8646 B]
203s Get:66 http://ftpmaster.internal/ubuntu oracular/main armhf libodbcinst2 armhf 2.3.12-1build2 [30.4 kB]
203s Get:67 http://ftpmaster.internal/ubuntu oracular/universe armhf libogdi4.1 armhf 4.1.1+ds-4 [185 kB]
203s Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libopenjp2-7 armhf 2.5.0-2build3 [160 kB]
203s Get:69 http://ftpmaster.internal/ubuntu oracular/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB]
203s Get:70 http://ftpmaster.internal/ubuntu oracular/main armhf libpoppler134 armhf 24.02.0-1ubuntu9 [968 kB]
203s Get:71 http://ftpmaster.internal/ubuntu oracular/main armhf libpq5 armhf 16.2-1ubuntu4 [122 kB]
203s Get:72 http://ftpmaster.internal/ubuntu oracular/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB]
203s Get:73 http://ftpmaster.internal/ubuntu oracular/universe armhf librttopo1 armhf 1.1.0-3build2 [160 kB]
203s Get:74 http://ftpmaster.internal/ubuntu oracular/universe armhf libspatialite8t64 armhf 5.1.0-3build1 [2019 kB]
203s Get:75 http://ftpmaster.internal/ubuntu oracular/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3 [817 kB]
203s Get:76 http://ftpmaster.internal/ubuntu oracular/universe armhf libgdal34t64 armhf 3.8.5+dfsg-1 [7869 kB]
204s Get:77 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB]
204s Get:78 http://ftpmaster.internal/ubuntu oracular/main armhf libgraphite2-3 armhf 1.3.14-2build1 [64.6 kB]
204s Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf libharfbuzz0b armhf 8.3.0-2build2 [446 kB]
204s Get:80 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
204s Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf libice6 armhf 2:1.0.10-1build3 [35.4 kB]
204s Get:82 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
204s Get:83 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
204s Get:84 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
204s Get:85 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-d3 all 3.5.17-4 [132 kB]
204s Get:86 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB]
204s Get:87 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
204s Get:88 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
204s Get:89 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
204s Get:90 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
204s Get:91 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
204s Get:92 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
204s Get:93 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
204s Get:94 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
204s Get:95 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
204s Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf liblua5.4-0 armhf 5.4.6-3build2 [133 kB]
204s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf libthai-data all 0.1.29-2build1 [158 kB]
204s Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB]
204s Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf libpango-1.0-0 armhf 1.52.2+ds-1 [209 kB]
204s Get:100 http://ftpmaster.internal/ubuntu oracular/main armhf libpangoft2-1.0-0 armhf 1.52.2+ds-1 [36.4 kB]
204s Get:101 http://ftpmaster.internal/ubuntu oracular/main armhf libpangocairo-1.0-0 armhf 1.52.2+ds-1 [24.9 kB]
204s Get:102 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper1 armhf 1.1.29build1 [12.6 kB]
204s Get:103 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper-utils armhf 1.1.29build1 [8184 B]
204s Get:104 http://ftpmaster.internal/ubuntu oracular/main armhf libsm6 armhf 2:1.2.3-1build3 [14.1 kB]
204s Get:105 http://ftpmaster.internal/ubuntu oracular/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB]
205s Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
205s Get:107 http://ftpmaster.internal/ubuntu oracular/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
205s Get:108 http://ftpmaster.internal/ubuntu oracular/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB]
205s Get:109 http://ftpmaster.internal/ubuntu oracular/universe armhf libudunits2-data all 2.2.28-7build1 [19.4 kB]
205s Get:110 http://ftpmaster.internal/ubuntu oracular/universe armhf libudunits2-0 armhf 2.2.28-7build1 [47.1 kB]
205s Get:111 http://ftpmaster.internal/ubuntu oracular/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB]
205s Get:112 http://ftpmaster.internal/ubuntu oracular/main armhf zip armhf 3.0-13build1 [163 kB]
205s Get:113 http://ftpmaster.internal/ubuntu oracular/main armhf unzip armhf 6.0-28ubuntu4 [163 kB]
205s Get:114 http://ftpmaster.internal/ubuntu oracular/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
205s Get:115 http://ftpmaster.internal/ubuntu oracular/universe armhf r-base-core armhf 4.4.0-2 [28.1 MB]
208s Get:116 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-littler armhf 0.3.20-1 [82.6 kB]
208s Get:117 http://ftpmaster.internal/ubuntu oracular/universe armhf littler all 0.3.20-1 [2486 B]
208s Get:118 http://ftpmaster.internal/ubuntu oracular/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB]
208s Get:119 http://ftpmaster.internal/ubuntu oracular/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
208s Get:120 http://ftpmaster.internal/ubuntu oracular/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
208s Get:121 http://ftpmaster.internal/ubuntu oracular/universe armhf pandoc-data all 3.1.3-2build2 [78.3 kB]
208s Get:122 http://ftpmaster.internal/ubuntu oracular/universe armhf pandoc armhf 3.1.3+ds-3build1 [31.9 MB]
209s Get:123 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-abind all 1.4-5-2 [63.6 kB]
209s Get:124 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sys armhf 3.4.2-1 [43.7 kB]
209s Get:125 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-askpass armhf 1.2.0-1 [24.3 kB]
209s Get:126 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
209s Get:127 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bit armhf 4.0.5-1 [1054 kB]
209s Get:128 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bit64 armhf 4.0.5-1 [462 kB]
209s Get:129 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB]
209s Get:130 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB]
209s Get:131 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
209s Get:132 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
209s Get:133 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB]
209s Get:134 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-blob all 1.2.4-1 [49.8 kB]
209s Get:135 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-brio armhf 1.1.5-1 [37.9 kB]
209s Get:136 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fastmap armhf 1.1.1-1 [68.1 kB]
209s Get:137 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cachem armhf 1.0.8-1 [72.0 kB]
209s Get:138 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-digest armhf 0.6.35-1 [202 kB]
209s Get:139 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-htmltools armhf 0.5.8.1-1 [372 kB]
209s Get:140 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
209s Get:141 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB]
209s Get:142 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB]
209s Get:143 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mime armhf 0.12-2 [35.5 kB]
209s Get:144 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fs armhf 1.6.3+dfsg-1build2 [226 kB]
209s Get:145 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
209s Get:146 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB]
209s Get:147 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sass armhf 0.4.9+dfsg-1 [926 kB]
209s Get:148 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
209s Get:149 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-ps armhf 1.7.6-1 [310 kB]
209s Get:150 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-processx armhf 3.8.3-1 [334 kB]
209s Get:151 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-callr all 3.7.6-1 [458 kB]
209s Get:152 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mass armhf 7.3-60.0.1-1 [1118 kB]
209s Get:153 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-class armhf 7.3-22-2build1 [87.0 kB]
209s Get:154 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB]
210s Get:155 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-e1071 armhf 1.7-14-1 [551 kB]
210s Get:156 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-kernsmooth armhf 2.23-24-1 [91.1 kB]
210s Get:157 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-classint armhf 0.4-10+dfsg-1 [105 kB]
210s Get:158 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB]
210s Get:159 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
210s Get:160 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lazyeval armhf 0.2.2-1build1 [142 kB]
210s Get:161 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rex all 1.2.1-1 [129 kB]
210s Get:162 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-curl armhf 5.2.0+dfsg-1build2 [175 kB]
210s Get:163 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-openssl armhf 2.1.1+dfsg-2build2 [398 kB]
210s Get:164 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
210s Get:165 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-crayon all 1.5.2-1 [164 kB]
210s Get:166 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-withr all 2.5.0-1 [225 kB]
210s Get:167 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-yaml armhf 2.3.8-2 [100 kB]
210s Get:168 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-covr armhf 3.6.4+dfsg-1 [302 kB]
210s Get:169 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cpp11 all 0.4.7-1 [266 kB]
210s Get:170 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-dbi all 1.2.2-1 [823 kB]
210s Get:171 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-deldir armhf 2.0-4-1build1 [268 kB]
210s Get:172 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-desc all 1.4.3-1 [359 kB]
210s Get:173 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB]
210s Get:174 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-generics all 0.1.3-1 [81.3 kB]
210s Get:175 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
210s Get:176 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
210s Get:177 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB]
210s Get:178 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
210s Get:179 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
210s Get:180 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB]
210s Get:181 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [218 kB]
210s Get:182 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-dplyr armhf 1.1.4-1 [1510 kB]
210s Get:183 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB]
210s Get:184 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-farver armhf 2.1.1-2 [1353 kB]
210s Get:185 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fontawesome all 0.5.2-1 [1300 kB]
210s Get:186 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
210s Get:187 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB]
210s Get:188 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lattice armhf 0.22-6-1 [1363 kB]
210s Get:189 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-nlme armhf 3.1.164-1build1 [2248 kB]
210s Get:190 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-matrix armhf 1.6-5-1 [3762 kB]
210s Get:191 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB]
210s Get:192 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB]
210s Get:193 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB]
210s Get:194 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
210s Get:195 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB]
210s Get:196 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-scales all 1.3.0-1 [603 kB]
210s Get:197 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
210s Get:198 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-goftest armhf 1.2-3-1 [58.6 kB]
210s Get:199 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-xfun armhf 0.44+dfsg-1 [517 kB]
210s Get:200 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-highr all 0.10+dfsg-2 [38.5 kB]
210s Get:201 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
210s Get:202 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rcpp armhf 1.0.12-1 [1968 kB]
211s Get:203 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-later armhf 1.3.2+dfsg-1 [118 kB]
211s Get:204 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-promises armhf 1.3.0+dfsg-1 [285 kB]
211s Get:205 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-httpuv armhf 1.6.15+dfsg-1 [480 kB]
211s Get:206 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
211s Get:207 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-knitr all 1.46+dfsg-1 [911 kB]
211s Get:208 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-units armhf 0.8-5+dfsg-1 [270 kB]
211s Get:209 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-wk armhf 0.9.1-1 [1781 kB]
211s Get:210 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-s2 armhf 1.1.6-1build2 [1895 kB]
211s Get:211 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sf armhf 1.0-16+dfsg-1 [3038 kB]
212s Get:212 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lwgeom armhf 0.2-13-3build2 [365 kB]
212s Get:213 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-maps armhf 3.4.2-1 [2355 kB]
212s Get:214 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-nanoarrow armhf 0.4.0-1 [281 kB]
212s Get:215 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pbapply all 1.7-2-1 [102 kB]
212s Get:216 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgbuild all 1.4.3-1 [209 kB]
212s Get:217 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rprojroot all 2.0.4-1 [124 kB]
212s Get:218 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgload all 1.3.4-1 [207 kB]
212s Get:219 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-plogr all 0.2.0-3build1 [15.1 kB]
212s Get:220 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-polyclip armhf 1.10-6-1 [107 kB]
212s Get:221 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-praise all 1.0.0-4build1 [20.3 kB]
212s Get:222 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-purrr armhf 1.0.2-1 [499 kB]
212s Get:223 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sp armhf 1:2.1-2+dfsg-1 [1445 kB]
212s Get:224 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-terra armhf 1.7-65-1build2 [3556 kB]
212s Get:225 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-raster armhf 3.6-26-1 [3093 kB]
212s Get:226 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
212s Get:227 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stringi armhf 1.8.3-1 [859 kB]
212s Get:228 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stringr all 1.5.1-1 [290 kB]
212s Get:229 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tinytex all 0.49-1 [141 kB]
212s Get:230 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-modernizr all 3.13.0-0.1 [101 kB]
212s Get:231 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
212s Get:232 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sourcetools armhf 0.1.7-1-1 [45.7 kB]
212s Get:233 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
212s Get:234 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
212s Get:235 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
212s Get:236 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-survival armhf 3.5-8-1 [6104 kB]
212s Get:237 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rpart armhf 4.1.23-1build1 [657 kB]
212s Get:238 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rpostgresql armhf 0.7-6+dfsg-1 [371 kB]
212s Get:239 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rsqlite armhf 2.3.4-1 [1210 kB]
212s Get:240 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.utils armhf 3.0-4-1 [359 kB]
212s Get:241 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.data all 3.0-4-1 [4090 kB]
212s Get:242 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.geom armhf 3.2-9-1 [3924 kB]
213s Get:243 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.random armhf 3.2-3-1 [1152 kB]
213s Get:244 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tensor all 1.5-4 [15.7 kB]
213s Get:245 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.sparse armhf 3.0-3-1 [213 kB]
213s Get:246 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.explore armhf 3.2-5-1 [3267 kB]
213s Get:247 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.model armhf 3.2-11-1 [3385 kB]
213s Get:248 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.linnet armhf 3.1-5-1 [1465 kB]
213s Get:249 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat armhf 3.0-7-1 [3817 kB]
213s Get:250 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stars all 0.6-4-1 [4030 kB]
213s Get:251 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-waldo all 0.5.2-1build1 [120 kB]
213s Get:252 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-testthat armhf 3.2.1-1 [1666 kB]
213s Get:253 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tidyr armhf 1.3.1-1 [1152 kB]
214s Preconfiguring packages ...
214s Fetched 226 MB in 12s (19.0 MB/s)
214s Selecting previously unselected package libfreetype6:armhf.
214s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58342 files and directories currently installed.)
214s Preparing to unpack .../000-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ...
214s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ...
214s Selecting previously unselected package fonts-dejavu-mono.
214s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ...
214s Unpacking fonts-dejavu-mono (2.37-8) ...
214s Selecting previously unselected package fonts-dejavu-core.
214s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ...
214s Unpacking fonts-dejavu-core (2.37-8) ...
214s Selecting previously unselected package fontconfig-config.
214s Preparing to unpack .../003-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
214s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
214s Selecting previously unselected package libfontconfig1:armhf.
214s Preparing to unpack .../004-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ...
214s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
214s Selecting previously unselected package fontconfig.
214s Preparing to unpack .../005-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ...
214s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
214s Selecting previously unselected package fonts-font-awesome.
214s Preparing to unpack .../006-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
214s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
215s Selecting previously unselected package fonts-glyphicons-halflings.
215s Preparing to unpack .../007-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
215s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
215s Selecting previously unselected package fonts-mathjax.
215s Preparing to unpack .../008-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
215s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
215s Selecting previously unselected package gdal-data.
215s Preparing to unpack .../009-gdal-data_3.8.5+dfsg-1_all.deb ...
215s Unpacking gdal-data (3.8.5+dfsg-1) ...
215s Selecting previously unselected package gdal-plugins:armhf.
215s Preparing to unpack .../010-gdal-plugins_3.8.5+dfsg-1_armhf.deb ...
215s Unpacking gdal-plugins:armhf (3.8.5+dfsg-1) ...
215s Selecting previously unselected package javascript-common.
215s Preparing to unpack .../011-javascript-common_11+nmu1_all.deb ...
215s Unpacking javascript-common (11+nmu1) ...
215s Selecting previously unselected package libaec0:armhf.
215s Preparing to unpack .../012-libaec0_1.1.3-1_armhf.deb ...
215s Unpacking libaec0:armhf (1.1.3-1) ...
215s Selecting previously unselected package libaom3:armhf.
215s Preparing to unpack .../013-libaom3_3.8.2-2build1_armhf.deb ...
215s Unpacking libaom3:armhf (3.8.2-2build1) ...
215s Selecting previously unselected package libblas3:armhf.
215s Preparing to unpack .../014-libblas3_3.12.0-3build1_armhf.deb ...
215s Unpacking libblas3:armhf (3.12.0-3build1) ...
215s Selecting previously unselected package libgfortran5:armhf.
215s Preparing to unpack .../015-libgfortran5_14.1.0-1ubuntu1_armhf.deb ...
215s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ...
215s Selecting previously unselected package liblapack3:armhf.
215s Preparing to unpack .../016-liblapack3_3.12.0-3build1_armhf.deb ...
215s Unpacking liblapack3:armhf (3.12.0-3build1) ...
215s Selecting previously unselected package libarpack2t64:armhf.
215s Preparing to unpack .../017-libarpack2t64_3.9.1-1.1build2_armhf.deb ...
215s Unpacking libarpack2t64:armhf (3.9.1-1.1build2) ...
215s Selecting previously unselected package libsuperlu6:armhf.
215s Preparing to unpack .../018-libsuperlu6_6.0.1+dfsg1-1build1_armhf.deb ...
215s Unpacking libsuperlu6:armhf (6.0.1+dfsg1-1build1) ...
215s Selecting previously unselected package libarmadillo12.
215s Preparing to unpack .../019-libarmadillo12_1%3a12.8.2+dfsg-1_armhf.deb ...
215s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ...
215s Selecting previously unselected package libsnappy1v5:armhf.
215s Preparing to unpack .../020-libsnappy1v5_1.2.1-1_armhf.deb ...
215s Unpacking libsnappy1v5:armhf (1.2.1-1) ...
215s Selecting previously unselected package libblosc1:armhf.
215s Preparing to unpack .../021-libblosc1_1.21.5+ds-1build1_armhf.deb ...
215s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ...
215s Selecting previously unselected package libpixman-1-0:armhf.
215s Preparing to unpack .../022-libpixman-1-0_0.42.2-1build1_armhf.deb ...
215s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ...
215s Selecting previously unselected package libxcb-render0:armhf.
215s Preparing to unpack .../023-libxcb-render0_1.17.0-2_armhf.deb ...
215s Unpacking libxcb-render0:armhf (1.17.0-2) ...
215s Selecting previously unselected package libxcb-shm0:armhf.
215s Preparing to unpack .../024-libxcb-shm0_1.17.0-2_armhf.deb ...
215s Unpacking libxcb-shm0:armhf (1.17.0-2) ...
215s Selecting previously unselected package libxrender1:armhf.
215s Preparing to unpack .../025-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
215s Unpacking libxrender1:armhf (1:0.9.10-1.1build1) ...
215s Selecting previously unselected package libcairo2:armhf.
215s Preparing to unpack .../026-libcairo2_1.18.0-3build1_armhf.deb ...
215s Unpacking libcairo2:armhf (1.18.0-3build1) ...
215s Selecting previously unselected package libcfitsio10t64:armhf.
215s Preparing to unpack .../027-libcfitsio10t64_4.3.1-1.1build2_armhf.deb ...
215s Unpacking libcfitsio10t64:armhf (4.3.1-1.1build2) ...
215s Selecting previously unselected package libdatrie1:armhf.
215s Preparing to unpack .../028-libdatrie1_0.2.13-3build1_armhf.deb ...
215s Unpacking libdatrie1:armhf (0.2.13-3build1) ...
215s Selecting previously unselected package libde265-0:armhf.
215s Preparing to unpack .../029-libde265-0_1.0.15-1build3_armhf.deb ...
215s Unpacking libde265-0:armhf (1.0.15-1build3) ...
215s Selecting previously unselected package libdeflate0:armhf.
215s Preparing to unpack .../030-libdeflate0_1.20-1_armhf.deb ...
215s Unpacking libdeflate0:armhf (1.20-1) ...
215s Selecting previously unselected package libfyba0t64:armhf.
215s Preparing to unpack .../031-libfyba0t64_4.1.1-11build1_armhf.deb ...
215s Unpacking libfyba0t64:armhf (4.1.1-11build1) ...
215s Selecting previously unselected package libminizip1t64:armhf.
215s Preparing to unpack .../032-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ...
215s Unpacking libminizip1t64:armhf (1:1.3.dfsg-3.1ubuntu2) ...
215s Selecting previously unselected package libfreexl1:armhf.
216s Preparing to unpack .../033-libfreexl1_2.0.0-1build2_armhf.deb ...
216s Unpacking libfreexl1:armhf (2.0.0-1build2) ...
216s Selecting previously unselected package libgeos3.12.1t64:armhf.
216s Preparing to unpack .../034-libgeos3.12.1t64_3.12.1-3build1_armhf.deb ...
216s Unpacking libgeos3.12.1t64:armhf (3.12.1-3build1) ...
216s Selecting previously unselected package libgeos-c1t64:armhf.
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216s Selecting previously unselected package libjbig0:armhf.
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216s Selecting previously unselected package libjpeg-turbo8:armhf.
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216s Preparing to unpack .../039-libjpeg8_8c-2ubuntu11_armhf.deb ...
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216s Selecting previously unselected package liblerc4:armhf.
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216s Selecting previously unselected package libsharpyuv0:armhf.
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216s Selecting previously unselected package libwebp7:armhf.
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216s Selecting previously unselected package libtiff6:armhf.
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216s Selecting previously unselected package libproj25:armhf.
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216s Selecting previously unselected package libgeotiff5:armhf.
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216s Selecting previously unselected package libsz2:armhf.
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216s Selecting previously unselected package libhdf4-0-alt:armhf.
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216s Selecting previously unselected package libhdf5-103-1t64:armhf.
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216s Selecting previously unselected package liburiparser1:armhf.
216s Preparing to unpack .../053-liburiparser1_0.9.7+dfsg-2build1_armhf.deb ...
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216s Selecting previously unselected package libkmlbase1t64:armhf.
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216s Selecting previously unselected package libkmlengine1t64:armhf.
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216s Selecting previously unselected package mysql-common.
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216s Selecting previously unselected package libmysqlclient21:armhf.
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216s Selecting previously unselected package libhdf5-hl-100t64:armhf.
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216s Selecting previously unselected package libnetcdf19t64:armhf.
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216s Selecting previously unselected package libltdl7:armhf.
217s Preparing to unpack .../061-libltdl7_2.4.7-7build1_armhf.deb ...
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217s Selecting previously unselected package libodbc2:armhf.
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217s Selecting previously unselected package libodbcinst2:armhf.
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217s Selecting previously unselected package libogdi4.1:armhf.
217s Preparing to unpack .../065-libogdi4.1_4.1.1+ds-4_armhf.deb ...
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217s Selecting previously unselected package libopenjp2-7:armhf.
217s Preparing to unpack .../066-libopenjp2-7_2.5.0-2build3_armhf.deb ...
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217s Selecting previously unselected package liblcms2-2:armhf.
217s Preparing to unpack .../067-liblcms2-2_2.14-2build1_armhf.deb ...
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217s Selecting previously unselected package libpoppler134:armhf.
217s Preparing to unpack .../068-libpoppler134_24.02.0-1ubuntu9_armhf.deb ...
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217s Selecting previously unselected package libpq5:armhf.
217s Preparing to unpack .../069-libpq5_16.2-1ubuntu4_armhf.deb ...
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217s Selecting previously unselected package libqhull-r8.0:armhf.
217s Preparing to unpack .../070-libqhull-r8.0_2020.2-6build1_armhf.deb ...
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217s Selecting previously unselected package librttopo1:armhf.
217s Preparing to unpack .../071-librttopo1_1.1.0-3build2_armhf.deb ...
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217s Selecting previously unselected package libspatialite8t64:armhf.
217s Preparing to unpack .../072-libspatialite8t64_5.1.0-3build1_armhf.deb ...
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217s Selecting previously unselected package libxerces-c3.2t64:armhf.
217s Preparing to unpack .../073-libxerces-c3.2t64_3.2.4+debian-1.3_armhf.deb ...
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217s Selecting previously unselected package libgdal34t64:armhf.
217s Preparing to unpack .../074-libgdal34t64_3.8.5+dfsg-1_armhf.deb ...
217s Unpacking libgdal34t64:armhf (3.8.5+dfsg-1) ...
217s Selecting previously unselected package libgomp1:armhf.
217s Preparing to unpack .../075-libgomp1_14.1.0-1ubuntu1_armhf.deb ...
217s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ...
217s Selecting previously unselected package libgraphite2-3:armhf.
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217s Selecting previously unselected package libharfbuzz0b:armhf.
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217s Selecting previously unselected package x11-common.
217s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu3_all.deb ...
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217s Selecting previously unselected package libice6:armhf.
217s Preparing to unpack .../079-libice6_2%3a1.0.10-1build3_armhf.deb ...
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217s Selecting previously unselected package libjs-bootstrap.
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217s Selecting previously unselected package libjs-popper.js.
217s Preparing to unpack .../081-libjs-popper.js_1.16.1+ds-6_all.deb ...
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217s Selecting previously unselected package libjs-bootstrap4.
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217s Selecting previously unselected package libjs-d3.
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217s Selecting previously unselected package libjs-es5-shim.
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217s Selecting previously unselected package libjs-highlight.js.
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218s Selecting previously unselected package libjs-jquery-datatables.
218s Preparing to unpack .../087-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
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218s Selecting previously unselected package libjs-sifter.js.
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218s Selecting previously unselected package libjs-microplugin.js.
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218s Selecting previously unselected package libjs-jquery-selectize.js.
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218s Selecting previously unselected package liblua5.4-0:armhf.
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218s Selecting previously unselected package libthai-data.
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218s Selecting previously unselected package libthai0:armhf.
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218s Selecting previously unselected package libpango-1.0-0:armhf.
218s Preparing to unpack .../097-libpango-1.0-0_1.52.2+ds-1_armhf.deb ...
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218s Selecting previously unselected package libpangoft2-1.0-0:armhf.
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218s Selecting previously unselected package libpangocairo-1.0-0:armhf.
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218s Unpacking libpangocairo-1.0-0:armhf (1.52.2+ds-1) ...
218s Selecting previously unselected package libpaper1:armhf.
218s Preparing to unpack .../100-libpaper1_1.1.29build1_armhf.deb ...
218s Unpacking libpaper1:armhf (1.1.29build1) ...
218s Selecting previously unselected package libpaper-utils.
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218s Selecting previously unselected package libsm6:armhf.
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218s Selecting previously unselected package libtcl8.6:armhf.
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218s Selecting previously unselected package libxft2:armhf.
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218s Selecting previously unselected package libxss1:armhf.
218s Preparing to unpack .../105-libxss1_1%3a1.2.3-1build3_armhf.deb ...
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218s Selecting previously unselected package libtk8.6:armhf.
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218s Selecting previously unselected package libudunits2-data.
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218s Selecting previously unselected package libxt6t64:armhf.
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219s Selecting previously unselected package xdg-utils.
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219s Selecting previously unselected package r-base-core.
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219s Selecting previously unselected package pandoc-data.
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220s Selecting previously unselected package r-cran-abind.
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220s Selecting previously unselected package r-cran-base64enc.
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220s Selecting previously unselected package r-cran-bit64.
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221s Selecting previously unselected package r-cran-rlang.
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221s Selecting previously unselected package r-cran-cli.
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221s Selecting previously unselected package r-cran-glue.
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221s Selecting previously unselected package r-cran-lifecycle.
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221s Selecting previously unselected package r-cran-vctrs.
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221s Selecting previously unselected package r-cran-blob.
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221s Selecting previously unselected package r-cran-cachem.
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221s Selecting previously unselected package r-cran-digest.
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221s Selecting previously unselected package r-cran-htmltools.
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221s Unpacking r-cran-htmltools (0.5.8.1-1) ...
221s Selecting previously unselected package r-cran-jquerylib.
221s Preparing to unpack .../138-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
221s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
221s Selecting previously unselected package r-cran-jsonlite.
221s Preparing to unpack .../139-r-cran-jsonlite_1.8.8+dfsg-1_armhf.deb ...
221s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
221s Selecting previously unselected package r-cran-memoise.
221s Preparing to unpack .../140-r-cran-memoise_2.0.1-1_all.deb ...
221s Unpacking r-cran-memoise (2.0.1-1) ...
221s Selecting previously unselected package r-cran-mime.
221s Preparing to unpack .../141-r-cran-mime_0.12-2_armhf.deb ...
221s Unpacking r-cran-mime (0.12-2) ...
221s Selecting previously unselected package r-cran-fs.
221s Preparing to unpack .../142-r-cran-fs_1.6.3+dfsg-1build2_armhf.deb ...
221s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
221s Selecting previously unselected package r-cran-r6.
221s Preparing to unpack .../143-r-cran-r6_2.5.1-1_all.deb ...
221s Unpacking r-cran-r6 (2.5.1-1) ...
222s Selecting previously unselected package r-cran-rappdirs.
222s Preparing to unpack .../144-r-cran-rappdirs_0.3.3-1_armhf.deb ...
222s Unpacking r-cran-rappdirs (0.3.3-1) ...
222s Selecting previously unselected package r-cran-sass.
222s Preparing to unpack .../145-r-cran-sass_0.4.9+dfsg-1_armhf.deb ...
222s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
222s Selecting previously unselected package r-cran-bslib.
222s Preparing to unpack .../146-r-cran-bslib_0.7.0+dfsg-1_all.deb ...
222s Unpacking r-cran-bslib (0.7.0+dfsg-1) ...
222s Selecting previously unselected package r-cran-ps.
222s Preparing to unpack .../147-r-cran-ps_1.7.6-1_armhf.deb ...
222s Unpacking r-cran-ps (1.7.6-1) ...
222s Selecting previously unselected package r-cran-processx.
222s Preparing to unpack .../148-r-cran-processx_3.8.3-1_armhf.deb ...
222s Unpacking r-cran-processx (3.8.3-1) ...
222s Selecting previously unselected package r-cran-callr.
222s Preparing to unpack .../149-r-cran-callr_3.7.6-1_all.deb ...
222s Unpacking r-cran-callr (3.7.6-1) ...
222s Selecting previously unselected package r-cran-mass.
222s Preparing to unpack .../150-r-cran-mass_7.3-60.0.1-1_armhf.deb ...
222s Unpacking r-cran-mass (7.3-60.0.1-1) ...
222s Selecting previously unselected package r-cran-class.
222s Preparing to unpack .../151-r-cran-class_7.3-22-2build1_armhf.deb ...
222s Unpacking r-cran-class (7.3-22-2build1) ...
222s Selecting previously unselected package r-cran-proxy.
222s Preparing to unpack .../152-r-cran-proxy_0.4-27-1_armhf.deb ...
222s Unpacking r-cran-proxy (0.4-27-1) ...
222s Selecting previously unselected package r-cran-e1071.
222s Preparing to unpack .../153-r-cran-e1071_1.7-14-1_armhf.deb ...
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222s Selecting previously unselected package r-cran-kernsmooth.
222s Preparing to unpack .../154-r-cran-kernsmooth_2.23-24-1_armhf.deb ...
222s Unpacking r-cran-kernsmooth (2.23-24-1) ...
222s Selecting previously unselected package r-cran-classint.
222s Preparing to unpack .../155-r-cran-classint_0.4-10+dfsg-1_armhf.deb ...
222s Unpacking r-cran-classint (0.4-10+dfsg-1) ...
222s Selecting previously unselected package r-cran-colorspace.
222s Preparing to unpack .../156-r-cran-colorspace_2.1-0+dfsg-1_armhf.deb ...
222s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
222s Selecting previously unselected package r-cran-commonmark.
222s Preparing to unpack .../157-r-cran-commonmark_1.9.1-1_armhf.deb ...
222s Unpacking r-cran-commonmark (1.9.1-1) ...
222s Selecting previously unselected package r-cran-lazyeval.
222s Preparing to unpack .../158-r-cran-lazyeval_0.2.2-1build1_armhf.deb ...
222s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
222s Selecting previously unselected package r-cran-rex.
222s Preparing to unpack .../159-r-cran-rex_1.2.1-1_all.deb ...
222s Unpacking r-cran-rex (1.2.1-1) ...
222s Selecting previously unselected package r-cran-curl.
222s Preparing to unpack .../160-r-cran-curl_5.2.0+dfsg-1build2_armhf.deb ...
222s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ...
222s Selecting previously unselected package r-cran-openssl.
222s Preparing to unpack .../161-r-cran-openssl_2.1.1+dfsg-2build2_armhf.deb ...
222s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ...
222s Selecting previously unselected package r-cran-httr.
222s Preparing to unpack .../162-r-cran-httr_1.4.7+dfsg-1_all.deb ...
222s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
222s Selecting previously unselected package r-cran-crayon.
222s Preparing to unpack .../163-r-cran-crayon_1.5.2-1_all.deb ...
222s Unpacking r-cran-crayon (1.5.2-1) ...
222s Selecting previously unselected package r-cran-withr.
222s Preparing to unpack .../164-r-cran-withr_2.5.0-1_all.deb ...
222s Unpacking r-cran-withr (2.5.0-1) ...
223s Selecting previously unselected package r-cran-yaml.
223s Preparing to unpack .../165-r-cran-yaml_2.3.8-2_armhf.deb ...
223s Unpacking r-cran-yaml (2.3.8-2) ...
223s Selecting previously unselected package r-cran-covr.
223s Preparing to unpack .../166-r-cran-covr_3.6.4+dfsg-1_armhf.deb ...
223s Unpacking r-cran-covr (3.6.4+dfsg-1) ...
223s Selecting previously unselected package r-cran-cpp11.
223s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ...
223s Unpacking r-cran-cpp11 (0.4.7-1) ...
223s Selecting previously unselected package r-cran-dbi.
223s Preparing to unpack .../168-r-cran-dbi_1.2.2-1_all.deb ...
223s Unpacking r-cran-dbi (1.2.2-1) ...
223s Selecting previously unselected package r-cran-deldir.
223s Preparing to unpack .../169-r-cran-deldir_2.0-4-1build1_armhf.deb ...
223s Unpacking r-cran-deldir (2.0-4-1build1) ...
223s Selecting previously unselected package r-cran-desc.
223s Preparing to unpack .../170-r-cran-desc_1.4.3-1_all.deb ...
223s Unpacking r-cran-desc (1.4.3-1) ...
223s Selecting previously unselected package r-cran-diffobj.
223s Preparing to unpack .../171-r-cran-diffobj_0.3.5-1_armhf.deb ...
223s Unpacking r-cran-diffobj (0.3.5-1) ...
223s Selecting previously unselected package r-cran-generics.
223s Preparing to unpack .../172-r-cran-generics_0.1.3-1_all.deb ...
223s Unpacking r-cran-generics (0.1.3-1) ...
223s Selecting previously unselected package r-cran-magrittr.
223s Preparing to unpack .../173-r-cran-magrittr_2.0.3-1_armhf.deb ...
223s Unpacking r-cran-magrittr (2.0.3-1) ...
223s Selecting previously unselected package r-cran-fansi.
223s Preparing to unpack .../174-r-cran-fansi_1.0.5-1_armhf.deb ...
223s Unpacking r-cran-fansi (1.0.5-1) ...
223s Selecting previously unselected package r-cran-utf8.
223s Preparing to unpack .../175-r-cran-utf8_1.2.4-1_armhf.deb ...
223s Unpacking r-cran-utf8 (1.2.4-1) ...
223s Selecting previously unselected package r-cran-pillar.
223s Preparing to unpack .../176-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
223s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
223s Selecting previously unselected package r-cran-pkgconfig.
223s Preparing to unpack .../177-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
223s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
223s Selecting previously unselected package r-cran-tibble.
223s Preparing to unpack .../178-r-cran-tibble_3.2.1+dfsg-2_armhf.deb ...
223s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
223s Selecting previously unselected package r-cran-tidyselect.
223s Preparing to unpack .../179-r-cran-tidyselect_1.2.0+dfsg-1_armhf.deb ...
223s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
223s Selecting previously unselected package r-cran-dplyr.
223s Preparing to unpack .../180-r-cran-dplyr_1.1.4-1_armhf.deb ...
223s Unpacking r-cran-dplyr (1.1.4-1) ...
223s Selecting previously unselected package r-cran-evaluate.
223s Preparing to unpack .../181-r-cran-evaluate_0.23-1_all.deb ...
223s Unpacking r-cran-evaluate (0.23-1) ...
223s Selecting previously unselected package r-cran-farver.
223s Preparing to unpack .../182-r-cran-farver_2.1.1-2_armhf.deb ...
223s Unpacking r-cran-farver (2.1.1-2) ...
223s Selecting previously unselected package r-cran-fontawesome.
223s Preparing to unpack .../183-r-cran-fontawesome_0.5.2-1_all.deb ...
223s Unpacking r-cran-fontawesome (0.5.2-1) ...
224s Selecting previously unselected package r-cran-gtable.
224s Preparing to unpack .../184-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
224s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
224s Selecting previously unselected package r-cran-isoband.
224s Preparing to unpack .../185-r-cran-isoband_0.2.7-1_armhf.deb ...
224s Unpacking r-cran-isoband (0.2.7-1) ...
224s Selecting previously unselected package r-cran-lattice.
224s Preparing to unpack .../186-r-cran-lattice_0.22-6-1_armhf.deb ...
224s Unpacking r-cran-lattice (0.22-6-1) ...
224s Selecting previously unselected package r-cran-nlme.
224s Preparing to unpack .../187-r-cran-nlme_3.1.164-1build1_armhf.deb ...
224s Unpacking r-cran-nlme (3.1.164-1build1) ...
224s Selecting previously unselected package r-cran-matrix.
224s Preparing to unpack .../188-r-cran-matrix_1.6-5-1_armhf.deb ...
224s Unpacking r-cran-matrix (1.6-5-1) ...
224s Selecting previously unselected package r-cran-mgcv.
224s Preparing to unpack .../189-r-cran-mgcv_1.9-1-1_armhf.deb ...
224s Unpacking r-cran-mgcv (1.9-1-1) ...
224s Selecting previously unselected package r-cran-labeling.
224s Preparing to unpack .../190-r-cran-labeling_0.4.3-1_all.deb ...
224s Unpacking r-cran-labeling (0.4.3-1) ...
224s Selecting previously unselected package r-cran-munsell.
224s Preparing to unpack .../191-r-cran-munsell_0.5.0-2build1_all.deb ...
224s Unpacking r-cran-munsell (0.5.0-2build1) ...
224s Selecting previously unselected package r-cran-rcolorbrewer.
224s Preparing to unpack .../192-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
224s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
224s Selecting previously unselected package r-cran-viridislite.
224s Preparing to unpack .../193-r-cran-viridislite_0.4.2-2_all.deb ...
224s Unpacking r-cran-viridislite (0.4.2-2) ...
224s Selecting previously unselected package r-cran-scales.
224s Preparing to unpack .../194-r-cran-scales_1.3.0-1_all.deb ...
224s Unpacking r-cran-scales (1.3.0-1) ...
224s Selecting previously unselected package r-cran-ggplot2.
224s Preparing to unpack .../195-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
224s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
224s Selecting previously unselected package r-cran-goftest.
224s Preparing to unpack .../196-r-cran-goftest_1.2-3-1_armhf.deb ...
224s Unpacking r-cran-goftest (1.2-3-1) ...
224s Selecting previously unselected package r-cran-xfun.
224s Preparing to unpack .../197-r-cran-xfun_0.44+dfsg-1_armhf.deb ...
224s Unpacking r-cran-xfun (0.44+dfsg-1) ...
224s Selecting previously unselected package r-cran-highr.
224s Preparing to unpack .../198-r-cran-highr_0.10+dfsg-2_all.deb ...
224s Unpacking r-cran-highr (0.10+dfsg-2) ...
224s Selecting previously unselected package r-cran-pkgkitten.
224s Preparing to unpack .../199-r-cran-pkgkitten_0.2.3-1_all.deb ...
224s Unpacking r-cran-pkgkitten (0.2.3-1) ...
224s Selecting previously unselected package r-cran-rcpp.
224s Preparing to unpack .../200-r-cran-rcpp_1.0.12-1_armhf.deb ...
224s Unpacking r-cran-rcpp (1.0.12-1) ...
225s Selecting previously unselected package r-cran-later.
225s Preparing to unpack .../201-r-cran-later_1.3.2+dfsg-1_armhf.deb ...
225s Unpacking r-cran-later (1.3.2+dfsg-1) ...
225s Selecting previously unselected package r-cran-promises.
225s Preparing to unpack .../202-r-cran-promises_1.3.0+dfsg-1_armhf.deb ...
225s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
225s Selecting previously unselected package r-cran-httpuv.
225s Preparing to unpack .../203-r-cran-httpuv_1.6.15+dfsg-1_armhf.deb ...
225s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
225s Selecting previously unselected package libjs-mathjax.
225s Preparing to unpack .../204-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
225s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
225s Selecting previously unselected package r-cran-knitr.
225s Preparing to unpack .../205-r-cran-knitr_1.46+dfsg-1_all.deb ...
225s Unpacking r-cran-knitr (1.46+dfsg-1) ...
226s Selecting previously unselected package r-cran-units.
226s Preparing to unpack .../206-r-cran-units_0.8-5+dfsg-1_armhf.deb ...
226s Unpacking r-cran-units (0.8-5+dfsg-1) ...
226s Selecting previously unselected package r-cran-wk.
226s Preparing to unpack .../207-r-cran-wk_0.9.1-1_armhf.deb ...
226s Unpacking r-cran-wk (0.9.1-1) ...
226s Selecting previously unselected package r-cran-s2.
226s Preparing to unpack .../208-r-cran-s2_1.1.6-1build2_armhf.deb ...
226s Unpacking r-cran-s2 (1.1.6-1build2) ...
226s Selecting previously unselected package r-cran-sf.
226s Preparing to unpack .../209-r-cran-sf_1.0-16+dfsg-1_armhf.deb ...
226s Unpacking r-cran-sf (1.0-16+dfsg-1) ...
226s Selecting previously unselected package r-cran-lwgeom.
226s Preparing to unpack .../210-r-cran-lwgeom_0.2-13-3build2_armhf.deb ...
226s Unpacking r-cran-lwgeom (0.2-13-3build2) ...
226s Selecting previously unselected package r-cran-maps.
226s Preparing to unpack .../211-r-cran-maps_3.4.2-1_armhf.deb ...
226s Unpacking r-cran-maps (3.4.2-1) ...
226s Selecting previously unselected package r-cran-nanoarrow.
226s Preparing to unpack .../212-r-cran-nanoarrow_0.4.0-1_armhf.deb ...
226s Unpacking r-cran-nanoarrow (0.4.0-1) ...
226s Selecting previously unselected package r-cran-pbapply.
226s Preparing to unpack .../213-r-cran-pbapply_1.7-2-1_all.deb ...
226s Unpacking r-cran-pbapply (1.7-2-1) ...
226s Selecting previously unselected package r-cran-pkgbuild.
226s Preparing to unpack .../214-r-cran-pkgbuild_1.4.3-1_all.deb ...
226s Unpacking r-cran-pkgbuild (1.4.3-1) ...
226s Selecting previously unselected package r-cran-rprojroot.
226s Preparing to unpack .../215-r-cran-rprojroot_2.0.4-1_all.deb ...
226s Unpacking r-cran-rprojroot (2.0.4-1) ...
226s Selecting previously unselected package r-cran-pkgload.
226s Preparing to unpack .../216-r-cran-pkgload_1.3.4-1_all.deb ...
226s Unpacking r-cran-pkgload (1.3.4-1) ...
226s Selecting previously unselected package r-cran-plogr.
226s Preparing to unpack .../217-r-cran-plogr_0.2.0-3build1_all.deb ...
226s Unpacking r-cran-plogr (0.2.0-3build1) ...
226s Selecting previously unselected package r-cran-polyclip.
226s Preparing to unpack .../218-r-cran-polyclip_1.10-6-1_armhf.deb ...
226s Unpacking r-cran-polyclip (1.10-6-1) ...
226s Selecting previously unselected package r-cran-praise.
226s Preparing to unpack .../219-r-cran-praise_1.0.0-4build1_all.deb ...
226s Unpacking r-cran-praise (1.0.0-4build1) ...
226s Selecting previously unselected package r-cran-purrr.
226s Preparing to unpack .../220-r-cran-purrr_1.0.2-1_armhf.deb ...
226s Unpacking r-cran-purrr (1.0.2-1) ...
226s Selecting previously unselected package r-cran-sp.
226s Preparing to unpack .../221-r-cran-sp_1%3a2.1-2+dfsg-1_armhf.deb ...
226s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ...
226s Selecting previously unselected package r-cran-terra.
226s Preparing to unpack .../222-r-cran-terra_1.7-65-1build2_armhf.deb ...
226s Unpacking r-cran-terra (1.7-65-1build2) ...
226s Selecting previously unselected package r-cran-raster.
226s Preparing to unpack .../223-r-cran-raster_3.6-26-1_armhf.deb ...
226s Unpacking r-cran-raster (3.6-26-1) ...
226s Selecting previously unselected package r-cran-rematch2.
227s Preparing to unpack .../224-r-cran-rematch2_2.1.2-2build1_all.deb ...
227s Unpacking r-cran-rematch2 (2.1.2-2build1) ...
227s Selecting previously unselected package r-cran-stringi.
227s Preparing to unpack .../225-r-cran-stringi_1.8.3-1_armhf.deb ...
227s Unpacking r-cran-stringi (1.8.3-1) ...
227s Selecting previously unselected package r-cran-stringr.
227s Preparing to unpack .../226-r-cran-stringr_1.5.1-1_all.deb ...
227s Unpacking r-cran-stringr (1.5.1-1) ...
227s Selecting previously unselected package r-cran-tinytex.
227s Preparing to unpack .../227-r-cran-tinytex_0.49-1_all.deb ...
227s Unpacking r-cran-tinytex (0.49-1) ...
227s Selecting previously unselected package libjs-modernizr.
227s Preparing to unpack .../228-libjs-modernizr_3.13.0-0.1_all.deb ...
227s Unpacking libjs-modernizr (3.13.0-0.1) ...
227s Selecting previously unselected package r-cran-xtable.
227s Preparing to unpack .../229-r-cran-xtable_1%3a1.8-4-2_all.deb ...
227s Unpacking r-cran-xtable (1:1.8-4-2) ...
227s Selecting previously unselected package r-cran-sourcetools.
227s Preparing to unpack .../230-r-cran-sourcetools_0.1.7-1-1_armhf.deb ...
227s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
227s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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227s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
227s Selecting previously unselected package r-cran-shiny.
227s Preparing to unpack .../232-r-cran-shiny_1.8.1.1+dfsg-1_all.deb ...
227s Unpacking r-cran-shiny (1.8.1.1+dfsg-1) ...
227s Selecting previously unselected package r-cran-rmarkdown.
227s Preparing to unpack .../233-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
227s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
227s Selecting previously unselected package r-cran-survival.
227s Preparing to unpack .../234-r-cran-survival_3.5-8-1_armhf.deb ...
227s Unpacking r-cran-survival (3.5-8-1) ...
227s Selecting previously unselected package r-cran-rpart.
227s Preparing to unpack .../235-r-cran-rpart_4.1.23-1build1_armhf.deb ...
227s Unpacking r-cran-rpart (4.1.23-1build1) ...
227s Selecting previously unselected package r-cran-rpostgresql.
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227s Unpacking r-cran-rpostgresql (0.7-6+dfsg-1) ...
227s Selecting previously unselected package r-cran-rsqlite.
227s Preparing to unpack .../237-r-cran-rsqlite_2.3.4-1_armhf.deb ...
227s Unpacking r-cran-rsqlite (2.3.4-1) ...
227s Selecting previously unselected package r-cran-spatstat.utils.
227s Preparing to unpack .../238-r-cran-spatstat.utils_3.0-4-1_armhf.deb ...
227s Unpacking r-cran-spatstat.utils (3.0-4-1) ...
227s Selecting previously unselected package r-cran-spatstat.data.
227s Preparing to unpack .../239-r-cran-spatstat.data_3.0-4-1_all.deb ...
227s Unpacking r-cran-spatstat.data (3.0-4-1) ...
227s Selecting previously unselected package r-cran-spatstat.geom.
227s Preparing to unpack .../240-r-cran-spatstat.geom_3.2-9-1_armhf.deb ...
227s Unpacking r-cran-spatstat.geom (3.2-9-1) ...
227s Selecting previously unselected package r-cran-spatstat.random.
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232s Setting up r-cran-lwgeom (0.2-13-3build2) ...
232s Setting up autopkgtest-satdep (0) ...
232s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
232s Processing triggers for man-db (2.12.1-1) ...
232s Processing triggers for install-info (7.1-3build2) ...
278s (Reading database ... 79954 files and directories currently installed.)
278s Removing autopkgtest-satdep (0) ...
286s autopkgtest [08:40:27]: test run-unit-test: [-----------------------
288s BEGIN TEST aggregate.R
288s 
288s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
288s Copyright (C) 2024 The R Foundation for Statistical Computing
288s Platform: arm-unknown-linux-gnueabihf (32-bit)
288s 
288s R is free software and comes with ABSOLUTELY NO WARRANTY.
288s You are welcome to redistribute it under certain conditions.
288s Type 'license()' or 'licence()' for distribution details.
288s 
288s R is a collaborative project with many contributors.
288s Type 'contributors()' for more information and
288s 'citation()' on how to cite R or R packages in publications.
288s 
288s Type 'demo()' for some demos, 'help()' for on-line help, or
288s 'help.start()' for an HTML browser interface to help.
288s Type 'q()' to quit R.
288s 
288s > library(sf)
288s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE
288s > # aggregate
288s > pl1 = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,0))))
288s > pl2 = st_polygon(list(rbind(c(0,0),c(1,1),c(0,1),c(0,0))))
288s > s = st_sf(a = 1:2, geom = st_sfc(pl1, pl2))
288s > (a = aggregate(s, list(c(1,1)), mean, do_union = FALSE))
288s Simple feature collection with 1 feature and 2 fields
288s Attribute-geometry relationships: aggregate (1), identity (1)
288s Geometry type: MULTIPOLYGON
288s Dimension:     XY
288s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
288s CRS:           NA
288s   Group.1   a                       geometry
288s 1       1 1.5 MULTIPOLYGON (((0 0, 1 0, 1...
288s > (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE))
288s Simple feature collection with 1 feature and 2 fields
288s Attribute-geometry relationships: aggregate (1), identity (1)
288s Geometry type: POLYGON
288s Dimension:     XY
288s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
288s CRS:           NA
288s   Group.1   a                       geometry
288s 1       1 1.5 POLYGON ((1 0, 0 0, 0 1, 1 ...
288s > # expect_warning(st_cast(a, "POINT"))
288s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
288s +  demo(meuse_sf, echo = FALSE, ask = FALSE)
288s +  a = aggregate(meuse_sf, list(meuse_sf$soil), mean)
288s +  print(attributes(a)$agr)
288s +  a = aggregate(meuse_sf, list(soil = meuse_sf$soil), mean)
288s +  print(attributes(a)$agr)
288s +  a = aggregate(meuse_sf, list(meuse_sf$soil, meuse_sf$ffreq), mean)
288s +  print(attributes(a)$agr)
288s +  a = aggregate(meuse_sf, list(soil = meuse_sf$soil, ff = meuse_sf$ffreq), mean)
288s +  print(attributes(a)$agr)
288s + }
289s   Group.1   cadmium    copper      lead      zinc      elev      dist        om 
289s  identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 
289s     ffreq      soil      lime   landuse    dist.m 
289s aggregate aggregate aggregate aggregate aggregate 
289s Levels: constant aggregate identity
289s      soil   cadmium    copper      lead      zinc      elev      dist        om 
289s  identity aggregate aggregate aggregate aggregate aggregate aggregate aggregate 
289s     ffreq    soil.1      lime   landuse    dist.m 
289s aggregate aggregate aggregate aggregate aggregate 
289s Levels: constant aggregate identity
289s   Group.1   Group.2   cadmium    copper      lead      zinc      elev      dist 
289s  identity  identity aggregate aggregate aggregate aggregate aggregate aggregate 
289s        om     ffreq      soil      lime   landuse    dist.m 
289s aggregate aggregate aggregate aggregate aggregate aggregate 
289s Levels: constant aggregate identity
289s There were 50 or more warnings (use warnings() to see the first 50)
289s      soil        ff   cadmium    copper      lead      zinc      elev      dist 
289s  identity  identity aggregate aggregate aggregate aggregate aggregate aggregate 
289s        om     ffreq    soil.1      lime   landuse    dist.m 
289s aggregate aggregate aggregate aggregate aggregate aggregate 
289s Levels: constant aggregate identity
289s > 
289s > # aggregate by sf/sfc
289s > a = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))) * 2
289s > b = a + 1
289s > p = st_sfc(st_point(c(0.1,0.1)), st_point(c(1.5,1.5)), st_point(c(2.9,2.9)))
289s > x = st_sf(count = 1:3, geom = p)
289s > aggregate(x, st_sfc(a,b), mean)
289s Simple feature collection with 2 features and 1 field
289s Geometry type: POLYGON
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 3
289s CRS:           NA
289s   count                       geometry
289s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
289s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
289s > aggregate(x, st_sf(st_sfc(a,b)), mean)
289s Simple feature collection with 2 features and 1 field
289s Geometry type: POLYGON
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 3
289s CRS:           NA
289s   count                       geometry
289s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
289s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
289s > aggregate(x, st_sf(st_sfc(a,b,b+10)), mean)
289s Simple feature collection with 3 features and 1 field
289s Geometry type: POLYGON
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 13 ymax: 13
289s CRS:           NA
289s   count                       geometry
289s 1   1.5 POLYGON ((0 0, 2 0, 2 2, 0 ...
289s 2   2.5 POLYGON ((1 1, 3 1, 3 3, 1 ...
289s 3    NA POLYGON ((11 11, 13 11, 13 ...
289s > 
289s BEGIN TEST cast.R
289s 
289s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
289s Copyright (C) 2024 The R Foundation for Statistical Computing
289s Platform: arm-unknown-linux-gnueabihf (32-bit)
289s 
289s R is free software and comes with ABSOLUTELY NO WARRANTY.
289s You are welcome to redistribute it under certain conditions.
289s Type 'license()' or 'licence()' for distribution details.
289s 
289s R is a collaborative project with many contributors.
289s Type 'contributors()' for more information and
289s 'citation()' on how to cite R or R packages in publications.
289s 
289s Type 'demo()' for some demos, 'help()' for on-line help, or
289s 'help.start()' for an HTML browser interface to help.
289s Type 'q()' to quit R.
289s 
289s > suppressPackageStartupMessages(library(sf))
289s > library(testthat)
289s > # "vertical" conversions:
289s > # column 1:
289s > mp = st_sfc(st_multipoint(matrix(0:3,,2)), st_multipoint(matrix(10:15,,2)))
289s > (ls = st_cast(mp, "LINESTRING"))
289s Geometry set for 2 features 
289s Geometry type: LINESTRING
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
289s CRS:           NA
289s LINESTRING (0 2, 1 3)
289s LINESTRING (10 13, 11 14, 12 15)
289s > st_cast(ls, "MULTIPOINT")
289s Geometry set for 2 features 
289s Geometry type: MULTIPOINT
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
289s CRS:           NA
289s MULTIPOINT ((0 2), (1 3))
289s MULTIPOINT ((10 13), (11 14), (12 15))
289s > 
289s > # column 2:
289s > mls = st_sfc(st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 
289s + 	rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 
289s + 	st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))))
289s > (pol = st_cast(mls, "POLYGON"))
289s Geometry set for 2 features 
289s Geometry type: POLYGON
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
289s CRS:           NA
289s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5...
289s POLYGON ((0 0, 1 0, 1 1, 0 1, 0 0))
289s > st_cast(pol, "MULTILINESTRING")
289s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10, 0 0),...
289s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1, 0 0))
289s POINT (0 2)
289s POINT (1 3)
289s Geometry set for 2 features 
289s Geometry type: MULTILINESTRING
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
289s CRS:           NA
289s > 
289s > # "horizontal" conversions:
289s > 
289s > (pt = st_cast(mp, "POINT"))
289s Geometry set for 5 features 
289s Geometry type: POINT
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
289s CRS:           NA
289s > (i = attr(pt, "ids"))
289s [1] 2 3
289s > (xx = st_cast(pt, "MULTIPOINT", rep(seq_along(i), i)))
289s Geometry set for 5 features 
289s Geometry type: MULTIPOINT
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 2 xmax: 12 ymax: 15
289s CRS:           NA
289s > try(yy <- st_cast(pt, "LINESTRING", rep(seq_along(i), i)))
289s > 
289s > #(zz = st_cast(yy, "MULTILINESTRING"))
289s > #(zz = st_cast(yy, "POLYGON"))
289s > 
289s > st_cast(mls, "LINESTRING")
289s Geometry set for 3 features 
289s Geometry type: LINESTRING
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
289s CRS:           NA
289s > 
289s > (g = st_sfc(c(mls, ls)))
289s Geometry set for 4 features 
289s Geometry type: GEOMETRY
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
289s CRS:           NA
289s > st_cast(g, "MULTILINESTRING")
289s Geometry set for 4 features 
289s Geometry type: MULTILINESTRING
289s Dimension:     XY
289s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
289s CRS:           NA
289s > expect_warning(st_cast(g, "LINESTRING"))
289s POINT (10 13)
289s POINT (11 14)
289s POINT (12 15)
289s MULTIPOINT ((0 2))
289s MULTIPOINT ((1 3))
289s MULTIPOINT ((10 13))
289s MULTIPOINT ((11 14))
289s MULTIPOINT ((12 15))
289s LINESTRING (0 0, 10 0, 10 10, 0 10)
289s LINESTRING (5 5, 5 6, 6 6, 6 5)
289s LINESTRING (0 0, 1 0, 1 1, 0 1)
289s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5...
289s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1))
289s LINESTRING (0 2, 1 3)
289s LINESTRING (10 13, 11 14, 12 15)
289s MULTILINESTRING ((0 0, 10 0, 10 10, 0 10), (5 5...
289s MULTILINESTRING ((0 0, 1 0, 1 1, 0 1))
289s MULTILINESTRING ((0 2, 1 3))
289s MULTILINESTRING ((10 13, 11 14, 12 15))
290s > st_cast(st_cast(g, "MULTILINESTRING"), "LINESTRING") # will not loose
290s Geometry set for 5 features 
290s Geometry type: LINESTRING
290s Dimension:     XY
290s Bounding box:  xmin: 0 ymin: 0 xmax: 12 ymax: 15
290s CRS:           NA
290s LINESTRING (0 0, 10 0, 10 10, 0 10)
290s LINESTRING (5 5, 5 6, 6 6, 6 5)
290s LINESTRING (0 0, 1 0, 1 1, 0 1)
290s LINESTRING (0 2, 1 3)
290s LINESTRING (10 13, 11 14, 12 15)
290s > 
290s > gc = st_sfc(st_geometrycollection(
290s +   list(
290s +     st_multilinestring(list(rbind(c(0,0), c(10,0), c(10,10), c(0,10)), 
290s + 	rbind(c(5,5),c(5,6), c(6,6), c(6,5)))), 
290s + 	st_multilinestring(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1)))),
290s + 	st_point(0:1)
290s +   )))
290s > try(st_cast(mls, "POINT"))
290s Geometry set for 12 features 
290s Geometry type: POINT
290s Dimension:     XY
290s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
290s CRS:           NA
290s First 5 geometries:
290s POINT (0 0)
290s POINT (10 0)
290s POINT (10 10)
290s POINT (0 10)
290s POINT (5 5)
290s > try(st_cast(mls, "MULTIPOINT"))
290s Geometry set for 3 features 
290s Geometry type: MULTIPOINT
290s Dimension:     XY
290s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
290s CRS:           NA
290s > 
290s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
290s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
290s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
290s > pol1 = list(outer, hole1, hole2)
290s > pol2 = list(outer + 12, hole1 + 12)
290s > pol3 = list(outer + 24)
290s > mp = list(pol1,pol2,pol3)
290s > mp1 = st_multipolygon(mp)
290s > s = st_sfc(mp1)
290s > x = st_cast(s, "MULTIPOINT")
290s > x = st_cast(s, "POINT")
290s > expect_warning(st_cast(mp1, "LINESTRING"))
290s MULTIPOINT ((0 0), (10 0), (10 10), (0 10))
290s MULTIPOINT ((5 5), (5 6), (6 6), (6 5))
290s MULTIPOINT ((0 0), (1 0), (1 1), (0 1))
290s > expect_warning(st_cast(mp1, "POINT"))
290s POLYGON ((0 0, 10 0, 10 10, 0 10, 0 0), (5 5, 5 6, 6 6, 6 5, 5 5))
290s > mls = mls[[1]]
290s > class(mls)
290s [1] "XY"              "MULTILINESTRING" "sfg"            
290s > #expect_error(st_cast(mls, "POLYGON"))
290s > st_cast(mls, "POLYGON")
290s > 
290s > expect_warning(st_cast(mls, "POINT"))
290s > p1 = st_polygon(pol1)
290s > expect_warning(st_cast(p1, "POINT"))
290s > ls = ls[[1]]
290s > class(ls)
290s [1] "XY"         "LINESTRING" "sfg"       
290s > expect_warning(st_cast(ls, "POINT"))
290s > 
290s > mls = st_cast(p1, "MULTILINESTRING")
290s > p2 = st_cast(mls, "POLYGON")
290s > 
290s > # st_is:
290s > st_is(st_point(0:1), "POINT")
290s [1] TRUE
290s > sfc = st_sfc(st_point(0:1), st_linestring(matrix(1:6,,2)))
290s > st_is(sfc, "POINT")
290s [1]  TRUE FALSE
290s > st_is(sfc, "POLYGON")
290s [1] FALSE FALSE
290s > st_is(sfc, "LINESTRING")
290s [1] FALSE  TRUE
290s > st_is(st_sf(a = 1:2, sfc), "LINESTRING")
290s [1] FALSE  TRUE
290s > st_is(sfc, c("POINT", "LINESTRING"))
290s [1] TRUE TRUE
290s > 
290s > #1194:
290s > wkt <- "MULTICURVE (COMPOUNDCURVE (LINESTRING (-83.62333 35.55244, -83.62328 35.55232, -83.62323 35.55223, -83.62319 35.55216, -83.62312 35.55209, -83.6231 35.55207), CIRCULARSTRING (-83.6231 35.55207, -83.62307 35.55205, -83.62302 35.55204), LINESTRING (-83.62302 35.55204, -83.62299 35.55203, -83.62289 35.55198, -83.62281 35.55189, -83.62271 35.55182)))"
290s > g <- st_as_sfc(wkt)
290s > g <- st_sf(demo = "test", geom = g, crs = 4326)
290s > m = st_cast(g, "MULTILINESTRING")
290s > identical(m$geom[[1]], st_cast(g$geom[[1]], "MULTILINESTRING"))
290s [1] TRUE
290s > 
290s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon()), 'MULTIPOLYGON') #1961
290s Geometry set for 2 features  (with 2 geometries empty)
290s Geometry type: MULTIPOLYGON
290s Dimension:     XY
290s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
290s CRS:           NA
290s > st_cast(st_sfc(st_geometrycollection(), st_multipolygon(), st_point(0:1)), 'POINT') #1961
290s MULTIPOLYGON EMPTY
290s MULTIPOLYGON EMPTY
290s Geometry set for 3 features  (with 2 geometries empty)
290s Geometry type: POINT
290s Dimension:     XY
290s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
290s CRS:           NA
290s POINT EMPTY
290s POINT EMPTY
290s > 
290s POINT (0 1)
290s BEGIN TEST crs.R
290s 
290s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
290s Copyright (C) 2024 The R Foundation for Statistical Computing
290s Platform: arm-unknown-linux-gnueabihf (32-bit)
290s 
290s R is free software and comes with ABSOLUTELY NO WARRANTY.
290s You are welcome to redistribute it under certain conditions.
290s Type 'license()' or 'licence()' for distribution details.
290s 
290s R is a collaborative project with many contributors.
290s Type 'contributors()' for more information and
290s 'citation()' on how to cite R or R packages in publications.
290s 
290s Type 'demo()' for some demos, 'help()' for on-line help, or
290s 'help.start()' for an HTML browser interface to help.
290s Type 'q()' to quit R.
290s 
290s > suppressPackageStartupMessages(library(sf))
291s > options(rgdal_show_exportToProj4_warnings = "none")
291s > suppressWarnings(st_crs(-1))
291s Coordinate Reference System: NA
291s > suppressWarnings(st_crs(999999))
291s Coordinate Reference System: NA
291s > inherits(try(st_crs("error"), silent = TRUE), "try-error")
291s [1] TRUE
291s > str = "+proj=sterea +lat_0=52.15616055555555 +lon_0=5.38763888888889 +k=0.9999079 +x_0=155000 +y_0=463000 +ellps=bessel +towgs84=565.4171,50.3319,465.5524,-0.398957388243134,0.343987817378283,-1.87740163998045,4.0725 +units=m +no_defs"
291s > x <- st_crs(str)
291s > x<- st_crs(3857)
291s > str = st_crs(3857)$proj4string
291s > st_crs(3857)$units
291s [1] "m"
291s > x = st_crs("+proj=longlat +datum=WGS84")
291s > x = st_crs(4326)
291s > x = st_crs("+proj=laea") # no EPSG
291s > 
291s > x = st_sfc(st_point(0:1))
291s > y = st_crs(x, parameters = TRUE)
291s > st_crs(x) = 4326
291s > y = st_crs(x, parameters = TRUE)
291s > 
291s > from = st_crs(4326)$proj4string
291s > to = st_crs(3857)$proj4string
291s > ret = sf_project(from, to, rbind(c(0,0), c(1,1)))
291s > round(ret, 7)
291s          [,1]     [,2]
291s [1,]      0.0      0.0
291s [2,] 111319.5 111325.1
291s > # create Inf points: #1227/#1228
291s > suppressWarnings(
291s +   sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE)
291s + )
291s      [,1]      [,2]
291s [1,]    0 -53554590
291s [2,]   NA        NA
291s > sf_project(to, from, ret)
291s      [,1] [,2]
291s [1,]    0    0
291s [2,]    1    1
291s > suppressWarnings(
291s +   sf_project("+proj=longlat", "+proj=lcc +lat_1=30 +lat_2=60", cbind(c(0,0),c(-80,-90)), keep = TRUE)
291s + )
291s      [,1]      [,2]
291s [1,]    0 -53554590
291s [2,]   NA        NA
291s > st_transform(st_sfc(st_point(c(0,0)), st_point(c(1,1)), crs = 4326), 3857)
291s Geometry set for 2 features 
291s Geometry type: POINT
291s Dimension:     XY
291s Bounding box:  xmin: 0 ymin: 0 xmax: 111319.5 ymax: 111325.1
291s Projected CRS: WGS 84 / Pseudo-Mercator
291s > if (Sys.getenv("USER") %in% c("edzer", "travis")) { # causes memory leaks:
291s +   stopifnot(inherits(try(sf_project("+proj=longlat", "+proj=bar", matrix(1:4,2)), silent = TRUE), "try-error"))
291s +   stopifnot(inherits(try(sf_project("+proj=foo", "+proj=longlat", matrix(1:4,2)), silent = TRUE), "try-error"))
291s + }
291s > 
291s > if (sf_extSoftVersion()["USE_PROJ_H"] == "true" || sf_proj_info("have_datum_files")) {
291s +   "datum files installed"
291s + } else {
291s +   "datum files not installed"
291s + }
291s [1] "datum files installed"
291s > 
291s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
291s +  x0 = sp::CRS("+init=epsg:4326")
291s +  cat(sp::wkt(x0), "\n")
291s +  x = st_crs(x0)
291s +  print(x)
291s + 
291s +  y0 = st_crs(4326)
291s +  y0
291s +  y = as(y0, "CRS")
291s +  cat(sp::wkt(y), "\n")
291s + }
291s POINT (0 0)
291s POINT (111319.5 111325.1)
291s GEOGCRS["WGS 84",
291s     ENSEMBLE["World Geodetic System 1984 ensemble",
291s         MEMBER["World Geodetic System 1984 (Transit)",
291s             ID["EPSG",1166]],
291s         MEMBER["World Geodetic System 1984 (G730)",
291s             ID["EPSG",1152]],
291s         MEMBER["World Geodetic System 1984 (G873)",
291s             ID["EPSG",1153]],
291s         MEMBER["World Geodetic System 1984 (G1150)",
291s             ID["EPSG",1154]],
291s         MEMBER["World Geodetic System 1984 (G1674)",
291s             ID["EPSG",1155]],
291s         MEMBER["World Geodetic System 1984 (G1762)",
291s             ID["EPSG",1156]],
291s         MEMBER["World Geodetic System 1984 (G2139)",
291s             ID["EPSG",1309]],
291s         ELLIPSOID["WGS 84",6378137,298.257223563,
291s             LENGTHUNIT["metre",1],
291s             ID["EPSG",7030]],
291s         ENSEMBLEACCURACY[2.0],
291s         ID["EPSG",6326]],
291s     PRIMEM["Greenwich",0,
291s         ANGLEUNIT["degree",0.0174532925199433],
291s         ID["EPSG",8901]],
291s     CS[ellipsoidal,2],
291s         AXIS["longitude",east,
291s             ORDER[1],
291s             ANGLEUNIT["degree",0.0174532925199433,
291s                 ID["EPSG",9122]]],
291s         AXIS["latitude",north,
291s             ORDER[2],
291s             ANGLEUNIT["degree",0.0174532925199433,
291s                 ID["EPSG",9122]]],
291s     USAGE[
291s         SCOPE["unknown"],
291s         AREA["World."],
291s         BBOX[-90,-180,90,180]]] 
291s Coordinate Reference System:
291s   User input: WGS 84 
291s   wkt:
291s GEOGCRS["WGS 84",
291s     ENSEMBLE["World Geodetic System 1984 ensemble",
291s         MEMBER["World Geodetic System 1984 (Transit)",
291s             ID["EPSG",1166]],
291s         MEMBER["World Geodetic System 1984 (G730)",
291s             ID["EPSG",1152]],
291s         MEMBER["World Geodetic System 1984 (G873)",
291s             ID["EPSG",1153]],
291s         MEMBER["World Geodetic System 1984 (G1150)",
291s             ID["EPSG",1154]],
291s         MEMBER["World Geodetic System 1984 (G1674)",
291s             ID["EPSG",1155]],
291s         MEMBER["World Geodetic System 1984 (G1762)",
291s             ID["EPSG",1156]],
291s         MEMBER["World Geodetic System 1984 (G2139)",
291s             ID["EPSG",1309]],
291s         ELLIPSOID["WGS 84",6378137,298.257223563,
291s             LENGTHUNIT["metre",1],
291s             ID["EPSG",7030]],
291s         ENSEMBLEACCURACY[2.0],
291s         ID["EPSG",6326]],
291s     PRIMEM["Greenwich",0,
291s         ANGLEUNIT["degree",0.0174532925199433],
291s         ID["EPSG",8901]],
291s     CS[ellipsoidal,2],
291s         AXIS["longitude",east,
291s             ORDER[1],
291s             ANGLEUNIT["degree",0.0174532925199433,
291s                 ID["EPSG",9122]]],
291s         AXIS["latitude",north,
291s             ORDER[2],
291s             ANGLEUNIT["degree",0.0174532925199433,
291s                 ID["EPSG",9122]]],
291s     USAGE[
291s         SCOPE["unknown"],
291s         AREA["World."],
291s         BBOX[-90,-180,90,180]]]
291s GEOGCRS["WGS 84",
291s     ENSEMBLE["World Geodetic System 1984 ensemble",
291s         MEMBER["World Geodetic System 1984 (Transit)"],
291s         MEMBER["World Geodetic System 1984 (G730)"],
291s         MEMBER["World Geodetic System 1984 (G873)"],
291s         MEMBER["World Geodetic System 1984 (G1150)"],
291s         MEMBER["World Geodetic System 1984 (G1674)"],
291s         MEMBER["World Geodetic System 1984 (G1762)"],
291s         MEMBER["World Geodetic System 1984 (G2139)"],
291s         ELLIPSOID["WGS 84",6378137,298.257223563,
291s             LENGTHUNIT["metre",1]],
291s         ENSEMBLEACCURACY[2.0]],
291s     PRIMEM["Greenwich",0,
291s         ANGLEUNIT["degree",0.0174532925199433]],
291s     CS[ellipsoidal,2],
291s         AXIS["geodetic latitude (Lat)",north,
291s             ORDER[1],
291s             ANGLEUNIT["degree",0.0174532925199433]],
291s         AXIS["geodetic longitude (Lon)",east,
291s             ORDER[2],
291s             ANGLEUNIT["degree",0.0174532925199433]],
291s     USAGE[
291s         SCOPE["Horizontal component of 3D system."],
291s         AREA["World."],
291s         BBOX[-90,-180,90,180]],
291s     ID["EPSG",4326]] 
291s > 
291s > # https://github.com/r-spatial/sf/issues/1170
291s > g = st_as_sfc("POLYGON ((-61.66957 10.69214, -61.565 10.75728, -61.37453 10.77654, -61.40721 10.60681, -61.66957 10.69214))")
291s > d = st_as_sf(data.frame(id=1, geometry=g), crs=4326)
291s Warning message:
291s In CPL_crs_from_input(x) :
291s   GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order.
291s > st_area(d)
291s 350534486 [m^2]
291s > st_area(st_transform(d, 2314))
291s 349124497 [m^2]
291s > 
291s > st_axis_order()
291s [1] FALSE
291s > if (compareVersion(sf_extSoftVersion()["GDAL"], "2.5.0") > -1)
291s +   st_axis_order(TRUE)
291s > st_axis_order(FALSE)
291s > 
291s BEGIN TEST dist.R
291s 
291s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
291s Copyright (C) 2024 The R Foundation for Statistical Computing
291s Platform: arm-unknown-linux-gnueabihf (32-bit)
291s 
291s R is free software and comes with ABSOLUTELY NO WARRANTY.
291s You are welcome to redistribute it under certain conditions.
291s Type 'license()' or 'licence()' for distribution details.
291s 
291s R is a collaborative project with many contributors.
291s Type 'contributors()' for more information and
291s 'citation()' on how to cite R or R packages in publications.
291s 
291s Type 'demo()' for some demos, 'help()' for on-line help, or
291s 'help.start()' for an HTML browser interface to help.
291s Type 'q()' to quit R.
291s 
291s > suppressPackageStartupMessages(library(sf))
292s > suppressPackageStartupMessages(library(units))
292s > 
292s > x = st_sfc(
292s + st_point(c(0,0)),
292s + st_point(c(1,0)),
292s + st_point(c(2,0)),
292s + st_point(c(3,0)),
292s + crs = 4326
292s + )
292s > 
292s > y = st_sfc(
292s + st_point(c(0,10)),
292s + st_point(c(1,0)),
292s + st_point(c(2,0)),
292s + st_point(c(3,0)),
292s + st_point(c(4,0)),
292s + crs = 4326
292s + )
292s > 
292s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
292s +  d.sf = st_distance(x, y)
292s +  d.sp = spDists(as(x, "Spatial"), as(y, "Spatial"))
292s +  units(d.sp) = as_units("km")
292s +  print(round(d.sf - d.sp, 7))
292s + 
292s + #summary(unclass(d.sf) - d.sp)
292s + 
292s +  st_crs(x) = st_crs(y) = NA
292s +  d.sf = st_distance(x, y)
292s +  d.sp = spDists(as(x, "Spatial"), as(y, "Spatial"))
292s +  print(round(d.sf - d.sp, 7))
292s + }
292s Units: [m]
292s          [,1]      [,2]      [,3]      [,4]      [,5]
292s [1,] 6107.765 -124.3896 -248.7792 -373.1688 -497.5585
292s [2,] 6065.138    0.0000 -124.3896 -248.7792 -373.1688
292s [3,] 5940.569 -124.3896    0.0000 -124.3896 -248.7792
292s [4,] 5743.252 -248.7792 -124.3896    0.0000 -124.3896
292s      [,1] [,2] [,3] [,4] [,5]
292s [1,]    0    0    0    0    0
292s [2,]    0    0    0    0    0
292s [3,]    0    0    0    0    0
292s [4,]    0    0    0    0    0
292s > 
292s > # st_length:
292s > st_crs(y) = 4326
292s > (z = st_sfc(st_linestring(rbind(c(0,10), c(1,0), c(2,0), c(3,0), c(4,0))), crs = 4326))
292s Geometry set for 1 feature 
292s Geometry type: LINESTRING
292s Dimension:     XY
292s Bounding box:  xmin: 0 ymin: 0 xmax: 4 ymax: 10
292s Geodetic CRS:  WGS 84
292s > d = st_distance(y, y)
292s LINESTRING (0 10, 1 0, 2 0, 3 0, 4 0)
292s > round(d, 7)
292s Units: [m]
292s         [,1]      [,2]      [,3]      [,4]      [,5]
292s [1,]       0 1117440.6 1133750.1 1160423.1 1196767.0
292s [2,] 1117441       0.0  111195.1  222390.2  333585.3
292s [3,] 1133750  111195.1       0.0  111195.1  222390.2
292s [4,] 1160423  222390.2  111195.1       0.0  111195.1
292s [5,] 1196767  333585.3  222390.2  111195.1       0.0
292s > st_length(z)
292s 1451026 [m]
292s > round(st_length(z) - sum(d[1,2], d[2,3], d[3,4], d[4,5]), 7)
292s MULTIPOINT ((0 0.5))
292s 0 [m]
292s > 
292s > # st_line_sample:
292s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
292s + 	st_linestring(rbind(c(0,0),c(10,0))))
292s > # set.seed(135)
292s > st_line_sample(ls, density = 1)
292s Geometry set for 2 features 
292s Geometry type: MULTIPOINT
292s Dimension:     XY
292s Bounding box:  xmin: 0 ymin: 0 xmax: 9.5 ymax: 0.5
292s MULTIPOINT ((0.5 0), (1.5 0), (2.5 0), (3.5 0),...
292s Error in st_line_sample(ls, density = 1/1000) : 
292s   st_line_sample for longitude/latitude not supported; use st_segmentize?
292s CRS:           NA
292s > 
292s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
292s + 	st_linestring(rbind(c(0,0),c(.1,0))), crs = 4326)
292s > 
292s > st_length(ls)
292s Units: [m]
292s [1] 111195.10  11119.51
292s > try(st_line_sample(ls, density = 1/1000))
292s > x = st_line_sample(st_transform(ls, 3857), density = 1/1000) # one per km
292s > 
292s BEGIN TEST dplyr.R
292s 
292s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
292s Copyright (C) 2024 The R Foundation for Statistical Computing
292s Platform: arm-unknown-linux-gnueabihf (32-bit)
292s 
292s R is free software and comes with ABSOLUTELY NO WARRANTY.
292s You are welcome to redistribute it under certain conditions.
292s Type 'license()' or 'licence()' for distribution details.
292s 
292s R is a collaborative project with many contributors.
292s Type 'contributors()' for more information and
292s 'citation()' on how to cite R or R packages in publications.
292s 
292s Type 'demo()' for some demos, 'help()' for on-line help, or
292s 'help.start()' for an HTML browser interface to help.
292s Type 'q()' to quit R.
292s 
292s > suppressPackageStartupMessages(library(sf))
292s > 
292s > if (require(dplyr, quietly = TRUE)) {
292s +  options(dplyr.summarise.inform=FALSE)
292s +  read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>%
292s + 	st_transform(3857) -> nc
292s +  nc %>% filter(AREA > .1) %>% plot()
292s + 
292s + # plot 10 smallest counties in grey:
292s +  nc %>% 
292s +    select(BIR74, geometry) %>% 
292s +    plot()
292s + 
292s +  nc %>% 
292s +   select(AREA, geometry) %>% 
292s +   arrange(AREA) %>% 
292s +   slice(1:10) %>% 
292s +   plot(add = TRUE, col = 'grey', main ="")
292s + 
292s + # select: check both when geometry is part of the selection, and when not:
292s +  nc %>% select(SID74, SID79) %>% names()
292s +  nc %>% select(SID74, SID79, geometry) %>% names()
292s +  nc %>% select(SID74, SID79) %>% class()
292s +  nc %>% select(SID74, SID79, geometry) %>% class()
292s + 
292s + # group_by:
292s +  nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
292s +  nc %>% group_by(area_cl) %>% class()
292s + 
292s + # mutate:
292s +  nc2 <- nc %>% mutate(area10 = AREA/10)
292s + 
292s + # transmute:
292s +  nc %>% transmute(AREA = AREA/10, geometry = geometry) %>% class()
292s +  nc %>% transmute(AREA = AREA/10) %>% class()
292s + 
292s + # rename:
292s +  nc2 <- nc %>% rename(area = AREA)
292s + 
292s + # distinct:
292s +  nc[c(1:100,1:10),] %>% distinct() %>% nrow()
292s + 
292s + # summarize:
292s +  nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
292s +  nc.g <- nc %>% group_by(area_cl)
292s +  nc.g %>% summarise(mean(AREA))
292s +  nc.g %>% summarize(mean(AREA)) %>% plot(col = 3:6/7)
292s + 
292s +  library(tidyr)
292s + 
292s + # time-wide to long table, using tidyr::gather
292s + # stack the two SID columns for the July 1, 1974 - June 30, 1978 and July 1, 1979 - June 30, 1984 periods
292s + # (see https://cran.r-project.org/web/packages/spdep/vignettes/sids.pdf)
292s +  nc %>% select(SID74, SID79, geometry) %>% gather("VAR", "SID", -geometry) %>% summary()
292s + 
292s + # spread:
292s +  nc$row = 1:100
292s +  nc.g <- nc %>% select(SID74, SID79, row) %>% gather("VAR", "SID", -row, -geometry)
292s +  nc.g %>% tail()
292s +  nc.g %>% spread(VAR, SID) %>% head()
292s +  nc %>% select(SID74, SID79, geometry, row) %>% gather("VAR", "SID", -geometry, -row) %>% spread(VAR, SID) %>% head()
292s + 
292s + # test st_set_crs in pipe:
292s +  sfc = st_sfc(st_point(c(0,0)), st_point(c(1,1)))
292s +  x <- sfc %>% st_set_crs(4326) %>% st_transform(3857)
292s +  x
292s + 
292s + read_sf(system.file("shape/nc.shp", package="sf"), quiet = TRUE) %>%
292s + 	st_transform(3857) -> nc
292s +  nc.merc <- st_transform(nc, 32119) # NC State Plane
292s +  suppressPackageStartupMessages(library(units))
292s +  install_unit("person")
292s +  person = as_units("person")
292s +  nc.merc <- nc.merc %>% mutate(area = st_area(nc.merc), dens = BIR74 * person / area)
292s + 
292s + # summary(nc.merc$dens) # requires units 0.4-2
292s +  nc.merc$area_cl <- cut(nc$AREA, c(0, .1, .12, .15, .25))
292s +  nc.grp <- nc.merc %>% group_by(area_cl)
292s + 
292s +  out <- nc.grp %>% summarise(A = sum(area), pop = sum(dens * area), 
292s + 	new_dens = sum(dens * area)/sum(area)) 
292s + 
292s + # mean densities depend on grouping:
292s +  nc.merc %>% summarize(mean(dens))
292s +  out %>% summarise(mean(new_dens))
292s + 
292s + # total densities don't:
292s +  nc.merc %>% summarise(sum(area * dens))
292s +  out %>% summarise(sum(A * new_dens))
292s + 
292s +  conn = system.file("gpkg/nc.gpkg", package = "sf")
292s + 
292s + if (require(DBI, quietly = TRUE) && require(RSQLite, quietly = TRUE)) {
292s +  con = dbConnect(SQLite(), dbname = system.file("gpkg/nc.gpkg", package = "sf"))
292s +  dbReadTable(con, "nc.gpkg") %>% filter(AREA > 0.2) %>% collect %>% st_sf
292s + 
292s + # nest:
292s +  storms.sf = st_as_sf(storms, coords = c("long", "lat"), crs = 4326)
292s +  x <- storms.sf %>% group_by(name, year) %>% nest
292s + 
292s +  nrow(distinct(nc[c(1,1,1,2,2,3:100),]))
292s + 
292s + # set.seed(1331)
292s +  nc$gp <- sample(10, 100, replace=TRUE)
292s + # Get centroid of each group of polygons; https://github.com/r-spatial/sf/issues/969
292s +  nc_gp_cent <- nc %>%
292s +                 group_by(gp) %>%
292s +                 group_map(st_area)
292s + 
292s +  nc %>% st_filter(nc[1,]) %>% nrow
292s + } # DBI & SQLITE
292s + } # dplyr
293s 
293s Attaching package: 'dplyr'
293s 
293s The following objects are masked from 'package:stats':
293s 
293s     filter, lag
293s 
293s The following objects are masked from 'package:base':
293s 
293s     intersect, setdiff, setequal, union
293s 
294s [1] 4
294s > 
294s Warning message:
294s plotting the first 10 out of 14 attributes; use max.plot = 14 to plot all 
295s BEGIN TEST empty.R
295s 
295s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
295s Copyright (C) 2024 The R Foundation for Statistical Computing
295s Platform: arm-unknown-linux-gnueabihf (32-bit)
295s 
295s R is free software and comes with ABSOLUTELY NO WARRANTY.
295s You are welcome to redistribute it under certain conditions.
295s Type 'license()' or 'licence()' for distribution details.
295s 
295s R is a collaborative project with many contributors.
295s Type 'contributors()' for more information and
295s 'citation()' on how to cite R or R packages in publications.
295s 
295s Type 'demo()' for some demos, 'help()' for on-line help, or
295s 'help.start()' for an HTML browser interface to help.
295s Type 'q()' to quit R.
295s 
295s > suppressPackageStartupMessages(library(sf))
295s > 
295s > # create empty geometries:
295s > st_point(rep(NA_real_,2))
295s > st_point(rep(NA_real_,3), dim = "XYZ")
295s POINT EMPTY
295s POINT Z EMPTY
295s POINT M EMPTY
295s POINT ZM EMPTY
295s > st_point(rep(NA_real_,3), dim = "XYM")
295s > st_point(rep(NA_real_,4), dim = "XYZM")
295s > 
295s > st_multipoint()
295s MULTIPOINT EMPTY
295s MULTIPOINT Z EMPTY
295s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYZ")
295s > st_multipoint(matrix(numeric(0), 0, 3), dim = "XYM")
295s MULTIPOINT M EMPTY
295s > st_multipoint(matrix(numeric(0), 0, 4), dim = "XYZM")
295s MULTIPOINT ZM EMPTY
295s > 
295s > st_linestring(matrix(numeric(0), 0, 2), "XY")
295s > st_linestring(matrix(numeric(0), 0, 3), "XYZ")
295s LINESTRING EMPTY
295s LINESTRING Z EMPTY
295s > st_linestring(matrix(numeric(0), 0, 3), "XYM")
295s > st_linestring(matrix(numeric(0), 0, 4), "XYZM")
295s > 
295s > st_multilinestring(list(), "XY")
295s > st_multilinestring(list(), "XYZ")
295s > st_multilinestring(list(), "XYM")
295s > st_multilinestring(list(), "XYZM")
295s > 
295s > st_polygon(list(), "XY")
295s > st_polygon(list(), "XYZ")
295s > st_polygon(list(), "XYM")
295s > st_polygon(list(), "XYZM")
295s > 
295s > st_multipolygon(list(), "XY")
295s > st_multipolygon(list(), "XYZ")
295s > st_multipolygon(list(), "XYM")
295s > st_multipolygon(list(), "XYZM")
295s > 
295s > st_geometrycollection()
295s > st_geometrycollection(dim = "XYZ")
295s > st_geometrycollection(dim = "XYM")
295s > st_geometrycollection(dim = "XYZM")
295s > 
295s > st_point(rep(NA_real_,2))
295s > st_multipoint()
295s > st_linestring(matrix(numeric(0), 0, 2))
295s > st_multilinestring(list(), "XY")
295s > st_polygon(list(), "XY")
295s > st_multipolygon(list(), "XY")
295s > st_geometrycollection(, "XY")
295s > 
295s > (e1 = st_sfc(
295s + st_point(rep(NA_real_,2)),
295s + st_multipoint(),
295s + st_linestring(matrix(numeric(0), 0, 2)),
295s + st_multilinestring(list(), "XY"),
295s + st_polygon(list(), "XY"),
295s + st_multipolygon(list(), "XY"),
295s + st_geometrycollection(, "XY")))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XY
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s CRS:           NA
295s First 5 geometries:
295s > 
295s > (e2 = st_sfc(st_point(rep(NA_real_,3), "XYZ"),
295s + st_multipoint(matrix(numeric(0),0,3), dim = "XYZ"),
295s + st_linestring(matrix(numeric(0), 0, 3)),
295s + st_multilinestring(list(), "XYZ"),
295s + st_polygon(list(), "XYZ"),
295s + st_multipolygon(list(), "XYZ"),
295s + st_geometrycollection(dim = "XYZ")))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XYZ
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s z_range:       zmin: NA zmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > 
295s > (e3 = st_sfc(st_point(rep(NA_real_,3), "XYM"),
295s + st_multipoint(matrix(numeric(0),0,3), dim = "XYM"),
295s + st_linestring(matrix(numeric(0), 0, 3), "XYM"),
295s + st_multilinestring(list(), "XYM"),
295s + st_polygon(list(), "XYM"),
295s + st_multipolygon(list(), "XYM"),
295s + st_geometrycollection(dim = "XYM")))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XYM
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s m_range:       mmin: NA mmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > 
295s > (e4 = st_sfc(st_point(rep(NA_real_,4)),
295s + st_multipoint(matrix(numeric(0),0,4), dim = "XYZM"),
295s + st_linestring(matrix(numeric(0), 0, 4)),
295s + st_multilinestring(list(), "XYZM"),
295s + st_polygon(list(), "XYZM"),
295s + st_multipolygon(list(), "XYZM"),
295s + st_geometrycollection(dim = "XYZM")))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XYZM
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s z_range:       zmin: NA zmax: NA
295s m_range:       mmin: NA mmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > 
295s > st_as_sfc(st_as_binary(e1, pureR = TRUE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XY
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s CRS:           NA
295s First 5 geometries:
295s > st_as_sfc(st_as_binary(e1, pureR = FALSE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XY
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s CRS:           NA
295s First 5 geometries:
295s > st_as_sfc(st_as_binary(e2, pureR = FALSE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XYZ
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s z_range:       zmin: NA zmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > st_as_sfc(st_as_binary(e3, pureR = FALSE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s LINESTRING M EMPTY
295s LINESTRING ZM EMPTY
295s MULTILINESTRING EMPTY
295s MULTILINESTRING Z EMPTY
295s MULTILINESTRING M EMPTY
295s MULTILINESTRING ZM EMPTY
295s POLYGON EMPTY
295s POLYGON Z EMPTY
295s POLYGON M EMPTY
295s POLYGON ZM EMPTY
295s MULTIPOLYGON EMPTY
295s MULTIPOLYGON Z EMPTY
295s MULTIPOLYGON M EMPTY
295s MULTIPOLYGON ZM EMPTY
295s GEOMETRYCOLLECTION EMPTY
295s GEOMETRYCOLLECTION Z EMPTY
295s GEOMETRYCOLLECTION M EMPTY
295s GEOMETRYCOLLECTION ZM EMPTY
295s POINT EMPTY
295s MULTIPOINT EMPTY
295s LINESTRING EMPTY
295s MULTILINESTRING EMPTY
295s POLYGON EMPTY
295s MULTIPOLYGON EMPTY
295s GEOMETRYCOLLECTION EMPTY
295s POINT EMPTY
295s MULTIPOINT EMPTY
295s LINESTRING EMPTY
295s MULTILINESTRING EMPTY
295s POLYGON EMPTY
295s POINT Z EMPTY
295s MULTIPOINT Z EMPTY
295s LINESTRING Z EMPTY
295s MULTILINESTRING Z EMPTY
295s POLYGON Z EMPTY
295s POINT M EMPTY
295s MULTIPOINT M EMPTY
295s LINESTRING M EMPTY
295s MULTILINESTRING M EMPTY
295s POLYGON M EMPTY
295s POINT ZM EMPTY
295s MULTIPOINT ZM EMPTY
295s LINESTRING ZM EMPTY
295s MULTILINESTRING ZM EMPTY
295s POLYGON ZM EMPTY
295s POINT EMPTY
295s MULTIPOINT EMPTY
295s LINESTRING EMPTY
295s MULTILINESTRING EMPTY
295s POLYGON EMPTY
295s POINT EMPTY
295s MULTIPOINT EMPTY
295s LINESTRING EMPTY
295s MULTILINESTRING EMPTY
295s POLYGON EMPTY
295s POINT Z EMPTY
295s MULTIPOINT Z EMPTY
295s LINESTRING Z EMPTY
295s MULTILINESTRING Z EMPTY
295s POLYGON Z EMPTY
295s POINT M EMPTY
295s MULTIPOINT M EMPTY
295s LINESTRING M EMPTY
295s MULTILINESTRING M EMPTY
295s POLYGON M EMPTY
295s POINT ZM EMPTY
295s MULTIPOINT ZM EMPTY
295s LINESTRING ZM EMPTY
295s MULTILINESTRING ZM EMPTY
295s POLYGON ZM EMPTY
295s POINT EMPTY
295s MULTIPOINT EMPTY
295s LINESTRING EMPTY
295s MULTILINESTRING EMPTY
295s POLYGON EMPTY
295s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
295s Dimension:     XYM
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s m_range:       mmin: NA mmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > st_as_sfc(st_as_binary(e4, pureR = FALSE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XYZM
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s z_range:       zmin: NA zmax: NA
295s m_range:       mmin: NA mmax: NA
295s CRS:           NA
295s First 5 geometries:
295s > st_as_sfc(st_as_binary(e1, pureR = FALSE))
295s Geometry set for 7 features  (with 7 geometries empty)
295s Geometry type: GEOMETRY
295s Dimension:     XY
295s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
295s CRS:           NA
295s First 5 geometries:
295s > 
295s > # sfc_GEOMETRY:
295s > x = st_sfc(st_point(0:1), st_linestring(matrix(1:4,2,2)))
295s > st_intersects(x, x, sparse = FALSE)
295s       [,1]  [,2]
295s [1,]  TRUE FALSE
295s [2,] FALSE  TRUE
295s > 
295s > # two empty geoms:
295s > x = st_sfc(st_multipoint(), st_linestring())
295s > st_intersects(x, x, sparse = FALSE)
295s       [,1]  [,2]
295s [1,] FALSE FALSE
295s [2,] FALSE FALSE
295s > 
295s > # write & read:
295s > x = st_sf(a = 2:1, geom = structure(st_sfc(st_linestring(), st_linestring(matrix(1:4,2)))))
295s > write_sf(x, "empty.gpkg")
295s > y = st_read("empty.gpkg", quiet = TRUE)
295s > all.equal(x, y)
295s [1] "Component \"geom\": Attributes: < Component \"crs\": Component \"input\": 'is.NA' value mismatch: 0 in current 1 in target >"
295s [2] "Component \"geom\": Attributes: < Component \"crs\": Component \"wkt\": 'is.NA' value mismatch: 0 in current 1 in target >"  
295s > 
295s > # https://github.com/edzer/sfr/issues/398 :
295s > pt = st_sfc(st_point(c(0,92)), crs = 4267)
295s > robin_crs <- "+proj=robin +lon_0=0 +x_0=0 +y_0=0 +ellps=WGS84 +datum=WGS84 +units=m +no_defs"
295s > # india_crs <- "+init=epsg:24383"  # India-centered Lambert conformal conic projection
295s > india_crs <- "+proj=lcc +lat_1=12 +lat_0=12 +lon_0=80 +k_0=0.99878641 +x_0=2743195.5 +y_0=914398.5 +a=6377299.151 +b=6356098.145120132 +towgs84=295,736,257,0,0,0,0 +units=m +no_defs"
295s > st_transform(st_transform(pt, robin_crs), india_crs)[[1]]
295s > 
295s POINT EMPTY
295s BEGIN TEST gdal_geom.R
295s 
295s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
295s Copyright (C) 2024 The R Foundation for Statistical Computing
295s Platform: arm-unknown-linux-gnueabihf (32-bit)
295s 
295s R is free software and comes with ABSOLUTELY NO WARRANTY.
295s You are welcome to redistribute it under certain conditions.
295s Type 'license()' or 'licence()' for distribution details.
295s 
295s R is a collaborative project with many contributors.
295s Type 'contributors()' for more information and
295s 'citation()' on how to cite R or R packages in publications.
295s 
295s Type 'demo()' for some demos, 'help()' for on-line help, or
295s 'help.start()' for an HTML browser interface to help.
295s Type 'q()' to quit R.
295s 
295s > suppressPackageStartupMessages(library(sf))
296s > 
296s > nc = st_read(system.file("shape/nc.shp", package="sf"), "nc", crs = 4267,
296s + 	agr = c(AREA = "aggregate", PERIMETER = "aggregate", CNTY_ = "identity",
296s + 		CNTY_ID = "identity", NAME = "identity", FIPS = "identity", FIPSNO = "identity",
296s + 		CRESS_ID = "identity", BIR74 = "aggregate", SID74 = "aggregate", NWBIR74 = "aggregate",
296s + 		BIR79 = "aggregate", SID79 = "aggregate", NWBIR79  = "aggregate"), quiet = TRUE)
296s > 
296s > st_is_valid(nc)
296s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s > 
296s > st_is_simple(nc)
296s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
296s > 
296s > nc_tr = st_transform(nc, 3857)
296s > 
296s > x = st_buffer(nc_tr, 1000)
296s > 
296s > x = st_boundary(nc)
296s > 
296s > x = st_convex_hull(nc)
296s > 
296s > x = st_simplify(nc_tr, dTolerance = 1e4)
296s > 
296s > x = st_simplify(nc_tr, preserveTopology = TRUE)
296s > 
296s > if (sf:::CPL_geos_version() >= "3.4.0")
296s + 	x = st_triangulate(nc_tr)
296s > 
296s > mls = st_multilinestring(list(matrix(c(0,0,0,1,1,1,0,0),,2,byrow=TRUE)))
296s > x = st_polygonize(mls)
296s > 
296s > x = st_segmentize(nc_tr, 5e4)
296s > 
296s > try(x <- st_segmentize(nc_tr, -0.1))
296s Error : argument dfMaxLength should be positive
296s 
296s > 
296s > x = st_centroid(nc_tr)
296s Warning message:
296s st_centroid assumes attributes are constant over geometries 
296s > x = st_point_on_surface(nc_tr)
296s Warning message:
296s st_point_on_surface assumes attributes are constant over geometries 
296s > 
296s > a = nc[1:5,]
296s > b = nc[4:10,]
296s > 
296s > x <- st_intersection(a[1,] ,b)
296s > 
296s > u = st_union(b) 
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x <- st_intersection(st_geometry(a), st_geometry(u))
296s > 
296s > x = st_union(a[1,], b)
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x = st_union(a, st_union(b))
296s > 
296s > x = st_difference(a[1,], b)
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x = st_difference(a, st_union(b))
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x = st_sym_difference(a[1,], b)
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x = st_sym_difference(a, st_union(b))
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > 
296s > x = st_drivers()
296s Warning message:
296s attribute variables are assumed to be spatially constant throughout all geometries 
296s > #cat(paste("GDAL has", nrow(x), "drivers\n"))
296s > 
296s > # GEOS ops:
296s > 
296s > st_relate(a, b)
296s although coordinates are longitude/latitude, st_relate assumes that they are
296s planar
296s      [,1]        [,2]        [,3]        [,4]        [,5]        [,6]       
296s [1,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
296s [2,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
296s [3,] "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212" "FF2FF1212"
296s [4,] "2FFF1FFF2" "FF2FF1212" "FF2FF1212" "FF2F11212" "FF2FF1212" "FF2FF1212"
296s [5,] "FF2FF1212" "2FFF1FFF2" "FF2F11212" "FF2FF1212" "FF2FF1212" "FF2F11212"
296s      [,7]       
296s [1,] "FF2FF1212"
296s [2,] "FF2FF1212"
296s [3,] "FF2F11212"
296s [4,] "FF2FF1212"
296s [5,] "FF2FF1212"
296s > 
296s > st_disjoint(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `disjoint'
296s  1: 1, 2, 3, 4, 5, 6, 7
296s  2: 1, 2, 3, 4, 5, 6, 7
296s  3: 1, 2, 3, 4, 5, 6
296s  4: 2, 3, 5, 6, 7
296s  5: 1, 4, 5, 7
296s > 
296s > st_touches(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `touches'
296s  1: (empty)
296s  2: (empty)
296s  3: 7
296s  4: 4
296s  5: 3, 6
296s > 
296s > st_crosses(a, b)
296s although coordinates are longitude/latitude, st_crosses assumes that they are
296s planar
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `crosses'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: (empty)
296s  5: (empty)
296s > 
296s > st_within(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `within'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > st_contains(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `contains'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > st_overlaps(a, b)
296s although coordinates are longitude/latitude, st_overlaps assumes that they are
296s planar
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `overlaps'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: (empty)
296s  5: (empty)
296s > 
296s > st_equals(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `equals'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > st_covers(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `covers'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > st_covered_by(a, b)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `covered_by'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > st_equals_exact(a, b, 0.01)
296s Sparse geometry binary predicate list of length 5, where the predicate
296s was `equals_exact'
296s  1: (empty)
296s  2: (empty)
296s  3: (empty)
296s  4: 1
296s  5: 2
296s > 
296s > # st_is_within_distance(a, b, 2)
296s > 
296s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))))
296s [1] POINT      LINESTRING
296s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE
296s > 
296s > st_geometry_type(st_sfc(st_point(1:2), st_linestring(matrix(1:4,2,2))), by_geometry = FALSE)
296s [1] GEOMETRY
296s 18 Levels: GEOMETRY POINT LINESTRING POLYGON MULTIPOINT ... TRIANGLE
296s > 
296s > st_zm(list(st_point(1:3), st_linestring(matrix(1:6,2,3))))
296s [[1]]
296s 
296s [[2]]
296s 
296s > 
296s > st_zm(list(st_point(1:2), st_linestring(matrix(1:6,3,2))), add = TRUE, "Z")
296s [[1]]
296s 
296s [[2]]
296s 
296s > 
296s > st_transform(st_sfc(st_point(c(0,0)), crs=4326), st_crs("+proj=geocent"))[[1]]
296s POINT (1 2)
296s LINESTRING (1 3, 2 4)
296s POINT (1 2)
296s LINESTRING (1 4, 2 5, 3 6)
296s > 
296s > cbind(st_area(nc_tr[1:5,]), a$AREA)
296s POINT Z (6378137 0 0)
296s            [,1]  [,2]
296s [1,] 1760230516 0.114
296s [2,]  946417787 0.061
296s [3,] 2202223078 0.143
296s [4,] 1074332698 0.070
296s [5,] 2352528086 0.153
296s > 
296s > st_area(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))))
296s [1] 1
296s > 
296s > st_length(st_linestring(rbind(c(0,0),c(0,1))))
296s [1] 1
296s > 
296s > st_length(st_multilinestring(list(rbind(c(0,0),c(0,1)))))
296s [1] 1
296s > 
296s > try(st_length(st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))))
296s [1] 0
296s > 
296s > st_area(st_multilinestring(list(rbind(c(0,0),c(0,1)))))
296s [1] 0
296s > 
296s > # adds the (0.5 0.5) node:
296s > st_union(st_multilinestring(list(rbind(c(0,0),c(1,1)), rbind(c(0,1), c(1,0)))))
296s MULTILINESTRING ((0 0, 1 1), (0 1, 1 0))
296s Error in st_buffer.sfc(sfc, units::set_units(1000, km)) : 
296s   x does not have a crs set: can't convert units
296s > 
296s > p1 = st_point(c(7,52))
296s > p2 = st_point(c(-30,20))
296s > sfc = st_sfc(p1, p2)
296s > try(st_buffer(sfc, units::set_units(1000, km))) # error: no crs
296s > sfc = st_sfc(p1, p2, crs = 4326)
296s > try(zzz <- st_buffer(sfc, units::set_units(1000, km))) # error: wrong units
296s > if (version$os == "linux-gnu") { # FIXME: why does this break on windows - degree symbol?
296s +   x = st_buffer(sfc, units::set_units(0.1, rad))      # OK: will convert to arc_degrees
296s + }
296s > x = st_transform(sfc, 3857)
296s > x = st_buffer(x, units::set_units(1000, km)) # success
296s > 
296s > cr = st_as_sfc("CIRCULARSTRING(0 0,1 0,1 1)")
296s > cr1 = st_sf(a = 1, geometry = cr)
296s > plot(cr)
297s > st_as_grob(cr[[1]])
297s lines[GRID.lines.1] 
297s > 
297s > x = st_as_sfc("MULTISURFACE(CURVEPOLYGON(COMPOUNDCURVE(LINESTRING(-159.399779123 22.226016471, -159.399699153 22.226276431, -159.398736217 22.226118372, -159.398260872 22.226095318, -159.398140792 22.2260564590001, -159.398163058 22.2257268010001, -159.397882642 22.225394244, -159.397397157 22.225057335, -159.397318825 22.2251780230001, -159.396993115 22.225177984, -159.396748242 22.2248808800001, -159.396901679 22.224770398, -159.396876329 22.224673093, -159.399167008 22.224731392, -159.399502204 22.225551382), CIRCULARSTRING(-159.399502204 22.225551382, -159.399622762077 22.2257930044972, -159.399779123 22.226016471))))")
297s > mp <- x[[1]] %>% st_cast("MULTIPOLYGON")
297s > 
297s > x = st_as_sfc("COMPOUNDCURVE(CIRCULARSTRING(0 0, 1 1, 1 0),(1 0, 0 1))")
297s > ls <- x[[1]] %>% st_cast()
297s > class(ls)
297s [1] "XY"         "LINESTRING" "sfg"       
297s > 
297s > is.na(st_bbox(ls))
297s [1] FALSE
297s > 
297s > mp = st_combine(st_buffer(st_sfc(lapply(1:3, function(x) st_point(c(x,x)))), 0.2 * 1:3))
297s > plot(st_centroid(mp), add = TRUE, col = 'red') # centroid of combined geometry
297s > plot(st_centroid(mp, of_largest_polygon = TRUE), add = TRUE, col = 'blue', pch = 3) # center of largest sub-polygon
297s > 
297s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(0.5,0),c(0.5,0.5),c(0.5,0),c(1,0),c(1,1),c(0,1),c(0,0)))))
297s > suppressWarnings(st_is_valid(x))
297s [1] FALSE
297s > y = st_make_valid(x)
297s > y = st_make_valid(x[[1]])
297s > y = st_make_valid(st_sf(a = 1, geom = x))
297s > st_is_valid(y)
297s [1] TRUE
297s > 
297s BEGIN TEST geos.R
297s 
297s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
297s Copyright (C) 2024 The R Foundation for Statistical Computing
297s Platform: arm-unknown-linux-gnueabihf (32-bit)
297s 
297s R is free software and comes with ABSOLUTELY NO WARRANTY.
297s You are welcome to redistribute it under certain conditions.
297s Type 'license()' or 'licence()' for distribution details.
297s 
297s R is a collaborative project with many contributors.
297s Type 'contributors()' for more information and
297s 'citation()' on how to cite R or R packages in publications.
297s 
297s Type 'demo()' for some demos, 'help()' for on-line help, or
297s 'help.start()' for an HTML browser interface to help.
297s Type 'q()' to quit R.
297s 
297s > suppressPackageStartupMessages(library(sf))
297s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"))
297s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
297s > nc_checked = st_transform(nc, 32119, check = TRUE)
297s > ncm = st_transform(nc, 32119)
297s > 
297s > x = st_transform(nc[1:10,], 32119)
297s > st_distance(x)
297s Units: [m]
297s            [,1]      [,2]      [,3]      [,4]      [,5]      [,6]      [,7]
297s  [1,]      0.00      0.00  25651.99 440561.48 299772.34 361529.73 419671.66
297s  [2,]      0.00      0.00      0.00 409429.44 268945.05 332590.52 388545.58
297s  [3,]  25651.99      0.00      0.00 367556.52 227018.38 290298.04 346669.14
297s  [4,] 440561.48 409429.44 367556.52      0.00  67226.86  45537.62      0.00
297s  [5,] 299772.34 268945.05 227018.38  67226.86      0.00      0.00  46527.56
297s  [6,] 361529.73 332590.52 290298.04  45537.62      0.00      0.00  30213.17
297s  [7,] 419671.66 388545.58 346669.14      0.00  46527.56  30213.17      0.00
297s  [8,] 384593.29 354295.06 312351.76  16130.19  11926.86      0.00      0.00
297s  [9,] 262353.97 231217.73 189310.73 140455.97      0.00  64606.27 119564.00
297s [10,]  71138.53  41943.71      0.00 330752.58 190183.42 252373.26 309863.33
297s            [,8]      [,9]     [,10]
297s  [1,] 384593.29 262353.97  71138.53
297s  [2,] 354295.06 231217.73  41943.71
297s  [3,] 312351.76 189310.73      0.00
297s  [4,]  16130.19 140455.97 330752.58
297s  [5,]  11926.86      0.00 190183.42
297s  [6,]      0.00  64606.27 252373.26
297s  [7,]      0.00 119564.00 309863.33
297s  [8,]      0.00  85533.33 275391.07
297s  [9,]  85533.33      0.00 152489.45
297s [10,] 275391.07 152489.45      0.00
297s > 
297s > st_is_valid(nc)
297s   [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [16] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [31] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [46] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [61] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [76] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s  [91] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
297s > 
297s > st_is_empty(st_sfc(st_point(), st_linestring()))
297s [1] TRUE TRUE
297s > 
297s > ops = c("intersects", #"disjoint", 
297s + "touches", "crosses", "within", "contains", "overlaps", "equals", "covers", "covered_by", "equals_exact")
297s > for (op in ops) {
297s + 	x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, FALSE)
297s + 	x = sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE)
297s + }
297s > 
297s > ops = c("intersects", #"disjoint", 
297s + "touches", "crosses", "within", "contains", "overlaps", "covers", "covered_by")
297s > df = data.frame(ops = ops)
297s > df$equal = NA
297s > for (op in ops)
297s + 	df[df$ops == op, "equal"] = identical(
297s + 		sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE, FALSE),
297s + 		sf:::st_geos_binop(op, ncm[1:50,], ncm[51:100,], 0, NA_character_, TRUE,  TRUE)
297s + 	)
298s > df
298s          ops equal
298s 1 intersects  TRUE
298s 2    touches  TRUE
298s 3    crosses  TRUE
298s 4     within  TRUE
298s 5   contains  TRUE
298s 6   overlaps  TRUE
298s 7     covers  TRUE
298s 8 covered_by  TRUE
298s > 
298s > st_contains_properly(ncm[1:3,], ncm[1:3])
298s Sparse geometry binary predicate list of length 3, where the predicate
298s was `contains_properly'
298s  1: (empty)
298s  2: (empty)
298s  3: (empty)
298s > 
298s > st_combine(nc)
298s Geometry set for 1 feature 
298s Geometry type: MULTIPOLYGON
298s Dimension:     XY
298s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
298s Geodetic CRS:  NAD27
298s > 
298s > st_dimension(st_sfc(st_point(0:1), st_linestring(rbind(c(0,0),c(1,1))), 
298s + 	st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))))
298s MULTIPOLYGON (((-81.47276 36.23436, -81.54084 3...
298s [1] 0 1 2
298s > 
298s > ncbb = st_as_sfc(st_bbox(nc))
298s > g = st_make_grid(ncbb)
298s > x = st_intersection(nc, g)
299s Warning message:
299s attribute variables are assumed to be spatially constant throughout all geometries 
299s > x = st_intersection(g, nc)
301s > 
301s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
301s + st_linestring(rbind(c(0,0),c(10,0))))
301s > 
301s > suppressWarnings(RNGversion("3.5.3"))
301s > set.seed(13531)
301s > 
301s > st_line_sample(ls, density = 1, type = "random")
301s Geometry set for 2 features 
301s Geometry type: MULTIPOINT
301s Dimension:     XY
301s Bounding box:  xmin: 0 ymin: 0 xmax: 6.880179 ymax: 0.8878369
301s CRS:           NA
301s MULTIPOINT ((0 0.8878369))
301s MULTIPOINT ((0.2986488 0), (2.48417 0), (2.5678...
301s > 
301s > g = st_make_grid(ncbb, n = c(20,10))
301s > 
301s > a1 = st_interpolate_aw(nc["BIR74"], g, FALSE)
307s > sum(a1$BIR74) / sum(nc$BIR74) # not close to one: property is assumed spatially intensive
307s [1] 1.436123
307s > a2 = st_interpolate_aw(nc["BIR74"], g, extensive = TRUE)
307s Warning message:
307s In st_interpolate_aw.sf(nc["BIR74"], g, FALSE) :
307s   st_interpolate_aw assumes attributes are constant or uniform over areas of x
313s Warning message:
313s In st_interpolate_aw.sf(nc["BIR74"], g, extensive = TRUE) :
313s   st_interpolate_aw assumes attributes are constant or uniform over areas of x
313s > sum(a2$BIR74) / sum(nc$BIR74)
313s [1] 1
313s > 
313s > # missing x:
313s > g = st_make_grid(offset = c(0,0), cellsize = c(1,1), n = c(10,10))
313s > g = st_make_grid(what = "centers")
313s > length(g)
313s [1] 648
313s > g = st_make_grid(what = "corners")
313s > length(g)
313s [1] 703
313s > 
313s > g1 = st_make_grid(ncbb, 0.1, what = "polygons", square = FALSE)
314s > g2 = st_make_grid(ncbb, 0.1, what = "points", square = FALSE)
314s > 
314s > # st_line_merge:
314s > mls = st_multilinestring(list(rbind(c(0,0), c(1,1)), rbind(c(2,0), c(1,1))))
314s > st_line_merge(mls)
314s > 
314s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.5.0") > -1, silent = TRUE))) {
314s +  # voronoi:
314s +  set.seed(1)
314s +  x = st_multipoint(matrix(runif(10),,2))
314s +  box = st_polygon(list(rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0))))
314s +  v = st_sfc(st_voronoi(x, st_sfc(box)))
314s +  plot(v, col = 0, border = 1, axes = TRUE)
314s +  plot(box, add = TRUE, col = 0, border = 1) # a larger box is returned, as documented
314s +  plot(x, add = TRUE, col = 'red', cex=2, pch=16)
314s +  plot(st_intersection(st_cast(v), box)) # clip to smaller box
314s +  plot(x, add = TRUE, col = 'red', cex=2, pch=16)
314s + 
314s +  v = st_voronoi(x)
314s +  print(class(v))
314s +  v = st_sfc(st_voronoi(st_sfc(x)))
314s +  print(class(v))
314s +  v = st_voronoi(st_sf(a = 1, geom = st_sfc(x)))
314s +  print(class(v))
314s + }
314s LINESTRING (0 0, 1 1, 2 0)
314s [1] "XY"                 "GEOMETRYCOLLECTION" "sfg"               
314s [1] "sfc_GEOMETRYCOLLECTION" "sfc"                   
314s [1] "sf"         "data.frame"
314s > 
314s > i = st_intersects(ncm, ncm[1:88,])
314s > all.equal(i, t(t(i)))
314s [1] TRUE
314s > 
314s > # check use of pattern in st_relate:
314s > sfc = st_as_sfc(st_bbox(st_sfc(st_point(c(0,0)), st_point(c(3,3)))))
314s > grd = st_make_grid(sfc, n = c(3,3))
314s > st_intersects(grd)
314s Sparse geometry binary predicate list of length 9, where the predicate
314s was `intersects'
314s  1: 1, 2, 4, 5
314s  2: 1, 2, 3, 4, 5, 6
314s  3: 2, 3, 5, 6
314s  4: 1, 2, 4, 5, 7, 8
314s  5: 1, 2, 3, 4, 5, 6, 7, 8, 9
314s  6: 2, 3, 5, 6, 8, 9
314s  7: 4, 5, 7, 8
314s  8: 4, 5, 6, 7, 8, 9
314s  9: 5, 6, 8, 9
314s > st_relate(grd, pattern = "****1****")
314s Sparse geometry binary predicate list of length 9, where the predicate
314s was `relate_pattern'
314s  1: 1, 2, 4
314s  2: 1, 2, 3, 5
314s  3: 2, 3, 6
314s  4: 1, 4, 5, 7
314s  5: 2, 4, 5, 6, 8
314s  6: 3, 5, 6, 9
314s  7: 4, 7, 8
314s  8: 5, 7, 8, 9
314s  9: 6, 8, 9
314s > st_relate(grd, pattern = "****0****")
314s Error : use st_disjoint for this pattern
314s Sparse geometry binary predicate list of length 9, where the predicate
314s was `relate_pattern'
314s  1: 5
314s  2: 4, 6
314s  3: 5
314s  4: 2, 8
314s  5: 1, 3, 7, 9
314s  6: 2, 8
314s  7: 5
314s  8: 4, 6
314s  9: 5
314s > st_rook = function(a, b = a, ...) st_relate(a, b, pattern = "F***1****", ...)
314s > st_rook(grd, sparse = FALSE)
314s        [,1]  [,2]  [,3]  [,4]  [,5]  [,6]  [,7]  [,8]  [,9]
314s  [1,] FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE FALSE
314s  [2,]  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE
314s  [3,] FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE FALSE FALSE
314s  [4,]  TRUE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE FALSE
314s  [5,] FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE
314s  [6,] FALSE FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE  TRUE
314s  [7,] FALSE FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE
314s  [8,] FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE
314s  [9,] FALSE FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE
314s > 
314s > #if (Sys.getenv("USER") %in% c("edzer", "travis")) { # memory leaks:
314s >   try(st_relate(st_point(), st_point(), pattern = "FF*FF****")) # error: use st_disjoint
314s > #}
314s > 
314s > a = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], 100000, sparse = FALSE)
314s > b = st_is_within_distance(nc[c(1:3,20),], nc[1:3,], units::set_units(100000, m), sparse = FALSE)
314s > all.equal(a, b)
314s [1] TRUE
314s > x = st_is_within_distance(nc[1:3,], nc[1:5,], 100000)
314s > y = st_is_within_distance(nc[1:3,], nc[1:5,], units::set_units(100, km))
314s > all.equal(x, y)
314s [1] TRUE
314s > 
314s > nc_3857 = st_transform(nc, 3857)
314s > a = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], 100000, sparse = FALSE)
314s > b = st_is_within_distance(nc_3857[c(1:3,20),], nc_3857[1:3,], units::set_units(100000, m), sparse = FALSE)
314s > all.equal(a, b)
314s [1] TRUE
314s > x = st_is_within_distance(nc_3857, nc_3857, 100000)
314s > y = st_is_within_distance(nc_3857, nc_3857, units::set_units(100, km))
315s > all.equal(x, y)
315s [1] TRUE
315s > 
315s > pe = st_sfc(st_point())
315s > p = st_sfc(st_point(c(0,0)), st_point(c(0,1)), st_point(c(0,2)))
315s > st_distance(p, p)
315s      [,1] [,2] [,3]
315s [1,]    0    1    2
315s [2,]    1    0    1
315s [3,]    2    1    0
315s > st_distance(p, pe)
315s      [,1]
315s [1,]   NA
315s [2,]   NA
315s [3,]   NA
315s > st_distance(p, p, by_element = TRUE)
315s [1] 0 0 0
315s > st_crs(p) = 4326
315s > st_distance(p, p[c(2,3,1)], by_element = TRUE)
315s Units: [m]
315s [1] 111195.1 111195.1 222390.2
315s > p = st_transform(p, 3587)
315s > st_distance(p, p[c(2,3,1)], by_element = TRUE)
315s Units: [m]
315s [1] 144589.5 142873.3 287462.8
315s > 
315s > # from https://github.com/r-spatial/sf/issues/458 :
315s > pts <- st_sfc(st_point(c(.5,.5)), st_point(c(1.5, 1.5)), st_point(c(2.5, 2.5)))
315s > pol <- st_polygon(list(rbind(c(0,0), c(2,0), c(2,2), c(0,2), c(0,0))))
315s > pol_df <- data.frame(id = 1) 
315s > st_geometry(pol_df) <- st_sfc(pol)
315s > st_intersects(pts, pol_df[pol_df$id == 2,]) # with empty sf/sfc
315s Sparse geometry binary predicate list of length 3, where the predicate
315s was `intersects'
315s  1: (empty)
315s  2: (empty)
315s  3: (empty)
315s > st_intersects(pts, pol_df[pol_df$id == 2,], sparse = FALSE) # with empty sf/sfc
315s     
315s [1,]
315s [2,]
315s [3,]
315s > 
315s > # st_node
315s > l = st_linestring(rbind(c(0,0), c(1,1), c(0,1), c(1,0), c(0,0)))
315s > st_node(l)
315s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1, 0 1, 0.5 0.5), (0.5 0.5, 1 0, 0 0))
315s > st_node(st_sfc(l))
315s Geometry set for 1 feature 
315s Geometry type: MULTILINESTRING
315s Dimension:     XY
315s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
315s CRS:           NA
315s > st_node(st_sf(a = 1, st_sfc(l)))
315s Simple feature collection with 1 feature and 1 field
315s Geometry type: MULTILINESTRING
315s Dimension:     XY
315s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
315s CRS:           NA
315s MULTILINESTRING ((0 0, 0.5 0.5), (0.5 0.5, 1 1,...
315s   a                      st_sfc.l.
315s 1 1 MULTILINESTRING ((0 0, 0.5 ...
315s > 
315s > # print.sgbp:
315s > (lst = st_disjoint(nc, nc))
315s Sparse geometry binary predicate list of length 100, where the
315s predicate was `disjoint'
315s first 10 elements:
315s  1: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, ...
315s  2: 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, ...
315s  3: 1, 4, 5, 6, 7, 8, 9, 11, 12, 13, ...
315s  4: 1, 2, 3, 5, 6, 8, 9, 10, 11, 12, ...
315s  5: 1, 2, 3, 4, 7, 8, 10, 11, 12, 13, ...
315s  6: 1, 2, 3, 4, 7, 9, 10, 11, 12, 13, ...
315s  7: 1, 2, 3, 5, 6, 9, 10, 11, 12, 13, ...
315s  8: 1, 2, 3, 4, 5, 9, 10, 11, 12, 13, ...
315s  9: 1, 2, 3, 4, 6, 7, 8, 10, 11, 12, ...
315s  10: 1, 2, 4, 5, 6, 7, 8, 9, 11, 13, ...
315s > # dim.sgbp:
315s > dim(lst)
315s [1] 100 100
315s > # as.matrix.sgbp:
315s > as.matrix(lst)[1:5, 1:5]
315s       [,1]  [,2]  [,3]  [,4]  [,5]
315s [1,] FALSE FALSE  TRUE  TRUE  TRUE
315s [2,] FALSE FALSE FALSE  TRUE  TRUE
315s [3,]  TRUE FALSE FALSE  TRUE  TRUE
315s [4,]  TRUE  TRUE  TRUE FALSE  TRUE
315s [5,]  TRUE  TRUE  TRUE  TRUE FALSE
315s > # negate:
315s > !lst
315s Sparse geometry binary predicate list of length 100, where the
315s predicate was `!disjoint'
315s first 10 elements:
315s  1: 1, 2, 18, 19
315s  2: 1, 2, 3, 18
315s  3: 2, 3, 10, 18, 23, 25
315s  4: 4, 7, 56
315s  5: 5, 6, 9, 16, 28
315s  6: 5, 6, 8, 28
315s  7: 4, 7, 8, 17
315s  8: 6, 7, 8, 17, 20, 21
315s  9: 5, 9, 15, 16, 24, 31
315s  10: 3, 10, 12, 25, 26
315s > # as.data.frame:
315s > head(as.data.frame(lst), 10)
315s    row.id col.id
315s 1       1      3
315s 2       1      4
315s 3       1      5
315s 4       1      6
315s 5       1      7
315s 6       1      8
315s 7       1      9
315s 8       1     10
315s 9       1     11
315s 10      1     12
315s > 
315s > # snap:
315s > nc1 = st_transform(nc, 32119)
315s > g = st_make_grid(nc1, c(5000,5000), what = "centers")
315s > s = st_snap(nc1[1:3,], g, 2501*sqrt(2))
315s > sfg = st_snap(st_geometry(nc1)[[1]], g, 2501*sqrt(2))
315s > sfg = st_snap(st_geometry(nc1)[[1]], st_combine(g), 2501*sqrt(2))
315s > 
315s > # Hausdorff distance: http://geos.refractions.net/ro/doxygen_docs/html/classgeos_1_1algorithm_1_1distance_1_1DiscreteHausdorffDistance.html
315s > A = st_as_sfc("LINESTRING (0 0, 100 0, 10 100, 10 100)")
315s > B = st_as_sfc("LINESTRING (0 100, 0 10, 80 10)")
315s > st_distance(c(A,B))
315s          [,1]     [,2]
315s [1,] 0.000000 8.176236
315s [2,] 8.176236 0.000000
315s > st_distance(c(A,B), which = "Hausdorff")
315s          [,1]     [,2]
315s [1,]  0.00000 22.36068
315s [2,] 22.36068  0.00000
315s > st_distance(c(A,B), which = "Hausdorff", par = 0.001)
315s              [,1]         [,2]
315s [1,] 2.929643e-14 4.789000e+01
315s [2,] 4.789000e+01 2.131628e-14
315s > LE = st_as_sfc("LINESTRING EMPTY")
315s > st_distance(c(A, LE), which = "Hausdorff", par = 0.001)
315s              [,1] [,2]
315s [1,] 2.929643e-14   NA
315s [2,]           NA   NA
315s > 
315s > # one-argument st_intersection and st_difference:
315s > set.seed(131)
315s > m = rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))
315s > p = st_polygon(list(m))
315s > n = 100
315s > l = vector("list", n)
315s > for (i in 1:n)
315s +    l[[i]] = p + 10 * runif(2)
315s > s = st_sfc(l)
315s > plot(s, col = sf.colors(categorical = TRUE, alpha = .5))
315s > d = st_difference(s) # sequential differences: s1, s2-s1, s3-s2-s1, ...
315s > plot(d, col = sf.colors(categorical = TRUE, alpha = .5))
315s > i = st_intersection(s) # all intersections
315s > plot(i, col = sf.colors(categorical = TRUE, alpha = .5))
315s > summary(lengths(st_overlaps(s, s)))
315s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
315s    0.00    2.00    3.50    3.66    5.00    8.00 
315s > summary(lengths(st_overlaps(d, d)))
315s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
315s       0       0       0       0       0       0 
315s > summary(lengths(st_overlaps(i, i)))
316s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
316s       0       0       0       0       0       0 
316s > 
316s > sf = st_sf(s)
316s > i = st_intersection(sf) # all intersections
316s > plot(i["n.overlaps"])
316s > summary(i$n.overlaps - lengths(i$origins))
316s    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
316s       0       0       0       0       0       0 
316s > 
316s > # st_nearest_points:
316s > pt1 = st_point(c(.1,.1))
316s > pt2 = st_point(c(.9,.9))
316s > b1 = st_buffer(pt1, 0.1)
316s > b2 = st_buffer(pt2, 0.1)
316s > plot(b1, xlim = c(0,1), ylim = c(0,1))
316s > plot(b2, add = TRUE)
316s > (ls0 = try(st_nearest_points(b1, b2))) # sfg
316s Geometry set for 1 feature 
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
316s CRS:           NA
316s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2)))) # sfc
316s Geometry set for 1 feature 
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
316s CRS:           NA
316s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
316s > (ls = try(st_nearest_points(st_sfc(b1), st_sfc(b2), pairwise = TRUE))) # sfc
316s Geometry set for 1 feature 
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 0.1707107 ymin: 0.1707107 xmax: 0.8292893 ymax: 0.8292893
316s CRS:           NA
316s > identical(ls0, ls)
316s [1] TRUE
316s > # plot(ls, add = TRUE, col = 'red')
316s > 
316s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf"))
316s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
316s LINESTRING (0.1707107 0.1707107, 0.8292893 0.82...
316s > plot(st_geometry(nc))
316s > ls = try(st_nearest_points(nc[1,], nc))
316s > # plot(ls, col = 'red', add = TRUE)
316s > pts = st_cast(ls, "POINT") # gives all start & end points
316s > # starting, "from" points, corresponding to x:
316s > plot(pts[seq(1, 200, 2)], add = TRUE, col = 'blue')
316s There were 50 or more warnings (use warnings() to see the first 50)
316s > # ending, "to" points, corresponding to y:
316s > plot(pts[seq(2, 200, 2)], add = TRUE, col = 'red')
316s > 
316s > # points to nearest features
316s > ls1 = st_linestring(rbind(c(0,0), c(1,0)))
316s > ls2 = st_linestring(rbind(c(0,0.1), c(1,0.1)))
316s > ls3 = st_linestring(rbind(c(0,1), c(1,1)))
316s > (l = st_sfc(ls1, ls2, ls3))
316s Geometry set for 3 features 
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
316s CRS:           NA
316s > 
316s > p1 = st_point(c(0.1, -0.1))
316s > p2 = st_point(c(0.1, 0.11))
316s > p3 = st_point(c(0.1, 0.09))
316s > p4 = st_point(c(0.1, 0.9))
316s > p5 = st_point()
316s > 
316s > (p = st_sfc(p1, p2, p3, p4, p5))
316s Geometry set for 5 features  (with 1 geometry empty)
316s Geometry type: POINT
316s LINESTRING (0 0, 1 0)
316s Dimension:     XY
316s Bounding box:  xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 0.9
316s CRS:           NA
316s LINESTRING (0 0.1, 1 0.1)
316s LINESTRING (0 1, 1 1)
316s > #st_nearest_points(p, l)
316s > n = try(st_nearest_feature(p,l))
316s POINT (0.1 -0.1)
316s POINT (0.1 0.11)
316s POINT (0.1 0.09)
316s POINT (0.1 0.9)
316s POINT EMPTY
316s > if (!inherits(n, "try-error")) {
316s +   print(st_nearest_points(p, l[n], pairwise = TRUE))
316s +   print(st_nearest_feature(p, l))
316s +   print(st_nearest_feature(p, st_sfc()))
316s +   print(st_nearest_feature(st_sfc(), l))
316s + }
316s Geometry set for 5 features  (with 1 geometry empty)
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 0.1 ymin: -0.1 xmax: 0.1 ymax: 1
316s CRS:           NA
316s LINESTRING (0.1 -0.1, 0.1 0)
316s [1]  1  2  2  3 NA
316s [1] NA NA NA NA NA
316s integer(0)
316s > 
316s > # can do centroid of empty geom:
316s > st_centroid(st_polygon())
316s > 
316s > #999:
316s > pt = data.frame(x=1:2, y=1:2,a=letters[1:2])
316s > pt = st_as_sf(pt, coords=c("x","y"))
316s > 
316s > bf =st_buffer(pt, dist=0.3)
316s > 
316s > st_within(pt,bf, sparse=FALSE)
316s       [,1]  [,2]
316s [1,]  TRUE FALSE
316s [2,] FALSE  TRUE
316s > st_within(pt[1,], bf[1,], sparse = FALSE)
316s      [,1]
316s [1,] TRUE
316s > st_relate(pt[1,], bf[1,], pattern = "T*F**F***", sparse = FALSE)
316s      [,1]
316s [1,] TRUE
316s > 
316s > sf:::is_symmetric(pattern = "010121010")
316s [1] TRUE
316s > sf:::is_symmetric(pattern = "010121021")
316s [1] FALSE
316s > 
316s > st_intersects(st_point(0:1), st_point(2:3)) # sfg method
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: (empty)
316s > 
316s > if (isTRUE(try(compareVersion(sf_extSoftVersion()["GEOS"], "3.7.0") > -1, silent = TRUE))) {
316s + 	ls = st_linestring(rbind(c(1,1), c(2,2), c(3,3)))
316s + 	print(st_reverse(ls))
316s + 	print(st_reverse(st_sfc(ls)))
316s + 	print(st_reverse(st_sf(a = 2, geom = st_sfc(ls))))
316s + }
316s Geometry set for 1 feature 
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
316s CRS:           NA
316s Simple feature collection with 1 feature and 1 field
316s Geometry type: LINESTRING
316s Dimension:     XY
316s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
316s CRS:           NA
316s   a                       geom
316s 1 2 LINESTRING (3 3, 2 2, 1 1)
316s > 
316s > p = st_polygon(list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0))))
316s > y = st_sfc(p)
316s > x = st_sfc(p + 1.001)
316s > 
316s > x %>% st_set_precision(0) %>% st_intersects(y)
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: (empty)
316s > x %>% st_set_precision(10000) %>% st_intersects(y)
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: (empty)
316s > x %>% st_set_precision(1000) %>% st_intersects(y)
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: (empty)
316s > x %>% st_set_precision(501) %>% st_intersects(y) # no
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: (empty)
316s > x %>% st_set_precision(500) %>% st_intersects(y) # yes
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: 1
316s > x %>% st_set_precision(100) %>% st_intersects(y)
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: 1
316s > x %>% st_set_precision(10) %>% st_intersects(y)
316s Sparse geometry binary predicate list of length 1, where the predicate
316s was `intersects'
316s  1: 1
316s > 
316s > p1 = st_point(0:1)
316s > p2 = st_point(2:1)
316s > p = st_sf(a = letters[1:8], geom = st_sfc(p1, p1, p2, p1, p1, p2, p2, p1))
316s > st_equals(p)
316s Sparse geometry binary predicate list of length 8, where the predicate
316s was `equals'
316s  1: 1, 2, 4, 5, 8
316s  2: 1, 2, 4, 5, 8
316s  3: 3, 6, 7
316s  4: 1, 2, 4, 5, 8
316s  5: 1, 2, 4, 5, 8
316s  6: 3, 6, 7
316s  7: 3, 6, 7
316s  8: 1, 2, 4, 5, 8
316s > st_equals(p, remove_self = TRUE)
316s Sparse geometry binary predicate list of length 8, where the predicate
316s was `equals', with remove_self = TRUE
316s  1: 2, 4, 5, 8
316s  2: 1, 4, 5, 8
316s  3: 6, 7
316s  4: 1, 2, 5, 8
316s  5: 1, 2, 4, 8
316s  6: 3, 7
316s  7: 3, 6
316s  8: 1, 2, 4, 5
316s > (u = st_equals(p, retain_unique = TRUE))
316s Sparse geometry binary predicate list of length 8, where the predicate
316s was `equals', with retain_unique = TRUE
316s  1: 2, 4, 5, 8
316s  2: 4, 5, 8
316s  3: 6, 7
316s  4: 5, 8
316s  5: 8
316s  6: 7
316s  7: (empty)
316s  8: (empty)
316s > # retain the records with unique geometries:
316s > p[-unlist(u),]
316s Simple feature collection with 2 features and 1 field
316s Geometry type: POINT
316s Dimension:     XY
316s Bounding box:  xmin: 0 ymin: 1 xmax: 2 ymax: 1
316s CRS:           NA
316s   a        geom
316s 1 a POINT (0 1)
316s 3 c POINT (2 1)
316s > 
316s LINESTRING (0.1 0.11, 0.1 0.1)
316s LINESTRING (0.1 0.09, 0.1 0.1)
316s LINESTRING (0.1 0.9, 0.1 1)
316s LINESTRING EMPTY
316s POINT EMPTY
316s LINESTRING (3 3, 2 2, 1 1)
316s LINESTRING (3 3, 2 2, 1 1)
316s BEGIN TEST graticule.R
316s 
316s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
316s Copyright (C) 2024 The R Foundation for Statistical Computing
316s Platform: arm-unknown-linux-gnueabihf (32-bit)
316s 
316s R is free software and comes with ABSOLUTELY NO WARRANTY.
316s You are welcome to redistribute it under certain conditions.
316s Type 'license()' or 'licence()' for distribution details.
316s 
316s R is a collaborative project with many contributors.
316s Type 'contributors()' for more information and
316s 'citation()' on how to cite R or R packages in publications.
316s 
316s Type 'demo()' for some demos, 'help()' for on-line help, or
316s 'help.start()' for an HTML browser interface to help.
316s Type 'q()' to quit R.
316s 
316s > if (require(maps, quietly = TRUE)) {
316s + m = map('usa', plot = FALSE, fill = TRUE)
316s + suppressPackageStartupMessages(library(sf))
316s + m0 <- st_as_sfc(m)
316s + m <- st_as_sf(m)
316s + 
316s + laea = st_crs("+proj=laea +lat_0=30 +lon_0=-95") # Lambert equal area
316s + m <- st_transform(st_as_sf(m), laea)
316s + 
316s + bb = st_bbox(m)
316s + bbox = st_linestring(rbind(c( bb[1],bb[2]),c( bb[3],bb[2]),c( bb[3],bb[4]),c( bb[1],bb[4]),c( bb[1],bb[2])))
316s + 
316s + g = st_graticule(m)
316s + plot(m, xlim = 1.2 * c(-2450853.4, 2186391.9))
316s + plot(g[1], add = TRUE, col = 'grey')
316s + plot(bbox, add = TRUE)
316s + points(g$x_start, g$y_start, col = 'red')
316s + points(g$x_end, g$y_end, col = 'blue')
316s + 
316s + invisible(lapply(seq_len(nrow(g)), function(i) {
316s + 	if (g$type[i] == "N" && g$x_start[i] - min(g$x_start) < 1000)
316s + 		text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 
316s + 			srt = g$angle_start[i], pos = 2, cex = .7)
316s + 	if (g$type[i] == "E" && g$y_start[i] - min(g$y_start) < 1000)
316s + 		text(g[i,"x_start"], g[i,"y_start"], labels = parse(text = g[i,"degree_label"]), 
316s + 			srt = g$angle_start[i] - 90, pos = 1, cex = .7)
316s + 	if (g$type[i] == "N" && g$x_end[i] - max(g$x_end) > -1000)
316s + 		text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 
316s + 			srt = g$angle_end[i], pos = 4, cex = .7)
316s + 	if (g$type[i] == "E" && g$y_end[i] - max(g$y_end) > -1000)
316s + 		text(g[i,"x_end"], g[i,"y_end"], labels = parse(text = g[i,"degree_label"]), 
316s + 			srt = g$angle_end[i] - 90, pos = 3, cex = .7)
316s + }))
316s + 
316s + plot(m, graticule = st_crs(4326))
316s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
316s + # options(warn=2)
316s + g = st_graticule(nc, datum = st_crs(nc))
316s + #g = st_graticule(nc)
316s + 
316s + plot(nc[1], graticule = st_crs(nc))
316s + 
316s + plot(nc[1], graticule = st_crs(nc), axes = TRUE)
316s + 
316s + g = st_graticule()
316s + 
316s + if (require(ggplot2, quietly = TRUE) && utils::packageVersion("ggplot2") > "2.2.1") {
316s +   ggplot() + geom_sf(data = st_set_crs(nc, NA_crs_)) # NA_crs_ for crs
316s + }
316s + 
316s + library(maps) #421
316s + (wrld2 = st_as_sf(map('world2', plot=FALSE, fill=TRUE )))
316s + try(plot(wrld2, graticule = TRUE))
316s + }
318s > 
319s BEGIN TEST grid.R
319s 
319s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
319s Copyright (C) 2024 The R Foundation for Statistical Computing
319s Platform: arm-unknown-linux-gnueabihf (32-bit)
319s 
319s R is free software and comes with ABSOLUTELY NO WARRANTY.
319s You are welcome to redistribute it under certain conditions.
319s Type 'license()' or 'licence()' for distribution details.
319s 
319s R is a collaborative project with many contributors.
319s Type 'contributors()' for more information and
319s 'citation()' on how to cite R or R packages in publications.
319s 
319s Type 'demo()' for some demos, 'help()' for on-line help, or
319s 'help.start()' for an HTML browser interface to help.
319s Type 'q()' to quit R.
319s 
319s > # MULTIPOLYGONS
319s > suppressPackageStartupMessages(library(sf))
320s > library(grid)
320s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
320s > grid.newpage()
320s > # pushViewport(viewport(width = 0.8, height = 0.8))
320s > pushViewport(st_viewport(nc))
320s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
320s > 
320s > # POLYGONS
320s > # nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", type = 3)
320s > nc = st_read(system.file("shape/nc.shp", package="sf"), type = 3, quiet = TRUE)
320s > grid.newpage()
320s > pushViewport(st_viewport(nc))
320s > invisible(lapply(st_geometry(nc), function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
320s > 
320s > # POINTS:
320s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
320s +  data(meuse, package = "sp")
320s +  meuse_sf = st_as_sf(meuse, coords = c("x", "y"), crs = 28992, agr = "constant")
320s +  grid.newpage()
320s +  pushViewport(st_viewport(meuse_sf))
320s +  invisible(lapply(st_geometry(meuse_sf), 
320s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
320s + }
320s > 
320s > # MULTIPOINTS
320s > mp = st_multipoint(cbind(runif(100), runif(100)))
320s > grid.newpage()
320s > pushViewport(st_viewport(mp))
320s > grid.draw(st_as_grob(mp, gp = gpar(fill = 'red')))
320s > 
320s > # LINESTRING
320s > ls = st_linestring(cbind(1:10, rnorm(10)))
320s > grid.newpage()
320s > pushViewport(st_viewport(ls))
320s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red')))
320s > 
320s > # MULTILINESTRING
320s > ls = st_multilinestring(list(cbind(1:10, 5+rnorm(10)), cbind(1:10, rnorm(10)), cbind(1:10, -5+rnorm(10))))
320s > grid.newpage()
320s > pushViewport(st_viewport(ls))
320s > grid.draw(st_as_grob(ls, gp = gpar(fill = 'red')))
320s > 
320s > if (require(sp, quietly = TRUE)) {
320s + # POINTS, right aspect in Long/Lat:
320s + meuse_ll = st_transform(meuse_sf, 4326)
320s + grid.newpage()
320s + pushViewport(st_viewport(meuse_ll))
320s + invisible(lapply(st_geometry(meuse_ll), 
320s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
320s + 
320s + # WRONG aspect:
320s + st_crs(meuse_ll) = NA
320s + grid.newpage()
320s + pushViewport(st_viewport(meuse_ll))
320s + invisible(lapply(st_geometry(meuse_ll), 
320s + 	function(x) grid.draw(st_as_grob(x, gp = gpar(fill = 'red')))))
320s + }
320s > 
320s > gc = st_geometrycollection(list(st_point(0:1), st_linestring(matrix(1:4,2))))
320s > grb = st_as_grob(gc)
320s > 
320s BEGIN TEST maps.R
320s 
320s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
320s Copyright (C) 2024 The R Foundation for Statistical Computing
320s Platform: arm-unknown-linux-gnueabihf (32-bit)
320s 
320s R is free software and comes with ABSOLUTELY NO WARRANTY.
320s You are welcome to redistribute it under certain conditions.
320s Type 'license()' or 'licence()' for distribution details.
320s 
320s R is a collaborative project with many contributors.
320s Type 'contributors()' for more information and
320s 'citation()' on how to cite R or R packages in publications.
320s 
320s Type 'demo()' for some demos, 'help()' for on-line help, or
320s 'help.start()' for an HTML browser interface to help.
320s Type 'q()' to quit R.
320s 
320s > suppressPackageStartupMessages(library(sf))
320s > 
320s > if (require(maps, quietly = TRUE)) {
320s +  m = map(xlim = c(4,9), ylim = c(48,55), fill = TRUE, plot = FALSE)
320s +  st_as_sf(m)
320s +  m = map(xlim = c(4,9), ylim = c(48,55), plot = FALSE)
320s +  st_as_sf(m, fill = FALSE)
320s +  st_as_sf(map(), fill = FALSE)
320s +  st_as_sf(map(fill = TRUE))
320s +  st_as_sf(map(), fill = FALSE, group = FALSE)
320s +  st_as_sf(map(fill = TRUE), group = FALSE)
320s + }
321s Simple feature collection with 1627 features and 1 field
321s Geometry type: MULTIPOLYGON
321s Dimension:     XY
321s Bounding box:  xmin: -180 ymin: -85.19218 xmax: 190.2708 ymax: 83.59961
321s Geodetic CRS:  +proj=longlat +ellps=clrk66 +no_defs +type=crs
321s First 10 features:
321s                                                                  ID
321s Aruba                                                         Aruba
321s Afghanistan                                             Afghanistan
321s Angola                                                       Angola
321s Angola:Cabinda                                       Angola:Cabinda
321s Anguilla                                                   Anguilla
321s Albania                                                     Albania
321s Finland:Aland Islands:Foglo             Finland:Aland Islands:Foglo
321s Finland:Aland Islands:Eckero           Finland:Aland Islands:Eckero
321s Finland:Aland Islands:Fasta Aland Finland:Aland Islands:Fasta Aland
321s Andorra                                                     Andorra
321s                                                             geom
321s Aruba                             MULTIPOLYGON (((-69.89912 1...
321s Afghanistan                       MULTIPOLYGON (((74.89131 37...
321s Angola                            MULTIPOLYGON (((23.9665 -10...
321s Angola:Cabinda                    MULTIPOLYGON (((12.21367 -5...
321s Anguilla                          MULTIPOLYGON (((-63.00122 1...
321s Albania                           MULTIPOLYGON (((20.06396 42...
321s Finland:Aland Islands:Foglo       MULTIPOLYGON (((20.61133 60...
321s Finland:Aland Islands:Eckero      MULTIPOLYGON (((19.6623 60....
321s Finland:Aland Islands:Fasta Aland MULTIPOLYGON (((19.98955 60...
321s Andorra                           MULTIPOLYGON (((1.706055 42...
321s > 
321s BEGIN TEST plot.R
322s 
322s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
322s Copyright (C) 2024 The R Foundation for Statistical Computing
322s Platform: arm-unknown-linux-gnueabihf (32-bit)
322s 
322s R is free software and comes with ABSOLUTELY NO WARRANTY.
322s You are welcome to redistribute it under certain conditions.
322s Type 'license()' or 'licence()' for distribution details.
322s 
322s R is a collaborative project with many contributors.
322s Type 'contributors()' for more information and
322s 'citation()' on how to cite R or R packages in publications.
322s 
322s Type 'demo()' for some demos, 'help()' for on-line help, or
322s 'help.start()' for an HTML browser interface to help.
322s Type 'q()' to quit R.
322s 
322s > suppressPackageStartupMessages(library(sf))
322s > options(rgdal_show_exportToProj4_warnings = "none")
322s > 
322s > if (require(dplyr, quietly = TRUE)) {
322s + 
322s + # plot linestrings:
322s + l1 = st_linestring(matrix(runif(6)-0.5,,2))
322s + l2 = st_linestring(matrix(runif(6)-0.5,,2))
322s + l3 = st_linestring(matrix(runif(6)-0.5,,2))
322s + s = st_sf(a=2:4, b=st_sfc(l1,l2,l3))
322s + plot(s, col = s$a, axes = FALSE)
322s + plot(s, col = s$a)
322s + if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
322s +   attr(s$b, "proj4string") = sp::CRS("+proj=longlat +ellps=WGS84 +no_defs")@projargs
322s + }
322s + plot(s, col = s$a, axes = TRUE)
322s + plot(s, col = s$a, lty = s$a, lwd = s$a, pch = s$a, type = 'b')
322s + l4 = st_linestring(matrix(runif(6),,2))
322s + plot(st_sf(a=1,b=st_sfc(l4)), add = TRUE)
322s + # plot multilinestrings:
322s + ml1 = st_multilinestring(list(l1, l2))
322s + ml2 = st_multilinestring(list(l3, l4))
322s + ml = st_sf(a = 2:3, b = st_sfc(ml1, ml2))
322s + plot(ml, col = ml$a, lty = ml$a, lwd = ml$a, pch = ml$a, type = 'b')
322s + # plot points:
322s + p1 = st_point(c(1,2))
322s + p2 = st_point(c(3,3))
322s + p3 = st_point(c(3,0))
322s + p = st_sf(a=2:4, b=st_sfc(p1,p2,p3))
322s + plot(p, col = s$a, axes = TRUE)
322s + plot(p, col = s$a)
322s + plot(p, col = p$a, pch = p$a, cex = p$a, bg = s$a, lwd = 2, lty = 2, type = 'b')
322s + p4 = st_point(c(2,2))
322s + plot(st_sf(a=1, st_sfc(p4)), add = TRUE)
322s + # multipoints:
322s + mp1 = st_multipoint(matrix(1:4,2))
322s + mp2 = st_multipoint(matrix(5:8,2))
322s + mp = st_sf(a = 2:3, b = st_sfc(mp1, mp2))
322s + plot(mp)
322s + plot(mp, col = mp$a, pch = mp$a, cex = mp$a, bg = mp$a, lwd = mp$a, lty = mp$a, type = 'b')
322s + # polygon:
322s + outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
322s + hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
322s + hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
322s + pl1 = st_polygon(list(outer, hole1, hole2))
322s + pl2 = st_polygon(list(outer+10, hole1+10, hole2+10))
322s + po = st_sf(a = 2:3, st_sfc(pl1,pl2))
322s + plot(po, col = po$a, border = rev(po$a), lwd=3)
322s + # multipolygon
322s + r10 = matrix(rep(c(0,10),each=5),5)
322s + pl1 = list(outer, hole1, hole2)
322s + pl2 = list(outer+10, hole1+10, hole2+10)
322s + pl3 = list(outer+r10, hole1+r10, hole2+r10)
322s + mpo1 = st_multipolygon(list(pl1,pl2))
322s + mpo2 = st_multipolygon(list(pl3))
322s + mpo = st_sf(a=2:3, b=st_sfc(mpo1,mpo2))
322s + plot(mpo, col = mpo$a, border = rev(mpo$a), lwd = 2)
322s + # geometrycollection:
322s + gc1 = st_geometrycollection(list(mpo1, st_point(c(21,21)), l1 * 2 + 21))
322s + gc2 = st_geometrycollection(list(mpo2, l2 - 2, l3 - 2, st_point(c(-1,-1))))
322s + gc = st_sf(a=2:3, b = st_sfc(gc1,gc2))
322s + plot(gc, cex = gc$a, col = gc$a, border = rev(gc$a) + 2, lwd = 2)
322s + 
322s + plot(gc1)
322s + 
322s + plot(st_sfc(mp1, mpo1))
322s + 
322s + # color ramp
322s + nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
322s + plot(nc)
322s + plot(nc, axes = TRUE)
322s + plot(nc, col="lightgrey") 
322s + plot(st_centroid(nc), add = TRUE, col = 1)
322s + if ("geometry" %in% names(nc)) {
322s +  nc %>% 
322s +   select(geometry) %>% 
322s +   plot()
322s + }
322s + 
322s + nc$f = cut(nc[[1]], 5)
322s + plot(nc["f"], key.pos = 1)
322s + plot(nc[1],   key.pos = 1)
322s + 
322s + # test background map plotting:
322s + load("bgmap.rda")
322s + merc = st_crs(3857)
322s + WGS84 = st_crs(4326)
322s + nc = st_transform(nc, WGS84)
322s + ## ggmap:
322s + #library(ggmap)
322s + #bgMap = get_map(unname(st_bbox(nc)), source = "google", zoom = 8) 
322s + plot(st_transform(nc[1], merc), bgMap = bgMap)
322s + 
322s + # RgoogleMaps:
322s + #library(RgoogleMaps)
322s + #center = c(mean(st_bbox(nc)[c(2,4)]), mean(st_bbox(nc)[c(1,3)]))
322s + #g = GetMap(center=center, zoom=6) # google
322s + par(mar = c(0,0,1,0))
322s + plot(st_transform(nc, merc), bgMap = g)
322s + 
322s + m = st_make_grid()
322s + st_crs(m) = NA_crs_
322s + m = st_segmentize(m, 2)
322s + st_crs(m) = 4326
322s + plot(m, axes = TRUE)
322s + g = st_transform(m, st_crs("+proj=ortho +lat_0=30 +lon_0=45"), check = TRUE)
322s + plot(g, axes = TRUE)
322s + 
322s + nc[[1]] = NA
322s + nc[[10]] = 1
322s + plot(nc, pal = rainbow, nbreaks = 3)
322s + plot(nc, pal = rainbow, breaks = "jenks", nbreaks = 3)
322s + plot(nc, pal = rainbow, breaks = (0:10)/3)
322s + 
322s + # logz:
322s + nc$e = 10^(nc$SID74)
322s + plot(nc["e"], logz = TRUE)
322s + 
322s + # shared key:
322s + plot(nc[c("SID74", "SID79")], key.pos = -1)
322s + plot(nc[c("BIR74", "BIR79")], key.pos = 1, logz=TRUE)
322s + }
322s 
322s Attaching package: 'dplyr'
322s 
322s The following objects are masked from 'package:stats':
322s 
322s     filter, lag
322s 
322s The following objects are masked from 'package:base':
322s 
322s     intersect, setdiff, setequal, union
322s 
329s There were 13 warnings (use warnings() to see them)
329s > 
329s BEGIN TEST read.R
329s 
329s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
329s Copyright (C) 2024 The R Foundation for Statistical Computing
329s Platform: arm-unknown-linux-gnueabihf (32-bit)
329s 
329s R is free software and comes with ABSOLUTELY NO WARRANTY.
329s You are welcome to redistribute it under certain conditions.
329s Type 'license()' or 'licence()' for distribution details.
329s 
329s R is a collaborative project with many contributors.
329s Type 'contributors()' for more information and
329s 'citation()' on how to cite R or R packages in publications.
329s 
329s Type 'demo()' for some demos, 'help()' for on-line help, or
329s 'help.start()' for an HTML browser interface to help.
329s Type 'q()' to quit R.
329s 
329s > Sys.setenv(TZ="UTC")
329s > suppressPackageStartupMessages(library(sf))
329s > if ("GPKG" %in% st_drivers()$name) {
329s + 	tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", crs = 4267, quiet = TRUE)
329s + 	tst = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name
329s + }
329s > 
329s > tst = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE) # no layer specified
329s > 
329s > # data from https://github.com/edzer/sfr/issues/6
329s > tst = st_read(system.file("shape/storms_xyz.shp", package="sf"), quiet = TRUE)
329s > class(st_geometry(tst))
329s [1] "sfc_LINESTRING" "sfc"           
329s > class(st_geometry(tst)[[1]])
329s [1] "XYZ"        "LINESTRING" "sfg"       
329s > tst = st_read(system.file("shape/storms_xyzm.shp", package="sf"), quiet = TRUE)
329s > class(st_geometry(tst))
329s [1] "sfc_LINESTRING" "sfc"           
329s > class(st_geometry(tst)[[1]])
329s [1] "XYM"        "LINESTRING" "sfg"       
329s > tst = st_read(system.file("shape/storms_xyz_feature.shp", package="sf"), quiet = TRUE)
329s > class(st_geometry(tst))
329s [1] "sfc_LINESTRING" "sfc"           
329s > class(st_geometry(tst)[[1]])
329s [1] "XYZ"        "LINESTRING" "sfg"       
329s > tst = st_read(system.file("shape/storms_xyzm_feature.shp", package="sf"), quiet = TRUE)
329s > class(st_geometry(tst))
329s [1] "sfc_LINESTRING" "sfc"           
329s > class(st_geometry(tst)[[1]])
329s [1] "XYM"        "LINESTRING" "sfg"       
329s > 
329s > if ("GPKG" %in% st_drivers()$name) { # read Int64
329s +     print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE)$AWATER)
329s +     print(st_read(system.file("gpkg/tl.gpkg", package="sf"), quiet = TRUE, int64_as_string = TRUE)$AWATER)
329s + }
329s [1] 1028678842
329s [1] "1028678842"
329s > 
329s > # see https://github.com/edzer/sfr/issues/45 :
329s > if ("OSM" %in% st_drivers()$name && Sys.info()['sysname'] != "Darwin") {
329s + 	osm = system.file("osm/overpass.osm", package="sf")
329s + 	osm_l = st_layers(osm)
329s + 	osm_lc = suppressWarnings(st_layers(osm, do_count = TRUE))
329s + 	osm_r = suppressWarnings(st_read(osm, "multipolygons", quiet = TRUE))
329s + }
329s > 
329s > # layer opening option:
329s > st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE,
329s + 	options = c("ADJUST_TYPE=YES", "ENCODING=CPL_ENC_UTF8"))
329s Simple feature collection with 100 features and 14 fields
329s Geometry type: MULTIPOLYGON
329s Dimension:     XY
329s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
329s Geodetic CRS:  NAD27
329s First 10 features:
329s     AREA PERIMETER CNTY_ CNTY_ID        NAME  FIPS FIPSNO CRESS_ID BIR74 SID74
329s 1  0.114     1.442  1825    1825        Ashe 37009  37009        5  1091     1
329s 2  0.061     1.231  1827    1827   Alleghany 37005  37005        3   487     0
329s 3  0.143     1.630  1828    1828       Surry 37171  37171       86  3188     5
329s 4  0.070     2.968  1831    1831   Currituck 37053  37053       27   508     1
329s 5  0.153     2.206  1832    1832 Northampton 37131  37131       66  1421     9
329s 6  0.097     1.670  1833    1833    Hertford 37091  37091       46  1452     7
329s 7  0.062     1.547  1834    1834      Camden 37029  37029       15   286     0
329s 8  0.091     1.284  1835    1835       Gates 37073  37073       37   420     0
329s 9  0.118     1.421  1836    1836      Warren 37185  37185       93   968     4
329s 10 0.124     1.428  1837    1837      Stokes 37169  37169       85  1612     1
329s    NWBIR74 BIR79 SID79 NWBIR79                       geometry
329s 1       10  1364     0      19 MULTIPOLYGON (((-81.47276 3...
329s 2       10   542     3      12 MULTIPOLYGON (((-81.23989 3...
329s 3      208  3616     6     260 MULTIPOLYGON (((-80.45634 3...
329s 4      123   830     2     145 MULTIPOLYGON (((-76.00897 3...
329s 5     1066  1606     3    1197 MULTIPOLYGON (((-77.21767 3...
329s 6      954  1838     5    1237 MULTIPOLYGON (((-76.74506 3...
329s 7      115   350     2     139 MULTIPOLYGON (((-76.00897 3...
329s 8      254   594     2     371 MULTIPOLYGON (((-76.56251 3...
329s 9      748  1190     2     844 MULTIPOLYGON (((-78.30876 3...
329s 10     160  2038     5     176 MULTIPOLYGON (((-80.02567 3...
329s > 
329s > x <- st_sf(a = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))))
329s > 
329s > try(st_layers("foo")) # cannot open datasource
329s Cannot open data source foo
329s > try(st_read("foo")) # cannot open datasource
329s > try(st_read("x.gpkg", "xyz")) # cannot open layer
329s Error : Open failed.
329s 
329s Error : Cannot open "foo"; The file doesn't seem to exist.
329s Error : Cannot open "x.gpkg"; The file doesn't seem to exist.
329s > try(st_write(c("foo", "bar")))
329s > try(st_write(x, c("foo", "bar")))
329s > try(st_write(x, "foo", driver = "foo"))
329s Error in UseMethod("st_write") : 
329s   no applicable method for 'st_write' applied to an object of class "character"
329s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
329s Error in guess_driver(dns) : length(dsn) == 1 is not TRUE
329s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
329s driver `foo' not available.
329s > if (Sys.getenv("USER") == "travis") {
329s + 	try(st_write(x, "/x", driver = "ESRI Shapefile"))
329s + 	st_write(x, "xxx.gpkg")
329s + 	st_write(x, "xxx.gpkg", append = TRUE, quiet = FALSE) # appends to layer
329s + 	y <- st_sf(b = 1:2, geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2))))
329s + 	try(st_write(y, "xxx.gpkg"))
329s + }
329s Error : Driver not available.
329s 
329s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
329s > 
329s > geom = st_sfc(st_point(0:1), st_multipoint(matrix(1:4,2,2)))
329s > st_write(geom, "geom.gpkg")
329s Writing layer `geom' to data source `geom.gpkg' using driver `GPKG'
329s Writing 2 features with 0 fields and geometry type Unknown (any).
329s > st_write(geom, "geom1.gpkg", layer = "foo")
329s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
329s Writing layer `foo' to data source `geom1.gpkg' using driver `GPKG'
329s Writing 2 features with 0 fields and geometry type Unknown (any).
329s > 
329s > df <- data.frame(
329s +     a = c(0, 1, NA, -Inf, Inf),
329s +     b = c("a", "b", NA, "c", ""),
329s +     c = c(as.Date("2001-01-01"),
329s +           as.Date(c(NA, -99, 0, 1), origin = "1970-01-01")),
329s +     d = c(as.POSIXct("2001-01-01"),
329s +           as.POSIXct(c(NA, -99, 0, 1), origin = "1970-01-01")),
329s +     x = 1:5,
329s +     y = 1:5)
329s > 
329s > x  = st_as_sf(df, coords = c("x", "y"))
329s > 
329s > if ("GPKG" %in% st_drivers()$name) {
329s +  st_write(x, "x2.gpkg", quiet = TRUE)
329s +  y = st_read("x2.gpkg", quiet = TRUE)
329s +  print(y)
329s + }
330s Simple feature collection with 5 features and 4 fields
330s Geometry type: POINT
330s Dimension:     XY
330s Bounding box:  xmin: 1 ymin: 1 xmax: 5 ymax: 5
330s Projected CRS: Undefined Cartesian SRS with unknown unit
330s      a    b          c                   d        geom
330s 1    0    a 2001-01-01 2001-01-01 00:00:00 POINT (1 1)
330s 2    1    b       <NA>                <NA> POINT (2 2)
330s 3   NA <NA> 1969-09-24 1969-12-31 23:58:21 POINT (3 3)
330s 4 -Inf    c 1970-01-01 1970-01-01 00:00:00 POINT (4 4)
330s 5  Inf      1970-01-02 1970-01-01 00:00:01 POINT (5 5)
330s > 
330s > if ("SQLite" %in% st_drivers()$name && require(RSQLite)) {
330s + 	db = system.file("sqlite/meuse.sqlite", package = "sf")
330s + 	dbcon <- dbConnect(dbDriver("SQLite"), db)
330s + 	m = dbReadTable(dbcon, "meuse.sqlite")
330s + 	m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb
330s + 	print(st_sf(m), n = 3)
330s + 	# or:
330s + 	(s = st_read(dbcon, "meuse.sqlite"))[1:3,]
330s + 	dbDisconnect(dbcon)
330s + 
330s + 	db = system.file("sqlite/nc.sqlite", package = "sf")
330s writing: substituting ENGCRS["Undefined Cartesian SRS with unknown unit"] for missing CRS
330s + 	dbcon <- dbConnect(dbDriver("SQLite"), db)
330s + 	m = dbReadTable(dbcon, "nc.sqlite")
330s + 	m$GEOMETRY = st_as_sfc(m$GEOMETRY, spatialite = FALSE) # ISO wkb
330s + 	print(st_sf(m), n = 3)
330s + 	dbDisconnect(dbcon)
330s + 
330s + 	db = system.file("sqlite/b.sqlite", package = "sf") # has an INT8 field
330s + 	b = st_read(db, quiet = TRUE)
330s + 	print(b)
330s + 	b = st_read(db, int64_as_string = TRUE, quiet = TRUE)
330s + 	print(b)
330s + 
330s + 	if (.Platform$endian == "little") {
330s + 	  db = system.file("sqlite/test3.sqlite", package = "sf")
330s + 	  dbcon <- dbConnect(dbDriver("SQLite"), db)
330s + 	  m = dbReadTable(dbcon, "HighWays")
330s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
330s + 	  print(st_sf(m), n = 1)
330s + 	  m = dbReadTable(dbcon, "Towns")
330s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
330s + 	  print(st_sf(m), n = 1)
330s + 	  m = dbReadTable(dbcon, "Regions")
330s + 	  m$Geometry = st_as_sfc(m$Geometry, spatialite = TRUE) # spatialite wkb
330s + 	  print(st_sf(m), n = 1)
330s + 	}
330s + }
330s Loading required package: RSQLite
330s Simple feature collection with 155 features and 13 fields
330s Geometry type: POINT
330s Dimension:     XY
330s Bounding box:  xmin: 178605 ymin: 329714 xmax: 181390 ymax: 333611
330s CRS:           NA
330s First 3 features:
330s   ogc_fid cadmium copper lead zinc  elev       dist   om ffreq soil lime
330s 1       1    11.7     85  299 1022 7.909 0.00135803 13.6     1    1    1
330s 2       2     8.6     81  277 1141 6.983 0.01222430 14.0     1    1    1
330s 3       3     6.5     68  199  640 7.800 0.10302900 13.0     1    1    1
330s   landuse dist.m              GEOMETRY
330s 1      Ah     50 POINT (181072 333611)
330s 2      Ah     30 POINT (181025 333558)
330s 3      Ah    150 POINT (181165 333537)
330s Simple feature collection with 100 features and 15 fields
330s Geometry type: MULTIPOLYGON
330s Dimension:     XY
330s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
330s CRS:           NA
330s First 3 features:
330s   ogc_fid  area perimeter cnty_ cnty_id      name  fips fipsno cress_id bir74
330s 1       1 0.114     1.442  1825    1825      Ashe 37009  37009        5  1091
330s 2       2 0.061     1.231  1827    1827 Alleghany 37005  37005        3   487
330s 3       3 0.143     1.630  1828    1828     Surry 37171  37171       86  3188
330s   sid74 nwbir74 bir79 sid79 nwbir79                       GEOMETRY
330s 1     1      10  1364     0      19 MULTIPOLYGON (((-81.47276 3...
330s 2     0      10   542     3      12 MULTIPOLYGON (((-81.23989 3...
330s 3     5     208  3616     6     260 MULTIPOLYGON (((-80.45634 3...
330s Integer64 values larger than 9.0072e+15 lost significance after conversion to double;
330s use argument int64_as_string = TRUE to import them lossless, as character
330s Simple feature collection with 1 feature and 2 fields
330s Geometry type: POINT
330s Dimension:     XY
330s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
330s CRS:           NA
330s   a       bigint    GEOMETRY
330s 1 1 4.611686e+18 POINT (0 1)
330s Simple feature collection with 1 feature and 2 fields
330s Geometry type: POINT
330s Dimension:     XY
330s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
330s CRS:           NA
330s   a              bigint    GEOMETRY
330s 1 1 4611686018427387904 POINT (0 1)
330s Simple feature collection with 10 features and 2 fields
330s Geometry type: LINESTRING
330s Dimension:     XY
330s Bounding box:  xmin: 645003 ymin: 4822568 xmax: 748805.6 ymax: 4992001
330s Projected CRS: WGS 84 / UTM zone 32N
330s First 1 features:
330s   PK_UID    Name                       Geometry
330s 1      1 Unknown LINESTRING (668540.7 485826...
330s Simple feature collection with 8101 features and 6 fields
330s Geometry type: POINT
330s Dimension:     XY
330s Bounding box:  xmin: 319224 ymin: 3934674 xmax: 1308585 ymax: 5214373
330s Projected CRS: WGS 84 / UTM zone 32N
330s First 1 features:
330s   PK_UID    Name Peoples LocalCounc County Region                 Geometry
330s 1      1 Brozolo     435          1      0      0 POINT (427002.8 4996361)
330s Simple feature collection with 10 features and 2 fields
330s Geometry type: MULTIPOLYGON
330s Dimension:     XY
330s Bounding box:  xmin: 378359.8 ymin: 4198234 xmax: 1211486 ymax: 5036803
330s Projected CRS: WGS 84 / UTM zone 32N
330s First 1 features:
330s   PK_UID   Name                       Geometry
330s 1      1 VENETO MULTIPOLYGON (((752912.3 50...
330s > 
330s > csv = system.file("csv/pt.csv", package = "sf")
330s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_real_)
330s [1] TRUE
330s > identical(st_read(quiet = TRUE, csv, int64_as_string = TRUE, stringsAsFactors = FALSE,
330s + 	options = "AUTODETECT_TYPE=Yes")$Int64[3], NA_character_)
330s [1] TRUE
330s > identical(st_read(quiet = TRUE, csv, options = "AUTODETECT_TYPE=Yes")$Int32[3], NA_integer_)
330s [1] TRUE
330s > 
330s > if ("GML" %in% st_drivers()$name) {
330s +   gml = system.file("gml/fmi_test.gml", package = "sf")
330s +   print(dim(st_read(gml, quiet = TRUE, use_stream = FALSE)))
330s +   gml = system.file("gml/20170930_OB_530964_UKSH.xml.gz", package = "sf")
330s +   print(dim(st_read(gml, layer = "Parcely", quiet = TRUE, use_stream = FALSE)))
330s +   print(dim(st_read(gml, layer = "Parcely", int64_as_string=TRUE, quiet = TRUE, use_stream = FALSE)))
330s + }
330s [1] 22 11
330s [1] 644  25
330s [1] 644  25
330s > 
330s > # logical:
330s > if ("GPKG" %in% st_drivers()$name) {
330s + 	tst = read_sf(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) # default layer name
330s + 	tst$bool = tst$NWBIR79 > 800 # logical
330s + 	tst$bool[1:3] = NA
330s + 	write_sf(tst, "tst__.gpkg")
330s + 	tst2 = read_sf("tst__.gpkg")
330s + 	stopifnot(identical(tst$bool, tst2$bool))
330s + }
330s Warning messages:
330s 1: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
330s   GDAL Message 1: Field with same name (identifier) already exists in (PointTimeSeriesObservation). Skipping newer ones
330s 2: In CPL_read_ogr(dsn, layer, query, as.character(options), quiet,  :
330s   GDAL Message 1: Field with same name (name) already exists in (PointTimeSeriesObservation). Skipping newer ones
331s > 
331s > # spatial filter:
331s > nc = read_sf(system.file("gpkg/nc.gpkg", package="sf"))
331s > wkt = st_as_text(st_geometry(nc[1,]))
331s > wkt
331s [1] "MULTIPOLYGON (((-81.47276 36.23436, -81.54084 36.27251, -81.56198 36.27359, -81.63306 36.34069, -81.74107 36.39178, -81.69828 36.47178, -81.7028 36.51934, -81.67 36.58965, -81.3453 36.57286, -81.34754 36.53791, -81.32478 36.51368, -81.31332 36.4807, -81.26624 36.43721, -81.26284 36.40504, -81.24069 36.37942, -81.23989 36.36536, -81.26424 36.35241, -81.32899 36.3635, -81.36137 36.35316, -81.36569 36.33905, -81.35413 36.29972, -81.36745 36.2787, -81.40639 36.28505, -81.41233 36.26729, -81.43104 36.26072, -81.45289 36.23959, -81.47276 36.23436)))"
331s > nc_filtered = read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = wkt)
331s > try(read_sf(system.file("gpkg/nc.gpkg", package="sf"), wkt_filter = "wrong"))
331s Cannot create geometry from: wrong
331s Error : wkt parse error.
331s 
331s > nc_filtered$NAME
331s [1] "Watauga"   "Ashe"      "Wilkes"    "Alleghany"
331s > 
331s BEGIN TEST roundtrip.R
331s 
331s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
331s Copyright (C) 2024 The R Foundation for Statistical Computing
331s Platform: arm-unknown-linux-gnueabihf (32-bit)
331s 
331s R is free software and comes with ABSOLUTELY NO WARRANTY.
331s You are welcome to redistribute it under certain conditions.
331s Type 'license()' or 'licence()' for distribution details.
331s 
331s R is a collaborative project with many contributors.
331s Type 'contributors()' for more information and
331s 'citation()' on how to cite R or R packages in publications.
331s 
331s Type 'demo()' for some demos, 'help()' for on-line help, or
331s 'help.start()' for an HTML browser interface to help.
331s Type 'q()' to quit R.
331s 
331s > #library(rgdal2)
331s > #openOGRLayer("PG:dbname=postgis" , "meuse2")
331s > 
331s > suppressPackageStartupMessages(library(sf))
331s > options(rgdal_show_exportToProj4_warnings = "none")
331s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
331s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
331s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
331s > pol1 = list(outer, hole1, hole2)
331s > pol2 = list(outer + 12, hole1 + 12)
331s > pol3 = list(outer + 24)
331s > mp = list(pol1,pol2,pol3)
331s > mp1 = st_multipolygon(mp)
331s > sf = st_sf(a=1, st_sfc(mp1))
331s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE))) {
331s +  a = as(sf, "Spatial")
331s +  print(class(a))
331s +  b = st_as_sf(a)
331s +  a2 = as(a, "SpatialPolygonsDataFrame")
331s +  print(all.equal(a, a2)) # round-trip
331s + 
331s +  b1 = as(a, "sf")
331s +  print(all.equal(b, b1))
331s +  b = st_as_sfc(a)
331s +  b1 = as(a, "sfc")
331s +  print(all.equal(b, b1))
331s + }
331s [1] "SpatialPolygonsDataFrame"
331s attr(,"package")
331s [1] "sp"
331s [1] TRUE
331s [1] TRUE
331s [1] TRUE
331s > 
331s > # SpatialMultiPoints
331s > if (require(sp, quietly = TRUE)) {
331s + suppressWarnings(RNGversion("3.5.3"))
331s + set.seed(1331)
331s + # example(SpatialMultiPoints, ask = FALSE, echo = FALSE) # loads mpdf
331s + cl1 = cbind(rnorm(3, 10), rnorm(3, 10))
331s + cl2 = cbind(rnorm(5, 10), rnorm(5,  0))
331s + cl3 = cbind(rnorm(7,  0), rnorm(7, 10))
331s + mpdf = SpatialMultiPointsDataFrame(list(a=cl1, b=cl2, c=cl3), data.frame(a = 1:3, row.names=c("a", "b", "c")))
331s + m = st_as_sf(mpdf)
331s + all.equal(as(m, "Spatial"), mpdf) # TRUE
331s + 
331s + demo(meuse, ask = FALSE, echo = FALSE)
331s + #meuse = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
331s + pol.grd = as(meuse.grid, "SpatialPolygonsDataFrame")
331s + #meuse.grd = spTransform(meuse.grid, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
331s + #pol.grd = spTransform(pol.grd, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
331s + #meuse.area = spTransform(meuse.area, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
331s + #meuse.riv = spTransform(meuse.riv, CRS("+proj=longlat +ellps=WGS84 +no_defs"))
331s + #summary(st_as_sf(meuse))
331s + #summary(st_as_sf(meuse.grd))
331s + #x <- st_as_sf(meuse.grid) # don't print: CRS variations.
331s + #summary(st_as_sf(meuse.area))
331s + #summary(st_as_sf(meuse.riv))
331s + #summary(st_as_sf(as(meuse.riv, "SpatialLines")))
331s + #summary(st_as_sf(pol.grd))
331s + #summary(st_as_sf(as(pol.grd, "SpatialLinesDataFrame")))
331s + 
331s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), "nc.gpkg", quiet = TRUE)
331s + all.equal(nc, st_as_sf(as(nc, "Spatial")))
331s + st_crs(nc) == st_crs(st_as_sf(as(nc, "Spatial")))
331s + 
331s + detach("package:sp")
331s + }
332s > 
332s BEGIN TEST sample.R
332s 
332s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
332s Copyright (C) 2024 The R Foundation for Statistical Computing
332s Platform: arm-unknown-linux-gnueabihf (32-bit)
332s 
332s R is free software and comes with ABSOLUTELY NO WARRANTY.
332s You are welcome to redistribute it under certain conditions.
332s Type 'license()' or 'licence()' for distribution details.
332s 
332s R is a collaborative project with many contributors.
332s Type 'contributors()' for more information and
332s 'citation()' on how to cite R or R packages in publications.
332s 
332s Type 'demo()' for some demos, 'help()' for on-line help, or
332s 'help.start()' for an HTML browser interface to help.
332s Type 'q()' to quit R.
332s 
332s > suppressPackageStartupMessages(library(sf))
333s > bb = st_bbox(c(xmin=0, ymin=1, xmax=3, ymax=2))
333s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons")
333s > plot(xx, border = 'green', main = "pointy topped")
333s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points")
333s > plot(x, add = TRUE)
333s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners")
333s > plot(x, col = 'orange', add = TRUE)
333s > plot(st_as_sfc(bb), add = TRUE, border = 'red')
333s > st_overlaps(xx) %>% 
333s + 	lengths() %>% 
333s + 	sum()
333s [1] 0
333s > 
333s > st_as_sfc(bb) %>%
333s + 	st_difference(st_union(xx)) %>%
333s + 	st_area()
333s numeric(0)
333s > 
333s > xx <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "polygons", flat_topped = TRUE)
333s > plot(xx, border = 'green', main = "flat topped")
333s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "points", flat_topped = TRUE)
333s > plot(x, add = TRUE)
333s > x <- st_make_grid(st_as_sfc(bb), square = FALSE, what = "corners", flat_topped = TRUE)
333s > plot(x, col = 'orange', add = TRUE)
333s > plot(st_as_sfc(bb), add = TRUE, border = 'red')
333s > st_overlaps(xx) %>% 
333s + 	lengths() %>% 
333s + 	sum()
333s [1] 0
333s > 
333s > st_as_sfc(bb) %>%
333s + 	st_difference(st_union(xx)) %>%
333s + 	st_area()
333s numeric(0)
333s > 
333s BEGIN TEST sfc.R
333s 
333s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
333s Copyright (C) 2024 The R Foundation for Statistical Computing
333s Platform: arm-unknown-linux-gnueabihf (32-bit)
333s 
333s R is free software and comes with ABSOLUTELY NO WARRANTY.
333s You are welcome to redistribute it under certain conditions.
333s Type 'license()' or 'licence()' for distribution details.
333s 
333s R is a collaborative project with many contributors.
333s Type 'contributors()' for more information and
333s 'citation()' on how to cite R or R packages in publications.
333s 
333s Type 'demo()' for some demos, 'help()' for on-line help, or
333s 'help.start()' for an HTML browser interface to help.
333s Type 'q()' to quit R.
333s 
333s > suppressPackageStartupMessages(library(sf))
333s > 
333s > p = st_point(c(1/3,1/6))
333s > st_sfc(p, precision = 1000)
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
333s CRS:           NA
333s Precision:     1000 
333s > st_as_sfc(st_as_binary(st_sfc(p, precision = 0L)))
333s POINT (0.3333333 0.1666667)
333s POINT (0.3333333 0.1666667)
333s POINT (0.333 0.167)
333s POINT (0.333333 0.166667)
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
333s CRS:           NA
333s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000)))
333s POINT (0.3 0.2)
333s POINT (0.3333333 0.1666667)
333s POINT (0 0)
333s POINT (1 1)
333s POINT (0 0)
333s POINT (1 1)
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.333 ymin: 0.167 xmax: 0.333 ymax: 0.167
333s CRS:           NA
333s > st_as_sfc(st_as_binary(st_sfc(p, precision = 1000000)))
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.333333 ymin: 0.166667 xmax: 0.333333 ymax: 0.166667
333s CRS:           NA
333s > st_as_sfc(st_as_binary(st_sfc(p, precision = 10L)))
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.3 ymin: 0.2 xmax: 0.3 ymax: 0.2
333s CRS:           NA
333s > st_as_sfc(st_as_binary(st_sfc(p, precision = -1)))
333s Geometry set for 1 feature 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0.3333333 ymin: 0.1666667 xmax: 0.3333333 ymax: 0.1666667
333s CRS:           NA
333s > 
333s > d = data.frame(a = 1:2)
333s > d$geom = c("POINT(0 0)", "POINT(1 1)")
333s > 
333s > st_as_sf(d, wkt = "geom")
333s Simple feature collection with 2 features and 1 field
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s   a        geom
333s 1 1 POINT (0 0)
333s 2 2 POINT (1 1)
333s > st_as_sf(d, wkt = 2)
333s Simple feature collection with 2 features and 1 field
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s   a        geom
333s 1 1 POINT (0 0)
333s 2 2 POINT (1 1)
333s > st_as_sf(d, wkt = "geom", remove = FALSE)
333s Simple feature collection with 2 features and 2 fields
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s   a       geom    geometry
333s 1 1 POINT(0 0) POINT (0 0)
333s 2 2 POINT(1 1) POINT (1 1)
333s > 
333s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)"))
333s Geometry set for 2 features 
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"))
333s Geometry set for 3 features 
333s Geometry type: GEOMETRY
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s > st_as_sfc(character(0))
333s Geometry set for 0 features 
333s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
333s CRS:           NA
333s > x = st_as_sfc(character(0), 4326)
333s > y = st_as_sfc(character(0), crs = 4326)
333s > all.equal(x, y)
333s [1] TRUE
333s > st_as_sfc(c("POINT(0 0)", "POINT(1 1)", "POLYGON((0 0,1 1,0 1,0 0))"),
333s + 	"+proj=longlat +datum=WGS84")
333s Geometry set for 3 features 
333s Geometry type: GEOMETRY
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s Geodetic CRS:  +proj=longlat +datum=WGS84
333s > dg = st_as_sf(d, wkt = "geom")
333s > print(dg, n = 1)
333s Simple feature collection with 2 features and 1 field
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
333s CRS:           NA
333s First 1 features:
333s   a        geom
333s 1 1 POINT (0 0)
333s > head(st_as_sf(d, wkt = "geom"), 1)
333s Simple feature collection with 1 feature and 1 field
333s Geometry type: POINT
333s Dimension:     XY
333s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 0
333s CRS:           NA
333s   a        geom
333s 1 1 POINT (0 0)
333s > 
333s > d$geom = st_as_sfc(d$geom)
333s > d1 = d
333s > attr(d1, "sf_col") = "geom"
333s > st_geometry(d1) = d$geom
333s > 
333s > d$geometry = d$geom # second geometry list-column
333s > if (require(testthat, quietly = TRUE)) {
333s +  expect_warning(st_geometry(d) <- d$geom)
333s + }
333s POLYGON ((0 0, 1 1, 0 1, 0 0))
333s POINT (0 0)
333s POINT (1 1)
333s POLYGON ((0 0, 1 1, 0 1, 0 0))
334s > d
334s Simple feature collection with 2 features and 1 field
334s Active geometry column: geom
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
334s CRS:           NA
334s   a        geom    geometry
334s 1 1 POINT (0 0) POINT (0 0)
334s 2 2 POINT (1 1) POINT (1 1)
334s > 
334s > x = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326)
334s > # don't warn when replacing crs with identical value:
334s > st_sfc(x, crs = 4326)
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s POINT (0 1)
334s POINT (0 1)
334s Geodetic CRS:  WGS 84
334s > y = st_sfc(x, crs = "+proj=longlat +datum=WGS84 +no_defs")
334s Warning message:
334s st_crs<- : replacing crs does not reproject data; use st_transform for that 
334s MULTIPOINT ((0 1))
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(mp, "POINT") : point from first coordinate only
334s MULTIPOINT ((0 1), (2 2))
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(x[[1]], to, ...) : point from first coordinate only
334s MULTIPOINT ((0 1), (2 2))
334s MULTIPOINT ((0 1))
334s Warning message:
334s In st_cast.GEOMETRYCOLLECTION(st_geometrycollection(list(p, mp)),  :
334s   only first part of geometrycollection is retained
334s POINT (0 1)
334s > # but do when it changes:
334s > y = st_sfc(x, crs = 3857)
334s > 
334s > p = st_point(0:1)
334s > st_cast(p, "MULTIPOINT")
334s > mp = st_multipoint(rbind(c(0,1), c(2,2)))
334s > st_cast(mp, "POINT")
334s > st_cast(mp, "MULTIPOINT")
334s > 
334s > # geometry collection to its elements:
334s > st_cast(st_geometrycollection(list(mp)), "POINT")
334s > st_cast(st_geometrycollection(list(mp)), "MULTIPOINT")
334s > st_cast(st_geometrycollection(list(p,mp)), "MULTIPOINT")
334s > 
334s > mp = st_multipoint(rbind(c(0,1)))
334s > x = st_sfc(p, mp)
334s > st_cast(x, "POINT")
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > 
334s > sf = st_sf(a = 3:2, geom = x)
334s > st_cast(sf, "POINT")
334s Simple feature collection with 2 features and 1 field
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s   a        geom
334s 1 3 POINT (0 1)
334s 2 2 POINT (0 1)
334s > 
334s > 
334s > x %>% st_cast("POINT")
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > 
334s > # points:
334s > mp = st_multipoint(rbind(c(0,1))) # single-point multipoint
334s > st_sfc(p,mp) %>% st_cast("POINT")
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > st_sfc(p,mp) %>% st_cast("MULTIPOINT")
334s Geometry set for 2 features 
334s Geometry type: MULTIPOINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > 
334s > # lines:
334s > pts = rbind(c(0,0), c(1,1), c(2,1))
334s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("LINESTRING")
334s Geometry set for 2 features 
334s Geometry type: LINESTRING
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 1
334s CRS:           NA
334s > st_sfc(st_linestring(pts), st_multilinestring(list(pts))) %>% st_cast("MULTILINESTRING")
334s Geometry set for 2 features 
334s Geometry type: MULTILINESTRING
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 1
334s CRS:           NA
334s > 
334s > # polygons:
334s > pts = rbind(c(0,0), c(1,1), c(0,1), c(0,0))
334s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("POLYGON")
334s Geometry set for 2 features 
334s Geometry type: POLYGON
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
334s CRS:           NA
334s > st_sfc(st_polygon(list(pts)), st_multipolygon(list(list(pts)))) %>% st_cast("MULTIPOLYGON")
334s Geometry set for 2 features 
334s Geometry type: MULTIPOLYGON
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
334s CRS:           NA
334s > 
334s > 
334s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>% st_cast()
334s Geometry set for 2 features 
334s Geometry type: GEOMETRY
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > st_sfc(st_geometrycollection(list(p)), st_geometrycollection(list(mp))) %>%
334s + 	st_cast() %>%
334s + 	st_cast("POINT")
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > 
334s > p = rbind(c(0,0),c(1,0),c(1,1),c(0,1),c(0,0))
334s > pol = st_polygon(list(p))
334s > # plot(pol)
334s > try(plot(st_polygonize(pol))) # --> breaks
334s > st_length(st_sfc(st_point(c(0,0))))
334s [1] 0
334s > 
334s > try(as(st_sfc(st_linestring(matrix(1:9,3))), "Spatial"))
334s > 
334s > # check conus is present:
334s > x = st_sfc(st_point(c(-90,35)), st_point(c(-80,36)),
334s + 	crs = "+proj=longlat +datum=NAD27")
334s > y = st_transform(x, 3857)
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
334s Warning message:
334s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
334s POINT (0 1)
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
334s POINT (0 1)
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
334s MULTIPOINT ((0 1))
334s MULTIPOINT ((0 1))
334s LINESTRING (0 0, 1 1, 2 1)
334s LINESTRING (0 0, 1 1, 2 1)
334s MULTILINESTRING ((0 0, 1 1, 2 1))
334s MULTILINESTRING ((0 0, 1 1, 2 1))
334s POLYGON ((0 0, 1 1, 0 1, 0 0))
334s POLYGON ((0 0, 1 1, 0 1, 0 0))
334s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0)))
334s MULTIPOLYGON (((0 0, 1 1, 0 1, 0 0)))
334s POINT (0 1)
334s MULTIPOINT ((0 1))
334s POINT (0 1)
334s POINT (0 1)
334s Warning message:
334s In st_cast.MULTIPOINT(X[[i]], ...) : point from first coordinate only
334s Error in st_polygonize.sfc(st_sfc(x)) : 
334s   inherits(x, "sfc_LINESTRING") || inherits(x, "sfc_MULTILINESTRING") is not TRUE
334s Error in StopZ(zm) : 
334s   sp supports Z dimension only for POINT and MULTIPOINT.
334s use `st_zm(...)` to coerce to XY dimensions
334s LINESTRING (0 0, 0 2)
334s LINESTRING (-2 -2, -2 -1)
334s > 
334s > sf_extSoftVersion()[1:3]
334s     GEOS     GDAL   proj.4 
334s "3.12.1"  "3.8.5"  "9.4.0" 
334s > 
334s > # Ops.sfc:
334s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))))
334s > ls * 2
334s Geometry set for 1 feature 
334s Geometry type: LINESTRING
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 2
334s CRS:           NA
334s > ls - 2
334s Geometry set for 1 feature 
334s Geometry type: LINESTRING
334s Dimension:     XY
334s Bounding box:  xmin: -2 ymin: -2 xmax: -2 ymax: -1
334s CRS:           NA
334s LINESTRING (2 2, 2 0)
334s > (ls + 2) %% 3
334s Geometry set for 1 feature 
334s Geometry type: LINESTRING
334s Dimension:     XY
334s Bounding box:  GEOMETRYCOLLECTION EMPTY
334s xmin: 2 ymin: 0 xmax: 2 ymax: 2
334s CRS:           NA
334s > ls / ls
334s POINT (0 1)
334s POINT (0 1)
334s LINESTRING (0 0, 0 1)
334s POINT (0 1)
334s Geometry set for 1 feature  (with 1 geometry empty)
334s Geometry type: GEOMETRYCOLLECTION
334s Dimension:     XY
334s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NA
334s CRS:           NA
334s > p_ = st_point(0:1)
334s > ll = st_sfc(ls[[1]], p_)
334s > ll & st_sfc(p_)
334s Geometry set for 2 features 
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
334s CRS:           NA
334s > ll | st_sfc(p_)
334s LINESTRING (0 0, 0 1)
334s GEOMETRYCOLLECTION EMPTY
334s Geometry set for 2 features 
334s Geometry type: GEOMETRY
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 1
334s CRS:           NA
334s > ll %/% st_sfc(p_)
334s Geometry set for 2 features  (with 1 geometry empty)
334s Geometry type: GEOMETRY
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 0 ymax: 1
334s CRS:           NA
334s > ll == st_sfc(p_)
334s [1] FALSE  TRUE
334s > ll != st_sfc(p_)
334s [1]  TRUE FALSE
334s > 
334s > 
334s > str(x)
334s sfc_POINT of length 2; first list element:  'XY' num [1:2] -90 35
334s > nc = st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE)
334s > str(nc)
334s Classes 'sf' and 'data.frame':	100 obs. of  15 variables:
334s  $ AREA     : num  0.114 0.061 0.143 0.07 0.153 0.097 0.062 0.091 0.118 0.124 ...
334s  $ PERIMETER: num  1.44 1.23 1.63 2.97 2.21 ...
334s  $ CNTY_    : num  1825 1827 1828 1831 1832 ...
334s  $ CNTY_ID  : num  1825 1827 1828 1831 1832 ...
334s  $ NAME     : chr  "Ashe" "Alleghany" "Surry" "Currituck" ...
334s  $ FIPS     : chr  "37009" "37005" "37171" "37053" ...
334s  $ FIPSNO   : num  37009 37005 37171 37053 37131 ...
334s  $ CRESS_ID : int  5 3 86 27 66 46 15 37 93 85 ...
334s  $ BIR74    : num  1091 487 3188 508 1421 ...
334s  $ SID74    : num  1 0 5 1 9 7 0 0 4 1 ...
334s  $ NWBIR74  : num  10 10 208 123 1066 ...
334s  $ BIR79    : num  1364 542 3616 830 1606 ...
334s  $ SID79    : num  0 3 6 2 3 5 2 2 2 5 ...
334s  $ NWBIR79  : num  19 12 260 145 1197 ...
334s  $ geometry :sfc_MULTIPOLYGON of length 100; first list element: List of 1
334s   ..$ :List of 1
334s   .. ..$ : num [1:27, 1:2] -81.5 -81.5 -81.6 -81.6 -81.7 ...
334s   ..- attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg"
334s  - attr(*, "sf_column")= chr "geometry"
334s  - attr(*, "agr")= Factor w/ 3 levels "constant","aggregate",..: NA NA NA NA NA NA NA NA NA NA ...
334s   ..- attr(*, "names")= chr [1:14] "AREA" "PERIMETER" "CNTY_" "CNTY_ID" ...
334s > bb = st_as_sfc(st_bbox(nc))
334s > format(st_bbox(nc))
334s [1] "((-84.32385,33.88199),(-75.45698,36.58965))"
334s > 
334s > st_agr("constant")
334s [1] constant
334s Levels: constant aggregate identity
334s > st_agr()
334s [1] <NA>
334s Levels: constant aggregate identity
334s > x <- st_sf(a = 1:2, b = 3:4, geom = x, agr = c("constant", "aggregate"))
334s > y <- x %>% st_set_agr("constant")
334s > y
334s Simple feature collection with 2 features and 2 fields
334s Attribute-geometry relationships: constant (2)
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: -90 ymin: 35 xmax: -80 ymax: 36
334s Geodetic CRS:  +proj=longlat +datum=NAD27
334s   a b           geom
334s 1 1 3 POINT (-90 35)
334s 2 2 4 POINT (-80 36)
334s > 
334s > sf1 <- st_sf(a = c("x", "y"), geom = st_sfc(st_point(3:4), st_point(3:4)))
334s > sf1[names(sf1)]
334s Error in `$.bbox`(bb, foo) : unsupported name
334s Simple feature collection with 2 features and 1 field
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 3 ymin: 4 xmax: 3 ymax: 4
334s CRS:           NA
334s   a        geom
334s 1 x POINT (3 4)
334s 2 y POINT (3 4)
334s > 
334s > st_bbox(sf1)
334s xmin ymin xmax ymax 
334s    3    4    3    4 
334s > bb = st_bbox(nc)
334s > bb
334s      xmin      ymin      xmax      ymax 
334s -84.32385  33.88199 -75.45698  36.58965 
334s > st_crs(bb)
334s Coordinate Reference System:
334s   User input: NAD27 
334s   wkt:
334s GEOGCRS["NAD27",
334s     DATUM["North American Datum 1927",
334s         ELLIPSOID["Clarke 1866",6378206.4,294.978698213898,
334s             LENGTHUNIT["metre",1]]],
334s     PRIMEM["Greenwich",0,
334s         ANGLEUNIT["degree",0.0174532925199433]],
334s     CS[ellipsoidal,2],
334s         AXIS["latitude",north,
334s             ORDER[1],
334s             ANGLEUNIT["degree",0.0174532925199433]],
334s         AXIS["longitude",east,
334s             ORDER[2],
334s             ANGLEUNIT["degree",0.0174532925199433]],
334s     ID["EPSG",4267]]
334s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = st_crs(4326))
334s xmin ymin xmax ymax 
334s 16.1 48.6 16.6 47.9 
334s > st_bbox(c(xmin = 16.1, xmax = 16.6, ymin = 48.6, ymax = 47.9), crs = 4326)
334s xmin ymin xmax ymax 
334s 16.1 48.6 16.6 47.9 
334s > 
334s > bb$xrange
334s      xmin      xmax 
334s -84.32385 -75.45698 
334s > bb$yrange
334s     ymin     ymax 
334s 33.88199 36.58965 
334s > bb$xmin
334s      xmin 
334s -84.32385 
334s > bb$ymin
334s     ymin 
334s 33.88199 
334s > bb$xmax
334s      xmax 
334s -75.45698 
334s > bb$ymax
334s     ymax 
334s 36.58965 
334s > try(bb$foo)
334s > 
334s > # merge:
334s > a = data.frame(a = 1:3, b = 5:7)
334s > st_geometry(a) = st_sfc(st_point(c(0,0)), st_point(c(1,1)), st_point(c(2,2)))
334s > b = data.frame(x = c("a", "b", "c"), b = c(2,5,6))
334s > merge(a, b)
334s Simple feature collection with 2 features and 3 fields
334s Geometry type: POINT
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
334s CRS:           NA
334s   b a x    geometry
334s 1 5 1 b POINT (0 0)
334s 2 6 2 c POINT (1 1)
334s > merge(a, b, all = TRUE)
334s Simple feature collection with 4 features and 3 fields (with 1 geometry empty)
334s Geometry type: GEOMETRY
334s Dimension:     XY
334s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 2
334s CRS:           NA
334s   b  a    x                 geometry
334s 1 2 NA    a GEOMETRYCOLLECTION EMPTY
334s 2 5  1    b              POINT (0 0)
334s 3 6  2    c              POINT (1 1)
334s 4 7  3 <NA>              POINT (2 2)
334s > 
334s > if (require(dplyr, quietly = TRUE)) {
334s + # joins:
334s + inner_join(a, b)
334s + left_join(a, b)
334s + right_join(a, b)
334s + full_join(a, b)
334s + semi_join(a, b)
334s + anti_join(a, b)
334s + left_join(a, data.frame(b, geometry = 1), by = "b")
334s + }
335s 
335s Attaching package: 'dplyr'
335s 
335s The following object is masked from 'package:testthat':
335s 
335s     matches
335s 
335s The following objects are masked from 'package:stats':
335s 
335s     filter, lag
335s 
335s The following objects are masked from 'package:base':
335s 
335s     intersect, setdiff, setequal, union
335s 
335s Joining with `by = join_by(b)`
335s Joining with `by = join_by(b)`
335s Joining with `by = join_by(b)`
335s Joining with `by = join_by(b)`
335s Joining with `by = join_by(b)`
335s Joining with `by = join_by(b)`
335s Simple feature collection with 3 features and 4 fields
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 0 ymin: 0 xmax: 2 ymax: 2
335s CRS:           NA
335s   a b    x geometry.y  geometry.x
335s 1 1 5    b          1 POINT (0 0)
335s 2 2 6    c          1 POINT (1 1)
335s 3 3 7 <NA>         NA POINT (2 2)
335s > 
335s > # st_joins:
335s > a = st_sf(a = 1:3,
335s +  geom = st_sfc(st_point(c(1,1)), st_point(c(2,2)), st_point(c(3,3))))
335s > b = st_sf(a = 11:14,
335s +  geom = st_sfc(st_point(c(10,10)), st_point(c(2,2)), st_point(c(2,2)), st_point(c(3,3))))
335s > st_join(a, b)
335s Simple feature collection with 4 features and 2 fields
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 1 ymin: 1 xmax: 3 ymax: 3
335s CRS:           NA
335s     a.x a.y        geom
335s 1     1  NA POINT (1 1)
335s 2     2  12 POINT (2 2)
335s 2.1   2  13 POINT (2 2)
335s 3     3  14 POINT (3 3)
335s > st_join(a, b, left = FALSE)
335s Simple feature collection with 3 features and 2 fields
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 2 ymin: 2 xmax: 3 ymax: 3
335s CRS:           NA
335s     a.x a.y        geom
335s 2     2  12 POINT (2 2)
335s 2.1   2  13 POINT (2 2)
335s 3     3  14 POINT (3 3)
335s > # st_join, largest = TRUE:
335s > nc <- st_transform(st_read(system.file("shape/nc.shp", package="sf"), quiet = TRUE), 2264)
335s > gr = st_sf(
335s +     label = apply(expand.grid(1:10, LETTERS[10:1])[,2:1], 1, paste0, collapse = " "),
335s + 	geom = st_make_grid(st_as_sfc(st_bbox(nc))))
335s > gr$col = sf.colors(10, categorical = TRUE, alpha = .3)
335s > # cut, to check, NA's work out:
335s > gr = gr[-(1:30),]
335s > st_join(nc, gr, largest = TRUE)
335s Simple feature collection with 100 features and 16 fields
335s Geometry type: MULTIPOLYGON
335s Dimension:     XY
335s Bounding box:  xmin: 406265 ymin: 48359.7 xmax: 3052877 ymax: 1044143
335s Projected CRS: NAD83 / North Carolina (ftUS)
335s First 10 features:
335s     AREA PERIMETER CNTY_ CNTY_ID        NAME  FIPS FIPSNO CRESS_ID BIR74 SID74
335s 1  0.114     1.442  1825    1825        Ashe 37009  37009        5  1091     1
335s 2  0.061     1.231  1827    1827   Alleghany 37005  37005        3   487     0
335s 3  0.143     1.630  1828    1828       Surry 37171  37171       86  3188     5
335s 4  0.070     2.968  1831    1831   Currituck 37053  37053       27   508     1
335s 5  0.153     2.206  1832    1832 Northampton 37131  37131       66  1421     9
335s 6  0.097     1.670  1833    1833    Hertford 37091  37091       46  1452     7
335s 7  0.062     1.547  1834    1834      Camden 37029  37029       15   286     0
335s 8  0.091     1.284  1835    1835       Gates 37073  37073Warning message:
335s attribute variables are assumed to be spatially constant throughout all geometries 
335s        37   420     0
335s 9  0.118     1.421  1836    1836      Warren 37185  37185       93   968     4
335s 10 0.124     1.428  1837    1837      Stokes 37169  37169       85  1612     1
335s    NWBIR74 BIR79 SID79 NWBIR79 label       col                       geometry
335s 1       10  1364     0      19  A  4 #fb80724d MULTIPOLYGON (((1270813 913...
335s 2       10   542     3      12  A  4 #fb80724d MULTIPOLYGON (((1340553 959...
335s 3      208  3616     6     260  A  5 #80b1d34d MULTIPOLYGON (((1570586 910...
335s 4      123   830     2     145  A 10 #bc80bd4d MULTIPOLYGON (((2881206 948...
335s 5     1066  1606     3    1197  A  8 #fccde54d MULTIPOLYGON (((2525700 911...
335s 6      954  1838     5    1237  A  9 #d9d9d94d MULTIPOLYGON (((2665112 911...
335s 7      115   350     2     139  A 10 #bc80bd4d MULTIPOLYGON (((2881206 948...
335s 8      254   594     2     371  A  9 #d9d9d94d MULTIPOLYGON (((2717988 951...
335s 9      748  1190     2     844  A  8 #fccde54d MULTIPOLYGON (((2203888 914...
335s 10     160  2038     5     176  A  5 #80b1d34d MULTIPOLYGON (((1697618 911...
335s > 
335s > # rbind:
335s > x = st_sf(a = 1:2, geom = st_sfc(list(st_point(0:1), st_point(0:1)), crs = 4326))
335s > rbind(x, x, x)
335s Simple feature collection with 6 features and 1 field
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
335s Geodetic CRS:  WGS 84
335s   a        geom
335s 1 1 POINT (0 1)
335s 2 2 POINT (0 1)
335s 3 1 POINT (0 1)
335s 4 2 POINT (0 1)
335s 5 1 POINT (0 1)
335s 6 2 POINT (0 1)
335s > nc2 = rbind(nc[1:50, ], nc[51:100, ])
335s > all.equal(nc, nc2)
335s [1] TRUE
335s > 
335s > # st_sample:
335s > suppressWarnings(RNGversion("3.5.3"))
335s > set.seed(131)
335s > options(digits=6)
335s > x = st_sfc(st_polygon(list(rbind(c(0,1),c(90,1),c(90,90),c(0,90),c(0,1)))), crs = st_crs(4326))
335s >   (p <- st_sample(x, 10))
335s POINT (18.5793 25.2416)
335s POINT (11.2448 20.8596)
335s POINT (26.3946 60.1703)
335s POINT (33.8202 19.146)
335s POINT (76.1712 32.1029)
335s Geometry set for 10 features 
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 11.2448 ymin: 3.16385 xmax: 82.3451 ymax: 60.1703
335s Geodetic CRS:  WGS 84
335s First 5 geometries:
335s >   p <- st_sample(x[[1]], 10) # sfg method
335s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat:
335s > p <- st_sample(x, 10)
335s > x = st_sfc(st_polygon(list(rbind(c(-180,-90),c(180,-90),c(180,90),c(-180,90),c(-180,-90)))),
335s +  crs=st_crs(4326))
335s > #FIXME:
335s > # if (sf_extSoftVersion()[["proj.4"]] >= "4.9.0") # lwgeom breaks on this
335s > #   (p <- st_sample(x, 10))
335s > pt = st_multipoint(matrix(1:20,,2))
335s > st_sample(p, 3)
335s Geometry set for 1 feature 
335s Geometry type: MULTIPOINT
335s Dimension:     XY
335s Bounding box:  xmin: 41.0557 ymin: 27.8024 xmax: 80.9558 ymax: 65.5424
335s CRS:           NA
335s > try(st_sample(p, 3.3))
335s Geometry set for 1 feature 
335s Geometry type: MULTIPOINT
335s Dimension:     XY
335s Bounding box:  xmin: 19.3415 ymin: 9.17624 xmax: 80.9558 ymax: 65.5424
335s CRS:           NA
335s > ls = st_sfc(st_linestring(rbind(c(0,0),c(0,1))),
335s +  st_linestring(rbind(c(0,0),c(.1,0))),
335s + MULTIPOINT ((57.2118 52.329), (80.9558 65.5424)...
335s MULTIPOINT ((19.3415 18.6622), (57.1389 9.17624...
335s Warning message:
335s In st_sample.sfc(p, 3.3) : size is not an integer
335s  st_linestring(rbind(c(0,1),c(.1,1))),
335s +  st_linestring(rbind(c(2,2),c(2,2.00001))))
335s > st_sample(ls, 80)
335s Geometry set for 4 features  (with 1 geometry empty)
335s Geometry type: MULTIPOINT
335s Dimension:     XY
335s Bounding box:  xmin: 0 ymin: 0 xmax: 0.0914728 ymax: 1
335s CRS:           NA
335s MULTIPOINT ((0 0.137868), (0 0.777635), (0 0.40...
335s MULTIPOINT ((0.0914728 0), (0.073852 0), (0.003...
335s MULTIPOINT ((0.0488222 1), (0.0716508 1), (0.08...
335s > st_sample(nc[1:2,], size = c(10,20))
335s MULTIPOINT EMPTY
335s Geometry set for 30 features 
335s Geometry type: POINT
335s Dimension:     XY
335s Bounding box:  xmin: 1216510 ymin: 935852 xmax: 1428880 ymax: 1031490
335s Projected CRS: NAD83 / North Carolina (ftUS)
335s First 5 geometries:
335s POINT (1264558 935852)
335s POINT (1256623 949369)
335s POINT (1222665 972624)
335s POINT (1333528 968263)
335s POINT (1310837 958630)
335s > # try with LINES, LongLat, should generate a warning:
335s > nc[1:2,] %>% st_transform(4326) %>% st_cast("MULTILINESTRING") %>% st_sample(size = c(10,20))
335s although coordinates are longitude/latitude, st_sample assumes that they are
335s planar
335s although coordinates are longitude/latitude, st_sample assumes that they are
335s planar
335s Geometry set for 2 features 
335s Geometry type: MULTIPOINT
335s Dimension:     XY
335s Bounding box:  xmin: -81.6893 ymin: 36.2491 xmax: -80.914 ymax: 36.5726
335s MULTIPOINT ((-81.2401 36.3717), (-81.6893 36.36...
335s Geodetic CRS:  WGS 84
335s MULTIPOINT ((-81.2629 36.4076), (-81.1375 36.56...
335s > st_sample(ls, 80, type = "regular")
335s Geometry set for 4 features  (with 1 geometry empty)
335s Geometry type: MULTIPOINT
335s Dimension:     XY
335s Bounding box:  xmin: 0 ymin: 0 xmax: 0.095454 ymax: 1
335s CRS:           NA
335s MULTIPOINT ((0 0.0104441), (0 0.0254442), (0 0....
335s MULTIPOINT ((0.000452334 0), (0.0154525 0), (0....
335s MULTIPOINT ((0.00545321 1), (0.0204533 1), (0.0...
335s MULTIPOINT EMPTY
335s > p_sample = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = FALSE))
336s > lengths(p_sample)
336s  [1] 104 106 110  96  98 120  87 105 104  99
336s > p_sample_exact = lapply(1:10, function(i) st_sample(nc[i, ], 100, exact = TRUE))
336s > lengths(p_sample_exact)
336s  [1] 100 100 100 100 100 100 100 100 100 100
336s > #plot(nc$geometry[1])
336s > #plot(p_sample[[1]], add = TRUE)
336s > #plot(p_sample_exact[[1]], add = TRUE)
336s > 
336s > if (require(dplyr, quietly = TRUE)) {
336s +  #class(st_bind_cols(nc, as.data.frame(nc)[1:3]))
336s +  print(class(dplyr::bind_cols(nc, as.data.frame(nc)[1:3])))
336s + }
337s New names:
337s * `AREA` -> `AREA...1`
337s * `PERIMETER` -> `PERIMETER...2`
337s * `CNTY_` -> `CNTY_...3`
337s * `AREA` -> `AREA...16`
337s * `PERIMETER` -> `PERIMETER...17`
337s * `CNTY_` -> `CNTY_...18`
337s [1] "sf"         "data.frame"
337s > class(rbind(nc, nc))
337s [1] "sf"         "data.frame"
337s > class(cbind(nc, nc))
337s [1] "sf"         "data.frame"
337s > 
337s > x = st_sfc(st_point(0:1), st_point(2:3))
337s > x[c(NA,1,NA,2,NA)]
337s Geometry set for 5 features  (with 3 geometries empty)
337s Geometry type: POINT
337s Dimension:     XY
337s Bounding box:  xmin: 0 ymin: 1 xmax: 2 ymax: 3
337s CRS:           NA
337s POINT EMPTY
337s POINT (0 1)
337s POINT EMPTY
337s POINT (2 3)
337s POINT EMPTY
337s > 
337s > # jitter
337s > pts = st_centroid(st_geometry(nc))
337s > plot(pts)
337s > plot(st_jitter(pts, .05), add = TRUE, col = 'red')
337s > plot(st_geometry(nc))
337s > plot(st_jitter(st_geometry(nc), factor = .01), add = TRUE, col = '#ff8888')
337s > st_jitter(st_sfc(st_point(0:1)), amount = .1)
337s POINT (-0.0500922 0.992953)
337s Geometry set for 1 feature 
337s Geometry type: POINT
337s Dimension:     XY
337s Bounding box:  xmin: -0.0500922 ymin: 0.992953 xmax: -0.0500922 ymax: 0.992953
337s CRS:           NA
337s > 
337s > # st_bbox:
337s > if (suppressPackageStartupMessages(require(sp, quietly = TRUE)) && require(raster, quietly = TRUE)) {
337s + demo(meuse, ask = FALSE, echo = FALSE)
337s + suppressWarnings(st_bbox(meuse))
337s + crs = suppressWarnings(st_crs(meuse))
337s + suppressWarnings(st_bbox(raster(meuse.grid)))
337s + st_bbox(extent(raster()))
337s + }
338s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatCategories" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatDataFrame" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatFactor" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatGraph" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatMessages" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
338s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatOptions" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRaster" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRasterCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatRasterStack" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatSRS" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatTime_v" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatVector" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
339s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
340s code for methods in class "Rcpp_SpatVectorCollection" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
340s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
340s code for methods in class "Rcpp_SpatVectorProxy" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpExtent" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPoly" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPolyPart" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s code for methods in class "Rcpp_SpPolygons" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
341s 
341s Attaching package: 'raster'
341s 
341s The following object is masked from 'package:dplyr':
341s 
341s     select
341s 
342s xmin ymin xmax ymax 
342s -180  -90  180   90 
342s > 
342s > # st_to_s2
342s > if (FALSE) { # stops working with GDAL 2.3.0 / PROJ 5.0.1:
342s +  x = sf:::st_to_s2(nc)
342s +  x1 = st_geometry(x)
342s +  cc = st_coordinates(x1)
342s +  summary(sqrt(cc[,1]^2+cc[,2]^2+cc[,3]^2))
342s + }
342s > 
342s > # check_ring_dir
342s > m = rbind(c(0,0), c(0,1), c(1,1), c(1,0), c(0,0))
342s > mi = m[nrow(m):1,]
342s > pol = st_polygon(list(m * 10, m + .5, mi + 1.5, mi + 3.5, m + 5, mi + 6.5))
342s > st_sfc(pol)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
342s CRS:           NA
342s POLYGON ((0 0, 0 10, 10 10, 10 0, 0 0), (0.5 0....
342s > x = st_sfc(pol, check_ring_dir=TRUE)
342s Error in check_ring_dir(lst) : 
342s   check_ring_dir: not supported for class sfc_GEOMETRY
342s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (...
342s MULTIPOLYGON (((0 0, 10 0, 10 10, 0 10, 0 0), (...
342s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0))
342s MULTILINESTRING ((-179 0, -180 0), (180 0, 179 0))
342s > y = st_sf(a = 1, geom = st_sfc(pol), check_ring_dir=TRUE)
342s > str(x)
342s sfc_POLYGON of length 1; first list element: List of 6
342s  $ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
342s  $ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
342s  $ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
342s  $ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
342s  $ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
342s  $ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
342s  - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
342s > x = st_sfc(st_polygon(), st_polygon(), check_ring_dir=TRUE)
342s > str(x)
342s sfc_POLYGON of length 2; first list element:  list()
342s  - attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
342s > # empty ring/zero area:
342s > x = st_sfc(st_polygon(list(m[c(1,3,1),])), check_ring_dir=TRUE)
342s > 
342s > mp = st_multipolygon(list(pol, pol))
342s > try(x <- st_sfc(mp, st_polygon(), check_ring_dir=TRUE))
342s > x <- st_sfc(mp, pol) %>% st_cast("MULTIPOLYGON") %>% st_sfc(check_ring_dir=TRUE)
342s > x
342s Geometry set for 2 features 
342s Geometry type: MULTIPOLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 10 ymax: 10
342s CRS:           NA
342s > str(x)
342s sfc_MULTIPOLYGON of length 2; first list element: List of 2
342s  $ :List of 6
342s   ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
342s   ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
342s   ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
342s   ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
342s   ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
342s   ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
342s   ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
342s  $ :List of 6
342s   ..$ : num [1:5, 1:2] 0 10 10 0 0 0 0 10 10 0
342s   ..$ : num [1:5, 1:2] 0.5 0.5 1.5 1.5 0.5 0.5 1.5 1.5 0.5 0.5
342s   ..$ : num [1:5, 1:2] 1.5 1.5 2.5 2.5 1.5 1.5 2.5 2.5 1.5 1.5
342s   ..$ : num [1:5, 1:2] 3.5 3.5 4.5 4.5 3.5 3.5 4.5 4.5 3.5 3.5
342s   ..$ : num [1:5, 1:2] 5 5 6 6 5 5 6 6 5 5
342s   ..$ : num [1:5, 1:2] 6.5 6.5 7.5 7.5 6.5 6.5 7.5 7.5 6.5 6.5
342s   ..- attr(*, "class")= chr [1:3] "XY" "POLYGON" "sfg"
342s  - attr(*, "class")= chr [1:3] "XY" "MULTIPOLYGON" "sfg"
342s > 
342s > x = st_sfc(st_linestring(rbind(c(-179,0),c(179,0))), crs = 4326)
342s > st_wrap_dateline(st_sf(a = 1, geometry = x))
342s Simple feature collection with 1 feature and 1 field
342s Geometry type: MULTILINESTRING
342s Dimension:     XY
342s Bounding box:  xmin: -180 ymin: 0 xmax: 180 ymax: 0
342s Geodetic CRS:  WGS 84
342s   a                       geometry
342s 1 1 MULTILINESTRING ((-179 0, -...
342s > st_wrap_dateline(x)
342s Geometry set for 1 feature 
342s Geometry type: MULTILINESTRING
342s Dimension:     XY
342s Bounding box:  xmin: -180 ymin: 0 xmax: 180 ymax: 0
342s Geodetic CRS:  WGS 84
342s > st_wrap_dateline(x[[1]])
342s > 
342s > geo <- c("{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68152563269095,36.43764870908927]}",
342s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67408758213843,36.43366018922779]}",
342s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67708346361097,36.44208638659282]}",
342s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.67886661944996,36.44110273135671]}",
342s +          "{\"geodesic\":true,\"type\":\"Point\",\"coordinates\":[-118.68089232041565,36.44173155205561]}")
342s > st_as_sfc(geo, GeoJSON = TRUE)
342s Geometry set for 5 features 
342s Geometry type: POINT
342s Dimension:     XY
342s Bounding box:  xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421
342s POINT (-118.682 36.4376)
342s Geodetic CRS:  WGS 84
342s POINT (-118.674 36.4337)
342s POINT (-118.677 36.4421)
342s POINT (-118.679 36.4411)
342s > st_as_sfc(geo, GeoJSON = TRUE, crs = 4326)
342s POINT (-118.681 36.4417)
342s Geometry set for 5 features 
342s Geometry type: POINT
342s Dimension:     XY
342s Bounding box:  xmin: -118.682 ymin: 36.4337 xmax: -118.674 ymax: 36.4421
342s POINT (-118.682 36.4376)
342s Geodetic CRS:  WGS 84
342s > 
342s > st_as_sfc(st_as_binary(st_sfc(st_point(0:1)))[[1]], crs = 4326)
342s Geometry set for 1 feature 
342s Geometry type: POINT
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
342s POINT (-118.674 36.4337)
342s POINT (-118.677 36.4421)
342s POINT (-118.679 36.4411)
342s POINT (-118.681 36.4417)
342s POINT (0 1)
342s Geodetic CRS:  WGS 84
342s > 
342s > x = nc
342s > x$geom = NULL
342s > class(x)
342s [1] "sf"         "data.frame"
342s > 
342s > st_as_sfc(list(st_point(0:1)), crs = 4326)
342s Geometry set for 1 feature 
342s Geometry type: POINT
342s Dimension:     XY
342s Bounding box:  POINT (0 1)
342s POLYGON ((0.983044 0.0650651, 0.959619 0.040380...
342s POLYGON ((0.983044 0.0650651, 0.959619 0.040380...
342s Warning message:
342s attribute variables are assumed to be spatially constant throughout all geometries 
342s Warning message:
342s attribute variables are assumed to be spatially constant throughout all geometries 
342s xmin: 0 ymin: 1 xmax: 0 ymax: 1
342s Geodetic CRS:  WGS 84
342s > 
342s > # crop:
342s > box = c(xmin = 0, ymin = 0, xmax = 1, ymax = 1)
342s > 
342s > pol = st_sfc(st_buffer(st_point(c(.5, .5)), .65))
342s > pol_sf = st_sf(a=1, geom=pol)
342s > 
342s > st_crop(pol, box)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
342s CRS:           NA
342s > st_crop(pol, st_bbox(box))
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
342s CRS:           NA
342s > st_crop(pol_sf, box)
342s Simple feature collection with 1 feature and 1 field
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
342s CRS:           NA
342s   a                           geom
342s 1 1 POLYGON ((0.983044 0.065065...
342s > st_crop(pol_sf, st_bbox(box))
342s Simple feature collection with 1 feature and 1 field
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 1 ymax: 1
342s CRS:           NA
342s   a                           geom
342s 1 1 POLYGON ((0.983044 0.065065...
342s > 
342s > # new sample methods:
342s > x = st_sfc(st_polygon(list(rbind(c(0,0),c(90,0),c(90,90),c(0,90),c(0,0))))) # NOT long/lat:
342s > p <- st_sample(x, 10, type = "regular")
342s > p <- st_sample(x, 10, type = "hexagonal")
342s > 
342s > all.equal(st_drop_geometry(pol_sf), st_set_geometry(pol_sf, NULL))
342s [1] TRUE
342s > 
342s > # https://github.com/r-spatial/sf/issues/1024
342s > shape1 <-st_sfc(st_polygon(list(rbind(c(0,0), c(1,0), c(3,2), c(2,4), c(1,4), c(0,0)))))
342s > shape2 <- st_sfc(st_polygon())
342s > shape3 <- st_sfc(st_polygon())
342s > 
342s > shape4 = st_intersection(shape2, shape3) # has zero features
342s > 
342s > st_difference(shape1, shape4)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
342s CRS:           NA
342s > st_difference(shape4, shape1)
342s Geometry set for 0 features 
342s Bounding box:  xmin: NA ymin: NA xmax: NA ymax: NAPOLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
342s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
342s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
342s POLYGON ((0 0, 1 0, 3 2, 2 4, 1 4, 0 0))
342s 
342s CRS:           NA
342s > st_sym_difference(shape1, shape4)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
342s CRS:           NA
342s > st_union(shape1, shape4)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
342s CRS:           NA
342s > st_union(shape4, shape1)
342s Geometry set for 1 feature 
342s Geometry type: POLYGON
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 0 xmax: 3 ymax: 4
342s CRS:           NA
342s > 
342s > # transform empty:
342s > tr = st_sf(geom=st_sfc()) %>% st_set_crs(3587) %>% st_transform(4326)
342s > 
342s > # NA values are converted to empty; #1114:
342s > x <- data.frame(name=LETTERS)
342s > y <- data.frame(name=LETTERS[1:13], letters[14:26])
342s > y$geometry <- st_sfc(st_point(c(0,0)))
342s > y <- st_sf(y)
342s > out = merge(x, y, all.x=TRUE)
342s > class(out)
342s [1] "data.frame"
342s > 
342s > st_as_sf(st_sfc(st_point(0:1)))
342s Simple feature collection with 1 feature and 0 fields
342s Geometry type: POINT
342s Dimension:     XY
342s Bounding box:  xmin: 0 ymin: 1 xmax: 0 ymax: 1
342s CRS:           NA
342s             x
342s 1 POINT (0 1)
342s > 
342s BEGIN TEST sfg.R
342s 
342s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
342s Copyright (C) 2024 The R Foundation for Statistical Computing
342s Platform: arm-unknown-linux-gnueabihf (32-bit)
342s 
342s R is free software and comes with ABSOLUTELY NO WARRANTY.
342s You are welcome to redistribute it under certain conditions.
342s Type 'license()' or 'licence()' for distribution details.
342s 
342s R is a collaborative project with many contributors.
342s Type 'contributors()' for more information and
342s 'citation()' on how to cite R or R packages in publications.
342s 
342s Type 'demo()' for some demos, 'help()' for on-line help, or
342s 'help.start()' for an HTML browser interface to help.
342s Type 'q()' to quit R.
342s 
342s > suppressPackageStartupMessages(library(sf))
342s > c(st_point(1:2), st_point(5:6))
342s MULTIPOINT ((1 2), (5 6))
342s MULTIPOINT ((1 2), (5 7), (6 8))
342s MULTIPOINT ((1 3), (2 4), (5 7), (6 8))
342s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16))
342s > c(st_point(1:2), st_multipoint(matrix(5:8,2)))
342s > c(st_multipoint(matrix(1:4,2)), st_multipoint(matrix(5:8,2)))
342s > c(st_linestring(matrix(1:6,3)), st_linestring(matrix(11:16,3)))
342s > c(st_linestring(matrix(1:6,3)), st_multilinestring(list(matrix(11:16,3))))
342s MULTILINESTRING ((11 14, 12 15, 13 16), (1 4, 2 5, 3 6))
342s > c(st_multilinestring(list(matrix(1:6,3))), st_multilinestring(list(matrix(11:16,3))))
342s MULTILINESTRING ((1 4, 2 5, 3 6), (11 14, 12 15, 13 16))
342s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0)))
342s > pl = list(rbind(c(0,0), c(1,0), c(1,1), c(0,1), c(0,0)))
342s > c(st_polygon(pl), st_polygon(pl))
342s > c(st_polygon(pl), st_multipolygon(list(pl)))
342s > c(st_linestring(matrix(1:6,3)), st_point(1:2))
342s MULTIPOLYGON (((0 0, 1 0, 1 1, 0 1, 0 0)), ((0 0, 1 0, 1 1, 0 1, 0 0)))
342s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))),
342s +   st_geometrycollection(list(st_multilinestring(list(matrix(11:16,3))))))
342s GEOMETRYCOLLECTION (LINESTRING (1 4, 2 5, 3 6), POINT (1 2))
342s > c(st_geometrycollection(list(st_point(1:2), st_linestring(matrix(1:6,3)))),
342s +   st_multilinestring(list(matrix(11:16,3))), st_point(5:6), 
342s +   st_geometrycollection(list(st_point(10:11))))
342s GEOMETRYCOLLECTION (POINT (1 2), LINESTRING (1 4, 2 5, 3 6), MULTILINESTRING ((11 14, 12 15, 13 16)))
342s > head(st_point(0:1), 2)
342s > 
342s > # Ops.sfg:
342s > ls = st_linestring(rbind(c(0,0),c(0,1)))
342s > pt = st_point(1:0)
342s > ls | pt
342s > ls / pt
342s > ls & pt
342s > ls %/% pt
342s > # arith:
342s > ls + pt
342s > ls - pt
342s > ls * pt
342s > ls / pt
342s > # unary:
342s > +pt
342s > -pt
342s > try(!pt)
342s > 
342s BEGIN TEST spatstat.R
342s GEOMETRYCOLLECTION (MULTILINESTRING ((11 14, 12 15, 13 16)), POINT (5 6), POINT (1 2), LINESTRING (1 4, 2 5, 3 6), POINT (10 11))
342s POINT (0 1)
342s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0))
342s LINESTRING (0 0, 0 1)
342s GEOMETRYCOLLECTION EMPTY
342s GEOMETRYCOLLECTION (LINESTRING (0 0, 0 1), POINT (1 0))
342s LINESTRING (1 0, 1 1)
342s LINESTRING (-1 0, -1 1)
342s LINESTRING (0 0, 0 0)
342s LINESTRING (0 0, 0 1)
342s POINT (1 0)
342s POINT (-1 0)
342s Error in Ops.sfg(pt) : unary ! not defined for "sfg" objects
342s 
342s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
342s Copyright (C) 2024 The R Foundation for Statistical Computing
342s Platform: arm-unknown-linux-gnueabihf (32-bit)
342s 
342s R is free software and comes with ABSOLUTELY NO WARRANTY.
342s You are welcome to redistribute it under certain conditions.
342s Type 'license()' or 'licence()' for distribution details.
342s 
342s R is a collaborative project with many contributors.
342s Type 'contributors()' for more information and
342s 'citation()' on how to cite R or R packages in publications.
342s 
342s Type 'demo()' for some demos, 'help()' for on-line help, or
342s 'help.start()' for an HTML browser interface to help.
342s Type 'q()' to quit R.
342s 
342s > suppressPackageStartupMessages(library(sf))
343s > if (require(spatstat.random, quietly = TRUE)) {
343s + 
343s + data(chicago)
343s + st_as_sf(chicago)
343s + # ppp:
343s + g = gorillas
343s + st_as_sf(g)
343s + marks(g) = NULL
343s + st_as_sf(g)
343s + 
343s + # multipolygon: https://github.com/r-spatial/sf/issues/1161
343s + window = read_sf(system.file("shape/nc.shp", package = "sf")) %>%
343s +   st_transform(32119)
343s + 
343s + win = spatstat.geom::as.owin(window)
343s + 
343s + set.seed(1331)
343s + pp2a = runifpoint(n = 50, win = win)
343s + print(st_as_sf(pp2a))
343s + 
343s + # st_sample going the spatstat way
343s + x <- sf::st_sfc(sf::st_polygon(list(rbind(c(0, 0), c(10, 0), c(10, 10), c(0, 0)))))
343s + try(pts <- st_sample(x, type = "thomas"))
343s + try(pts <- st_sample(x, kappa = 1, mu = 10, type = "Thomas"))
343s + # points expected
343s + set.seed(1331)
343s + pts <- st_sample(x, kappa = 1, mu = 10, scale = 0.1, type = "Thomas")
343s + #plot(x)
343s + #plot(pts, add = TRUE)
343s + pts
343s + 
343s + # see https://github.com/r-spatial/sf/issues/1233
343s + # png("/tmp/spa%03d.png")
343s + 
343s + p1 = st_point(0:1)
343s + p2 = st_point(1:2)
343s + p3 = st_point(c(-1,2))
343s + p = st_sfc(p1, p2, p3)
343s + as.ppp(p)
343s + try(as.ppp(st_set_crs(p, 4326)))
343s + 
343s + sf = st_sf(geom = p)
343s + try(as.ppp(sf))
343s + sf = st_sf(a = 1:3, geom = p)
343s + as.ppp(sf)
343s + sf = st_sf(a = 1:3, b=3:1, geom = p)
343s + as.ppp(sf) # warns
343s + 
343s + w = st_as_sfc(st_bbox(st_sfc(p1, p2)))
343s + sf = st_sf(a = 1:3, geom = p)
343s + (p0 = rbind(st_sf(a = 0, geom = w), sf))
343s + suppressWarnings(try(as.ppp(p0))) # errors: one point outside window
343s + 
343s + w = st_as_sfc(st_bbox(p))
343s + sf = st_sf(a = 1:3, geom = p)
343s + (p0 = rbind(st_sf(a = 0, geom = w), sf))
343s + as.ppp(p0)
343s + 
343s + # as.owin.sf, as.owin.sfc_*
343s + nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), check_ring_dir = TRUE, quiet = TRUE)
343s + try(as.owin(nc)) # should be projected
343s + nc = st_transform(nc, 32119)
343s + plot(as.owin(nc), col = 'grey')
343s + plot(as.owin(st_geometry(nc)), col = 'grey')
343s + 
343s + sq = rbind(c(-1,-1), c(1, -1), c(1,1), c(-1,1), c(-1,-1))
343s + pol = st_polygon(list(0.5 * sq, sq[5:1,] * 0.45)) # w hole
343s + plot(as.owin(pol), col = 'grey')
343s + plot(as.owin(st_sfc(pol)), col = 'grey')
343s + mpol = st_multipolygon(list(
343s + 	list(sq, sq[5:1,] * 0.9),
343s + 	list(sq * 2, sq[5:1,] * 1.8)))
343s + plot(as.owin(mpol), col = 'grey')
343s + plot(as.owin(st_sfc(mpol)), col = 'grey')
343s + plot(as.owin(st_sfc(pol, mpol)), col = 'grey')
343s + plot(as.owin(st_sf(a=1:2, st_sfc(pol, mpol))), col = 'grey')
343s + (o = as.owin(st_sf(a=1:2, st_sfc(pol, mpol))))
343s + st_as_sfc(o)
343s + 
343s + plot(st_as_sfc(o), col = 'blue', main = 'st_as_sfc(o)')
343s + plot(st_as_sf(o), col = 'blue', main = 'st_as_sf(o)')
343s + 
343s + data(japanesepines)
343s + st_as_sf(japanesepines) # warns about multiplier
343s + jp = rescale(japanesepines)
343s + st_as_sf(jp) # No warning
343s + 
343s + data(nztrees)
343s + qNZ <- quadratcount(nztrees, nx=4, ny=3)
343s + ts = as.tess(qNZ)
343s + plot(st_as_sfc(ts))
343s + 
343s + ls = st_linestring(rbind(c(0,0), c(1,1), c(2,0)))
343s + plot(as.psp(ls))
343s + mls = st_multilinestring(list(rbind(c(0,0), c(1,1), c(2,0)), rbind(c(3,3), c(4,2))))
343s + plot(as.psp(mls))
343s + 
343s + plot(as.psp(st_sfc(ls)))
343s + plot(as.psp(st_sfc(mls)))
343s + plot(as.psp(st_sfc(ls, mls)))
343s + 
343s + sf = st_sf(st_cast(st_sfc(ls, mls), "MULTILINESTRING"), marks = 1:2, foo = 2:1)
343s + as.psp(sf) # picks marks itself
343s + as.psp(sf, marks = 5:1)
343s + 
343s + (x = st_as_sf(as.psp(sf)))
343s + (y = st_as_sfc(as.psp(sf)))
343s + all.equal(st_geometry(x), y)
343s + }
344s spatstat.geom 3.2-9
344s spatstat.random 3.2-3
345s Simple feature collection with 51 features and 1 field
345s Geometry type: GEOMETRY
345s Dimension:     XY
345s Bounding box:  xmin: 123829.8 ymin: 14740.06 xmax: 930518.6 ymax: 318255.5
345s CRS:           NA
345s First 10 features:
345s     label                           geom
345s 1  window MULTIPOLYGON (((886135.8 31...
345s 2   point      POINT (339121.1 257811.6)
345s 3   point      POINT (827440.4 246568.3)
345s 4   point      POINT (451339.2 207943.6)
345s 5   point      POINT (268749.7 203323.4)
345s 6   point      POINT (516676.5 198556.1)
345s 7   point        POINT (692366 238643.1)
345s 8   point      POINT (843278.5 287241.6)
345s 9   point      POINT (648477.7 235466.6)
345s 10  point        POINT (852593 267248.3)
345s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
345s   rthomas is not an exported function from spatstat.random.
345s Error in st_poly_sample(x, size = size, ..., type = type, by_polygon = by_polygon,  : 
345s   The spatstat function rThomas did not return a valid result. Consult the help file.
345s Error message from spatstat:
345s Error in spatstat_fun(..., win = spatstat.geom::as.owin(x)) : 
345s   argument "scale" is missing, with no default
345s 
345s Error : Only projected coordinates may be converted to spatstat class objects
345s Error in `marks<-.ppp`(`*tmp*`, value = value) : 
345s   number of rows of data frame != number of points
345s In addition: Warning message:
345s In as.ppp.sf(sf) : only first attribute column is used for marks
345s Error : Only projected coordinates may be converted to spatstat class objects
345s [1] TRUE
345s > 
345s Warning message:
345s In st_as_sfc.owin(spatstat.geom::as.owin(x)) :
345s   The spatstat object has an measurement unit multiplier != 1. Consider rescaling before converting.
345s BEGIN TEST stars.R
345s 
345s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
345s Copyright (C) 2024 The R Foundation for Statistical Computing
345s Platform: arm-unknown-linux-gnueabihf (32-bit)
345s 
345s R is free software and comes with ABSOLUTELY NO WARRANTY.
345s You are welcome to redistribute it under certain conditions.
345s Type 'license()' or 'licence()' for distribution details.
345s 
345s R is a collaborative project with many contributors.
345s Type 'contributors()' for more information and
345s 'citation()' on how to cite R or R packages in publications.
345s 
345s Type 'demo()' for some demos, 'help()' for on-line help, or
345s 'help.start()' for an HTML browser interface to help.
345s Type 'q()' to quit R.
345s 
346s > suppressPackageStartupMessages(library(sf))
346s > 
346s > tif = system.file("tif/geomatrix.tif", package = "sf")
346s > 
346s > gdal_metadata(tif)
346s [1] "AREA_OR_POINT=Point"
346s > gdal_metadata(tif, NA_character_)
346s [1] "IMAGE_STRUCTURE"     "DERIVED_SUBDATASETS" ""                   
346s > try(gdal_metadata(tif, "wrongDomain")) 
346s Error in gdal_metadata(tif, "wrongDomain") : 
346s   domain_item[1] not found in available metadata domains
346s > gdal_metadata(tif, c("IMAGE_STRUCTURE"))
346s $INTERLEAVE
346s [1] "BAND"
346s 
346s attr(,"class")
346s [1] "gdal_metadata"
346s > try(length(gdal_metadata(tif, c("DERIVED_SUBDATASETS")))) # fails on Fedora 26
346s [1] 2
346s > 
346s > if (require(stars, quietly = TRUE)) {
346s +   tif = system.file("tif/geomatrix.tif", package = "sf")
346s +   r = read_stars(tif)
346s +   d = (st_dimensions(r))
346s +   gt =  c(1841001.75, 1.5, -5, 1144003.25, -5, -1.5)
346s +   x1 = st_as_sfc(d, as_points = TRUE, use_cpp = TRUE, geotransform = gt)
346s +   x2 = st_as_sfc(d, as_points = TRUE, use_cpp = FALSE, geotransform = gt)
346s +   print(identical(x1, x2))
346s +   y1 = st_as_sfc(d, as_points = FALSE, use_cpp = TRUE, geotransform = gt)
346s +   y2 = st_as_sfc(d, as_points = FALSE, use_cpp = FALSE, geotransform = gt)
346s +   print(identical(y1, y2))
346s + 
346s +   # rectilinear grid:
346s +   m = matrix(1:20, nrow = 5, ncol = 4)
346s +   x = c(0,0.5,1,2,4,5)
346s +   y = c(0.3,0.5,1,2,2.2)
346s +   r = st_as_stars(list(m = m), dimensions = st_dimensions(x = x, y = y, .raster = c("x", "y")))
346s +   print(st_as_sfc(st_dimensions(r), as_points = TRUE))
346s +   print(st_as_sfc(st_dimensions(r), as_points = FALSE))
346s + 
346s +   # curvilinear grid:
346s +   lon = st_as_stars(matrix(1:5, 4, 5, byrow = TRUE))
346s +   lat = st_as_stars(matrix(1:4, 4, 5))
346s +   ll = c(X1 = lon, X2 = lat)
346s +   curv = st_as_stars(st_as_stars(t(m)), curvilinear = setNames(ll, c("X1", "X2")))
346s +   print(st_as_sfc(st_dimensions(curv), as_points = TRUE))
346s +   print(st_as_sfc(st_dimensions(curv), as_points = FALSE))
346s + 
346s +   demo(nc, echo = FALSE, ask = FALSE)
346s +   print(x <- st_rasterize(nc)) # default grid:
346s +   print(p <- st_as_sf(x, as_points = FALSE)) # polygonize: follow raster boundaries
346s +   print(p <- st_as_sf(x, as_points = FALSE, use_integer = TRUE)) # polygonize integers: follow raster boundaries
346s +   print(try(p <- st_as_sf(x, as_points = TRUE))) # polygonize: contour, requies GDAL >= 2.4.0
346s +   if (utils::packageVersion("stars") >= "0.2-1") {
346s +     write_stars(read_stars(tif), tempfile(fileext = ".tif"))
346s +     write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"))
346s +     write_stars(read_stars(tif, proxy = TRUE), tempfile(fileext = ".tif"), chunk_size = c(200,200))
346s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"))
346s +   	write_stars(na.tif, "na.tif")
346s +   	write_stars(na.tif, "na.tif", NA_value = -999)
346s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999)
346s +   	write_stars(na.tif, "na.tif")
346s +   	write_stars(na.tif, "na.tif", NA_value = -999)
346s +   	na.tif = read_stars(system.file("tif/na.tif", package = "stars"), NA_value = -999, proxy = TRUE)
346s +   	write_stars(na.tif, "na.tif")
346s +   	write_stars(na.tif, "na.tif", NA_value = -999)
346s +   }
346s +   # https://github.com/mtennekes/tmap/issues/368
346s +   if (utils::packageVersion("stars") > "0.4-0") {
346s +     lc = system.file('tif/lc.tif', package = 'stars')
346s +     if (lc != "") {
346s + 	    r = read_stars(lc, RAT = "Land Cover Class")
346s + 	    r <- droplevels(r)
346s +     }
346s +   }
346s + }
346s [1] TRUE
346s POINT (0.25 0.4)
346s POINT (0.75 0.4)
346s POINT (1.5 0.4)
346s POINT (3 0.4)
346s POINT (4.5 0.4)
346s [1] TRUE
346s Geometry set for 20 features 
346s Geometry type: POINT
346s Dimension:     XY
346s Bounding box:  xmin: 0.25 ymin: 0.4 xmax: 4.5 ymax: 2.1
346s CRS:           NA
346s First 5 geometries:
346s POLYGON ((0 0.3, 0.5 0.3, 0.5 0.5, 0 0.5, 0 0.3))
346s Geometry set for 20 features 
346s Geometry type: POLYGON
346s Dimension:     XY
346s Bounding box:  xmin: 0 ymin: 0.3 xmax: 5 ymax: 2.2
346s CRS:           NA
346s First 5 geometries:
346s POLYGON ((0.5 0.3, 1 0.3, 1 0.5, 0.5 0.5, 0.5 0...
346s POLYGON ((1 0.3, 2 0.3, 2 0.5, 1 0.5, 1 0.3))
346s POLYGON ((2 0.3, 4 0.3, 4 0.5, 2 0.5, 2 0.3))
346s POLYGON ((4 0.3, 5 0.3, 5 0.5, 4 0.5, 4 0.3))
346s Geometry set for 20 features 
346s Geometry type: POINT
346s Dimension:     XY
346s Bounding box:  xmin: 1 ymin: 1 xmax: 5 ymax: 4
346s Geodetic CRS:  WGS 84 (CRS84)
346s First 5 geometries:
346s Geometry set for 20 features 
346s Geometry type: POLYGON
346s Dimension:     XY
346s Bounding box:  xmin: 0.5 ymin: 0.5 xmax: 5.5 ymax: 4.5
346s Geodetic CRS:  WGS 84 (CRS84)
346s First 5 geometries:
346s POINT (1 1)
346s POINT (1 2)
346s POINT (1 3)
346s POINT (1 4)
346s POINT (2 1)
346s POLYGON ((0.5 0.5, 0.5 1.5, 1.5 1.5, 1.5 0.5, 0...
346s POLYGON ((0.5 1.5, 0.5 2.5, 1.5 2.5, 1.5 1.5, 0...
346s POLYGON ((0.5 2.5, 0.5 3.5, 1.5 3.5, 1.5 2.5, 0...
346s POLYGON ((0.5 3.5, 0.5 4.5, 1.5 4.5, 1.5 3.5, 0...
346s POLYGON ((1.5 0.5, 1.5 1.5, 2.5 1.5, 2.5 0.5, 1...
347s stars object with 2 dimensions and 12 attributes
347s attribute(s):
347s                 Min.   1st Qu.    Median         Mean   3rd Qu.      Max.  NA's
347s AREA           0.042     0.108     0.142 1.451932e-01     0.181     0.241 30904
347s PERIMETER      0.999     1.461     1.716 1.786110e+00     2.004     3.640 30904
347s CNTY_       1825.000  1907.000  1989.000 1.998403e+03  2085.000  2241.000 30904
347s CNTY_ID     1825.000  1907.000  1989.000 1.998403e+03  2085.000  2241.000 30904
347s FIPSNO     37001.000 37049.000 37101.000 3.710042e+04 37153.000 37199.000 30904
347s CRESS_ID       1.000    25.000    51.000 5.071206e+01    77.000   100.000 30904
347s BIR74        248.000  1323.000  2648.000 3.791637e+03  4139.000 21588.000 30904
347s SID74          0.000     3.000     5.000 7.891985e+00    10.000    44.000 30904
347s NWBIR74        1.000   297.000   844.000 1.246210e+03  1396.000  8027.000 30904
347s BIR79        319.000  1606.000  3108.000 4.852046e+03  5400.000 30757.000 30904
347s SID79          0.000     3.000     6.000 9.584098e+00    13.000    57.000 30904
347s NWBIR79        3.000   360.000  1058.000 1.604642e+03  1524.000 11631.000 30904
347s dimension(s):
347s   from  to offset    delta refsys point x/y
347s x    1 461 -84.32  0.01925  NAD27 FALSE [x]
347s y    1 141  36.59 -0.01925  NAD27 FALSE [y]
347s Simple feature collection with 34097 features and 12 fields
347s Geometry type: POLYGON
347s Dimension:     XY
347s Bounding box:  xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965
347s Geodetic CRS:  NAD27
347s First 10 features:
347s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
347s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
347s    SID79 NWBIR79                       geometry
347s 1      0      19 POLYGON ((-81.66757 36.5896...
347s 2      0      19 POLYGON ((-81.64833 36.5896...
347s 3      0      19 POLYGON ((-81.62908 36.5896...
347s 4      0      19 POLYGON ((-81.60983 36.5896...
347s 5      0      19 POLYGON ((-81.59058 36.5896...
347s 6      0      19 POLYGON ((-81.57133 36.5896...
347s 7      0      19 POLYGON ((-81.55208 36.5896...
347s 8      0      19 POLYGON ((-81.53283 36.5896...
347s 9      0      19 POLYGON ((-81.51359 36.5896...
347s 10     0      19 POLYGON ((-81.49434 36.5896...
348s Simple feature collection with 34097 features and 12 fields
348s Geometry type: POLYGON
348s Dimension:     XY
348s Bounding box:  xmin: -84.32385 ymin: 33.87563 xmax: -75.45034 ymax: 36.58965
348s Geodetic CRS:  NAD27
348s First 10 features:
348s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
348s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s    SID79 NWBIR79                       geometry
348s 1      0      19 POLYGON ((-81.66757 36.5896...
348s 2      0      19 POLYGON ((-81.64833 36.5896...
348s 3      0      19 POLYGON ((-81.62908 36.5896...
348s 4      0      19 POLYGON ((-81.60983 36.5896...
348s 5      0      19 POLYGON ((-81.59058 36.5896...
348s 6      0      19 POLYGON ((-81.57133 36.5896...
348s 7      0      19 POLYGON ((-81.55208 36.5896...
348s 8      0      19 POLYGON ((-81.53283 36.5896...
348s 9      0      19 POLYGON ((-81.51359 36.5896...
348s 10     0      19 POLYGON ((-81.49434 36.5896...
348s Simple feature collection with 34097 features and 12 fields
348s Geometry type: POINT
348s Dimension:     XY
348s Bounding box:  xmin: -84.31423 ymin: 33.88525 xmax: -75.45997 ymax: 36.58003
348s Geodetic CRS:  NAD27
348s First 10 features:
348s     AREA PERIMETER CNTY_ CNTY_ID FIPSNO CRESS_ID BIR74 SID74 NWBIR74 BIR79
348s 1  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 2  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 3  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 4  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 5  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 6  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 7  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 8  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 9  0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s 10 0.114     1.442  1825    1825  37009        5  1091     1      10  1364
348s    SID79 NWBIR79                   geometry
348s 1      0      19 POINT (-81.65795 36.58003)
348s 2      0      19  POINT (-81.6387 36.58003)
348s 3      0      19 POINT (-81.61945 36.58003)
348s 4      0      19  POINT (-81.6002 36.58003)
348s 5      0      19 POINT (-81.58096 36.58003)
348s 6      0      19 POINT (-81.56171 36.58003)
348s 7      0      19 POINT (-81.54246 36.58003)
348s 8      0      19 POINT (-81.52321 36.58003)
348s 9      0      19 POINT (-81.50396 36.58003)
348s 10     0      19 POINT (-81.48471 36.58003)
348s 
348s 
348s 
348s 
348s > 
348s > r = gdal_read(tif)
348s > gt = c(0,1,0,0,0,1)
348s > gdal_inv_geotransform(gt)
348s [1] 0 1 0 0 0 1
348s > rc = expand.grid(x=1:3, y = 1:3)
348s > #(xy = xy_from_colrow(rc, gt))
348s > #xy_from_colrow(xy, gt, inverse = TRUE)
348s > crs <- gdal_crs(tif)
348s > 
348s > try(gdal_metadata("foo"))
348s [1] NA
348s > gdal_metadata(tif)
348s [1] "AREA_OR_POINT=Point"
348s > 
348s BEGIN TEST testthat.R
348s 
348s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
348s Copyright (C) 2024 The R Foundation for Statistical Computing
348s Platform: arm-unknown-linux-gnueabihf (32-bit)
348s 
348s R is free software and comes with ABSOLUTELY NO WARRANTY.
348s You are welcome to redistribute it under certain conditions.
348s Type 'license()' or 'licence()' for distribution details.
348s 
348s R is a collaborative project with many contributors.
348s Type 'contributors()' for more information and
348s 'citation()' on how to cite R or R packages in publications.
348s 
348s Type 'demo()' for some demos, 'help()' for on-line help, or
348s 'help.start()' for an HTML browser interface to help.
348s Type 'q()' to quit R.
348s 
348s > if (require(testthat, quietly = TRUE)) {
348s +  suppressPackageStartupMessages(library(sf))
348s +  test_check("sf")
348s + }
350s Coordinate Reference System:
350s   User input: EPSG:4326 
350s   wkt:
350s GEOGCRS["WGS 84",
350s     ENSEMBLE["World Geodetic System 1984 ensemble",
350s         MEMBER["World Geodetic System 1984 (Transit)"],
350s         MEMBER["World Geodetic System 1984 (G730)"],
350s         MEMBER["World Geodetic System 1984 (G873)"],
350s         MEMBER["World Geodetic System 1984 (G1150)"],
350s         MEMBER["World Geodetic System 1984 (G1674)"],
350s         MEMBER["World Geodetic System 1984 (G1762)"],
350s         MEMBER["World Geodetic System 1984 (G2139)"],
350s         ELLIPSOID["WGS 84",6378137,298.257223563,
350s             LENGTHUNIT["metre",1]],
350s         ENSEMBLEACCURACY[2.0]],
350s     PRIMEM["Greenwich",0,
350s         ANGLEUNIT["degree",0.0174532925199433]],
350s     CS[ellipsoidal,2],
350s         AXIS["geodetic latitude (Lat)",north,
350s             ORDER[1],
350s             ANGLEUNIT["degree",0.0174532925199433]],
350s         AXIS["geodetic longitude (Lon)",east,
350s             ORDER[2],
350s             ANGLEUNIT["degree",0.0174532925199433]],
350s     USAGE[
350s         SCOPE["Horizontal component of 3D system."],
350s         AREA["World."],
350s         BBOX[-90,-180,90,180]],
350s     ID["EPSG",4326]]
350s Coordinate Reference System:
350s   No user input
350s   wkt:
350s GEOGCRS["WGS 84",
350s     ENSEMBLE["World Geodetic System 1984 ensemble",
350s         MEMBER["World Geodetic System 1984 (Transit)"],
350s         MEMBER["World Geodetic System 1984 (G730)"],
350s         MEMBER["World Geodetic System 1984 (G873)"],
350s         MEMBER["World Geodetic System 1984 (G1150)"],
350s         MEMBER["World Geodetic System 1984 (G1674)"],
350s         MEMBER["World Geodetic System 1984 (G1762)"],
350s         MEMBER["World Geodetic System 1984 (G2139)"],
350s         ELLIPSOID["WGS 84",6378137,298.257223563,
350s             LENGTHUNIT["metre",1]],
350s         ENSEMBLEACCURACY[2.0]],
350s     PRIMEM["Greenwich",0,
350s         ANGLEUNIT["degree",0.0174532925199433]],
350s     CS[ellipsoidal,2],
350s         AXIS["geodetic latitude (Lat)",north,
350s             ORDER[1],
350s             ANGLEUNIT["degree",0.0174532925199433]],
350s         AXIS["geodetic longitude (Lon)",east,
350s             ORDER[2],
350s             ANGLEUNIT["degree",0.0174532925199433]],
350s     USAGE[
350s         SCOPE["Horizontal component of 3D system."],
350s         AREA["World."],
350s         BBOX[-90,-180,90,180]],
350s     ID["EPSG",4326]]
356s Cannot open layer foo
356s Reading layer `nospatial' from data source 
356s   `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG'
356s Reading layer `nospatial' from data source 
356s   `/usr/lib/R/site-library/sf/gpkg/nospatial.gpkg' using driver `GPKG'
356s Reading layer `nc' from data source `/usr/lib/R/site-library/sf/shape/nc.shp' using driver `ESRI Shapefile'
356s Simple feature collection with 100 features and 14 fields
356s Geometry type: MULTIPOLYGON
356s Dimension:     XY
356s Bounding box:  xmin: -84.32385 ymin: 33.88199 xmax: -75.45698 ymax: 36.58965
356s Geodetic CRS:  NAD27
357s OGR: Unsupported geometry type
359s Failed to create feature 1 in x
359s Failed to create feature 1 in x
360s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 716 ]
360s 
360s == Skipped tests (20) ==========================================================
360s * On CRAN (1): 'test-gdal.R:101:5'
360s * RPostgres cannot be loaded (3): 'test-postgis_ODBC.R:1:1',
360s   'test-postgis_RPostgreSQL.R:1:1', 'test-postgis_RPostgres.R:12:1'
360s * Sys.getenv("USER") %in% c("edzer", "travis") is not TRUE (3):
360s   'test-gdal.R:55:3', 'test-write.R:47:3', 'test-write.R:130:3'
360s * empty test (7): 'test-crs.R:66:1', 'test-crs.R:99:1',
360s   'test-normalize.R:29:1', 'test-proj.R:1:1', 'test-read.R:7:1',
360s   'test-s2.R:20:1', 'test-sf.R:52:1'
360s * sf_extSoftVersion()[["GDAL"]] < "2.5.0" && sf_extSoftVersion()[["proj.4"]] <
360s   (1): 'test-crs.R:61:3'
360s * sf_extSoftVersion()[["GDAL"]] >= "2.5.0" is TRUE (1): 'test-gdal.R:46:3'
360s * sf_extSoftVersion()[["proj.4"]] >= "6.0.0" is TRUE (3): 'test-crs.R:44:3',
360s   'test-crs.R:49:3', 'test-crs.R:55:3'
360s * sf_use_s2() is TRUE (1): 'test-geos.R:20:5'
360s 
360s [ FAIL 0 | WARN 4 | SKIP 20 | PASS 716 ]
360s > 
360s BEGIN TEST units.R
360s 
360s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
360s Copyright (C) 2024 The R Foundation for Statistical Computing
360s Platform: arm-unknown-linux-gnueabihf (32-bit)
360s 
360s R is free software and comes with ABSOLUTELY NO WARRANTY.
360s You are welcome to redistribute it under certain conditions.
360s Type 'license()' or 'licence()' for distribution details.
360s 
360s R is a collaborative project with many contributors.
360s Type 'contributors()' for more information and
360s 'citation()' on how to cite R or R packages in publications.
360s 
360s Type 'demo()' for some demos, 'help()' for on-line help, or
360s 'help.start()' for an HTML browser interface to help.
360s Type 'q()' to quit R.
360s 
360s > suppressPackageStartupMessages(library(sf))
361s > suppressPackageStartupMessages(library(units))
361s > 
361s > if (utils::packageVersion("units") >= "0.5-0")
361s + 	units_options(auto_convert_names_to_symbols = FALSE)
361s > 
361s > st_crs(4326)$ud_unit
361s 1 [degree]
361s > 
361s > u = names(sf:::udunits_from_proj)[1:21]
361s > 
361s > unrecognized = NULL
361s > out = sapply(u, function(x) { 
361s +   p4s = paste0("+proj=laea +units=", x)
361s +   cat(x, ": ")
361s +   ret = try(st_crs(p4s)$ud_unit, silent = TRUE)
361s +   if (! inherits(ret, "try-error"))
361s +   	print(ret)
361s +   else
361s +     unrecognized = c(unrecognized, x)
361s + })
361s km : 1 [km]
361s m : 1 [m]
361s dm : 1 [dm]
361s cm : 1 [cm]
361s mm : 1 [mm]
361s kmi : 1 [nautical_mile]
361s in : 1 [inch]
361s ft : 1 [foot]
361s yd : 1 [yard]
361s mi : 1 [mi]
361s fath : 1 [fathom]
361s ch : 1 [chain]
361s link : 1 [link]
361s us-in : 1 [us_in]
361s us-ft : 1 [US_survey_foot]
361s us-yd : 1 [US_survey_yard]
361s us-ch : 1 [chain]
361s us-mi : 1 [US_survey_mile]
361s ind-yd : 1 [ind_yd]
361s ind-ft : 1 [ind_ft]
361s ind-ch : 1 [ind_ch]
361s > 
361s > if (length(unrecognized))
361s + 	print(paste("unrecognized units:", paste(unrecognized, collapse = ", "), ": older GDAL version?"))
361s > 
361s BEGIN TEST wkb.R
361s 
361s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
361s Copyright (C) 2024 The R Foundation for Statistical Computing
361s Platform: arm-unknown-linux-gnueabihf (32-bit)
361s 
361s R is free software and comes with ABSOLUTELY NO WARRANTY.
361s You are welcome to redistribute it under certain conditions.
361s Type 'license()' or 'licence()' for distribution details.
361s 
361s R is a collaborative project with many contributors.
361s Type 'contributors()' for more information and
361s 'citation()' on how to cite R or R packages in publications.
361s 
361s Type 'demo()' for some demos, 'help()' for on-line help, or
361s 'help.start()' for an HTML browser interface to help.
361s Type 'q()' to quit R.
361s 
361s > suppressPackageStartupMessages(library(sf))
362s > round_trip = function(x, EWKB = FALSE, pureR = FALSE) {
362s + 	if (inherits(x, "sfg"))
362s + 		x = st_sfc(x)
362s + 	wkb = st_as_binary(x, EWKB = EWKB, pureR = pureR)
362s + 	class(wkb) = "WKB"
362s + 	# print(wkb)
362s + 	y = st_as_sfc(wkb, EWKB = EWKB, pureR = pureR)
362s + 	a = all.equal(x, y)
362s + 	if (length(a) == 1 && is.logical(a) && a)
362s + 		TRUE
362s + 	else {
362s + 		print(x)
362s + 		print(wkb)
362s + 		print(y)
362s + 		FALSE
362s + 	}
362s + }
362s > 
362s > p3 = st_point(c(0,0,0))
362s > p3m = st_point(c(0,0,0), "XYM")
362s > p4 = st_point(c(0,0,0,0))
362s > p2 = st_point(c(0,0))
362s > ls = st_linestring(matrix(1:6,3))
362s > mp = st_multipoint(matrix(1:6,3))
362s > 
362s > outer = matrix(c(0,0,10,0,10,10,0,10,0,0),ncol=2, byrow=TRUE)
362s > hole1 = matrix(c(1,1,1,2,2,2,2,1,1,1),ncol=2, byrow=TRUE)
362s > hole2 = matrix(c(5,5,5,6,6,6,6,5,5,5),ncol=2, byrow=TRUE)
362s > pts = list(outer, hole1, hole2)
362s > pl1 = st_polygon(pts)
362s > 
362s > pol1 = list(outer, hole1, hole2)
362s > pol2 = list(outer + 12, hole1 + 12)
362s > pol3 = list(outer + 24)
362s > mp1 = st_multipolygon(list(pol1,pol2,pol3))
362s > 
362s > ml1 = st_multilinestring(list(outer, hole1, hole2))
362s > gc = st_geometrycollection(list(p2, ls, pl1, mp1))
362s > 
362s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE)
362s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
362s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = FALSE, pureR = TRUE)
362s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
362s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE)
362s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
362s > sapply(list(p3, p3m, p4, p2, ls, mp, pl1, mp1, ml1, gc), round_trip, EWKB = TRUE, pureR = TRUE)
362s  [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE TRUE
362s > 
362s > rawToHex(st_as_binary(st_multipoint(matrix(1:6,3))))
362s [1] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840"
362s > rawToHex(st_as_binary(st_sfc(st_point(c(0,1)), st_multipoint(matrix(1:6,3)))))
362s [1] "01010000000000000000000000000000000000f03f"                                                                                                      
362s [2] "0104000000030000000101000000000000000000f03f0000000000001040010100000000000000000000400000000000001440010100000000000000000008400000000000001840"
362s > try(rawToHex("error"))
362s > 
362s > # debug roundtrips sf -> GDAL -> sf; 
362s > # the first WKT is what GDAL reports, and will lack M
362s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYZ")))))
362s LINESTRING (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18)
362s [1] "LINESTRING Z (1 7 13, 2 8 14, 3 9 15, 4 10 16, 5 11 17, 6 12 18)"
362s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYZ")))))
362s Error in rawToHex("error") : 
362s   not implemented for objects of class character
362s MULTIPOINT (1 7 13,2 8 14,3 9 15,4 10 16,5 11 17,6 12 18)
362s [1] "MULTIPOINT Z ((1 7 13), (2 8 14), (3 9 15), (4 10 16), (5 11 17), (6 12 18))"
362s > st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYZ")))))
362s POINT (0 0 0)
362s [1] "POINT Z (0 0 0)"
362s > 
362s > if (sf:::CPL_gdal_version() >= "2.1.0") { # address GDAL/Fedora (gdal 2.0.2) error:
362s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_linestring(matrix(1:18,6,3),dim="XYM")))))
362s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_multipoint(matrix(1:18,6,3),dim="XYM")))))
362s +   st_as_text(st_sfc(sf:::CPL_roundtrip(st_sfc(st_point(c(0,0,0), dim="XYM")))))
362s + } else {
362s + 	"(output expected when gdal <= 2.1.0, e.g. CRAN/fedora)"
362s + }
362s LINESTRING (1 7,2 8,3 9,4 10,5 11,6 12)
362s MULTIPOINT (1 7,2 8,3 9,4 10,5 11,6 12)
362s POINT (0 0)
362s [1] "POINT M (0 0 0)"
362s > 
362s autopkgtest [08:41:43]: test run-unit-test: -----------------------]
366s autopkgtest [08:41:47]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
366s run-unit-test        PASS
370s autopkgtest [08:41:51]: test pkg-r-autopkgtest: preparing testbed
398s autopkgtest [08:42:19]: testbed dpkg architecture: armhf
400s autopkgtest [08:42:21]: testbed apt version: 2.7.14build2
400s autopkgtest [08:42:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup
408s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB]
408s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3388 B]
408s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [497 kB]
408s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [54.1 kB]
408s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B]
408s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [112 kB]
408s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [432 kB]
408s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1968 B]
408s Fetched 1177 kB in 1s (1471 kB/s)
408s Reading package lists...
424s tee: /proc/self/fd/2: Permission denied
448s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
448s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
448s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
448s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
449s Reading package lists...
449s Reading package lists...
450s Building dependency tree...
450s Reading state information...
450s Calculating upgrade...
451s The following package was automatically installed and is no longer required:
451s   libatm1t64
451s Use 'apt autoremove' to remove it.
451s The following packages will be upgraded:
451s   apt apt-utils bash-completion curl dhcpcd-base dpkg dpkg-dev dracut-install
451s   fwupd gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 groff-base
451s   initramfs-tools initramfs-tools-bin initramfs-tools-core iproute2
451s   klibc-utils libapt-pkg6.0t64 libbsd0 libc-bin libc6 libcurl3t64-gnutls
451s   libcurl4t64 libdpkg-perl libevent-core-2.1-7t64 libfwupd2 libgcc-s1
451s   libgcrypt20 libgirepository-1.0-1 libglib2.0-0t64 libglib2.0-data libklibc
451s   liblocale-gettext-perl liblz4-1 libperl5.38t64 libsqlite3-0 libstdc++6
451s   libuv1t64 libxcb1 locales man-db perl perl-base perl-modules-5.38
451s   python-apt-common python3-apt python3-jinja2 python3-pyparsing python3-six
451s   python3-typing-extensions rsync tzdata vim-common vim-tiny xxd
451s 56 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
451s Need to get 37.3 MB of archives.
451s After this operation, 545 kB of additional disk space will be used.
451s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14.1.0-1ubuntu1 [48.4 kB]
451s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14.1.0-1ubuntu1 [41.5 kB]
451s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14.1.0-1ubuntu1 [714 kB]
451s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libc6 armhf 2.39-0ubuntu8.1 [2828 kB]
451s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libgcrypt20 armhf 1.10.3-3 [454 kB]
451s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf liblz4-1 armhf 1.9.4-2 [58.0 kB]
451s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libapt-pkg6.0t64 armhf 2.9.3 [1013 kB]
451s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg armhf 1.22.6ubuntu10 [1230 kB]
452s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libperl5.38t64 armhf 5.38.2-4 [4102 kB]
452s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf perl armhf 5.38.2-4 [231 kB]
452s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf perl-base armhf 5.38.2-4 [1671 kB]
452s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf perl-modules-5.38 all 5.38.2-4 [3110 kB]
452s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libc-bin armhf 2.39-0ubuntu8.1 [530 kB]
452s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf apt armhf 2.9.3 [1397 kB]
452s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf apt-utils armhf 2.9.3 [217 kB]
452s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf liblocale-gettext-perl armhf 1.07-7 [14.8 kB]
452s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf rsync armhf 3.3.0-1 [414 kB]
452s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf dhcpcd-base armhf 1:10.0.6-5 [186 kB]
452s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf gir1.2-girepository-2.0 armhf 1.80.1-3 [24.7 kB]
452s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf gir1.2-glib-2.0 armhf 2.80.2-1ubuntu1 [182 kB]
452s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf libglib2.0-0t64 armhf 2.80.2-1ubuntu1 [1421 kB]
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452s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libglib2.0-data all 2.80.2-1ubuntu1 [49.3 kB]
452s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf libsqlite3-0 armhf 3.45.3-1 [601 kB]
452s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf locales all 2.39-0ubuntu8.1 [4234 kB]
452s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf python-apt-common all 2.9.0 [20.1 kB]
452s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf python3-apt armhf 2.9.0 [162 kB]
452s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf tzdata all 2024a-4ubuntu1 [274 kB]
452s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf vim-tiny armhf 2:9.1.0377-1ubuntu1 [670 kB]
452s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf vim-common all 2:9.1.0377-1ubuntu1 [385 kB]
452s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf xxd armhf 2:9.1.0377-1ubuntu1 [63.0 kB]
452s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf bash-completion all 1:2.14.0-1 [206 kB]
452s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf groff-base armhf 1.23.0-4 [946 kB]
452s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf libuv1t64 armhf 1.48.0-4 [83.2 kB]
452s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb1 armhf 1.17.0-2 [46.3 kB]
452s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf man-db armhf 2.12.1-1 [1201 kB]
452s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf curl armhf 8.5.0-2ubuntu10.1 [219 kB]
452s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libcurl4t64 armhf 8.5.0-2ubuntu10.1 [296 kB]
452s Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf dpkg-dev all 1.22.6ubuntu10 [1074 kB]
452s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libdpkg-perl all 1.22.6ubuntu10 [269 kB]
452s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf dracut-install armhf 060+5-8ubuntu1 [34.3 kB]
452s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libcurl3t64-gnutls armhf 8.5.0-2ubuntu10.1 [290 kB]
452s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf libfwupd2 armhf 1.9.20-1 [126 kB]
452s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf fwupd armhf 1.9.20-1 [4368 kB]
452s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools all 0.142ubuntu27 [7898 B]
452s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools-core all 0.142ubuntu27 [49.5 kB]
452s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf initramfs-tools-bin armhf 0.142ubuntu27 [20.9 kB]
452s Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf klibc-utils armhf 2.0.13-4ubuntu1 [93.8 kB]
452s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf libklibc armhf 2.0.13-4ubuntu1 [45.0 kB]
452s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-core-2.1-7t64 armhf 2.1.12-stable-10 [82.5 kB]
452s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf python3-jinja2 all 3.1.3-1 [107 kB]
452s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf python3-pyparsing all 3.1.2-1 [86.4 kB]
452s Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf python3-six all 1.16.0-6 [13.0 kB]
452s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf python3-typing-extensions all 4.11.0-1 [61.5 kB]
453s Preconfiguring packages ...
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455s Preparing to unpack .../liblz4-1_1.9.4-2_armhf.deb ...
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455s Setting up liblz4-1:armhf (1.9.4-2) ...
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455s Preparing to unpack .../libapt-pkg6.0t64_2.9.3_armhf.deb ...
455s Unpacking libapt-pkg6.0t64:armhf (2.9.3) over (2.7.14build2) ...
455s Setting up libapt-pkg6.0t64:armhf (2.9.3) ...
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455s Preparing to unpack .../dpkg_1.22.6ubuntu10_armhf.deb ...
455s Unpacking dpkg (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
455s Setting up dpkg (1.22.6ubuntu10) ...
456s (Reading database ... 
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456s Preparing to unpack .../libperl5.38t64_5.38.2-4_armhf.deb ...
456s Unpacking libperl5.38t64:armhf (5.38.2-4) over (5.38.2-3.2build2) ...
456s Preparing to unpack .../perl_5.38.2-4_armhf.deb ...
456s Unpacking perl (5.38.2-4) over (5.38.2-3.2build2) ...
457s Preparing to unpack .../perl-base_5.38.2-4_armhf.deb ...
457s Unpacking perl-base (5.38.2-4) over (5.38.2-3.2build2) ...
457s Setting up perl-base (5.38.2-4) ...
457s (Reading database ... 
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457s Preparing to unpack .../perl-modules-5.38_5.38.2-4_all.deb ...
457s Unpacking perl-modules-5.38 (5.38.2-4) over (5.38.2-3.2build2) ...
458s Preparing to unpack .../libc-bin_2.39-0ubuntu8.1_armhf.deb ...
458s Unpacking libc-bin (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
458s Setting up libc-bin (2.39-0ubuntu8.1) ...
459s (Reading database ... 
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459s Preparing to unpack .../archives/apt_2.9.3_armhf.deb ...
459s Unpacking apt (2.9.3) over (2.7.14build2) ...
459s Setting up apt (2.9.3) ...
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459s Preparing to unpack .../00-apt-utils_2.9.3_armhf.deb ...
459s Unpacking apt-utils (2.9.3) over (2.7.14build2) ...
460s Preparing to unpack .../01-liblocale-gettext-perl_1.07-7_armhf.deb ...
460s Unpacking liblocale-gettext-perl (1.07-7) over (1.07-6ubuntu5) ...
460s Preparing to unpack .../02-rsync_3.3.0-1_armhf.deb ...
460s Unpacking rsync (3.3.0-1) over (3.2.7-1ubuntu1) ...
460s Preparing to unpack .../03-dhcpcd-base_1%3a10.0.6-5_armhf.deb ...
460s Unpacking dhcpcd-base (1:10.0.6-5) over (1:10.0.6-4) ...
460s Preparing to unpack .../04-gir1.2-girepository-2.0_1.80.1-3_armhf.deb ...
460s Unpacking gir1.2-girepository-2.0:armhf (1.80.1-3) over (1.80.1-1) ...
460s Preparing to unpack .../05-gir1.2-glib-2.0_2.80.2-1ubuntu1_armhf.deb ...
460s Unpacking gir1.2-glib-2.0:armhf (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
460s Preparing to unpack .../06-libglib2.0-0t64_2.80.2-1ubuntu1_armhf.deb ...
460s Unpacking libglib2.0-0t64:armhf (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
460s Preparing to unpack .../07-libgirepository-1.0-1_1.80.1-3_armhf.deb ...
460s Unpacking libgirepository-1.0-1:armhf (1.80.1-3) over (1.80.1-1) ...
460s Preparing to unpack .../08-iproute2_6.9.0-1_armhf.deb ...
460s Unpacking iproute2 (6.9.0-1) over (6.1.0-1ubuntu6) ...
461s dpkg: warning: unable to delete old directory '/etc/iproute2/rt_tables.d': Directory not empty
461s dpkg: warning: unable to delete old directory '/etc/iproute2/rt_protos.d': Directory not empty
461s dpkg: warning: unable to delete old directory '/etc/iproute2': Directory not empty
461s Preparing to unpack .../09-libbsd0_0.12.2-1_armhf.deb ...
461s Unpacking libbsd0:armhf (0.12.2-1) over (0.12.1-1build1) ...
461s Preparing to unpack .../10-libglib2.0-data_2.80.2-1ubuntu1_all.deb ...
461s Unpacking libglib2.0-data (2.80.2-1ubuntu1) over (2.80.1-0ubuntu2) ...
461s Preparing to unpack .../11-libsqlite3-0_3.45.3-1_armhf.deb ...
461s Unpacking libsqlite3-0:armhf (3.45.3-1) over (3.45.1-1ubuntu2) ...
461s Preparing to unpack .../12-locales_2.39-0ubuntu8.1_all.deb ...
461s Unpacking locales (2.39-0ubuntu8.1) over (2.39-0ubuntu8) ...
462s Preparing to unpack .../13-python-apt-common_2.9.0_all.deb ...
462s Unpacking python-apt-common (2.9.0) over (2.7.7ubuntu1) ...
462s Preparing to unpack .../14-python3-apt_2.9.0_armhf.deb ...
462s Unpacking python3-apt (2.9.0) over (2.7.7ubuntu1) ...
462s Preparing to unpack .../15-tzdata_2024a-4ubuntu1_all.deb ...
462s Unpacking tzdata (2024a-4ubuntu1) over (2024a-2ubuntu1) ...
462s Preparing to unpack .../16-vim-tiny_2%3a9.1.0377-1ubuntu1_armhf.deb ...
462s Unpacking vim-tiny (2:9.1.0377-1ubuntu1) over (2:9.1.0016-1ubuntu7) ...
462s Preparing to unpack .../17-vim-common_2%3a9.1.0377-1ubuntu1_all.deb ...
462s Unpacking vim-common (2:9.1.0377-1ubuntu1) over (2:9.1.0016-1ubuntu7) ...
462s Preparing to unpack .../18-xxd_2%3a9.1.0377-1ubuntu1_armhf.deb ...
462s Unpacking xxd (2:9.1.0377-1ubuntu1) over (2:9.1.0016-1ubuntu7) ...
462s Preparing to unpack .../19-bash-completion_1%3a2.14.0-1_all.deb ...
462s Unpacking bash-completion (1:2.14.0-1) over (1:2.11-8) ...
463s Preparing to unpack .../20-groff-base_1.23.0-4_armhf.deb ...
463s Unpacking groff-base (1.23.0-4) over (1.23.0-3build2) ...
463s Preparing to unpack .../21-libuv1t64_1.48.0-4_armhf.deb ...
463s Unpacking libuv1t64:armhf (1.48.0-4) over (1.48.0-1.1build1) ...
463s Preparing to unpack .../22-libxcb1_1.17.0-2_armhf.deb ...
463s Unpacking libxcb1:armhf (1.17.0-2) over (1.17.0-1) ...
463s Preparing to unpack .../23-man-db_2.12.1-1_armhf.deb ...
463s Unpacking man-db (2.12.1-1) over (2.12.0-4build2) ...
463s Preparing to unpack .../24-curl_8.5.0-2ubuntu10.1_armhf.deb ...
463s Unpacking curl (8.5.0-2ubuntu10.1) over (8.5.0-2ubuntu10) ...
463s Preparing to unpack .../25-libcurl4t64_8.5.0-2ubuntu10.1_armhf.deb ...
463s Unpacking libcurl4t64:armhf (8.5.0-2ubuntu10.1) over (8.5.0-2ubuntu10) ...
463s Preparing to unpack .../26-dpkg-dev_1.22.6ubuntu10_all.deb ...
463s Unpacking dpkg-dev (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
463s Preparing to unpack .../27-libdpkg-perl_1.22.6ubuntu10_all.deb ...
463s Unpacking libdpkg-perl (1.22.6ubuntu10) over (1.22.6ubuntu6) ...
463s Preparing to unpack .../28-dracut-install_060+5-8ubuntu1_armhf.deb ...
463s Unpacking dracut-install (060+5-8ubuntu1) over (060+5-1ubuntu3) ...
463s Preparing to unpack .../29-libcurl3t64-gnutls_8.5.0-2ubuntu10.1_armhf.deb ...
463s Unpacking libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10.1) over (8.5.0-2ubuntu10) ...
463s Preparing to unpack .../30-libfwupd2_1.9.20-1_armhf.deb ...
463s Unpacking libfwupd2:armhf (1.9.20-1) over (1.9.19-1) ...
463s Preparing to unpack .../31-fwupd_1.9.20-1_armhf.deb ...
463s Unpacking fwupd (1.9.20-1) over (1.9.19-1) ...
463s Preparing to unpack .../32-initramfs-tools_0.142ubuntu27_all.deb ...
463s Unpacking initramfs-tools (0.142ubuntu27) over (0.142ubuntu25) ...
464s Preparing to unpack .../33-initramfs-tools-core_0.142ubuntu27_all.deb ...
464s Unpacking initramfs-tools-core (0.142ubuntu27) over (0.142ubuntu25) ...
464s Preparing to unpack .../34-initramfs-tools-bin_0.142ubuntu27_armhf.deb ...
464s Unpacking initramfs-tools-bin (0.142ubuntu27) over (0.142ubuntu25) ...
464s Preparing to unpack .../35-klibc-utils_2.0.13-4ubuntu1_armhf.deb ...
464s Unpacking klibc-utils (2.0.13-4ubuntu1) over (2.0.13-4) ...
464s Preparing to unpack .../36-libklibc_2.0.13-4ubuntu1_armhf.deb ...
464s Unpacking libklibc:armhf (2.0.13-4ubuntu1) over (2.0.13-4) ...
464s Preparing to unpack .../37-libevent-core-2.1-7t64_2.1.12-stable-10_armhf.deb ...
464s Unpacking libevent-core-2.1-7t64:armhf (2.1.12-stable-10) over (2.1.12-stable-9ubuntu2) ...
464s Preparing to unpack .../38-python3-jinja2_3.1.3-1_all.deb ...
464s Unpacking python3-jinja2 (3.1.3-1) over (3.1.2-1ubuntu1) ...
464s Preparing to unpack .../39-python3-pyparsing_3.1.2-1_all.deb ...
464s Unpacking python3-pyparsing (3.1.2-1) over (3.1.1-1) ...
464s Preparing to unpack .../40-python3-six_1.16.0-6_all.deb ...
464s Unpacking python3-six (1.16.0-6) over (1.16.0-4) ...
464s Preparing to unpack .../41-python3-typing-extensions_4.11.0-1_all.deb ...
464s Unpacking python3-typing-extensions (4.11.0-1) over (4.10.0-1) ...
464s Setting up libxcb1:armhf (1.17.0-2) ...
464s Setting up apt-utils (2.9.3) ...
464s Setting up libcurl4t64:armhf (8.5.0-2ubuntu10.1) ...
464s Setting up iproute2 (6.9.0-1) ...
464s Removing obsolete conffile /etc/iproute2/group ...
464s Removing obsolete conffile /etc/iproute2/rt_realms ...
464s Removing obsolete conffile /etc/iproute2/rt_scopes ...
464s Removing obsolete conffile /etc/iproute2/rt_tables ...
464s Removing obsolete conffile /etc/iproute2/rt_tables.d/README ...
464s Removing obsolete conffile /etc/iproute2/rt_protos.d/README ...
464s Removing obsolete conffile /etc/iproute2/rt_protos ...
464s Removing obsolete conffile /etc/iproute2/rt_dsfield ...
464s Removing obsolete conffile /etc/iproute2/nl_protos ...
464s Removing obsolete conffile /etc/iproute2/ematch_map ...
464s Removing obsolete conffile /etc/iproute2/bpf_pinning ...
464s Setting up libsqlite3-0:armhf (3.45.3-1) ...
464s Setting up libuv1t64:armhf (1.48.0-4) ...
464s Setting up libcurl3t64-gnutls:armhf (8.5.0-2ubuntu10.1) ...
464s Setting up locales (2.39-0ubuntu8.1) ...
465s Generating locales (this might take a while)...
467s   en_US.UTF-8... done
467s Generation complete.
467s Setting up xxd (2:9.1.0377-1ubuntu1) ...
467s Setting up tzdata (2024a-4ubuntu1) ...
467s 
467s Current default time zone: 'Etc/UTC'
467s Local time is now:      Fri May 24 08:43:28 UTC 2024.
467s Universal Time is now:  Fri May 24 08:43:28 UTC 2024.
467s Run 'dpkg-reconfigure tzdata' if you wish to change it.
467s 
467s Setting up python3-six (1.16.0-6) ...
467s Setting up libklibc:armhf (2.0.13-4ubuntu1) ...
467s Setting up python3-jinja2 (3.1.3-1) ...
467s Setting up libglib2.0-0t64:armhf (2.80.2-1ubuntu1) ...
467s No schema files found: doing nothing.
467s Setting up libglib2.0-data (2.80.2-1ubuntu1) ...
467s Setting up vim-common (2:9.1.0377-1ubuntu1) ...
467s Setting up python3-pyparsing (3.1.2-1) ...
468s Setting up bash-completion (1:2.14.0-1) ...
468s Installing new version of config file /etc/profile.d/bash_completion.sh ...
468s Setting up perl-modules-5.38 (5.38.2-4) ...
468s Setting up dhcpcd-base (1:10.0.6-5) ...
468s Setting up python3-typing-extensions (4.11.0-1) ...
468s Setting up gir1.2-glib-2.0:armhf (2.80.2-1ubuntu1) ...
468s Setting up python-apt-common (2.9.0) ...
468s Setting up dracut-install (060+5-8ubuntu1) ...
468s Setting up groff-base (1.23.0-4) ...
468s Setting up libgirepository-1.0-1:armhf (1.80.1-3) ...
468s Setting up libevent-core-2.1-7t64:armhf (2.1.12-stable-10) ...
468s Setting up curl (8.5.0-2ubuntu10.1) ...
468s Setting up libperl5.38t64:armhf (5.38.2-4) ...
468s Setting up klibc-utils (2.0.13-4ubuntu1) ...
468s Setting up libbsd0:armhf (0.12.2-1) ...
468s Setting up liblocale-gettext-perl (1.07-7) ...
468s Setting up rsync (3.3.0-1) ...
469s rsync.service is a disabled or a static unit not running, not starting it.
469s Setting up initramfs-tools-bin (0.142ubuntu27) ...
469s Setting up python3-apt (2.9.0) ...
469s Setting up libfwupd2:armhf (1.9.20-1) ...
469s Setting up vim-tiny (2:9.1.0377-1ubuntu1) ...
469s Setting up man-db (2.12.1-1) ...
469s Updating database of manual pages ...
470s apparmor_parser: Unable to replace "/usr/bin/man".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
470s 
471s man-db.service is a disabled or a static unit not running, not starting it.
471s Setting up perl (5.38.2-4) ...
471s Setting up gir1.2-girepository-2.0:armhf (1.80.1-3) ...
471s Setting up libdpkg-perl (1.22.6ubuntu10) ...
471s Setting up initramfs-tools-core (0.142ubuntu27) ...
471s Setting up fwupd (1.9.20-1) ...
471s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
472s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
472s fwupd.service is a disabled or a static unit not running, not starting it.
472s Setting up initramfs-tools (0.142ubuntu27) ...
472s update-initramfs: deferring update (trigger activated)
472s Setting up dpkg-dev (1.22.6ubuntu10) ...
472s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
472s Processing triggers for dbus (1.14.10-4ubuntu4) ...
472s Processing triggers for initramfs-tools (0.142ubuntu27) ...
473s Reading package lists...
473s Building dependency tree...
473s Reading state information...
474s The following packages will be REMOVED:
474s   libatm1t64*
474s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
474s After this operation, 94.2 kB disk space will be freed.
474s (Reading database ... 
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474s Removing libatm1t64:armhf (1:2.5.1-5.1build1) ...
474s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
476s autopkgtest [08:43:37]: rebooting testbed after setup commands that affected boot
556s Reading package lists...
557s Building dependency tree...
557s Reading state information...
557s Starting pkgProblemResolver with broken count: 0
557s Starting 2 pkgProblemResolver with broken count: 0
557s Done
558s The following additional packages will be installed:
558s   build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
558s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
558s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
558s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13
558s   g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-13
558s   gcc-13-arm-linux-gnueabihf gcc-13-base gcc-arm-linux-gnueabihf gdal-data
558s   gdal-plugins gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
558s   gfortran-arm-linux-gnueabihf icu-devtools javascript-common libaec0 libaom3
558s   libarmadillo12 libarpack2t64 libasan8 libatomic1 libblas-dev libblas3
558s   libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
558s   libcfitsio10t64 libcrypt-dev libdatrie1 libde265-0 libdeflate-dev
558s   libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 libgcc-13-dev
558s   libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev
558s   libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt
558s   libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec
558s   libheif-plugin-libde265 libheif1 libice6 libicu-dev libisl23 libjbig0
558s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
558s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
558s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
558s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
558s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
558s   libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64
558s   libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblerc4 libltdl7
558s   liblua5.4-0 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21
558s   libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7
558s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
558s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
558s   libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 libproj25
558s   libqhull-r8.0 libreadline-dev librttopo1 libsharpyuv0 libsm6 libsnappy1v5
558s   libspatialite8t64 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data
558s   libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libudunits2-0
558s   libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0
558s   libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev
558s   littler mysql-common node-bootstrap-sass node-html5shiv node-normalize.css
558s   pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin proj-data
558s   r-base-core r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc
558s   r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem
558s   r-cran-callr r-cran-class r-cran-classint r-cran-cli r-cran-colorspace
558s   r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl
558s   r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest
558s   r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver
558s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2
558s   r-cran-glue r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools
558s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
558s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice
558s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom
558s   r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise
558s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
558s   r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
558s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise
558s   r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr
558s   r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp
558s   r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart
558s   r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass
558s   r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
558s   r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore
558s   r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model
558s   r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils
558s   r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
558s   r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr
558s   r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs
558s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun
558s   r-cran-xtable r-cran-yaml rpcsvc-proto unixodbc-common unzip x11-common
558s   xdg-utils zip zlib1g-dev
558s Suggested packages:
558s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
558s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
558s   gdb-arm-linux-gnueabihf gfortran-doc gfortran-13-doc libcoarrays-dev apache2
558s   | lighttpd | httpd liblapack-doc glibc-doc geotiff-bin gdal-bin
558s   libgeotiff-epsg libhdf4-alt-dev hdf4-tools libheif-plugin-x265
558s   libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
558s   libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
558s   libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras
558s   fonts-stix libjs-mathjax-doc liblcms2-utils liblzma-doc ncurses-doc
558s   odbc-postgresql tdsodbc ogdi-bin proj-bin readline-doc libstdc++-13-doc
558s   tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex
558s   pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff
558s   ghc php python ruby libjs-katex citation-style-language-styles elpa-ess
558s   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
558s   texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
558s   texlive-extra-utils texinfo r-cran-roxygen2 r-cran-ff r-cran-kernlab
558s   r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-png r-cran-jpeg
558s   r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-magick r-cran-getopt
558s   r-cran-mapproj r-cran-mapdata r-cran-formattable r-cran-nanotime
558s   r-cran-palmerpenguins r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest
558s   r-cran-spelling r-cran-bench r-cran-here r-cran-hms r-cran-plm r-cran-zoo
558s Recommended packages:
558s   bzip2-doc manpages manpages-dev libc-devtools proj-bin libheif-plugin-aomenc
558s   node-jquery libpng-tools poppler-data r-recommended r-doc-html r-cran-future
558s   r-cran-thematic r-cran-mockery r-cran-spelling r-cran-spdata r-cran-tinytest
558s   r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-xml2 r-cran-dt
558s   r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress r-cran-webutils
558s   r-cran-gh r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-unitizer
558s   r-cran-rsvg r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-multcomp
558s   r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-svglite r-cran-vdiffr
558s   r-cran-markdown r-cran-testit r-cran-cairo r-cran-jpeg r-cran-png
558s   r-cran-readr r-cran-r.rsp r-cran-codetools r-cran-formatr r-cran-gridsvg
558s   r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot
558s   node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-geosphere
558s   r-cran-sodium r-cran-future.apply r-cran-lubridate r-cran-bitops
558s   r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-webfakes r-cran-cba
558s   r-cran-pingr r-cran-ncdf4 r-cran-igraph r-cran-gstat r-cran-fields
558s   r-cran-exactextractr r-cran-usethis r-cran-dygraphs r-cran-rsconnect
558s   r-cran-downlit r-cran-dbitest r-cran-gert r-cran-hms r-cran-rvest
558s   r-cran-dichromat r-cran-nanoarrow r-cran-sm r-cran-gsl r-cran-locfit
558s   r-cran-spatial r-cran-nleqslv r-cran-glmnet r-cran-pcict r-cran-rnetcdf
558s   r-cran-clue r-cran-cubelyr r-cran-fnn r-cran-ggforce r-cran-ggthemes
558s   r-cran-mapdata r-cran-ncdfgeom r-cran-ncmeta r-cran-plm r-cran-randomforest
558s   r-cran-spacetime r-cran-viridis r-cran-xts r-cran-zoo r-cran-xml
558s   r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot
558s   r-cran-renv r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl
558s   libx11-protocol-perl x11-utils x11-xserver-utils
558s The following NEW packages will be installed:
558s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf
558s   cpp-arm-linux-gnueabihf dctrl-tools fontconfig fontconfig-config
558s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
558s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13
558s   g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc gcc-13
558s   gcc-13-arm-linux-gnueabihf gcc-13-base gcc-arm-linux-gnueabihf gdal-data
558s   gdal-plugins gfortran gfortran-13 gfortran-13-arm-linux-gnueabihf
558s   gfortran-arm-linux-gnueabihf icu-devtools javascript-common libaec0 libaom3
558s   libarmadillo12 libarpack2t64 libasan8 libatomic1 libblas-dev libblas3
558s   libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
558s   libcfitsio10t64 libcrypt-dev libdatrie1 libde265-0 libdeflate-dev
558s   libdeflate0 libfontconfig1 libfreetype6 libfreexl1 libfyba0t64 libgcc-13-dev
558s   libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 libgfortran-13-dev
558s   libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt
558s   libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-aomdec
558s   libheif-plugin-libde265 libheif1 libice6 libicu-dev libisl23 libjbig0
558s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
558s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
558s   libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js
558s   libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js
558s   libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js
558s   libjs-twitter-bootstrap-datepicker libkmlbase1t64 libkmldom1t64
558s   libkmlengine1t64 liblapack-dev liblapack3 liblcms2-2 liblerc4 libltdl7
558s   liblua5.4-0 liblzma-dev libminizip1t64 libmpc3 libmysqlclient21
558s   libncurses-dev libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7
558s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
558s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
558s   libpixman-1-0 libpkgconf3 libpng-dev libpoppler134 libpq5 libproj25
558s   libqhull-r8.0 libreadline-dev librttopo1 libsharpyuv0 libsm6 libsnappy1v5
558s   libspatialite8t64 libstdc++-13-dev libsuperlu6 libsz2 libtcl8.6 libthai-data
558s   libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libudunits2-0
558s   libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0
558s   libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev
558s   littler mysql-common node-bootstrap-sass node-html5shiv node-normalize.css
558s   pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin proj-data
558s   r-base-core r-base-dev r-cran-abind r-cran-askpass r-cran-base64enc
558s   r-cran-bit r-cran-bit64 r-cran-blob r-cran-brio r-cran-bslib r-cran-cachem
558s   r-cran-callr r-cran-class r-cran-classint r-cran-cli r-cran-colorspace
558s   r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl
558s   r-cran-dbi r-cran-deldir r-cran-desc r-cran-diffobj r-cran-digest
558s   r-cran-dplyr r-cran-e1071 r-cran-evaluate r-cran-fansi r-cran-farver
558s   r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-generics r-cran-ggplot2
558s   r-cran-glue r-cran-goftest r-cran-gtable r-cran-highr r-cran-htmltools
558s   r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite
558s   r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-later r-cran-lattice
558s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-lwgeom
558s   r-cran-magrittr r-cran-maps r-cran-mass r-cran-matrix r-cran-memoise
558s   r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
558s   r-cran-pbapply r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig
558s   r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-polyclip r-cran-praise
558s   r-cran-processx r-cran-promises r-cran-proxy r-cran-ps r-cran-purrr
558s   r-cran-r6 r-cran-rappdirs r-cran-raster r-cran-rcolorbrewer r-cran-rcpp
558s   r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rpart
558s   r-cran-rpostgresql r-cran-rprojroot r-cran-rsqlite r-cran-s2 r-cran-sass
558s   r-cran-scales r-cran-sf r-cran-shiny r-cran-sourcetools r-cran-sp
558s   r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore
558s   r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model
558s   r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.utils
558s   r-cran-stars r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys
558s   r-cran-tensor r-cran-terra r-cran-testthat r-cran-tibble r-cran-tidyr
558s   r-cran-tidyselect r-cran-tinytex r-cran-units r-cran-utf8 r-cran-vctrs
558s   r-cran-viridislite r-cran-waldo r-cran-withr r-cran-wk r-cran-xfun
558s   r-cran-xtable r-cran-yaml rpcsvc-proto unixodbc-common unzip x11-common
558s   xdg-utils zip zlib1g-dev
558s 0 upgraded, 309 newly installed, 0 to remove and 0 not upgraded.
558s Need to get 300 MB/300 MB of archives.
558s After this operation, 858 MB of additional disk space will be used.
558s Get:1 /tmp/autopkgtest.UYjkfx/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [852 B]
558s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libc-dev-bin armhf 2.39-0ubuntu8.1 [19.1 kB]
558s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB]
559s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB]
559s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB]
559s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libc6-dev armhf 2.39-0ubuntu8.1 [1351 kB]
559s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-base armhf 13.2.0-23ubuntu4 [48.9 kB]
559s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libisl23 armhf 0.26-3build1 [544 kB]
559s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB]
559s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [8759 kB]
559s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13 armhf 13.2.0-23ubuntu4 [1034 B]
559s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B]
559s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB]
559s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libcc1-0 armhf 14.1.0-1ubuntu1 [43.3 kB]
559s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB]
559s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libatomic1 armhf 14.1.0-1ubuntu1 [7816 B]
559s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libasan8 armhf 14.1.0-1ubuntu1 [2913 kB]
559s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf libubsan1 armhf 14.1.0-1ubuntu1 [1154 kB]
559s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu4 [899 kB]
559s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [16.9 MB]
559s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13 armhf 13.2.0-23ubuntu4 [453 kB]
559s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B]
559s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B]
559s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu4 [2456 kB]
560s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9941 kB]
560s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13 armhf 13.2.0-23ubuntu4 [14.5 kB]
560s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B]
560s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B]
560s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf build-essential armhf 12.10ubuntu1 [4928 B]
560s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf dctrl-tools armhf 2.24-3build3 [94.7 kB]
560s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB]
560s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
560s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
560s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
560s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
560s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
560s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
560s Get:38 http://ftpmaster.internal/ubuntu oracular/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
560s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
560s Get:40 http://ftpmaster.internal/ubuntu oracular/universe armhf gdal-data all 3.8.5+dfsg-1 [261 kB]
560s Get:41 http://ftpmaster.internal/ubuntu oracular/universe armhf gdal-plugins armhf 3.8.5+dfsg-1 [24.6 kB]
560s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB]
560s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran-13-dev armhf 13.2.0-23ubuntu4 [359 kB]
560s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9182 kB]
560s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf gfortran-13 armhf 13.2.0-23ubuntu4 [11.7 kB]
560s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1024 B]
560s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf gfortran armhf 4:13.2.0-7ubuntu1 [1166 B]
560s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf icu-devtools armhf 74.2-1ubuntu3 [201 kB]
560s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf javascript-common all 11+nmu1 [5936 B]
560s Get:50 http://ftpmaster.internal/ubuntu oracular/universe armhf libaec0 armhf 1.1.3-1 [20.8 kB]
560s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf libaom3 armhf 3.8.2-2build1 [1681 kB]
560s Get:52 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB]
560s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB]
560s Get:54 http://ftpmaster.internal/ubuntu oracular/universe armhf libarpack2t64 armhf 3.9.1-1.1build2 [88.4 kB]
560s Get:55 http://ftpmaster.internal/ubuntu oracular/universe armhf libsuperlu6 armhf 6.0.1+dfsg1-1build1 [155 kB]
560s Get:56 http://ftpmaster.internal/ubuntu oracular/universe armhf libarmadillo12 armhf 1:12.8.2+dfsg-1 [102 kB]
560s Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf libblas-dev armhf 3.12.0-3build1 [132 kB]
560s Get:58 http://ftpmaster.internal/ubuntu oracular/main armhf libsnappy1v5 armhf 1.2.1-1 [28.4 kB]
560s Get:59 http://ftpmaster.internal/ubuntu oracular/universe armhf libblosc1 armhf 1.21.5+ds-1build1 [23.7 kB]
560s Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libbz2-dev armhf 1.0.8-5.1 [30.5 kB]
560s Get:61 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB]
560s Get:62 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
560s Get:63 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
560s Get:64 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
561s Get:65 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB]
561s Get:66 http://ftpmaster.internal/ubuntu oracular/universe armhf libcfitsio10t64 armhf 4.3.1-1.1build2 [504 kB]
561s Get:67 http://ftpmaster.internal/ubuntu oracular/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB]
561s Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libde265-0 armhf 1.0.15-1build3 [158 kB]
561s Get:69 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB]
561s Get:70 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate-dev armhf 1.20-1 [44.6 kB]
561s Get:71 http://ftpmaster.internal/ubuntu oracular/universe armhf libfyba0t64 armhf 4.1.1-11build1 [109 kB]
561s Get:72 http://ftpmaster.internal/ubuntu oracular/universe armhf libminizip1t64 armhf 1:1.3.dfsg-3.1ubuntu2 [19.9 kB]
561s Get:73 http://ftpmaster.internal/ubuntu oracular/universe armhf libfreexl1 armhf 2.0.0-1build2 [37.6 kB]
561s Get:74 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeos3.12.1t64 armhf 3.12.1-3build1 [867 kB]
561s Get:75 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeos-c1t64 armhf 3.12.1-3build1 [92.8 kB]
561s Get:76 http://ftpmaster.internal/ubuntu oracular/universe armhf proj-data all 9.4.0-1build2 [7885 kB]
561s Get:77 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
561s Get:78 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB]
561s Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
561s Get:80 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB]
561s Get:81 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB]
561s Get:82 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB]
561s Get:83 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu2 [178 kB]
561s Get:84 http://ftpmaster.internal/ubuntu oracular/universe armhf libproj25 armhf 9.4.0-1build2 [1281 kB]
561s Get:85 http://ftpmaster.internal/ubuntu oracular/universe armhf libgeotiff5 armhf 1.7.1-5build1 [52.1 kB]
561s Get:86 http://ftpmaster.internal/ubuntu oracular/main armhf libgif7 armhf 5.2.2-1ubuntu1 [32.6 kB]
561s Get:87 http://ftpmaster.internal/ubuntu oracular/universe armhf libsz2 armhf 1.1.3-1 [5302 B]
561s Get:88 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf4-0-alt armhf 4.3.0-1 [253 kB]
561s Get:89 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.1ubuntu4 [1337 kB]
561s Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-aomdec armhf 1.17.6-1ubuntu4 [9862 B]
561s Get:91 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-libde265 armhf 1.17.6-1ubuntu4 [10.3 kB]
561s Get:92 http://ftpmaster.internal/ubuntu oracular/main armhf libheif1 armhf 1.17.6-1ubuntu4 [267 kB]
561s Get:93 http://ftpmaster.internal/ubuntu oracular/universe armhf liburiparser1 armhf 0.9.7+dfsg-2build1 [29.9 kB]
561s Get:94 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmlbase1t64 armhf 1.3.0-12build1 [45.0 kB]
561s Get:95 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmldom1t64 armhf 1.3.0-12build1 [145 kB]
561s Get:96 http://ftpmaster.internal/ubuntu oracular/universe armhf libkmlengine1t64 armhf 1.3.0-12build1 [69.6 kB]
561s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf mysql-common all 5.8+1.1.0build1 [6746 B]
561s Get:98 http://ftpmaster.internal/ubuntu oracular/main armhf libmysqlclient21 armhf 8.0.37-1 [1265 kB]
561s Get:99 http://ftpmaster.internal/ubuntu oracular/universe armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.1ubuntu4 [54.8 kB]
561s Get:100 http://ftpmaster.internal/ubuntu oracular/universe armhf libnetcdf19t64 armhf 1:4.9.2-5ubuntu4 [422 kB]
561s Get:101 http://ftpmaster.internal/ubuntu oracular/main armhf libltdl7 armhf 2.4.7-7build1 [37.6 kB]
561s Get:102 http://ftpmaster.internal/ubuntu oracular/main armhf libodbc2 armhf 2.3.12-1build2 [144 kB]
561s Get:103 http://ftpmaster.internal/ubuntu oracular/main armhf unixodbc-common all 2.3.12-1build2 [8646 B]
561s Get:104 http://ftpmaster.internal/ubuntu oracular/main armhf libodbcinst2 armhf 2.3.12-1build2 [30.4 kB]
561s Get:105 http://ftpmaster.internal/ubuntu oracular/universe armhf libogdi4.1 armhf 4.1.1+ds-4 [185 kB]
562s Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf libopenjp2-7 armhf 2.5.0-2build3 [160 kB]
562s Get:107 http://ftpmaster.internal/ubuntu oracular/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB]
562s Get:108 http://ftpmaster.internal/ubuntu oracular/main armhf libpoppler134 armhf 24.02.0-1ubuntu9 [968 kB]
562s Get:109 http://ftpmaster.internal/ubuntu oracular/main armhf libpq5 armhf 16.2-1ubuntu4 [122 kB]
562s Get:110 http://ftpmaster.internal/ubuntu oracular/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB]
562s Get:111 http://ftpmaster.internal/ubuntu oracular/universe armhf librttopo1 armhf 1.1.0-3build2 [160 kB]
562s Get:112 http://ftpmaster.internal/ubuntu oracular/universe armhf libspatialite8t64 armhf 5.1.0-3build1 [2019 kB]
562s Get:113 http://ftpmaster.internal/ubuntu oracular/universe armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3 [817 kB]
562s Get:114 http://ftpmaster.internal/ubuntu oracular/universe armhf libgdal34t64 armhf 3.8.5+dfsg-1 [7869 kB]
562s Get:115 http://ftpmaster.internal/ubuntu oracular/main armhf libgraphite2-3 armhf 1.3.14-2build1 [64.6 kB]
562s Get:116 http://ftpmaster.internal/ubuntu oracular/main armhf libharfbuzz0b armhf 8.3.0-2build2 [446 kB]
562s Get:117 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
562s Get:118 http://ftpmaster.internal/ubuntu oracular/main armhf libice6 armhf 2:1.0.10-1build3 [35.4 kB]
562s Get:119 http://ftpmaster.internal/ubuntu oracular/main armhf libicu-dev armhf 74.2-1ubuntu3 [11.6 MB]
562s Get:120 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8-dev armhf 2.1.5-2ubuntu2 [262 kB]
562s Get:121 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8-dev armhf 8c-2ubuntu11 [1484 B]
562s Get:122 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-dev armhf 8c-2ubuntu11 [1482 B]
562s Get:123 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
562s Get:124 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
562s Get:125 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
562s Get:126 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-d3 all 3.5.17-4 [132 kB]
562s Get:127 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-es5-shim all 4.6.7-2 [39.8 kB]
562s Get:128 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
563s Get:129 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
563s Get:130 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
563s Get:131 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
563s Get:132 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
563s Get:133 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
563s Get:134 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
563s Get:135 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
563s Get:136 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
563s Get:137 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack-dev armhf 3.12.0-3build1 [2177 kB]
563s Get:138 http://ftpmaster.internal/ubuntu oracular/main armhf liblua5.4-0 armhf 5.4.6-3build2 [133 kB]
563s Get:139 http://ftpmaster.internal/ubuntu oracular/main armhf libncurses-dev armhf 6.4+20240113-1ubuntu2 [501 kB]
563s Get:140 http://ftpmaster.internal/ubuntu oracular/main armhf libthai-data all 0.1.29-2build1 [158 kB]
563s Get:141 http://ftpmaster.internal/ubuntu oracular/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB]
563s Get:142 http://ftpmaster.internal/ubuntu oracular/main armhf libpango-1.0-0 armhf 1.52.2+ds-1 [209 kB]
563s Get:143 http://ftpmaster.internal/ubuntu oracular/main armhf libpangoft2-1.0-0 armhf 1.52.2+ds-1 [36.4 kB]
563s Get:144 http://ftpmaster.internal/ubuntu oracular/main armhf libpangocairo-1.0-0 armhf 1.52.2+ds-1 [24.9 kB]
563s Get:145 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper1 armhf 1.1.29build1 [12.6 kB]
563s Get:146 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper-utils armhf 1.1.29build1 [8184 B]
563s Get:147 http://ftpmaster.internal/ubuntu oracular/main armhf libpcre2-16-0 armhf 10.42-4ubuntu2 [180 kB]
563s Get:148 http://ftpmaster.internal/ubuntu oracular/main armhf libpcre2-32-0 armhf 10.42-4ubuntu2 [171 kB]
563s Get:149 http://ftpmaster.internal/ubuntu oracular/main armhf libpcre2-posix3 armhf 10.42-4ubuntu2 [6088 B]
563s Get:150 http://ftpmaster.internal/ubuntu oracular/main armhf libpcre2-dev armhf 10.42-4ubuntu2 [664 kB]
563s Get:151 http://ftpmaster.internal/ubuntu oracular/main armhf libpkgconf3 armhf 1.8.1-2build1 [26.3 kB]
563s Get:152 http://ftpmaster.internal/ubuntu oracular/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu2 [880 kB]
563s Get:153 http://ftpmaster.internal/ubuntu oracular/main armhf libpng-dev armhf 1.6.43-5build1 [248 kB]
563s Get:154 http://ftpmaster.internal/ubuntu oracular/main armhf libreadline-dev armhf 8.2-4build1 [153 kB]
563s Get:155 http://ftpmaster.internal/ubuntu oracular/main armhf libsm6 armhf 2:1.2.3-1build3 [14.1 kB]
563s Get:156 http://ftpmaster.internal/ubuntu oracular/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB]
563s Get:157 http://ftpmaster.internal/ubuntu oracular/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
563s Get:158 http://ftpmaster.internal/ubuntu oracular/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
563s Get:159 http://ftpmaster.internal/ubuntu oracular/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB]
563s Get:160 http://ftpmaster.internal/ubuntu oracular/universe armhf libudunits2-data all 2.2.28-7build1 [19.4 kB]
563s Get:161 http://ftpmaster.internal/ubuntu oracular/universe armhf libudunits2-0 armhf 2.2.28-7build1 [47.1 kB]
563s Get:162 http://ftpmaster.internal/ubuntu oracular/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB]
563s Get:163 http://ftpmaster.internal/ubuntu oracular/main armhf zip armhf 3.0-13build1 [163 kB]
563s Get:164 http://ftpmaster.internal/ubuntu oracular/main armhf unzip armhf 6.0-28ubuntu4 [163 kB]
563s Get:165 http://ftpmaster.internal/ubuntu oracular/main armhf xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
563s Get:166 http://ftpmaster.internal/ubuntu oracular/universe armhf r-base-core armhf 4.4.0-2 [28.1 MB]
564s Get:167 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-littler armhf 0.3.20-1 [82.6 kB]
564s Get:168 http://ftpmaster.internal/ubuntu oracular/universe armhf littler all 0.3.20-1 [2486 B]
564s Get:169 http://ftpmaster.internal/ubuntu oracular/universe armhf node-bootstrap-sass all 3.4.3-2 [187 kB]
564s Get:170 http://ftpmaster.internal/ubuntu oracular/universe armhf node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
564s Get:171 http://ftpmaster.internal/ubuntu oracular/universe armhf node-normalize.css all 8.0.1-5 [10.8 kB]
564s Get:172 http://ftpmaster.internal/ubuntu oracular/universe armhf pandoc-data all 3.1.3-2build2 [78.3 kB]
564s Get:173 http://ftpmaster.internal/ubuntu oracular/universe armhf pandoc armhf 3.1.3+ds-3build1 [31.9 MB]
564s Get:174 http://ftpmaster.internal/ubuntu oracular/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [165 kB]
564s Get:175 http://ftpmaster.internal/ubuntu oracular/main armhf pkgconf-bin armhf 1.8.1-2build1 [20.7 kB]
564s Get:176 http://ftpmaster.internal/ubuntu oracular/main armhf pkgconf armhf 1.8.1-2build1 [16.8 kB]
564s Get:177 http://ftpmaster.internal/ubuntu oracular/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [184 kB]
564s Get:178 http://ftpmaster.internal/ubuntu oracular/universe armhf r-base-dev all 4.4.0-2 [4340 B]
564s Get:179 http://ftpmaster.internal/ubuntu oracular/universe armhf pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
564s Get:180 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-abind all 1.4-5-2 [63.6 kB]
564s Get:181 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sys armhf 3.4.2-1 [43.7 kB]
564s Get:182 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-askpass armhf 1.2.0-1 [24.3 kB]
564s Get:183 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-base64enc armhf 0.1-3-3 [27.3 kB]
564s Get:184 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bit armhf 4.0.5-1 [1054 kB]
564s Get:185 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bit64 armhf 4.0.5-1 [462 kB]
564s Get:186 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rlang armhf 1.1.3-1 [1658 kB]
564s Get:187 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cli armhf 3.6.2-1 [1363 kB]
564s Get:188 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-glue armhf 1.7.0-1 [153 kB]
564s Get:189 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
564s Get:190 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-vctrs armhf 0.6.5-1 [1310 kB]
565s Get:191 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-blob all 1.2.4-1 [49.8 kB]
565s Get:192 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-brio armhf 1.1.5-1 [37.9 kB]
565s Get:193 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fastmap armhf 1.1.1-1 [68.1 kB]
565s Get:194 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cachem armhf 1.0.8-1 [72.0 kB]
565s Get:195 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-digest armhf 0.6.35-1 [202 kB]
565s Get:196 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-htmltools armhf 0.5.8.1-1 [372 kB]
565s Get:197 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
565s Get:198 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB]
565s Get:199 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-memoise all 2.0.1-1 [53.9 kB]
565s Get:200 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mime armhf 0.12-2 [35.5 kB]
565s Get:201 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fs armhf 1.6.3+dfsg-1build2 [226 kB]
565s Get:202 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-r6 all 2.5.1-1 [99.0 kB]
565s Get:203 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rappdirs armhf 0.3.3-1 [47.4 kB]
565s Get:204 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sass armhf 0.4.9+dfsg-1 [926 kB]
565s Get:205 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-bslib all 0.7.0+dfsg-1 [4255 kB]
566s Get:206 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-ps armhf 1.7.6-1 [310 kB]
566s Get:207 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-processx armhf 3.8.3-1 [334 kB]
566s Get:208 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-callr all 3.7.6-1 [458 kB]
566s Get:209 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mass armhf 7.3-60.0.1-1 [1118 kB]
566s Get:210 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-class armhf 7.3-22-2build1 [87.0 kB]
566s Get:211 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-proxy armhf 0.4-27-1 [180 kB]
566s Get:212 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-e1071 armhf 1.7-14-1 [551 kB]
566s Get:213 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-kernsmooth armhf 2.23-24-1 [91.1 kB]
566s Get:214 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-classint armhf 0.4-10+dfsg-1 [105 kB]
566s Get:215 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1538 kB]
567s Get:216 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-commonmark armhf 1.9.1-1 [110 kB]
567s Get:217 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lazyeval armhf 0.2.2-1build1 [142 kB]
567s Get:218 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rex all 1.2.1-1 [129 kB]
567s Get:219 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-curl armhf 5.2.0+dfsg-1build2 [175 kB]
567s Get:220 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-openssl armhf 2.1.1+dfsg-2build2 [398 kB]
567s Get:221 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
567s Get:222 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-crayon all 1.5.2-1 [164 kB]
567s Get:223 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-withr all 2.5.0-1 [225 kB]
567s Get:224 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-yaml armhf 2.3.8-2 [100 kB]
567s Get:225 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-covr armhf 3.6.4+dfsg-1 [302 kB]
567s Get:226 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-cpp11 all 0.4.7-1 [266 kB]
567s Get:227 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-dbi all 1.2.2-1 [823 kB]
567s Get:228 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-deldir armhf 2.0-4-1build1 [268 kB]
567s Get:229 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-desc all 1.4.3-1 [359 kB]
567s Get:230 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-diffobj armhf 0.3.5-1 [1115 kB]
567s Get:231 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-generics all 0.1.3-1 [81.3 kB]
567s Get:232 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-magrittr armhf 2.0.3-1 [154 kB]
567s Get:233 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
567s Get:234 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-utf8 armhf 1.2.4-1 [136 kB]
567s Get:235 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
567s Get:236 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
567s Get:237 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tibble armhf 3.2.1+dfsg-2 [415 kB]
567s Get:238 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [218 kB]
567s Get:239 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-dplyr armhf 1.1.4-1 [1510 kB]
567s Get:240 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-evaluate all 0.23-1 [90.2 kB]
567s Get:241 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-farver armhf 2.1.1-2 [1353 kB]
567s Get:242 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-fontawesome all 0.5.2-1 [1300 kB]
567s Get:243 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
567s Get:244 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-isoband armhf 0.2.7-1 [1477 kB]
567s Get:245 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lattice armhf 0.22-6-1 [1363 kB]
567s Get:246 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-nlme armhf 3.1.164-1build1 [2248 kB]
568s Get:247 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-matrix armhf 1.6-5-1 [3762 kB]
568s Get:248 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-mgcv armhf 1.9-1-1 [3205 kB]
568s Get:249 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-labeling all 0.4.3-1 [62.1 kB]
568s Get:250 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-munsell all 0.5.0-2build1 [208 kB]
568s Get:251 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
568s Get:252 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-viridislite all 0.4.2-2 [1088 kB]
568s Get:253 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-scales all 1.3.0-1 [603 kB]
568s Get:254 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
568s Get:255 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-goftest armhf 1.2-3-1 [58.6 kB]
568s Get:256 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-xfun armhf 0.44+dfsg-1 [517 kB]
568s Get:257 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-highr all 0.10+dfsg-2 [38.5 kB]
568s Get:258 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
568s Get:259 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rcpp armhf 1.0.12-1 [1968 kB]
568s Get:260 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-later armhf 1.3.2+dfsg-1 [118 kB]
568s Get:261 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-promises armhf 1.3.0+dfsg-1 [285 kB]
568s Get:262 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-httpuv armhf 1.6.15+dfsg-1 [480 kB]
568s Get:263 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
568s Get:264 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-knitr all 1.46+dfsg-1 [911 kB]
568s Get:265 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-units armhf 0.8-5+dfsg-1 [270 kB]
568s Get:266 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-wk armhf 0.9.1-1 [1781 kB]
568s Get:267 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-s2 armhf 1.1.6-1build2 [1895 kB]
568s Get:268 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sf armhf 1.0-16+dfsg-1 [3038 kB]
569s Get:269 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-lwgeom armhf 0.2-13-3build2 [365 kB]
569s Get:270 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-maps armhf 3.4.2-1 [2355 kB]
569s Get:271 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pbapply all 1.7-2-1 [102 kB]
569s Get:272 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgbuild all 1.4.3-1 [209 kB]
569s Get:273 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rprojroot all 2.0.4-1 [124 kB]
569s Get:274 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-pkgload all 1.3.4-1 [207 kB]
569s Get:275 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-plogr all 0.2.0-3build1 [15.1 kB]
569s Get:276 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-polyclip armhf 1.10-6-1 [107 kB]
569s Get:277 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-praise all 1.0.0-4build1 [20.3 kB]
569s Get:278 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-purrr armhf 1.0.2-1 [499 kB]
569s Get:279 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sp armhf 1:2.1-2+dfsg-1 [1445 kB]
569s Get:280 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-terra armhf 1.7-65-1build2 [3556 kB]
569s Get:281 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-raster armhf 3.6-26-1 [3093 kB]
569s Get:282 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
569s Get:283 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stringi armhf 1.8.3-1 [859 kB]
569s Get:284 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stringr all 1.5.1-1 [290 kB]
569s Get:285 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tinytex all 0.49-1 [141 kB]
569s Get:286 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-modernizr all 3.13.0-0.1 [101 kB]
569s Get:287 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
569s Get:288 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-sourcetools armhf 0.1.7-1-1 [45.7 kB]
569s Get:289 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
569s Get:290 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-shiny all 1.8.1.1+dfsg-1 [2873 kB]
569s Get:291 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
569s Get:292 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-survival armhf 3.5-8-1 [6104 kB]
569s Get:293 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rpart armhf 4.1.23-1build1 [657 kB]
569s Get:294 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rpostgresql armhf 0.7-6+dfsg-1 [371 kB]
569s Get:295 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-rsqlite armhf 2.3.4-1 [1210 kB]
569s Get:296 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.utils armhf 3.0-4-1 [359 kB]
569s Get:297 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.data all 3.0-4-1 [4090 kB]
569s Get:298 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.geom armhf 3.2-9-1 [3924 kB]
569s Get:299 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.random armhf 3.2-3-1 [1152 kB]
569s Get:300 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tensor all 1.5-4 [15.7 kB]
569s Get:301 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.sparse armhf 3.0-3-1 [213 kB]
569s Get:302 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.explore armhf 3.2-5-1 [3267 kB]
570s Get:303 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.model armhf 3.2-11-1 [3385 kB]
570s Get:304 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat.linnet armhf 3.1-5-1 [1465 kB]
570s Get:305 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-spatstat armhf 3.0-7-1 [3817 kB]
571s Get:306 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-stars all 0.6-4-1 [4030 kB]
571s Get:307 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-waldo all 0.5.2-1build1 [120 kB]
571s Get:308 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-testthat armhf 3.2.1-1 [1666 kB]
571s Get:309 http://ftpmaster.internal/ubuntu oracular/universe armhf r-cran-tidyr armhf 1.3.1-1 [1152 kB]
572s Preconfiguring packages ...
572s Fetched 300 MB in 13s (23.3 MB/s)
572s Selecting previously unselected package libc-dev-bin.
572s (Reading database ... 
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572s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu8.1_armhf.deb ...
572s Unpacking libc-dev-bin (2.39-0ubuntu8.1) ...
572s Selecting previously unselected package linux-libc-dev:armhf.
572s Preparing to unpack .../001-linux-libc-dev_6.8.0-31.31_armhf.deb ...
572s Unpacking linux-libc-dev:armhf (6.8.0-31.31) ...
572s Selecting previously unselected package libcrypt-dev:armhf.
572s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ...
572s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ...
572s Selecting previously unselected package rpcsvc-proto.
572s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ...
572s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ...
572s Selecting previously unselected package libc6-dev:armhf.
572s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu8.1_armhf.deb ...
572s Unpacking libc6-dev:armhf (2.39-0ubuntu8.1) ...
572s Selecting previously unselected package gcc-13-base:armhf.
572s Preparing to unpack .../005-gcc-13-base_13.2.0-23ubuntu4_armhf.deb ...
572s Unpacking gcc-13-base:armhf (13.2.0-23ubuntu4) ...
572s Selecting previously unselected package libisl23:armhf.
572s Preparing to unpack .../006-libisl23_0.26-3build1_armhf.deb ...
572s Unpacking libisl23:armhf (0.26-3build1) ...
572s Selecting previously unselected package libmpc3:armhf.
572s Preparing to unpack .../007-libmpc3_1.3.1-1build1_armhf.deb ...
572s Unpacking libmpc3:armhf (1.3.1-1build1) ...
572s Selecting previously unselected package cpp-13-arm-linux-gnueabihf.
572s Preparing to unpack .../008-cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ...
572s Unpacking cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ...
572s Selecting previously unselected package cpp-13.
572s Preparing to unpack .../009-cpp-13_13.2.0-23ubuntu4_armhf.deb ...
572s Unpacking cpp-13 (13.2.0-23ubuntu4) ...
572s Selecting previously unselected package cpp-arm-linux-gnueabihf.
572s Preparing to unpack .../010-cpp-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
572s Unpacking cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
572s Selecting previously unselected package cpp.
572s Preparing to unpack .../011-cpp_4%3a13.2.0-7ubuntu1_armhf.deb ...
572s Unpacking cpp (4:13.2.0-7ubuntu1) ...
573s Selecting previously unselected package libcc1-0:armhf.
573s Preparing to unpack .../012-libcc1-0_14.1.0-1ubuntu1_armhf.deb ...
573s Unpacking libcc1-0:armhf (14.1.0-1ubuntu1) ...
573s Selecting previously unselected package libgomp1:armhf.
573s Preparing to unpack .../013-libgomp1_14.1.0-1ubuntu1_armhf.deb ...
573s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ...
573s Selecting previously unselected package libatomic1:armhf.
573s Preparing to unpack .../014-libatomic1_14.1.0-1ubuntu1_armhf.deb ...
573s Unpacking libatomic1:armhf (14.1.0-1ubuntu1) ...
573s Selecting previously unselected package libasan8:armhf.
573s Preparing to unpack .../015-libasan8_14.1.0-1ubuntu1_armhf.deb ...
573s Unpacking libasan8:armhf (14.1.0-1ubuntu1) ...
573s Selecting previously unselected package libubsan1:armhf.
573s Preparing to unpack .../016-libubsan1_14.1.0-1ubuntu1_armhf.deb ...
573s Unpacking libubsan1:armhf (14.1.0-1ubuntu1) ...
573s Selecting previously unselected package libgcc-13-dev:armhf.
573s Preparing to unpack .../017-libgcc-13-dev_13.2.0-23ubuntu4_armhf.deb ...
573s Unpacking libgcc-13-dev:armhf (13.2.0-23ubuntu4) ...
573s Selecting previously unselected package gcc-13-arm-linux-gnueabihf.
573s Preparing to unpack .../018-gcc-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ...
573s Unpacking gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ...
573s Selecting previously unselected package gcc-13.
573s Preparing to unpack .../019-gcc-13_13.2.0-23ubuntu4_armhf.deb ...
573s Unpacking gcc-13 (13.2.0-23ubuntu4) ...
573s Selecting previously unselected package gcc-arm-linux-gnueabihf.
573s Preparing to unpack .../020-gcc-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
573s Unpacking gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
573s Selecting previously unselected package gcc.
573s Preparing to unpack .../021-gcc_4%3a13.2.0-7ubuntu1_armhf.deb ...
573s Unpacking gcc (4:13.2.0-7ubuntu1) ...
573s Selecting previously unselected package libstdc++-13-dev:armhf.
573s Preparing to unpack .../022-libstdc++-13-dev_13.2.0-23ubuntu4_armhf.deb ...
573s Unpacking libstdc++-13-dev:armhf (13.2.0-23ubuntu4) ...
573s Selecting previously unselected package g++-13-arm-linux-gnueabihf.
574s Preparing to unpack .../023-g++-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ...
574s Unpacking g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ...
574s Selecting previously unselected package g++-13.
574s Preparing to unpack .../024-g++-13_13.2.0-23ubuntu4_armhf.deb ...
574s Unpacking g++-13 (13.2.0-23ubuntu4) ...
574s Selecting previously unselected package g++-arm-linux-gnueabihf.
574s Preparing to unpack .../025-g++-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
574s Unpacking g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
574s Selecting previously unselected package g++.
574s Preparing to unpack .../026-g++_4%3a13.2.0-7ubuntu1_armhf.deb ...
574s Unpacking g++ (4:13.2.0-7ubuntu1) ...
574s Selecting previously unselected package build-essential.
574s Preparing to unpack .../027-build-essential_12.10ubuntu1_armhf.deb ...
574s Unpacking build-essential (12.10ubuntu1) ...
574s Selecting previously unselected package dctrl-tools.
574s Preparing to unpack .../028-dctrl-tools_2.24-3build3_armhf.deb ...
574s Unpacking dctrl-tools (2.24-3build3) ...
574s Selecting previously unselected package libfreetype6:armhf.
574s Preparing to unpack .../029-libfreetype6_2.13.2+dfsg-1build3_armhf.deb ...
574s Unpacking libfreetype6:armhf (2.13.2+dfsg-1build3) ...
574s Selecting previously unselected package fonts-dejavu-mono.
574s Preparing to unpack .../030-fonts-dejavu-mono_2.37-8_all.deb ...
574s Unpacking fonts-dejavu-mono (2.37-8) ...
574s Selecting previously unselected package fonts-dejavu-core.
574s Preparing to unpack .../031-fonts-dejavu-core_2.37-8_all.deb ...
574s Unpacking fonts-dejavu-core (2.37-8) ...
574s Selecting previously unselected package fontconfig-config.
574s Preparing to unpack .../032-fontconfig-config_2.15.0-1.1ubuntu2_armhf.deb ...
574s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
574s Selecting previously unselected package libfontconfig1:armhf.
574s Preparing to unpack .../033-libfontconfig1_2.15.0-1.1ubuntu2_armhf.deb ...
574s Unpacking libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
574s Selecting previously unselected package fontconfig.
574s Preparing to unpack .../034-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ...
574s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
574s Selecting previously unselected package fonts-font-awesome.
574s Preparing to unpack .../035-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
574s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
574s Selecting previously unselected package fonts-glyphicons-halflings.
574s Preparing to unpack .../036-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
574s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
574s Selecting previously unselected package fonts-mathjax.
574s Preparing to unpack .../037-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
574s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
575s Selecting previously unselected package gdal-data.
575s Preparing to unpack .../038-gdal-data_3.8.5+dfsg-1_all.deb ...
575s Unpacking gdal-data (3.8.5+dfsg-1) ...
575s Selecting previously unselected package gdal-plugins:armhf.
575s Preparing to unpack .../039-gdal-plugins_3.8.5+dfsg-1_armhf.deb ...
575s Unpacking gdal-plugins:armhf (3.8.5+dfsg-1) ...
575s Selecting previously unselected package libgfortran5:armhf.
575s Preparing to unpack .../040-libgfortran5_14.1.0-1ubuntu1_armhf.deb ...
575s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ...
575s Selecting previously unselected package libgfortran-13-dev:armhf.
575s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-23ubuntu4_armhf.deb ...
575s Unpacking libgfortran-13-dev:armhf (13.2.0-23ubuntu4) ...
575s Selecting previously unselected package gfortran-13-arm-linux-gnueabihf.
575s Preparing to unpack .../042-gfortran-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ...
575s Unpacking gfortran-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ...
575s Selecting previously unselected package gfortran-13.
575s Preparing to unpack .../043-gfortran-13_13.2.0-23ubuntu4_armhf.deb ...
575s Unpacking gfortran-13 (13.2.0-23ubuntu4) ...
575s Selecting previously unselected package gfortran-arm-linux-gnueabihf.
575s Preparing to unpack .../044-gfortran-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ...
575s Unpacking gfortran-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ...
575s Selecting previously unselected package gfortran.
575s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_armhf.deb ...
575s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
575s Selecting previously unselected package icu-devtools.
575s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu3_armhf.deb ...
575s Unpacking icu-devtools (74.2-1ubuntu3) ...
575s Selecting previously unselected package javascript-common.
575s Preparing to unpack .../047-javascript-common_11+nmu1_all.deb ...
575s Unpacking javascript-common (11+nmu1) ...
575s Selecting previously unselected package libaec0:armhf.
575s Preparing to unpack .../048-libaec0_1.1.3-1_armhf.deb ...
575s Unpacking libaec0:armhf (1.1.3-1) ...
575s Selecting previously unselected package libaom3:armhf.
575s Preparing to unpack .../049-libaom3_3.8.2-2build1_armhf.deb ...
575s Unpacking libaom3:armhf (3.8.2-2build1) ...
575s Selecting previously unselected package libblas3:armhf.
575s Preparing to unpack .../050-libblas3_3.12.0-3build1_armhf.deb ...
575s Unpacking libblas3:armhf (3.12.0-3build1) ...
577s Selecting previously unselected package liblapack3:armhf.
577s Preparing to unpack .../051-liblapack3_3.12.0-3build1_armhf.deb ...
577s Unpacking liblapack3:armhf (3.12.0-3build1) ...
577s Selecting previously unselected package libarpack2t64:armhf.
577s Preparing to unpack .../052-libarpack2t64_3.9.1-1.1build2_armhf.deb ...
577s Unpacking libarpack2t64:armhf (3.9.1-1.1build2) ...
577s Selecting previously unselected package libsuperlu6:armhf.
577s Preparing to unpack .../053-libsuperlu6_6.0.1+dfsg1-1build1_armhf.deb ...
577s Unpacking libsuperlu6:armhf (6.0.1+dfsg1-1build1) ...
577s Selecting previously unselected package libarmadillo12.
577s Preparing to unpack .../054-libarmadillo12_1%3a12.8.2+dfsg-1_armhf.deb ...
577s Unpacking libarmadillo12 (1:12.8.2+dfsg-1) ...
577s Selecting previously unselected package libblas-dev:armhf.
577s Preparing to unpack .../055-libblas-dev_3.12.0-3build1_armhf.deb ...
577s Unpacking libblas-dev:armhf (3.12.0-3build1) ...
577s Selecting previously unselected package libsnappy1v5:armhf.
577s Preparing to unpack .../056-libsnappy1v5_1.2.1-1_armhf.deb ...
577s Unpacking libsnappy1v5:armhf (1.2.1-1) ...
577s Selecting previously unselected package libblosc1:armhf.
577s Preparing to unpack .../057-libblosc1_1.21.5+ds-1build1_armhf.deb ...
577s Unpacking libblosc1:armhf (1.21.5+ds-1build1) ...
577s Selecting previously unselected package libbz2-dev:armhf.
577s Preparing to unpack .../058-libbz2-dev_1.0.8-5.1_armhf.deb ...
577s Unpacking libbz2-dev:armhf (1.0.8-5.1) ...
577s Selecting previously unselected package libpixman-1-0:armhf.
577s Preparing to unpack .../059-libpixman-1-0_0.42.2-1build1_armhf.deb ...
577s Unpacking libpixman-1-0:armhf (0.42.2-1build1) ...
577s Selecting previously unselected package libxcb-render0:armhf.
577s Preparing to unpack .../060-libxcb-render0_1.17.0-2_armhf.deb ...
577s Unpacking libxcb-render0:armhf (1.17.0-2) ...
577s Selecting previously unselected package libxcb-shm0:armhf.
577s Preparing to unpack .../061-libxcb-shm0_1.17.0-2_armhf.deb ...
577s Unpacking libxcb-shm0:armhf (1.17.0-2) ...
577s Selecting previously unselected package libxrender1:armhf.
577s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1build1_armhf.deb ...
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577s Selecting previously unselected package libcairo2:armhf.
577s Preparing to unpack .../063-libcairo2_1.18.0-3build1_armhf.deb ...
577s Unpacking libcairo2:armhf (1.18.0-3build1) ...
577s Selecting previously unselected package libcfitsio10t64:armhf.
577s Preparing to unpack .../064-libcfitsio10t64_4.3.1-1.1build2_armhf.deb ...
577s Unpacking libcfitsio10t64:armhf (4.3.1-1.1build2) ...
577s Selecting previously unselected package libdatrie1:armhf.
577s Preparing to unpack .../065-libdatrie1_0.2.13-3build1_armhf.deb ...
577s Unpacking libdatrie1:armhf (0.2.13-3build1) ...
577s Selecting previously unselected package libde265-0:armhf.
577s Preparing to unpack .../066-libde265-0_1.0.15-1build3_armhf.deb ...
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577s Selecting previously unselected package libdeflate0:armhf.
577s Preparing to unpack .../067-libdeflate0_1.20-1_armhf.deb ...
577s Unpacking libdeflate0:armhf (1.20-1) ...
577s Selecting previously unselected package libdeflate-dev:armhf.
577s Preparing to unpack .../068-libdeflate-dev_1.20-1_armhf.deb ...
577s Unpacking libdeflate-dev:armhf (1.20-1) ...
577s Selecting previously unselected package libfyba0t64:armhf.
577s Preparing to unpack .../069-libfyba0t64_4.1.1-11build1_armhf.deb ...
577s Unpacking libfyba0t64:armhf (4.1.1-11build1) ...
577s Selecting previously unselected package libminizip1t64:armhf.
577s Preparing to unpack .../070-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ...
577s Unpacking libminizip1t64:armhf (1:1.3.dfsg-3.1ubuntu2) ...
577s Selecting previously unselected package libfreexl1:armhf.
577s Preparing to unpack .../071-libfreexl1_2.0.0-1build2_armhf.deb ...
577s Unpacking libfreexl1:armhf (2.0.0-1build2) ...
577s Selecting previously unselected package libgeos3.12.1t64:armhf.
577s Preparing to unpack .../072-libgeos3.12.1t64_3.12.1-3build1_armhf.deb ...
577s Unpacking libgeos3.12.1t64:armhf (3.12.1-3build1) ...
577s Selecting previously unselected package libgeos-c1t64:armhf.
577s Preparing to unpack .../073-libgeos-c1t64_3.12.1-3build1_armhf.deb ...
577s Unpacking libgeos-c1t64:armhf (3.12.1-3build1) ...
577s Selecting previously unselected package proj-data.
577s Preparing to unpack .../074-proj-data_9.4.0-1build2_all.deb ...
577s Unpacking proj-data (9.4.0-1build2) ...
577s Selecting previously unselected package libjbig0:armhf.
577s Preparing to unpack .../075-libjbig0_2.1-6.1ubuntu2_armhf.deb ...
577s Unpacking libjbig0:armhf (2.1-6.1ubuntu2) ...
577s Selecting previously unselected package libjpeg-turbo8:armhf.
577s Preparing to unpack .../076-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ...
577s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ...
577s Selecting previously unselected package libjpeg8:armhf.
577s Preparing to unpack .../077-libjpeg8_8c-2ubuntu11_armhf.deb ...
577s Unpacking libjpeg8:armhf (8c-2ubuntu11) ...
577s Selecting previously unselected package liblerc4:armhf.
577s Preparing to unpack .../078-liblerc4_4.0.0+ds-4ubuntu2_armhf.deb ...
577s Unpacking liblerc4:armhf (4.0.0+ds-4ubuntu2) ...
577s Selecting previously unselected package libsharpyuv0:armhf.
577s Preparing to unpack .../079-libsharpyuv0_1.4.0-0.1_armhf.deb ...
577s Unpacking libsharpyuv0:armhf (1.4.0-0.1) ...
577s Selecting previously unselected package libwebp7:armhf.
577s Preparing to unpack .../080-libwebp7_1.4.0-0.1_armhf.deb ...
577s Unpacking libwebp7:armhf (1.4.0-0.1) ...
577s Selecting previously unselected package libtiff6:armhf.
577s Preparing to unpack .../081-libtiff6_4.5.1+git230720-4ubuntu2_armhf.deb ...
577s Unpacking libtiff6:armhf (4.5.1+git230720-4ubuntu2) ...
577s Selecting previously unselected package libproj25:armhf.
577s Preparing to unpack .../082-libproj25_9.4.0-1build2_armhf.deb ...
577s Unpacking libproj25:armhf (9.4.0-1build2) ...
577s Selecting previously unselected package libgeotiff5:armhf.
577s Preparing to unpack .../083-libgeotiff5_1.7.1-5build1_armhf.deb ...
577s Unpacking libgeotiff5:armhf (1.7.1-5build1) ...
577s Selecting previously unselected package libgif7:armhf.
577s Preparing to unpack .../084-libgif7_5.2.2-1ubuntu1_armhf.deb ...
577s Unpacking libgif7:armhf (5.2.2-1ubuntu1) ...
577s Selecting previously unselected package libsz2:armhf.
577s Preparing to unpack .../085-libsz2_1.1.3-1_armhf.deb ...
577s Unpacking libsz2:armhf (1.1.3-1) ...
577s Selecting previously unselected package libhdf4-0-alt:armhf.
577s Preparing to unpack .../086-libhdf4-0-alt_4.3.0-1_armhf.deb ...
577s Unpacking libhdf4-0-alt:armhf (4.3.0-1) ...
577s Selecting previously unselected package libhdf5-103-1t64:armhf.
577s Preparing to unpack .../087-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_armhf.deb ...
577s Unpacking libhdf5-103-1t64:armhf (1.10.10+repack-3.1ubuntu4) ...
577s Selecting previously unselected package libheif-plugin-aomdec:armhf.
577s Preparing to unpack .../088-libheif-plugin-aomdec_1.17.6-1ubuntu4_armhf.deb ...
577s Unpacking libheif-plugin-aomdec:armhf (1.17.6-1ubuntu4) ...
577s Selecting previously unselected package libheif-plugin-libde265:armhf.
577s Preparing to unpack .../089-libheif-plugin-libde265_1.17.6-1ubuntu4_armhf.deb ...
577s Unpacking libheif-plugin-libde265:armhf (1.17.6-1ubuntu4) ...
577s Selecting previously unselected package libheif1:armhf.
577s Preparing to unpack .../090-libheif1_1.17.6-1ubuntu4_armhf.deb ...
577s Unpacking libheif1:armhf (1.17.6-1ubuntu4) ...
577s Selecting previously unselected package liburiparser1:armhf.
577s Preparing to unpack .../091-liburiparser1_0.9.7+dfsg-2build1_armhf.deb ...
577s Unpacking liburiparser1:armhf (0.9.7+dfsg-2build1) ...
577s Selecting previously unselected package libkmlbase1t64:armhf.
577s Preparing to unpack .../092-libkmlbase1t64_1.3.0-12build1_armhf.deb ...
577s Unpacking libkmlbase1t64:armhf (1.3.0-12build1) ...
577s Selecting previously unselected package libkmldom1t64:armhf.
577s Preparing to unpack .../093-libkmldom1t64_1.3.0-12build1_armhf.deb ...
577s Unpacking libkmldom1t64:armhf (1.3.0-12build1) ...
577s Selecting previously unselected package libkmlengine1t64:armhf.
577s Preparing to unpack .../094-libkmlengine1t64_1.3.0-12build1_armhf.deb ...
577s Unpacking libkmlengine1t64:armhf (1.3.0-12build1) ...
577s Selecting previously unselected package mysql-common.
577s Preparing to unpack .../095-mysql-common_5.8+1.1.0build1_all.deb ...
577s Unpacking mysql-common (5.8+1.1.0build1) ...
577s Selecting previously unselected package libmysqlclient21:armhf.
577s Preparing to unpack .../096-libmysqlclient21_8.0.37-1_armhf.deb ...
577s Unpacking libmysqlclient21:armhf (8.0.37-1) ...
577s Selecting previously unselected package libhdf5-hl-100t64:armhf.
577s Preparing to unpack .../097-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_armhf.deb ...
577s Unpacking libhdf5-hl-100t64:armhf (1.10.10+repack-3.1ubuntu4) ...
577s Selecting previously unselected package libnetcdf19t64:armhf.
577s Preparing to unpack .../098-libnetcdf19t64_1%3a4.9.2-5ubuntu4_armhf.deb ...
577s Unpacking libnetcdf19t64:armhf (1:4.9.2-5ubuntu4) ...
577s Selecting previously unselected package libltdl7:armhf.
577s Preparing to unpack .../099-libltdl7_2.4.7-7build1_armhf.deb ...
577s Unpacking libltdl7:armhf (2.4.7-7build1) ...
577s Selecting previously unselected package libodbc2:armhf.
577s Preparing to unpack .../100-libodbc2_2.3.12-1build2_armhf.deb ...
577s Unpacking libodbc2:armhf (2.3.12-1build2) ...
577s Selecting previously unselected package unixodbc-common.
577s Preparing to unpack .../101-unixodbc-common_2.3.12-1build2_all.deb ...
577s Unpacking unixodbc-common (2.3.12-1build2) ...
577s Selecting previously unselected package libodbcinst2:armhf.
577s Preparing to unpack .../102-libodbcinst2_2.3.12-1build2_armhf.deb ...
577s Unpacking libodbcinst2:armhf (2.3.12-1build2) ...
577s Selecting previously unselected package libogdi4.1:armhf.
577s Preparing to unpack .../103-libogdi4.1_4.1.1+ds-4_armhf.deb ...
577s Unpacking libogdi4.1:armhf (4.1.1+ds-4) ...
577s Selecting previously unselected package libopenjp2-7:armhf.
577s Preparing to unpack .../104-libopenjp2-7_2.5.0-2build3_armhf.deb ...
577s Unpacking libopenjp2-7:armhf (2.5.0-2build3) ...
577s Selecting previously unselected package liblcms2-2:armhf.
577s Preparing to unpack .../105-liblcms2-2_2.14-2build1_armhf.deb ...
577s Unpacking liblcms2-2:armhf (2.14-2build1) ...
577s Selecting previously unselected package libpoppler134:armhf.
577s Preparing to unpack .../106-libpoppler134_24.02.0-1ubuntu9_armhf.deb ...
577s Unpacking libpoppler134:armhf (24.02.0-1ubuntu9) ...
577s Selecting previously unselected package libpq5:armhf.
577s Preparing to unpack .../107-libpq5_16.2-1ubuntu4_armhf.deb ...
577s Unpacking libpq5:armhf (16.2-1ubuntu4) ...
578s Selecting previously unselected package libqhull-r8.0:armhf.
578s Preparing to unpack .../108-libqhull-r8.0_2020.2-6build1_armhf.deb ...
578s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ...
578s Selecting previously unselected package librttopo1:armhf.
578s Preparing to unpack .../109-librttopo1_1.1.0-3build2_armhf.deb ...
578s Unpacking librttopo1:armhf (1.1.0-3build2) ...
578s Selecting previously unselected package libspatialite8t64:armhf.
578s Preparing to unpack .../110-libspatialite8t64_5.1.0-3build1_armhf.deb ...
578s Unpacking libspatialite8t64:armhf (5.1.0-3build1) ...
578s Selecting previously unselected package libxerces-c3.2t64:armhf.
578s Preparing to unpack .../111-libxerces-c3.2t64_3.2.4+debian-1.3_armhf.deb ...
578s Unpacking libxerces-c3.2t64:armhf (3.2.4+debian-1.3) ...
578s Selecting previously unselected package libgdal34t64:armhf.
578s Preparing to unpack .../112-libgdal34t64_3.8.5+dfsg-1_armhf.deb ...
578s Unpacking libgdal34t64:armhf (3.8.5+dfsg-1) ...
578s Selecting previously unselected package libgraphite2-3:armhf.
578s Preparing to unpack .../113-libgraphite2-3_1.3.14-2build1_armhf.deb ...
578s Unpacking libgraphite2-3:armhf (1.3.14-2build1) ...
578s Selecting previously unselected package libharfbuzz0b:armhf.
578s Preparing to unpack .../114-libharfbuzz0b_8.3.0-2build2_armhf.deb ...
578s Unpacking libharfbuzz0b:armhf (8.3.0-2build2) ...
578s Selecting previously unselected package x11-common.
578s Preparing to unpack .../115-x11-common_1%3a7.7+23ubuntu3_all.deb ...
578s Unpacking x11-common (1:7.7+23ubuntu3) ...
578s Selecting previously unselected package libice6:armhf.
578s Preparing to unpack .../116-libice6_2%3a1.0.10-1build3_armhf.deb ...
578s Unpacking libice6:armhf (2:1.0.10-1build3) ...
578s Selecting previously unselected package libicu-dev:armhf.
578s Preparing to unpack .../117-libicu-dev_74.2-1ubuntu3_armhf.deb ...
578s Unpacking libicu-dev:armhf (74.2-1ubuntu3) ...
578s Selecting previously unselected package libjpeg-turbo8-dev:armhf.
579s Preparing to unpack .../118-libjpeg-turbo8-dev_2.1.5-2ubuntu2_armhf.deb ...
579s Unpacking libjpeg-turbo8-dev:armhf (2.1.5-2ubuntu2) ...
579s Selecting previously unselected package libjpeg8-dev:armhf.
579s Preparing to unpack .../119-libjpeg8-dev_8c-2ubuntu11_armhf.deb ...
579s Unpacking libjpeg8-dev:armhf (8c-2ubuntu11) ...
579s Selecting previously unselected package libjpeg-dev:armhf.
579s Preparing to unpack .../120-libjpeg-dev_8c-2ubuntu11_armhf.deb ...
579s Unpacking libjpeg-dev:armhf (8c-2ubuntu11) ...
579s Selecting previously unselected package libjs-bootstrap.
579s Preparing to unpack .../121-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
579s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
579s Selecting previously unselected package libjs-popper.js.
579s Preparing to unpack .../122-libjs-popper.js_1.16.1+ds-6_all.deb ...
579s Unpacking libjs-popper.js (1.16.1+ds-6) ...
579s Selecting previously unselected package libjs-bootstrap4.
579s Preparing to unpack .../123-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
579s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
579s Selecting previously unselected package libjs-d3.
579s Preparing to unpack .../124-libjs-d3_3.5.17-4_all.deb ...
579s Unpacking libjs-d3 (3.5.17-4) ...
579s Selecting previously unselected package libjs-es5-shim.
579s Preparing to unpack .../125-libjs-es5-shim_4.6.7-2_all.deb ...
579s Unpacking libjs-es5-shim (4.6.7-2) ...
579s Selecting previously unselected package libjs-highlight.js.
579s Preparing to unpack .../126-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
579s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ...
579s Selecting previously unselected package libjs-jquery.
579s Preparing to unpack .../127-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
579s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
580s Selecting previously unselected package libjs-jquery-datatables.
580s Preparing to unpack .../128-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
580s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ...
580s Selecting previously unselected package libjs-sifter.js.
580s Preparing to unpack .../129-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
580s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ...
580s Selecting previously unselected package libjs-microplugin.js.
580s Preparing to unpack .../130-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
580s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ...
580s Selecting previously unselected package libjs-jquery-selectize.js.
580s Preparing to unpack .../131-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ...
580s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
580s Selecting previously unselected package libjs-jquery-ui.
580s Preparing to unpack .../132-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
580s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
580s Selecting previously unselected package libjs-json.
580s Preparing to unpack .../133-libjs-json_0~20221030+~1.0.8-1_all.deb ...
580s Unpacking libjs-json (0~20221030+~1.0.8-1) ...
580s Selecting previously unselected package libjs-prettify.
580s Preparing to unpack .../134-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ...
580s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ...
580s Selecting previously unselected package liblapack-dev:armhf.
580s Preparing to unpack .../135-liblapack-dev_3.12.0-3build1_armhf.deb ...
580s Unpacking liblapack-dev:armhf (3.12.0-3build1) ...
580s Selecting previously unselected package liblua5.4-0:armhf.
580s Preparing to unpack .../136-liblua5.4-0_5.4.6-3build2_armhf.deb ...
580s Unpacking liblua5.4-0:armhf (5.4.6-3build2) ...
580s Selecting previously unselected package libncurses-dev:armhf.
580s Preparing to unpack .../137-libncurses-dev_6.4+20240113-1ubuntu2_armhf.deb ...
580s Unpacking libncurses-dev:armhf (6.4+20240113-1ubuntu2) ...
580s Selecting previously unselected package libthai-data.
580s Preparing to unpack .../138-libthai-data_0.1.29-2build1_all.deb ...
580s Unpacking libthai-data (0.1.29-2build1) ...
580s Selecting previously unselected package libthai0:armhf.
580s Preparing to unpack .../139-libthai0_0.1.29-2build1_armhf.deb ...
580s Unpacking libthai0:armhf (0.1.29-2build1) ...
580s Selecting previously unselected package libpango-1.0-0:armhf.
580s Preparing to unpack .../140-libpango-1.0-0_1.52.2+ds-1_armhf.deb ...
580s Unpacking libpango-1.0-0:armhf (1.52.2+ds-1) ...
580s Selecting previously unselected package libpangoft2-1.0-0:armhf.
580s Preparing to unpack .../141-libpangoft2-1.0-0_1.52.2+ds-1_armhf.deb ...
580s Unpacking libpangoft2-1.0-0:armhf (1.52.2+ds-1) ...
580s Selecting previously unselected package libpangocairo-1.0-0:armhf.
580s Preparing to unpack .../142-libpangocairo-1.0-0_1.52.2+ds-1_armhf.deb ...
580s Unpacking libpangocairo-1.0-0:armhf (1.52.2+ds-1) ...
580s Selecting previously unselected package libpaper1:armhf.
580s Preparing to unpack .../143-libpaper1_1.1.29build1_armhf.deb ...
580s Unpacking libpaper1:armhf (1.1.29build1) ...
580s Selecting previously unselected package libpaper-utils.
580s Preparing to unpack .../144-libpaper-utils_1.1.29build1_armhf.deb ...
580s Unpacking libpaper-utils (1.1.29build1) ...
580s Selecting previously unselected package libpcre2-16-0:armhf.
580s Preparing to unpack .../145-libpcre2-16-0_10.42-4ubuntu2_armhf.deb ...
580s Unpacking libpcre2-16-0:armhf (10.42-4ubuntu2) ...
580s Selecting previously unselected package libpcre2-32-0:armhf.
580s Preparing to unpack .../146-libpcre2-32-0_10.42-4ubuntu2_armhf.deb ...
580s Unpacking libpcre2-32-0:armhf (10.42-4ubuntu2) ...
580s Selecting previously unselected package libpcre2-posix3:armhf.
580s Preparing to unpack .../147-libpcre2-posix3_10.42-4ubuntu2_armhf.deb ...
580s Unpacking libpcre2-posix3:armhf (10.42-4ubuntu2) ...
580s Selecting previously unselected package libpcre2-dev:armhf.
580s Preparing to unpack .../148-libpcre2-dev_10.42-4ubuntu2_armhf.deb ...
580s Unpacking libpcre2-dev:armhf (10.42-4ubuntu2) ...
580s Selecting previously unselected package libpkgconf3:armhf.
580s Preparing to unpack .../149-libpkgconf3_1.8.1-2build1_armhf.deb ...
580s Unpacking libpkgconf3:armhf (1.8.1-2build1) ...
580s Selecting previously unselected package zlib1g-dev:armhf.
580s Preparing to unpack .../150-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ...
580s Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ...
580s Selecting previously unselected package libpng-dev:armhf.
580s Preparing to unpack .../151-libpng-dev_1.6.43-5build1_armhf.deb ...
580s Unpacking libpng-dev:armhf (1.6.43-5build1) ...
580s Selecting previously unselected package libreadline-dev:armhf.
580s Preparing to unpack .../152-libreadline-dev_8.2-4build1_armhf.deb ...
580s Unpacking libreadline-dev:armhf (8.2-4build1) ...
580s Selecting previously unselected package libsm6:armhf.
580s Preparing to unpack .../153-libsm6_2%3a1.2.3-1build3_armhf.deb ...
580s Unpacking libsm6:armhf (2:1.2.3-1build3) ...
580s Selecting previously unselected package libtcl8.6:armhf.
580s Preparing to unpack .../154-libtcl8.6_8.6.14+dfsg-1build1_armhf.deb ...
580s Unpacking libtcl8.6:armhf (8.6.14+dfsg-1build1) ...
580s Selecting previously unselected package libxft2:armhf.
580s Preparing to unpack .../155-libxft2_2.3.6-1build1_armhf.deb ...
580s Unpacking libxft2:armhf (2.3.6-1build1) ...
580s Selecting previously unselected package libxss1:armhf.
580s Preparing to unpack .../156-libxss1_1%3a1.2.3-1build3_armhf.deb ...
580s Unpacking libxss1:armhf (1:1.2.3-1build3) ...
580s Selecting previously unselected package libtk8.6:armhf.
580s Preparing to unpack .../157-libtk8.6_8.6.14-1build1_armhf.deb ...
580s Unpacking libtk8.6:armhf (8.6.14-1build1) ...
580s Selecting previously unselected package libudunits2-data.
580s Preparing to unpack .../158-libudunits2-data_2.2.28-7build1_all.deb ...
580s Unpacking libudunits2-data (2.2.28-7build1) ...
580s Selecting previously unselected package libudunits2-0.
580s Preparing to unpack .../159-libudunits2-0_2.2.28-7build1_armhf.deb ...
580s Unpacking libudunits2-0 (2.2.28-7build1) ...
580s Selecting previously unselected package libxt6t64:armhf.
580s Preparing to unpack .../160-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ...
580s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ...
580s Selecting previously unselected package zip.
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580s Unpacking zip (3.0-13build1) ...
580s Selecting previously unselected package unzip.
580s Preparing to unpack .../162-unzip_6.0-28ubuntu4_armhf.deb ...
580s Unpacking unzip (6.0-28ubuntu4) ...
580s Selecting previously unselected package xdg-utils.
580s Preparing to unpack .../163-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
580s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
580s Selecting previously unselected package r-base-core.
580s Preparing to unpack .../164-r-base-core_4.4.0-2_armhf.deb ...
580s Unpacking r-base-core (4.4.0-2) ...
581s Selecting previously unselected package r-cran-littler.
581s Preparing to unpack .../165-r-cran-littler_0.3.20-1_armhf.deb ...
581s Unpacking r-cran-littler (0.3.20-1) ...
581s Selecting previously unselected package littler.
581s Preparing to unpack .../166-littler_0.3.20-1_all.deb ...
581s Unpacking littler (0.3.20-1) ...
581s Selecting previously unselected package node-bootstrap-sass.
581s Preparing to unpack .../167-node-bootstrap-sass_3.4.3-2_all.deb ...
581s Unpacking node-bootstrap-sass (3.4.3-2) ...
581s Selecting previously unselected package node-html5shiv.
581s Preparing to unpack .../168-node-html5shiv_3.7.3+dfsg-5_all.deb ...
581s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
581s Selecting previously unselected package node-normalize.css.
581s Preparing to unpack .../169-node-normalize.css_8.0.1-5_all.deb ...
581s Unpacking node-normalize.css (8.0.1-5) ...
581s Selecting previously unselected package pandoc-data.
581s Preparing to unpack .../170-pandoc-data_3.1.3-2build2_all.deb ...
581s Unpacking pandoc-data (3.1.3-2build2) ...
581s Selecting previously unselected package pandoc.
581s Preparing to unpack .../171-pandoc_3.1.3+ds-3build1_armhf.deb ...
581s Unpacking pandoc (3.1.3+ds-3build1) ...
582s Selecting previously unselected package liblzma-dev:armhf.
582s Preparing to unpack .../172-liblzma-dev_5.6.1+really5.4.5-1_armhf.deb ...
582s Unpacking liblzma-dev:armhf (5.6.1+really5.4.5-1) ...
582s Selecting previously unselected package pkgconf-bin.
582s Preparing to unpack .../173-pkgconf-bin_1.8.1-2build1_armhf.deb ...
582s Unpacking pkgconf-bin (1.8.1-2build1) ...
582s Selecting previously unselected package pkgconf:armhf.
582s Preparing to unpack .../174-pkgconf_1.8.1-2build1_armhf.deb ...
582s Unpacking pkgconf:armhf (1.8.1-2build1) ...
582s Selecting previously unselected package libtirpc-dev:armhf.
582s Preparing to unpack .../175-libtirpc-dev_1.3.4+ds-1.3_armhf.deb ...
582s Unpacking libtirpc-dev:armhf (1.3.4+ds-1.3) ...
582s Selecting previously unselected package r-base-dev.
582s Preparing to unpack .../176-r-base-dev_4.4.0-2_all.deb ...
582s Unpacking r-base-dev (4.4.0-2) ...
582s Selecting previously unselected package pkg-r-autopkgtest.
582s Preparing to unpack .../177-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
582s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
582s Selecting previously unselected package r-cran-abind.
582s Preparing to unpack .../178-r-cran-abind_1.4-5-2_all.deb ...
582s Unpacking r-cran-abind (1.4-5-2) ...
582s Selecting previously unselected package r-cran-sys.
582s Preparing to unpack .../179-r-cran-sys_3.4.2-1_armhf.deb ...
582s Unpacking r-cran-sys (3.4.2-1) ...
582s Selecting previously unselected package r-cran-askpass.
582s Preparing to unpack .../180-r-cran-askpass_1.2.0-1_armhf.deb ...
582s Unpacking r-cran-askpass (1.2.0-1) ...
582s Selecting previously unselected package r-cran-base64enc.
582s Preparing to unpack .../181-r-cran-base64enc_0.1-3-3_armhf.deb ...
582s Unpacking r-cran-base64enc (0.1-3-3) ...
583s Selecting previously unselected package r-cran-bit.
583s Preparing to unpack .../182-r-cran-bit_4.0.5-1_armhf.deb ...
583s Unpacking r-cran-bit (4.0.5-1) ...
583s Selecting previously unselected package r-cran-bit64.
583s Preparing to unpack .../183-r-cran-bit64_4.0.5-1_armhf.deb ...
583s Unpacking r-cran-bit64 (4.0.5-1) ...
583s Selecting previously unselected package r-cran-rlang.
583s Preparing to unpack .../184-r-cran-rlang_1.1.3-1_armhf.deb ...
583s Unpacking r-cran-rlang (1.1.3-1) ...
583s Selecting previously unselected package r-cran-cli.
583s Preparing to unpack .../185-r-cran-cli_3.6.2-1_armhf.deb ...
583s Unpacking r-cran-cli (3.6.2-1) ...
586s Selecting previously unselected package r-cran-glue.
586s Preparing to unpack .../186-r-cran-glue_1.7.0-1_armhf.deb ...
586s Unpacking r-cran-glue (1.7.0-1) ...
586s Selecting previously unselected package r-cran-lifecycle.
586s Preparing to unpack .../187-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
586s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
586s Selecting previously unselected package r-cran-vctrs.
586s Preparing to unpack .../188-r-cran-vctrs_0.6.5-1_armhf.deb ...
586s Unpacking r-cran-vctrs (0.6.5-1) ...
586s Selecting previously unselected package r-cran-blob.
586s Preparing to unpack .../189-r-cran-blob_1.2.4-1_all.deb ...
586s Unpacking r-cran-blob (1.2.4-1) ...
586s Selecting previously unselected package r-cran-brio.
586s Preparing to unpack .../190-r-cran-brio_1.1.5-1_armhf.deb ...
586s Unpacking r-cran-brio (1.1.5-1) ...
586s Selecting previously unselected package r-cran-fastmap.
586s Preparing to unpack .../191-r-cran-fastmap_1.1.1-1_armhf.deb ...
586s Unpacking r-cran-fastmap (1.1.1-1) ...
586s Selecting previously unselected package r-cran-cachem.
586s Preparing to unpack .../192-r-cran-cachem_1.0.8-1_armhf.deb ...
586s Unpacking r-cran-cachem (1.0.8-1) ...
586s Selecting previously unselected package r-cran-digest.
586s Preparing to unpack .../193-r-cran-digest_0.6.35-1_armhf.deb ...
586s Unpacking r-cran-digest (0.6.35-1) ...
586s Selecting previously unselected package r-cran-htmltools.
586s Preparing to unpack .../194-r-cran-htmltools_0.5.8.1-1_armhf.deb ...
586s Unpacking r-cran-htmltools (0.5.8.1-1) ...
586s Selecting previously unselected package r-cran-jquerylib.
586s Preparing to unpack .../195-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
586s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
586s Selecting previously unselected package r-cran-jsonlite.
586s Preparing to unpack .../196-r-cran-jsonlite_1.8.8+dfsg-1_armhf.deb ...
586s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
586s Selecting previously unselected package r-cran-memoise.
586s Preparing to unpack .../197-r-cran-memoise_2.0.1-1_all.deb ...
586s Unpacking r-cran-memoise (2.0.1-1) ...
586s Selecting previously unselected package r-cran-mime.
586s Preparing to unpack .../198-r-cran-mime_0.12-2_armhf.deb ...
586s Unpacking r-cran-mime (0.12-2) ...
586s Selecting previously unselected package r-cran-fs.
586s Preparing to unpack .../199-r-cran-fs_1.6.3+dfsg-1build2_armhf.deb ...
586s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ...
586s Selecting previously unselected package r-cran-r6.
586s Preparing to unpack .../200-r-cran-r6_2.5.1-1_all.deb ...
586s Unpacking r-cran-r6 (2.5.1-1) ...
586s Selecting previously unselected package r-cran-rappdirs.
586s Preparing to unpack .../201-r-cran-rappdirs_0.3.3-1_armhf.deb ...
586s Unpacking r-cran-rappdirs (0.3.3-1) ...
586s Selecting previously unselected package r-cran-sass.
586s Preparing to unpack .../202-r-cran-sass_0.4.9+dfsg-1_armhf.deb ...
586s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
586s Selecting previously unselected package r-cran-bslib.
586s Preparing to unpack .../203-r-cran-bslib_0.7.0+dfsg-1_all.deb ...
586s Unpacking r-cran-bslib (0.7.0+dfsg-1) ...
586s Selecting previously unselected package r-cran-ps.
586s Preparing to unpack .../204-r-cran-ps_1.7.6-1_armhf.deb ...
586s Unpacking r-cran-ps (1.7.6-1) ...
586s Selecting previously unselected package r-cran-processx.
586s Preparing to unpack .../205-r-cran-processx_3.8.3-1_armhf.deb ...
586s Unpacking r-cran-processx (3.8.3-1) ...
586s Selecting previously unselected package r-cran-callr.
586s Preparing to unpack .../206-r-cran-callr_3.7.6-1_all.deb ...
586s Unpacking r-cran-callr (3.7.6-1) ...
586s Selecting previously unselected package r-cran-mass.
586s Preparing to unpack .../207-r-cran-mass_7.3-60.0.1-1_armhf.deb ...
586s Unpacking r-cran-mass (7.3-60.0.1-1) ...
586s Selecting previously unselected package r-cran-class.
586s Preparing to unpack .../208-r-cran-class_7.3-22-2build1_armhf.deb ...
586s Unpacking r-cran-class (7.3-22-2build1) ...
586s Selecting previously unselected package r-cran-proxy.
586s Preparing to unpack .../209-r-cran-proxy_0.4-27-1_armhf.deb ...
586s Unpacking r-cran-proxy (0.4-27-1) ...
586s Selecting previously unselected package r-cran-e1071.
586s Preparing to unpack .../210-r-cran-e1071_1.7-14-1_armhf.deb ...
586s Unpacking r-cran-e1071 (1.7-14-1) ...
586s Selecting previously unselected package r-cran-kernsmooth.
586s Preparing to unpack .../211-r-cran-kernsmooth_2.23-24-1_armhf.deb ...
586s Unpacking r-cran-kernsmooth (2.23-24-1) ...
586s Selecting previously unselected package r-cran-classint.
586s Preparing to unpack .../212-r-cran-classint_0.4-10+dfsg-1_armhf.deb ...
586s Unpacking r-cran-classint (0.4-10+dfsg-1) ...
586s Selecting previously unselected package r-cran-colorspace.
586s Preparing to unpack .../213-r-cran-colorspace_2.1-0+dfsg-1_armhf.deb ...
586s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
586s Selecting previously unselected package r-cran-commonmark.
586s Preparing to unpack .../214-r-cran-commonmark_1.9.1-1_armhf.deb ...
586s Unpacking r-cran-commonmark (1.9.1-1) ...
586s Selecting previously unselected package r-cran-lazyeval.
586s Preparing to unpack .../215-r-cran-lazyeval_0.2.2-1build1_armhf.deb ...
586s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
586s Selecting previously unselected package r-cran-rex.
586s Preparing to unpack .../216-r-cran-rex_1.2.1-1_all.deb ...
586s Unpacking r-cran-rex (1.2.1-1) ...
586s Selecting previously unselected package r-cran-curl.
586s Preparing to unpack .../217-r-cran-curl_5.2.0+dfsg-1build2_armhf.deb ...
586s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ...
586s Selecting previously unselected package r-cran-openssl.
586s Preparing to unpack .../218-r-cran-openssl_2.1.1+dfsg-2build2_armhf.deb ...
586s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ...
586s Selecting previously unselected package r-cran-httr.
586s Preparing to unpack .../219-r-cran-httr_1.4.7+dfsg-1_all.deb ...
586s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
586s Selecting previously unselected package r-cran-crayon.
586s Preparing to unpack .../220-r-cran-crayon_1.5.2-1_all.deb ...
586s Unpacking r-cran-crayon (1.5.2-1) ...
586s Selecting previously unselected package r-cran-withr.
586s Preparing to unpack .../221-r-cran-withr_2.5.0-1_all.deb ...
586s Unpacking r-cran-withr (2.5.0-1) ...
586s Selecting previously unselected package r-cran-yaml.
586s Preparing to unpack .../222-r-cran-yaml_2.3.8-2_armhf.deb ...
586s Unpacking r-cran-yaml (2.3.8-2) ...
586s Selecting previously unselected package r-cran-covr.
586s Preparing to unpack .../223-r-cran-covr_3.6.4+dfsg-1_armhf.deb ...
586s Unpacking r-cran-covr (3.6.4+dfsg-1) ...
586s Selecting previously unselected package r-cran-cpp11.
586s Preparing to unpack .../224-r-cran-cpp11_0.4.7-1_all.deb ...
586s Unpacking r-cran-cpp11 (0.4.7-1) ...
586s Selecting previously unselected package r-cran-dbi.
586s Preparing to unpack .../225-r-cran-dbi_1.2.2-1_all.deb ...
586s Unpacking r-cran-dbi (1.2.2-1) ...
586s Selecting previously unselected package r-cran-deldir.
586s Preparing to unpack .../226-r-cran-deldir_2.0-4-1build1_armhf.deb ...
586s Unpacking r-cran-deldir (2.0-4-1build1) ...
586s Selecting previously unselected package r-cran-desc.
586s Preparing to unpack .../227-r-cran-desc_1.4.3-1_all.deb ...
586s Unpacking r-cran-desc (1.4.3-1) ...
586s Selecting previously unselected package r-cran-diffobj.
586s Preparing to unpack .../228-r-cran-diffobj_0.3.5-1_armhf.deb ...
586s Unpacking r-cran-diffobj (0.3.5-1) ...
586s Selecting previously unselected package r-cran-generics.
586s Preparing to unpack .../229-r-cran-generics_0.1.3-1_all.deb ...
586s Unpacking r-cran-generics (0.1.3-1) ...
586s Selecting previously unselected package r-cran-magrittr.
586s Preparing to unpack .../230-r-cran-magrittr_2.0.3-1_armhf.deb ...
586s Unpacking r-cran-magrittr (2.0.3-1) ...
586s Selecting previously unselected package r-cran-fansi.
586s Preparing to unpack .../231-r-cran-fansi_1.0.5-1_armhf.deb ...
586s Unpacking r-cran-fansi (1.0.5-1) ...
586s Selecting previously unselected package r-cran-utf8.
586s Preparing to unpack .../232-r-cran-utf8_1.2.4-1_armhf.deb ...
586s Unpacking r-cran-utf8 (1.2.4-1) ...
586s Selecting previously unselected package r-cran-pillar.
586s Preparing to unpack .../233-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
586s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
586s Selecting previously unselected package r-cran-pkgconfig.
586s Preparing to unpack .../234-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
586s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
586s Selecting previously unselected package r-cran-tibble.
586s Preparing to unpack .../235-r-cran-tibble_3.2.1+dfsg-2_armhf.deb ...
586s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
586s Selecting previously unselected package r-cran-tidyselect.
586s Preparing to unpack .../236-r-cran-tidyselect_1.2.0+dfsg-1_armhf.deb ...
586s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
586s Selecting previously unselected package r-cran-dplyr.
586s Preparing to unpack .../237-r-cran-dplyr_1.1.4-1_armhf.deb ...
586s Unpacking r-cran-dplyr (1.1.4-1) ...
586s Selecting previously unselected package r-cran-evaluate.
586s Preparing to unpack .../238-r-cran-evaluate_0.23-1_all.deb ...
586s Unpacking r-cran-evaluate (0.23-1) ...
586s Selecting previously unselected package r-cran-farver.
586s Preparing to unpack .../239-r-cran-farver_2.1.1-2_armhf.deb ...
586s Unpacking r-cran-farver (2.1.1-2) ...
586s Selecting previously unselected package r-cran-fontawesome.
586s Preparing to unpack .../240-r-cran-fontawesome_0.5.2-1_all.deb ...
586s Unpacking r-cran-fontawesome (0.5.2-1) ...
586s Selecting previously unselected package r-cran-gtable.
586s Preparing to unpack .../241-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
586s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
586s Selecting previously unselected package r-cran-isoband.
586s Preparing to unpack .../242-r-cran-isoband_0.2.7-1_armhf.deb ...
586s Unpacking r-cran-isoband (0.2.7-1) ...
586s Selecting previously unselected package r-cran-lattice.
586s Preparing to unpack .../243-r-cran-lattice_0.22-6-1_armhf.deb ...
586s Unpacking r-cran-lattice (0.22-6-1) ...
586s Selecting previously unselected package r-cran-nlme.
586s Preparing to unpack .../244-r-cran-nlme_3.1.164-1build1_armhf.deb ...
586s Unpacking r-cran-nlme (3.1.164-1build1) ...
586s Selecting previously unselected package r-cran-matrix.
586s Preparing to unpack .../245-r-cran-matrix_1.6-5-1_armhf.deb ...
586s Unpacking r-cran-matrix (1.6-5-1) ...
586s Selecting previously unselected package r-cran-mgcv.
586s Preparing to unpack .../246-r-cran-mgcv_1.9-1-1_armhf.deb ...
586s Unpacking r-cran-mgcv (1.9-1-1) ...
586s Selecting previously unselected package r-cran-labeling.
586s Preparing to unpack .../247-r-cran-labeling_0.4.3-1_all.deb ...
586s Unpacking r-cran-labeling (0.4.3-1) ...
586s Selecting previously unselected package r-cran-munsell.
586s Preparing to unpack .../248-r-cran-munsell_0.5.0-2build1_all.deb ...
586s Unpacking r-cran-munsell (0.5.0-2build1) ...
586s Selecting previously unselected package r-cran-rcolorbrewer.
586s Preparing to unpack .../249-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ...
586s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
586s Selecting previously unselected package r-cran-viridislite.
586s Preparing to unpack .../250-r-cran-viridislite_0.4.2-2_all.deb ...
586s Unpacking r-cran-viridislite (0.4.2-2) ...
586s Selecting previously unselected package r-cran-scales.
587s Preparing to unpack .../251-r-cran-scales_1.3.0-1_all.deb ...
587s Unpacking r-cran-scales (1.3.0-1) ...
587s Selecting previously unselected package r-cran-ggplot2.
587s Preparing to unpack .../252-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
587s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
587s Selecting previously unselected package r-cran-goftest.
587s Preparing to unpack .../253-r-cran-goftest_1.2-3-1_armhf.deb ...
587s Unpacking r-cran-goftest (1.2-3-1) ...
587s Selecting previously unselected package r-cran-xfun.
587s Preparing to unpack .../254-r-cran-xfun_0.44+dfsg-1_armhf.deb ...
587s Unpacking r-cran-xfun (0.44+dfsg-1) ...
587s Selecting previously unselected package r-cran-highr.
587s Preparing to unpack .../255-r-cran-highr_0.10+dfsg-2_all.deb ...
587s Unpacking r-cran-highr (0.10+dfsg-2) ...
587s Selecting previously unselected package r-cran-pkgkitten.
587s Preparing to unpack .../256-r-cran-pkgkitten_0.2.3-1_all.deb ...
587s Unpacking r-cran-pkgkitten (0.2.3-1) ...
587s Selecting previously unselected package r-cran-rcpp.
587s Preparing to unpack .../257-r-cran-rcpp_1.0.12-1_armhf.deb ...
587s Unpacking r-cran-rcpp (1.0.12-1) ...
587s Selecting previously unselected package r-cran-later.
587s Preparing to unpack .../258-r-cran-later_1.3.2+dfsg-1_armhf.deb ...
587s Unpacking r-cran-later (1.3.2+dfsg-1) ...
587s Selecting previously unselected package r-cran-promises.
590s Preparing to unpack .../259-r-cran-promises_1.3.0+dfsg-1_armhf.deb ...
590s Unpacking r-cran-promises (1.3.0+dfsg-1) ...
590s Selecting previously unselected package r-cran-httpuv.
590s Preparing to unpack .../260-r-cran-httpuv_1.6.15+dfsg-1_armhf.deb ...
590s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ...
590s Selecting previously unselected package libjs-mathjax.
590s Preparing to unpack .../261-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
590s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
590s Selecting previously unselected package r-cran-knitr.
590s Preparing to unpack .../262-r-cran-knitr_1.46+dfsg-1_all.deb ...
590s Unpacking r-cran-knitr (1.46+dfsg-1) ...
590s Selecting previously unselected package r-cran-units.
590s Preparing to unpack .../263-r-cran-units_0.8-5+dfsg-1_armhf.deb ...
590s Unpacking r-cran-units (0.8-5+dfsg-1) ...
590s Selecting previously unselected package r-cran-wk.
590s Preparing to unpack .../264-r-cran-wk_0.9.1-1_armhf.deb ...
590s Unpacking r-cran-wk (0.9.1-1) ...
590s Selecting previously unselected package r-cran-s2.
590s Preparing to unpack .../265-r-cran-s2_1.1.6-1build2_armhf.deb ...
590s Unpacking r-cran-s2 (1.1.6-1build2) ...
590s Selecting previously unselected package r-cran-sf.
590s Preparing to unpack .../266-r-cran-sf_1.0-16+dfsg-1_armhf.deb ...
590s Unpacking r-cran-sf (1.0-16+dfsg-1) ...
590s Selecting previously unselected package r-cran-lwgeom.
590s Preparing to unpack .../267-r-cran-lwgeom_0.2-13-3build2_armhf.deb ...
590s Unpacking r-cran-lwgeom (0.2-13-3build2) ...
590s Selecting previously unselected package r-cran-maps.
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590s Selecting previously unselected package r-cran-pbapply.
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590s Selecting previously unselected package r-cran-polyclip.
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590s Selecting previously unselected package r-cran-praise.
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595s Setting up r-cran-crayon (1.5.2-1) ...
595s Setting up r-cran-labeling (0.4.3-1) ...
595s Setting up r-cran-sourcetools (0.1.7-1-1) ...
595s Setting up r-cran-lattice (0.22-6-1) ...
595s Setting up r-cran-ps (1.7.6-1) ...
595s Setting up r-cran-nlme (3.1.164-1build1) ...
595s Setting up r-cran-farver (2.1.1-2) ...
595s Setting up r-cran-pbapply (1.7-2-1) ...
595s Setting up r-cran-spatstat.utils (3.0-4-1) ...
595s Setting up g++ (4:13.2.0-7ubuntu1) ...
595s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
595s Setting up r-cran-viridislite (0.4.2-2) ...
595s Setting up build-essential (12.10ubuntu1) ...
595s Setting up r-cran-tensor (1.5-4) ...
595s Setting up r-cran-lazyeval (0.2.2-1build1) ...
595s Setting up r-cran-wk (0.9.1-1) ...
595s Setting up r-cran-commonmark (1.9.1-1) ...
595s Setting up r-cran-proxy (0.4-27-1) ...
595s Setting up r-cran-r6 (2.5.1-1) ...
595s Setting up r-cran-pkgkitten (0.2.3-1) ...
595s Setting up r-cran-magrittr (2.0.3-1) ...
595s Setting up r-cran-rappdirs (0.3.3-1) ...
595s Setting up r-cran-littler (0.3.20-1) ...
595s Setting up r-cran-fs (1.6.3+dfsg-1build2) ...
595s Setting up r-cran-rcpp (1.0.12-1) ...
595s Setting up r-cran-curl (5.2.0+dfsg-1build2) ...
595s Setting up r-cran-brio (1.1.5-1) ...
595s Setting up r-cran-diffobj (0.3.5-1) ...
595s Setting up r-cran-maps (3.4.2-1) ...
595s Setting up r-cran-rlang (1.1.3-1) ...
595s Setting up littler (0.3.20-1) ...
595s Setting up r-cran-xfun (0.44+dfsg-1) ...
595s Setting up r-cran-sys (3.4.2-1) ...
595s Setting up r-cran-plogr (0.2.0-3build1) ...
595s Setting up r-cran-withr (2.5.0-1) ...
595s Setting up r-cran-processx (3.8.3-1) ...
595s Setting up r-cran-mime (0.12-2) ...
595s Setting up r-cran-praise (1.0.0-4build1) ...
595s Setting up r-cran-generics (0.1.3-1) ...
595s Setting up r-cran-base64enc (0.1-3-3) ...
595s Setting up r-cran-abind (1.4-5-2) ...
595s Setting up r-cran-s2 (1.1.6-1build2) ...
595s Setting up r-cran-digest (0.6.35-1) ...
595s Setting up r-cran-yaml (2.3.8-2) ...
595s Setting up r-cran-evaluate (0.23-1) ...
595s Setting up r-cran-dbi (1.2.2-1) ...
595s Setting up r-cran-highr (0.10+dfsg-2) ...
595s Setting up r-cran-fansi (1.0.5-1) ...
595s Setting up r-cran-mass (7.3-60.0.1-1) ...
595s Setting up r-cran-glue (1.7.0-1) ...
595s Setting up r-cran-bit (4.0.5-1) ...
595s Setting up r-cran-xtable (1:1.8-4-2) ...
595s Setting up r-cran-polyclip (1.10-6-1) ...
595s Setting up r-cran-cli (3.6.2-1) ...
595s Setting up gfortran (4:13.2.0-7ubuntu1) ...
595s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
595s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
595s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
595s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
595s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
595s Setting up r-cran-rprojroot (2.0.4-1) ...
595s Setting up r-cran-bit64 (4.0.5-1) ...
595s Setting up r-cran-deldir (2.0-4-1build1) ...
595s Setting up r-cran-goftest (1.2-3-1) ...
595s Setting up r-cran-askpass (1.2.0-1) ...
595s Setting up r-cran-fastmap (1.1.1-1) ...
595s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
595s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
595s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
595s Setting up r-cran-utf8 (1.2.4-1) ...
595s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
595s Setting up r-cran-stringi (1.8.3-1) ...
595s Setting up r-cran-rex (1.2.1-1) ...
595s Setting up r-cran-cpp11 (0.4.7-1) ...
595s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
595s Setting up r-cran-isoband (0.2.7-1) ...
595s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
595s Setting up r-cran-units (0.8-5+dfsg-1) ...
595s Setting up r-cran-later (1.3.2+dfsg-1) ...
595s Setting up r-cran-matrix (1.6-5-1) ...
595s Setting up r-cran-spatstat.sparse (3.0-3-1) ...
595s Setting up r-cran-htmltools (0.5.8.1-1) ...
595s Setting up r-cran-tinytex (0.49-1) ...
595s Setting up r-cran-kernsmooth (2.23-24-1) ...
595s Setting up r-cran-knitr (1.46+dfsg-1) ...
595s Setting up r-cran-mgcv (1.9-1-1) ...
595s Setting up r-cran-rpostgresql (0.7-6+dfsg-1) ...
595s Setting up r-cran-cachem (1.0.8-1) ...
595s Setting up r-cran-sass (0.4.9+dfsg-1) ...
595s Setting up r-cran-vctrs (0.6.5-1) ...
595s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
595s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ...
595s Setting up r-base-dev (4.4.0-2) ...
595s Setting up r-cran-stringr (1.5.1-1) ...
595s Setting up r-cran-class (7.3-22-2build1) ...
595s Setting up r-cran-callr (3.7.6-1) ...
595s Setting up r-cran-desc (1.4.3-1) ...
595s Setting up r-cran-munsell (0.5.0-2build1) ...
595s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
595s Setting up r-cran-fontawesome (0.5.2-1) ...
595s Setting up r-cran-survival (3.5-8-1) ...
595s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
595s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
595s Setting up r-cran-httr (1.4.7+dfsg-1) ...
595s Setting up r-cran-scales (1.3.0-1) ...
595s Setting up r-cran-memoise (2.0.1-1) ...
595s Setting up r-cran-covr (3.6.4+dfsg-1) ...
595s Setting up r-cran-promises (1.3.0+dfsg-1) ...
595s Setting up r-cran-purrr (1.0.2-1) ...
595s Setting up r-cran-e1071 (1.7-14-1) ...
595s Setting up r-cran-spatstat.data (3.0-4-1) ...
595s Setting up r-cran-blob (1.2.4-1) ...
595s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
595s Setting up r-cran-spatstat.geom (3.2-9-1) ...
595s Setting up r-cran-pkgbuild (1.4.3-1) ...
595s Setting up r-cran-dplyr (1.1.4-1) ...
595s Setting up r-cran-rsqlite (2.3.4-1) ...
595s Setting up r-cran-pkgload (1.3.4-1) ...
595s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
595s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
595s Setting up r-cran-rematch2 (2.1.2-2build1) ...
595s Setting up r-cran-rpart (4.1.23-1build1) ...
595s Setting up r-cran-spatstat.random (3.2-3-1) ...
595s Setting up r-cran-classint (0.4-10+dfsg-1) ...
595s Setting up r-cran-bslib (0.7.0+dfsg-1) ...
595s Setting up r-cran-spatstat.explore (3.2-5-1) ...
595s Setting up r-cran-waldo (0.5.2-1build1) ...
595s Setting up r-cran-tidyr (1.3.1-1) ...
595s Setting up r-cran-spatstat.model (3.2-11-1) ...
595s Setting up r-cran-shiny (1.8.1.1+dfsg-1) ...
595s Setting up r-cran-testthat (3.2.1-1) ...
595s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
595s Setting up r-cran-spatstat.linnet (3.1-5-1) ...
595s Setting up r-cran-spatstat (3.0-7-1) ...
595s Setting up libheif-plugin-aomdec:armhf (1.17.6-1ubuntu4) ...
595s Setting up libheif-plugin-libde265:armhf (1.17.6-1ubuntu4) ...
595s Setting up libheif1:armhf (1.17.6-1ubuntu4) ...
595s Setting up libgdal34t64:armhf (3.8.5+dfsg-1) ...
595s Setting up r-cran-terra (1.7-65-1build2) ...
595s Setting up r-cran-sf (1.0-16+dfsg-1) ...
595s Setting up r-cran-stars (0.6-4-1) ...
595s Setting up r-cran-raster (3.6-26-1) ...
595s Setting up r-cran-lwgeom (0.2-13-3build2) ...
595s Setting up autopkgtest-satdep (0) ...
595s Processing triggers for libc-bin (2.39-0ubuntu8.1) ...
595s Processing triggers for man-db (2.12.1-1) ...
596s Processing triggers for install-info (7.1-3build2) ...
644s (Reading database ... 83432 files and directories currently installed.)
644s Removing autopkgtest-satdep (0) ...
658s autopkgtest [08:46:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
658s autopkgtest [08:46:39]: test pkg-r-autopkgtest: [-----------------------
660s Test: Try to load the R library sf
660s 
660s R version 4.4.0 (2024-04-24) -- "Puppy Cup"
660s Copyright (C) 2024 The R Foundation for Statistical Computing
660s Platform: arm-unknown-linux-gnueabihf (32-bit)
660s 
660s R is free software and comes with ABSOLUTELY NO WARRANTY.
660s You are welcome to redistribute it under certain conditions.
660s Type 'license()' or 'licence()' for distribution details.
660s 
660s R is a collaborative project with many contributors.
660s Type 'contributors()' for more information and
660s 'citation()' on how to cite R or R packages in publications.
660s 
660s Type 'demo()' for some demos, 'help()' for on-line help, or
660s 'help.start()' for an HTML browser interface to help.
660s Type 'q()' to quit R.
660s 
661s > library('sf')
661s Linking to GEOS 3.12.1, GDAL 3.8.5, PROJ 9.4.0; sf_use_s2() is TRUE
661s > 
661s > 
661s Other tests are currently unsupported!
661s They will be progressively added.
662s autopkgtest [08:46:43]: test pkg-r-autopkgtest: -----------------------]
666s pkg-r-autopkgtest    PASS
666s autopkgtest [08:46:47]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
670s autopkgtest [08:46:51]: @@@@@@@@@@@@@@@@@@@@ summary
670s run-unit-test        PASS
670s pkg-r-autopkgtest    PASS