0s autopkgtest [05:19:58]: starting date and time: 2024-06-08 05:19:58+0000 0s autopkgtest [05:19:58]: git checkout: 433ed4c Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [05:19:58]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.weir3dsp/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade qiime --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- lxd -r lxd-armhf-10.145.243.183 lxd-armhf-10.145.243.183:autopkgtest/ubuntu/oracular/armhf 26s autopkgtest [05:20:24]: testbed dpkg architecture: armhf 28s autopkgtest [05:20:26]: testbed apt version: 2.9.3 28s autopkgtest [05:20:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 39s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 40s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 40s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 40s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [327 kB] 40s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 40s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [35.4 kB] 40s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1860 B] 40s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [238 kB] 40s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1768 B] 40s Fetched 768 kB in 1s (862 kB/s) 40s Reading package lists... 56s tee: /proc/self/fd/2: Permission denied 78s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 78s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 79s Reading package lists... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 80s Calculating upgrade... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 85s autopkgtest [05:21:23]: rebooting testbed after setup commands that affected boot 124s autopkgtest [05:22:02]: testbed running kernel: Linux 6.5.0-35-generic #35~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue May 7 11:19:33 UTC 2 150s autopkgtest [05:22:28]: @@@@@@@@@@@@@@@@@@@@ apt-source qiime 161s Get:1 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (dsc) [2597 B] 161s Get:2 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (tar) [621 kB] 161s Get:3 http://ftpmaster.internal/ubuntu oracular/universe qiime 2024.2.0-1ubuntu1 (diff) [17.9 kB] 161s gpgv: Signature made Mon Jun 3 14:49:39 2024 UTC 161s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 161s gpgv: issuer "athos.ribeiro@canonical.com" 161s gpgv: Can't check signature: No public key 161s dpkg-source: warning: cannot verify inline signature for ./qiime_2024.2.0-1ubuntu1.dsc: no acceptable signature found 161s autopkgtest [05:22:39]: testing package qiime version 2024.2.0-1ubuntu1 163s autopkgtest [05:22:41]: build not needed 165s autopkgtest [05:22:43]: test run-unit-test: preparing testbed 174s Reading package lists... 175s Building dependency tree... 175s Reading state information... 175s Starting pkgProblemResolver with broken count: 0 175s Starting 2 pkgProblemResolver with broken count: 0 175s Done 176s The following additional packages will be installed: 176s fonts-glyphicons-halflings javascript-common libblas3 libgfortran5 176s libjs-bootstrap libjs-jquery libjs-popper.js liblapack3 libnorm1t64 176s libpgm-5.3-0t64 libsodium23 libxslt1.1 libzmq5 176s node-fortawesome-fontawesome-free python3-appdirs python3-bcrypt 176s python3-bibtexparser python3-click python3-colorama python3-dateutil 176s python3-decorator python3-dill python3-filelock python3-flask 176s python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 176s python3-greenlet python3-iniconfig python3-itsdangerous python3-lxml 176s python3-nacl python3-networkx python3-numpy python3-packaging python3-pandas 176s python3-pandas-lib python3-paramiko python3-parsl python3-pluggy 176s python3-psutil python3-public python3-py python3-pytest python3-setproctitle 176s python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard 176s python3-tz python3-tzlocal python3-werkzeug python3-zmq qiime 176s Suggested packages: 176s apache2 | lighttpd | httpd python3-objgraph python3-dotenv python-flask-doc 176s python-flufl.lock-doc python-greenlet-dev python-greenlet-doc 176s python-lxml-doc python-nacl-doc python3-gdal python3-matplotlib 176s python3-pydot python3-pygraphviz python3-scipy gcc gfortran python-numpy-doc 176s python3-dev python-pandas-doc python3-statsmodels python3-gssapi 176s python3-invoke python-public-doc subversion python-sqlalchemy-doc 176s python3-fdb python3-pymssql python3-mysqldb python3-psycopg2 python3-asyncpg 176s python3-aiosqlite ipython3 python-werkzeug-doc python3-watchdog 176s Recommended packages: 176s node-jquery python3-asgiref python3-simplejson python3-bs4 python3-cssselect 176s python3-html5lib python3-scipy python3-matplotlib python3-bottleneck 176s python3-numexpr python3-odf python3-openpyxl python3-tables r-cran-plotly 176s python3-sqlalchemy-ext python3-pyinotify q2cli q2templates q2-cutadapt 176s q2-types q2-metadata q2-demux q2-quality-filter q2-feature-classifier 176s q2-feature-table 176s The following NEW packages will be installed: 176s autopkgtest-satdep fonts-glyphicons-halflings javascript-common libblas3 176s libgfortran5 libjs-bootstrap libjs-jquery libjs-popper.js liblapack3 176s libnorm1t64 libpgm-5.3-0t64 libsodium23 libxslt1.1 libzmq5 176s node-fortawesome-fontawesome-free python3-appdirs python3-bcrypt 176s python3-bibtexparser python3-click python3-colorama python3-dateutil 176s python3-decorator python3-dill python3-filelock python3-flask 176s python3-flask-sqlalchemy python3-flufl.lock python3-globus-sdk 176s python3-greenlet python3-iniconfig python3-itsdangerous python3-lxml 176s python3-nacl python3-networkx python3-numpy python3-packaging python3-pandas 176s python3-pandas-lib python3-paramiko python3-parsl python3-pluggy 176s python3-psutil python3-public python3-py python3-pytest python3-setproctitle 176s python3-sqlalchemy python3-tblib python3-tomlkit python3-typeguard 176s python3-tz python3-tzlocal python3-werkzeug python3-zmq qiime 176s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 176s Need to get 33.3 MB/33.3 MB of archives. 176s After this operation, 180 MB of additional disk space will be used. 176s Get:1 /tmp/autopkgtest.SKamNg/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [728 B] 176s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 176s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf javascript-common all 11+nmu1 [5936 B] 176s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 176s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 177s Get:6 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 177s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 177s Get:8 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 177s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 177s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf libnorm1t64 armhf 1.5.9+dfsg-3.1build1 [206 kB] 177s Get:11 http://ftpmaster.internal/ubuntu oracular/universe armhf libpgm-5.3-0t64 armhf 5.3.128~dfsg-2.1build1 [171 kB] 177s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf libsodium23 armhf 1.0.18-1build3 [139 kB] 177s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libxslt1.1 armhf 1.1.39-0exp1build1 [150 kB] 177s Get:14 http://ftpmaster.internal/ubuntu oracular/universe armhf libzmq5 armhf 4.3.5-1build2 [262 kB] 177s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1573 kB] 177s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf python3-appdirs all 1.4.4-4 [10.9 kB] 177s Get:17 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.5 kB] 177s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf python3-colorama all 0.4.6-4 [32.1 kB] 177s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf python3-click all 8.1.7-1 [79.1 kB] 177s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf python3-dateutil all 2.9.0-2 [80.3 kB] 177s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 177s Get:22 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-dill all 0.3.8-1 [83.0 kB] 177s Get:23 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-filelock all 3.14.0-1 [11.2 kB] 177s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf python3-itsdangerous all 2.1.2-4 [14.6 kB] 177s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf python3-werkzeug all 3.0.3-1 [170 kB] 177s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf python3-flask all 3.0.3-1ubuntu1 [83.2 kB] 177s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf python3-greenlet armhf 3.0.3-0ubuntu5 [153 kB] 177s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf python3-sqlalchemy all 1.4.50+ds1-1build1 [1020 kB] 177s Get:29 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-flask-sqlalchemy all 3.0.3-1 [30.9 kB] 177s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf python3-psutil armhf 5.9.8-2build2 [194 kB] 177s Get:31 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-public all 4.1.0-1 [7052 B] 177s Get:32 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-flufl.lock all 5.0.1-5 [12.7 kB] 177s Get:33 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-globus-sdk all 3.41.0-1 [225 kB] 177s Get:34 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 177s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf python3-lxml armhf 5.2.1-1 [1200 kB] 177s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf python3-nacl armhf 1.5.0-4build1 [54.1 kB] 177s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 177s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 177s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf python3-packaging all 24.0-1 [41.1 kB] 177s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf python3-tz all 2024.1-2 [31.4 kB] 177s Get:41 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pandas-lib armhf 2.1.4+dfsg-8 [4461 kB] 177s Get:42 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pandas all 2.1.4+dfsg-8 [3042 kB] 178s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf python3-bcrypt armhf 3.2.2-1build1 [28.2 kB] 178s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf python3-paramiko all 3.4.0-1ubuntu1 [145 kB] 178s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf python3-setproctitle armhf 1.3.3-1build2 [18.2 kB] 178s Get:46 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-tblib all 3.0.0-4 [12.7 kB] 178s Get:47 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-typeguard all 4.1.5-1 [32.7 kB] 178s Get:48 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-py all 1.11.0-2 [72.7 kB] 178s Get:49 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-zmq armhf 24.0.1-5build1 [275 kB] 178s Get:50 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-parsl all 2024.05.27+ds-1 [274 kB] 178s Get:51 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 178s Get:52 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf python3-pytest all 8.2.2-1ubuntu1 [250 kB] 178s Get:53 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-tomlkit all 0.12.5-1 [37.7 kB] 178s Get:54 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-tzlocal all 5.2-1.1 [20.5 kB] 178s Get:55 http://ftpmaster.internal/ubuntu oracular/universe armhf qiime all 2024.2.0-1ubuntu1 [311 kB] 178s Fetched 33.3 MB in 2s (19.0 MB/s) 178s Selecting previously unselected package fonts-glyphicons-halflings. 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58338 files and directories currently installed.) 178s Preparing to unpack .../00-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 178s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 178s Selecting previously unselected package javascript-common. 178s Preparing to unpack .../01-javascript-common_11+nmu1_all.deb ... 178s Unpacking javascript-common (11+nmu1) ... 178s Selecting previously unselected package libblas3:armhf. 178s Preparing to unpack .../02-libblas3_3.12.0-3build1_armhf.deb ... 178s Unpacking libblas3:armhf (3.12.0-3build1) ... 178s Selecting previously unselected package libgfortran5:armhf. 178s Preparing to unpack .../03-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 178s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 178s Selecting previously unselected package libjs-bootstrap. 178s Preparing to unpack .../04-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 178s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 178s Selecting previously unselected package libjs-jquery. 178s Preparing to unpack .../05-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 178s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 178s Selecting previously unselected package libjs-popper.js. 178s Preparing to unpack .../06-libjs-popper.js_1.16.1+ds-6_all.deb ... 178s Unpacking libjs-popper.js (1.16.1+ds-6) ... 178s Selecting previously unselected package liblapack3:armhf. 178s Preparing to unpack .../07-liblapack3_3.12.0-3build1_armhf.deb ... 178s Unpacking liblapack3:armhf (3.12.0-3build1) ... 179s Selecting previously unselected package libnorm1t64:armhf. 179s Preparing to unpack .../08-libnorm1t64_1.5.9+dfsg-3.1build1_armhf.deb ... 179s Unpacking libnorm1t64:armhf (1.5.9+dfsg-3.1build1) ... 179s Selecting previously unselected package libpgm-5.3-0t64:armhf. 179s Preparing to unpack .../09-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_armhf.deb ... 179s Unpacking libpgm-5.3-0t64:armhf (5.3.128~dfsg-2.1build1) ... 179s Selecting previously unselected package libsodium23:armhf. 179s Preparing to unpack .../10-libsodium23_1.0.18-1build3_armhf.deb ... 179s Unpacking libsodium23:armhf (1.0.18-1build3) ... 179s Selecting previously unselected package libxslt1.1:armhf. 179s Preparing to unpack .../11-libxslt1.1_1.1.39-0exp1build1_armhf.deb ... 179s Unpacking libxslt1.1:armhf (1.1.39-0exp1build1) ... 179s Selecting previously unselected package libzmq5:armhf. 179s Preparing to unpack .../12-libzmq5_4.3.5-1build2_armhf.deb ... 179s Unpacking libzmq5:armhf (4.3.5-1build2) ... 179s Selecting previously unselected package node-fortawesome-fontawesome-free. 179s Preparing to unpack .../13-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... 179s Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 179s Selecting previously unselected package python3-appdirs. 179s Preparing to unpack .../14-python3-appdirs_1.4.4-4_all.deb ... 179s Unpacking python3-appdirs (1.4.4-4) ... 179s Selecting previously unselected package python3-bibtexparser. 179s Preparing to unpack .../15-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 179s Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 179s Selecting previously unselected package python3-colorama. 179s Preparing to unpack .../16-python3-colorama_0.4.6-4_all.deb ... 179s Unpacking python3-colorama (0.4.6-4) ... 179s Selecting previously unselected package python3-click. 179s Preparing to unpack .../17-python3-click_8.1.7-1_all.deb ... 179s Unpacking python3-click (8.1.7-1) ... 179s Selecting previously unselected package python3-dateutil. 179s Preparing to unpack .../18-python3-dateutil_2.9.0-2_all.deb ... 179s Unpacking python3-dateutil (2.9.0-2) ... 179s Selecting previously unselected package python3-decorator. 179s Preparing to unpack .../19-python3-decorator_5.1.1-5_all.deb ... 179s Unpacking python3-decorator (5.1.1-5) ... 179s Selecting previously unselected package python3-dill. 179s Preparing to unpack .../20-python3-dill_0.3.8-1_all.deb ... 179s Unpacking python3-dill (0.3.8-1) ... 179s Selecting previously unselected package python3-filelock. 179s Preparing to unpack .../21-python3-filelock_3.14.0-1_all.deb ... 179s Unpacking python3-filelock (3.14.0-1) ... 179s Selecting previously unselected package python3-itsdangerous. 179s Preparing to unpack .../22-python3-itsdangerous_2.1.2-4_all.deb ... 179s Unpacking python3-itsdangerous (2.1.2-4) ... 179s Selecting previously unselected package python3-werkzeug. 179s Preparing to unpack .../23-python3-werkzeug_3.0.3-1_all.deb ... 179s Unpacking python3-werkzeug (3.0.3-1) ... 179s Selecting previously unselected package python3-flask. 179s Preparing to unpack .../24-python3-flask_3.0.3-1ubuntu1_all.deb ... 179s Unpacking python3-flask (3.0.3-1ubuntu1) ... 179s Selecting previously unselected package python3-greenlet. 179s Preparing to unpack .../25-python3-greenlet_3.0.3-0ubuntu5_armhf.deb ... 179s Unpacking python3-greenlet (3.0.3-0ubuntu5) ... 179s Selecting previously unselected package python3-sqlalchemy. 179s Preparing to unpack .../26-python3-sqlalchemy_1.4.50+ds1-1build1_all.deb ... 179s Unpacking python3-sqlalchemy (1.4.50+ds1-1build1) ... 180s Selecting previously unselected package python3-flask-sqlalchemy. 180s Preparing to unpack .../27-python3-flask-sqlalchemy_3.0.3-1_all.deb ... 180s Unpacking python3-flask-sqlalchemy (3.0.3-1) ... 180s Selecting previously unselected package python3-psutil. 180s Preparing to unpack .../28-python3-psutil_5.9.8-2build2_armhf.deb ... 180s Unpacking python3-psutil (5.9.8-2build2) ... 180s Selecting previously unselected package python3-public. 180s Preparing to unpack .../29-python3-public_4.1.0-1_all.deb ... 180s Unpacking python3-public (4.1.0-1) ... 180s Selecting previously unselected package python3-flufl.lock. 180s Preparing to unpack .../30-python3-flufl.lock_5.0.1-5_all.deb ... 180s Unpacking python3-flufl.lock (5.0.1-5) ... 180s Selecting previously unselected package python3-globus-sdk. 180s Preparing to unpack .../31-python3-globus-sdk_3.41.0-1_all.deb ... 180s Unpacking python3-globus-sdk (3.41.0-1) ... 180s Selecting previously unselected package python3-iniconfig. 180s Preparing to unpack .../32-python3-iniconfig_1.1.1-2_all.deb ... 180s Unpacking python3-iniconfig (1.1.1-2) ... 180s Selecting previously unselected package python3-lxml:armhf. 180s Preparing to unpack .../33-python3-lxml_5.2.1-1_armhf.deb ... 180s Unpacking python3-lxml:armhf (5.2.1-1) ... 180s Selecting previously unselected package python3-nacl. 180s Preparing to unpack .../34-python3-nacl_1.5.0-4build1_armhf.deb ... 180s Unpacking python3-nacl (1.5.0-4build1) ... 180s Selecting previously unselected package python3-networkx. 180s Preparing to unpack .../35-python3-networkx_3.2.1-4ubuntu1_all.deb ... 180s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 181s Selecting previously unselected package python3-numpy. 181s Preparing to unpack .../36-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 181s Unpacking python3-numpy (1:1.26.4+ds-10) ... 181s Selecting previously unselected package python3-packaging. 181s Preparing to unpack .../37-python3-packaging_24.0-1_all.deb ... 181s Unpacking python3-packaging (24.0-1) ... 181s Selecting previously unselected package python3-tz. 181s Preparing to unpack .../38-python3-tz_2024.1-2_all.deb ... 181s Unpacking python3-tz (2024.1-2) ... 181s Selecting previously unselected package python3-pandas-lib:armhf. 181s Preparing to unpack .../39-python3-pandas-lib_2.1.4+dfsg-8_armhf.deb ... 181s Unpacking python3-pandas-lib:armhf (2.1.4+dfsg-8) ... 181s Selecting previously unselected package python3-pandas. 181s Preparing to unpack .../40-python3-pandas_2.1.4+dfsg-8_all.deb ... 181s Unpacking python3-pandas (2.1.4+dfsg-8) ... 181s Selecting previously unselected package python3-bcrypt. 181s Preparing to unpack .../41-python3-bcrypt_3.2.2-1build1_armhf.deb ... 181s Unpacking python3-bcrypt (3.2.2-1build1) ... 181s Selecting previously unselected package python3-paramiko. 182s Preparing to unpack .../42-python3-paramiko_3.4.0-1ubuntu1_all.deb ... 182s Unpacking python3-paramiko (3.4.0-1ubuntu1) ... 182s Selecting previously unselected package python3-setproctitle:armhf. 182s Preparing to unpack .../43-python3-setproctitle_1.3.3-1build2_armhf.deb ... 182s Unpacking python3-setproctitle:armhf (1.3.3-1build2) ... 182s Selecting previously unselected package python3-tblib. 182s Preparing to unpack .../44-python3-tblib_3.0.0-4_all.deb ... 182s Unpacking python3-tblib (3.0.0-4) ... 182s Selecting previously unselected package python3-typeguard. 182s Preparing to unpack .../45-python3-typeguard_4.1.5-1_all.deb ... 182s Unpacking python3-typeguard (4.1.5-1) ... 182s Selecting previously unselected package python3-py. 182s Preparing to unpack .../46-python3-py_1.11.0-2_all.deb ... 182s Unpacking python3-py (1.11.0-2) ... 182s Selecting previously unselected package python3-zmq. 182s Preparing to unpack .../47-python3-zmq_24.0.1-5build1_armhf.deb ... 182s Unpacking python3-zmq (24.0.1-5build1) ... 182s Selecting previously unselected package python3-parsl. 182s Preparing to unpack .../48-python3-parsl_2024.05.27+ds-1_all.deb ... 182s Unpacking python3-parsl (2024.05.27+ds-1) ... 182s Selecting previously unselected package python3-pluggy. 182s Preparing to unpack .../49-python3-pluggy_1.5.0-1_all.deb ... 182s Unpacking python3-pluggy (1.5.0-1) ... 182s Selecting previously unselected package python3-pytest. 182s Preparing to unpack .../50-python3-pytest_8.2.2-1ubuntu1_all.deb ... 182s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 182s Selecting previously unselected package python3-tomlkit. 182s Preparing to unpack .../51-python3-tomlkit_0.12.5-1_all.deb ... 182s Unpacking python3-tomlkit (0.12.5-1) ... 182s Selecting previously unselected package python3-tzlocal. 182s Preparing to unpack .../52-python3-tzlocal_5.2-1.1_all.deb ... 182s Unpacking python3-tzlocal (5.2-1.1) ... 182s Selecting previously unselected package qiime. 182s Preparing to unpack .../53-qiime_2024.2.0-1ubuntu1_all.deb ... 182s Unpacking qiime (2024.2.0-1ubuntu1) ... 182s Selecting previously unselected package autopkgtest-satdep. 182s Preparing to unpack .../54-1-autopkgtest-satdep.deb ... 182s Unpacking autopkgtest-satdep (0) ... 182s Setting up javascript-common (11+nmu1) ... 182s Setting up python3-iniconfig (1.1.1-2) ... 182s Setting up libnorm1t64:armhf (1.5.9+dfsg-3.1build1) ... 182s Setting up python3-filelock (3.14.0-1) ... 182s Setting up libsodium23:armhf (1.0.18-1build3) ... 182s Setting up python3-tblib (3.0.0-4) ... 183s Setting up python3-py (1.11.0-2) ... 183s Setting up libjs-popper.js (1.16.1+ds-6) ... 183s Setting up python3-colorama (0.4.6-4) ... 183s Setting up python3-public (4.1.0-1) ... 183s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 183s Setting up python3-bcrypt (3.2.2-1build1) ... 183s Setting up python3-typeguard (4.1.5-1) ... 183s Setting up python3-itsdangerous (2.1.2-4) ... 184s Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... 184s Setting up python3-click (8.1.7-1) ... 184s Setting up python3-networkx (3.2.1-4ubuntu1) ... 185s Setting up python3-psutil (5.9.8-2build2) ... 185s Setting up python3-tz (2024.1-2) ... 186s Setting up python3-flufl.lock (5.0.1-5) ... 186s Setting up libpgm-5.3-0t64:armhf (5.3.128~dfsg-2.1build1) ... 186s Setting up python3-decorator (5.1.1-5) ... 186s Setting up libblas3:armhf (3.12.0-3build1) ... 186s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 186s Setting up python3-packaging (24.0-1) ... 186s Setting up python3-dill (0.3.8-1) ... 186s Setting up python3-greenlet (3.0.3-0ubuntu5) ... 186s Setting up python3-setproctitle:armhf (1.3.3-1build2) ... 186s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ... 186s Setting up python3-pluggy (1.5.0-1) ... 187s Setting up libxslt1.1:armhf (1.1.39-0exp1build1) ... 187s Setting up python3-dateutil (2.9.0-2) ... 187s Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... 187s /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' 187s string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) 187s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 187s Setting up python3-tzlocal (5.2-1.1) ... 187s Setting up python3-tomlkit (0.12.5-1) ... 187s Setting up python3-appdirs (1.4.4-4) ... 187s Setting up python3-nacl (1.5.0-4build1) ... 188s Setting up python3-globus-sdk (3.41.0-1) ... 188s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 188s Setting up liblapack3:armhf (3.12.0-3build1) ... 188s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 188s Setting up libzmq5:armhf (4.3.5-1build2) ... 188s Setting up python3-pytest (8.2.2-1ubuntu1) ... 188s Setting up python3-sqlalchemy (1.4.50+ds1-1build1) ... 189s Setting up python3-werkzeug (3.0.3-1) ... 190s Setting up python3-zmq (24.0.1-5build1) ... 190s Setting up python3-numpy (1:1.26.4+ds-10) ... 192s Setting up python3-lxml:armhf (5.2.1-1) ... 192s Setting up python3-paramiko (3.4.0-1ubuntu1) ... 192s Setting up python3-flask (3.0.3-1ubuntu1) ... 193s Setting up python3-pandas-lib:armhf (2.1.4+dfsg-8) ... 193s Setting up python3-pandas (2.1.4+dfsg-8) ... 198s Setting up python3-flask-sqlalchemy (3.0.3-1) ... 198s Setting up python3-parsl (2024.05.27+ds-1) ... 198s Setting up qiime (2024.2.0-1ubuntu1) ... 199s Setting up autopkgtest-satdep (0) ... 199s Processing triggers for man-db (2.12.1-1) ... 199s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 214s (Reading database ... 69429 files and directories currently installed.) 214s Removing autopkgtest-satdep (0) ... 220s autopkgtest [05:23:38]: test run-unit-test: [----------------------- 222s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 222s autopkgtest [05:23:40]: test run-unit-test: -----------------------] 228s run-unit-test SKIP exit status 77 and marked as skippable 228s autopkgtest [05:23:46]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 232s autopkgtest [05:23:50]: @@@@@@@@@@@@@@@@@@@@ summary 232s run-unit-test SKIP exit status 77 and marked as skippable