0s autopkgtest [15:36:11]: starting date and time: 2024-06-30 15:36:11+0000 0s autopkgtest [15:36:11]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount 0s autopkgtest [15:36:11]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7qz6jt64/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:qiime --apt-upgrade q2-taxa --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=qiime/2024.5.0-1 -- lxd -r lxd-armhf-10.145.243.222 lxd-armhf-10.145.243.222:autopkgtest/ubuntu/oracular/armhf 25s autopkgtest [15:36:36]: testbed dpkg architecture: armhf 27s autopkgtest [15:36:38]: testbed apt version: 2.9.5 27s autopkgtest [15:36:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 36s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [378 kB] 36s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [43.8 kB] 36s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 36s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B] 36s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [56.3 kB] 36s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 36s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [283 kB] 36s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1768 B] 36s Fetched 885 kB in 1s (1151 kB/s) 36s Reading package lists... 55s tee: /proc/self/fd/2: Permission denied 76s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 76s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 76s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 76s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 78s Reading package lists... 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 79s Calculating upgrade... 79s The following packages will be upgraded: 79s lto-disabled-list 79s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Need to get 12.3 kB of archives. 79s After this operation, 0 B of additional disk space will be used. 79s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf lto-disabled-list all 50 [12.3 kB] 80s Fetched 12.3 kB in 0s (82.8 kB/s) 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58374 files and directories currently installed.) 80s Preparing to unpack .../lto-disabled-list_50_all.deb ... 80s Unpacking lto-disabled-list (50) over (49) ... 80s Setting up lto-disabled-list (50) ... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 83s autopkgtest [15:37:34]: rebooting testbed after setup commands that affected boot 127s autopkgtest [15:38:18]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 155s autopkgtest [15:38:46]: @@@@@@@@@@@@@@@@@@@@ apt-source q2-taxa 164s Get:1 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (dsc) [2504 B] 164s Get:2 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (tar) [234 kB] 164s Get:3 http://ftpmaster.internal/ubuntu oracular/universe q2-taxa 2024.2.0+dfsg-1ubuntu1 (diff) [7856 B] 165s gpgv: Signature made Mon Jun 3 18:53:13 2024 UTC 165s gpgv: using RSA key 439884E6862A429C290DF63B033C4CA276024834 165s gpgv: issuer "athos.ribeiro@canonical.com" 165s gpgv: Can't check signature: No public key 165s dpkg-source: warning: cannot verify inline signature for ./q2-taxa_2024.2.0+dfsg-1ubuntu1.dsc: no acceptable signature found 165s autopkgtest [15:38:56]: testing package q2-taxa version 2024.2.0+dfsg-1ubuntu1 167s autopkgtest [15:38:58]: build not needed 169s autopkgtest [15:39:00]: test run-unit-test: preparing testbed 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 1 180s Starting 2 pkgProblemResolver with broken count: 1 180s Investigating (0) q2-types:armhf < none -> 2024.2.0-1ubuntu1 @un puN Ib > 180s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 180s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 180s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 180s Re-Instated libaec0:armhf 180s Re-Instated libsz2:armhf 180s Re-Instated libhdf5-103-1t64:armhf 180s Re-Instated libhdf5-hl-100t64:armhf 180s Re-Instated liblzf1:armhf 180s Re-Instated python3-h5py-serial:armhf 180s Re-Instated python3-h5py:armhf 180s Re-Instated liblbfgsb0:armhf 180s Re-Instated python3-scipy:armhf 180s Re-Instated python3-biom-format:armhf 180s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 180s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 180s Re-Instated libyajl2:armhf 180s Re-Instated python3-ijson:armhf 180s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.27+ds-2 @un uH > 180s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 180s Re-Instated libopenblas0-pthread:armhf 180s Re-Instated libopenblas0:armhf 180s Done 180s Some packages could not be installed. This may mean that you have 180s requested an impossible situation or if you are using the unstable 180s distribution that some required packages have not yet been created 180s or been moved out of Incoming. 180s The following information may help to resolve the situation: 180s 180s The following packages have unmet dependencies: 181s q2-types : Depends: python3-skbio but it is not installable 181s E: Unable to correct problems, you have held broken packages. 181s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s Starting pkgProblemResolver with broken count: 1 187s Starting 2 pkgProblemResolver with broken count: 1 187s Investigating (0) q2-types:armhf < none -> 2024.2.0-1ubuntu1 @un puN Ib > 187s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 187s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 187s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 187s Re-Instated libaec0:armhf 187s Re-Instated libsz2:armhf 187s Re-Instated libhdf5-103-1t64:armhf 187s Re-Instated libhdf5-hl-100t64:armhf 187s Re-Instated liblzf1:armhf 187s Re-Instated python3-h5py-serial:armhf 187s Re-Instated python3-h5py:armhf 187s Re-Instated liblbfgsb0:armhf 187s Re-Instated python3-scipy:armhf 187s Re-Instated python3-biom-format:armhf 187s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 187s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 187s Re-Instated libyajl2:armhf 187s Re-Instated python3-ijson:armhf 187s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.27+ds-2 @un uH > 187s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 187s Re-Instated libopenblas0-pthread:armhf 187s Re-Instated libopenblas0:armhf 187s Done 187s Some packages could not be installed. This may mean that you have 187s requested an impossible situation or if you are using the unstable 187s distribution that some required packages have not yet been created 187s or been moved out of Incoming. 187s The following information may help to resolve the situation: 187s 187s The following packages have unmet dependencies: 187s q2-types : Depends: python3-skbio but it is not installable 187s E: Unable to correct problems, you have held broken packages. 187s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 189s Reading package lists... 189s Building dependency tree... 189s Reading state information... 190s Starting pkgProblemResolver with broken count: 1 190s Starting 2 pkgProblemResolver with broken count: 1 190s Investigating (0) q2-types:armhf < none -> 2024.2.0-1ubuntu1 @un puN Ib > 190s Broken q2-types:armhf Depends on python3-skbio:armhf < none @un H > 190s Broken q2-types:armhf Depends on python3-biom-format:armhf < none | 2.1.16-1 @un uH > 190s Considering python3-biom-format:armhf 1 as a solution to q2-types:armhf 2 190s Re-Instated libaec0:armhf 190s Re-Instated libsz2:armhf 190s Re-Instated libhdf5-103-1t64:armhf 190s Re-Instated libhdf5-hl-100t64:armhf 190s Re-Instated liblzf1:armhf 190s Re-Instated python3-h5py-serial:armhf 190s Re-Instated python3-h5py:armhf 190s Re-Instated liblbfgsb0:armhf 190s Re-Instated python3-scipy:armhf 190s Re-Instated python3-biom-format:armhf 190s Broken q2-types:armhf Depends on python3-ijson:armhf < none | 3.3.0-1 @un uH > 190s Considering python3-ijson:armhf 1 as a solution to q2-types:armhf 2 190s Re-Instated libyajl2:armhf 190s Re-Instated python3-ijson:armhf 190s Broken q2-types:armhf Depends on libopenblas0:armhf < none | 0.3.27+ds-2 @un uH > 190s Considering libopenblas0:armhf 1 as a solution to q2-types:armhf 2 190s Re-Instated libopenblas0-pthread:armhf 190s Re-Instated libopenblas0:armhf 190s Done 190s Some packages could not be installed. This may mean that you have 190s requested an impossible situation or if you are using the unstable 190s distribution that some required packages have not yet been created 190s or been moved out of Incoming. 190s The following information may help to resolve the situation: 190s 190s The following packages have unmet dependencies: 190s q2-types : Depends: python3-skbio but it is not installable 190s E: Unable to correct problems, you have held broken packages. 190s run-unit-test SKIP installation fails and skip-not-installable set 190s autopkgtest [15:39:21]: @@@@@@@@@@@@@@@@@@@@ summary 190s run-unit-test SKIP installation fails and skip-not-installable set