0s autopkgtest [05:02:08]: starting date and time: 2024-06-08 05:02:08+0000 0s autopkgtest [05:02:08]: git checkout: 433ed4c Merge branch 'skia/nova_flock' into 'ubuntu/5.34+prod' 0s autopkgtest [05:02:08]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.popme1fa/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:pytest,src:astropy --apt-upgrade python-pymbar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=pytest/8.2.2-1ubuntu1 astropy/6.0.1-4' -- lxd -r lxd-armhf-10.145.243.141 lxd-armhf-10.145.243.141:autopkgtest/ubuntu/oracular/armhf 26s autopkgtest [05:02:34]: testbed dpkg architecture: armhf 28s autopkgtest [05:02:36]: testbed apt version: 2.9.3 28s autopkgtest [05:02:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 36s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 36s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [327 kB] 36s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 36s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 36s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 36s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [35.4 kB] 36s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1860 B] 36s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [238 kB] 36s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1768 B] 37s Fetched 768 kB in 1s (944 kB/s) 37s Reading package lists... 53s tee: /proc/self/fd/2: Permission denied 75s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 76s Reading package lists... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s Calculating upgrade... 79s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 82s autopkgtest [05:03:30]: rebooting testbed after setup commands that affected boot 122s autopkgtest [05:04:10]: testbed running kernel: Linux 6.5.0-35-generic #35~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue May 7 11:19:33 UTC 2 149s autopkgtest [05:04:37]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pymbar 159s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pymbar 3.1.0-4 (dsc) [2363 B] 159s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pymbar 3.1.0-4 (tar) [17.1 MB] 159s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pymbar 3.1.0-4 (diff) [3916 B] 160s gpgv: Signature made Wed Feb 1 21:01:41 2023 UTC 160s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 160s gpgv: issuer "emollier@debian.org" 160s gpgv: Can't check signature: No public key 160s dpkg-source: warning: cannot verify inline signature for ./python-pymbar_3.1.0-4.dsc: no acceptable signature found 160s autopkgtest [05:04:48]: testing package python-pymbar version 3.1.0-4 162s autopkgtest [05:04:50]: build not needed 165s autopkgtest [05:04:53]: test command1: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s The following additional packages will be installed: 180s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator 180s python3-iniconfig python3-numpy python3-packaging python3-pluggy 180s python3-pymbar python3-pytest python3-scipy 180s Suggested packages: 180s gcc gfortran python-numpy-doc python3-dev python-scipy-doc 180s Recommended packages: 180s g++ | c++-compiler python3-pil 181s The following NEW packages will be installed: 181s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 181s python3-decorator python3-iniconfig python3-numpy python3-packaging 181s python3-pluggy python3-pymbar python3-pytest python3-scipy 181s 0 upgraded, 13 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 21.5 MB/21.5 MB of archives. 181s After this operation, 75.4 MB of additional disk space will be used. 181s Get:1 /tmp/autopkgtest.dr268L/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [720 B] 181s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 181s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 181s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 182s Get:5 http://ftpmaster.internal/ubuntu oracular/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 182s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 182s Get:7 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 182s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 182s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf python3-packaging all 24.0-1 [41.1 kB] 182s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 182s Get:11 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-scipy armhf 1.11.4-10 [15.1 MB] 182s Get:12 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pymbar all 3.1.0-4 [67.8 kB] 182s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf python3-pytest all 8.2.2-1ubuntu1 [250 kB] 183s Fetched 21.5 MB in 1s (16.5 MB/s) 183s Selecting previously unselected package libblas3:armhf. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58338 files and directories currently installed.) 183s Preparing to unpack .../00-libblas3_3.12.0-3build1_armhf.deb ... 183s Unpacking libblas3:armhf (3.12.0-3build1) ... 183s Selecting previously unselected package libgfortran5:armhf. 183s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 183s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 183s Selecting previously unselected package liblapack3:armhf. 183s Preparing to unpack .../02-liblapack3_3.12.0-3build1_armhf.deb ... 183s Unpacking liblapack3:armhf (3.12.0-3build1) ... 183s Selecting previously unselected package liblbfgsb0:armhf. 183s Preparing to unpack .../03-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 183s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 183s Selecting previously unselected package python3-decorator. 183s Preparing to unpack .../04-python3-decorator_5.1.1-5_all.deb ... 183s Unpacking python3-decorator (5.1.1-5) ... 183s Selecting previously unselected package python3-iniconfig. 183s Preparing to unpack .../05-python3-iniconfig_1.1.1-2_all.deb ... 183s Unpacking python3-iniconfig (1.1.1-2) ... 183s Selecting previously unselected package python3-numpy. 183s Preparing to unpack .../06-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 183s Unpacking python3-numpy (1:1.26.4+ds-10) ... 184s Selecting previously unselected package python3-packaging. 184s Preparing to unpack .../07-python3-packaging_24.0-1_all.deb ... 184s Unpacking python3-packaging (24.0-1) ... 184s Selecting previously unselected package python3-pluggy. 184s Preparing to unpack .../08-python3-pluggy_1.5.0-1_all.deb ... 184s Unpacking python3-pluggy (1.5.0-1) ... 184s Selecting previously unselected package python3-scipy. 184s Preparing to unpack .../09-python3-scipy_1.11.4-10_armhf.deb ... 184s Unpacking python3-scipy (1.11.4-10) ... 184s Selecting previously unselected package python3-pymbar. 184s Preparing to unpack .../10-python3-pymbar_3.1.0-4_all.deb ... 184s Unpacking python3-pymbar (3.1.0-4) ... 184s Selecting previously unselected package python3-pytest. 184s Preparing to unpack .../11-python3-pytest_8.2.2-1ubuntu1_all.deb ... 184s Unpacking python3-pytest (8.2.2-1ubuntu1) ... 184s Selecting previously unselected package autopkgtest-satdep. 184s Preparing to unpack .../12-1-autopkgtest-satdep.deb ... 184s Unpacking autopkgtest-satdep (0) ... 184s Setting up python3-iniconfig (1.1.1-2) ... 184s Setting up python3-decorator (5.1.1-5) ... 185s Setting up libblas3:armhf (3.12.0-3build1) ... 185s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 185s Setting up python3-packaging (24.0-1) ... 185s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ... 185s Setting up python3-pluggy (1.5.0-1) ... 185s Setting up liblapack3:armhf (3.12.0-3build1) ... 185s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 185s Setting up python3-pytest (8.2.2-1ubuntu1) ... 185s Setting up python3-numpy (1:1.26.4+ds-10) ... 188s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 188s Setting up python3-scipy (1.11.4-10) ... 193s Setting up python3-pymbar (3.1.0-4) ... 193s /usr/lib/python3/dist-packages/pymbar/bar.py:56: SyntaxWarning: invalid escape sequence '\s' 193s """A function that when zeroed is equivalent to the solution of 193s /usr/lib/python3/dist-packages/pymbar/mbar.py:381: SyntaxWarning: invalid escape sequence '\s' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/mbar.py:442: SyntaxWarning: invalid escape sequence '\i' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/mbar.py:865: SyntaxWarning: invalid escape sequence '\s' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/mbar.py:1436: SyntaxWarning: invalid escape sequence '\s' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/mbar.py:1866: SyntaxWarning: invalid escape sequence '\l' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:957: SyntaxWarning: invalid escape sequence '\i' 193s """Compute estimate of overlap matrix between the states. 193s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1376: SyntaxWarning: invalid escape sequence '\s' 193s """Compute the free energy of occupying a number of bins. 193s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1864: SyntaxWarning: invalid escape sequence '\s' 193s 'Warning: Should have \sum_n W_nk = 1. Actual column sum for state %d was %f. %d other columns have similar problems' % 193s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1873: SyntaxWarning: invalid escape sequence '\s' 193s 'Warning: Should have \sum_k N_k W_nk = 1. Actual row sum for sample %d was %f. %d other rows have similar problems' % 193s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:2078: SyntaxWarning: invalid escape sequence '\l' 193s """ 193s /usr/lib/python3/dist-packages/pymbar/testsystems/gaussian_work.py:5: SyntaxWarning: invalid escape sequence '\e' 193s """Generate samples from forward and reverse Gaussian work distributions. 193s /usr/lib/python3/dist-packages/pymbar/utils.py:230: SyntaxWarning: invalid escape sequence '\l' 193s """Compute the log of a sum of exponentiated terms exp(a_n) in a numerically-stable manner. 193s /usr/lib/python3/dist-packages/pymbar/utils.py:359: SyntaxWarning: invalid escape sequence '\s' 193s 'Warning: Should have \sum_n W_nk = 1. Actual column sum for state %d was %f. %d other columns have similar problems' % 193s /usr/lib/python3/dist-packages/pymbar/utils.py:368: SyntaxWarning: invalid escape sequence '\s' 193s 'Warning: Should have \sum_k N_k W_nk = 1. Actual row sum for sample %d was %f. %d other rows have similar problems' % 193s Setting up autopkgtest-satdep (0) ... 193s Processing triggers for man-db (2.12.1-1) ... 193s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 206s (Reading database ... 60813 files and directories currently installed.) 206s Removing autopkgtest-satdep (0) ... 214s autopkgtest [05:05:42]: test command1: rm pymbar/*.py && pytest-3 214s autopkgtest [05:05:42]: test command1: [----------------------- 217s ============================= test session starts ============================== 217s platform linux -- Python 3.12.3, pytest-8.2.2, pluggy-1.5.0 217s rootdir: /tmp/autopkgtest.dr268L/build.fCI/src 217s collected 37 items 217s 217s pymbar/tests/test_bar.py .. [ 5%] 391s pymbar/tests/test_covariance.py ... [ 13%] 475s pymbar/tests/test_mbar.py ................ [ 56%] 572s pymbar/tests/test_mbar_solvers.py .... [ 67%] 576s pymbar/tests/test_timeseries.py ..ss.ss.. [ 91%] 576s pymbar/tests/test_utils.py ... [100%] 576s 576s =============================== warnings summary =============================== 576s ../../../../usr/lib/python3/dist-packages/pymbar/utils_for_testing.py:29 576s /usr/lib/python3/dist-packages/pymbar/utils_for_testing.py:29: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 576s from pkg_resources import resource_filename 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 9 warnings 576s pymbar/tests/test_mbar.py: 8 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:561: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s f_i = np.matrix(self.f_k) 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 3 warnings 576s pymbar/tests/test_mbar.py: 29 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1772: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Ndiag = np.matrix(np.diag(N_k), dtype=np.float64) 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 3 warnings 576s pymbar/tests/test_mbar.py: 29 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1773: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s W = np.matrix(W, dtype=np.float64) 576s 576s pymbar/tests/test_bar.py: 40 warnings 576s pymbar/tests/test_covariance.py: 78 warnings 576s pymbar/tests/test_mbar.py: 287 warnings 576s pymbar/tests/test_mbar_solvers.py: 99 warnings 576s /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:70: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s return matrix(data, dtype=dtype, copy=False) 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 3 warnings 576s pymbar/tests/test_mbar.py: 29 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1783: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Sigma = np.matrix(np.diag(np.sqrt(S2))) 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 3 warnings 576s pymbar/tests/test_mbar.py: 29 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1784: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s V = np.matrix(V) 576s 576s pymbar/tests/test_bar.py: 4 warnings 576s pymbar/tests/test_covariance.py: 9 warnings 576s pymbar/tests/test_mbar.py: 23 warnings 576s pymbar/tests/test_mbar_solvers.py: 11 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1636: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s diag = np.matrix(cov.diagonal()) 576s 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s /usr/lib/python3/dist-packages/pymbar/bar.py:527: FutureWarning: Warning: This API is experimental and subject to change in future releases 576s warnings.warn("Warning: This API is experimental and subject to change in future releases", FutureWarning) 576s 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s pymbar/tests/test_bar.py::test_bar_computeOverlap 576s pymbar/tests/test_mbar.py::test_mbar_computeOverlap 576s pymbar/tests/test_mbar.py::test_mbar_computeOverlap 576s pymbar/tests/test_mbar.py::test_mbar_computeOverlap 576s pymbar/tests/test_mbar.py::test_mbar_computeOverlap 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:485: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s W = np.matrix(self.getWeights(), np.float64) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1753: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Ndiag = np.matrix(np.diag(N_k), dtype=np.float64) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1754: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s W = np.matrix(W, dtype=np.float64) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1759: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Sigma = np.matrix(np.diag(S)) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1760: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s V = np.matrix(Vt).T 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:385: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s f_i = np.matrix(self.f_k) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1925: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Ndiag = np.matrix(np.diag(N_k), dtype=np.float64) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1926: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s W = np.matrix(W, dtype=np.float64) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1931: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Sigma = np.matrix(np.diag(S)) 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1932: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s V = np.matrix(Vt).T 576s 576s pymbar/tests/test_covariance.py::test_100x100_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_oscillators 576s pymbar/tests/test_covariance.py::test_200x50_exponentials 576s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1784: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Ainv = np.matrix(np.zeros([M, M], dtype=np.float64)) 576s 576s pymbar/tests/test_mbar.py: 560 warnings 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:579: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s diffm[:,:,b] = np.matrix(self.f_k_boots[b,:]) - np.matrix(self.f_k_boots[b,:]).transpose() 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeExpectations_position_differences 576s pymbar/tests/test_mbar.py::test_mbar_computeExpectations_position_differences 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1088: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s A_im = np.matrix(inner_results['observables']) 576s 576s pymbar/tests/test_mbar.py: 16 warnings 576s /tmp/autopkgtest.dr268L/build.fCI/src/pymbar/tests/test_mbar.py:23: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s xa_ij = np.array(np.matrix(xa) - np.matrix(xa).transpose()) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1377: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s Adiag = np.matrix(np.zeros([3*K,3*K],dtype=np.float64)) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1382: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s f_k = np.matrix(inner_results['f']) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1389: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s u_k = np.matrix(inner_results['observables']) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /tmp/autopkgtest.dr268L/build.fCI/src/pymbar/tests/test_mbar.py:253: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s fa_ij = np.array(np.matrix(fa) - np.matrix(fa).transpose()) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /tmp/autopkgtest.dr268L/build.fCI/src/pymbar/tests/test_mbar.py:254: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s ua_ij = np.array(np.matrix(ua) - np.matrix(ua).transpose()) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s pymbar/tests/test_mbar.py::test_mbar_computeEntropyAndEnthalpy 576s /tmp/autopkgtest.dr268L/build.fCI/src/pymbar/tests/test_mbar.py:255: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s sa_ij = np.array(np.matrix(sa) - np.matrix(sa).transpose()) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computeOverlap 576s /tmp/autopkgtest.dr268L/build.fCI/src/pymbar/tests/test_mbar.py:301: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s reference_matrix = np.matrix((1.0/d)*np.ones([d,d])) 576s 576s pymbar/tests/test_mbar.py::test_mbar_computePerturbedFreeEnergeies 576s pymbar/tests/test_mbar.py::test_mbar_computePerturbedFreeEnergeies 576s pymbar/tests/test_mbar.py::test_mbar_computePerturbedFreeEnergeies 576s pymbar/tests/test_mbar.py::test_mbar_computePerturbedFreeEnergeies 576s /usr/lib/python3/dist-packages/pymbar/mbar.py:1280: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. 576s f_k = np.matrix(inner_results['f']) 576s 576s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 576s =========== 33 passed, 4 skipped, 1431 warnings in 360.52s (0:06:00) =========== 577s autopkgtest [05:11:45]: test command1: -----------------------] 581s autopkgtest [05:11:49]: test command1: - - - - - - - - - - results - - - - - - - - - - 581s command1 PASS 584s autopkgtest [05:11:52]: test autodep8-python3: preparing testbed 613s autopkgtest [05:12:21]: testbed dpkg architecture: armhf 615s autopkgtest [05:12:23]: testbed apt version: 2.9.3 615s autopkgtest [05:12:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 622s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB] 622s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [1680 B] 623s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [327 kB] 623s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [44.3 kB] 623s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7972 B] 623s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [35.4 kB] 623s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1860 B] 623s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [238 kB] 623s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1768 B] 623s Fetched 768 kB in 1s (951 kB/s) 623s Reading package lists... 637s tee: /proc/self/fd/2: Permission denied 659s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 659s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 659s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 659s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 660s Reading package lists... 660s Reading package lists... 661s Building dependency tree... 661s Reading state information... 662s Calculating upgrade... 662s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 662s Reading package lists... 663s Building dependency tree... 663s Reading state information... 664s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 665s autopkgtest [05:13:13]: rebooting testbed after setup commands that affected boot 738s Reading package lists... 739s Building dependency tree... 739s Reading state information... 739s Starting pkgProblemResolver with broken count: 0 739s Starting 2 pkgProblemResolver with broken count: 0 739s Done 740s The following additional packages will be installed: 740s libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-all python3-decorator 740s python3-numpy python3-pymbar python3-scipy 740s Suggested packages: 740s gcc gfortran python-numpy-doc python3-dev python3-pytest python-scipy-doc 740s Recommended packages: 740s g++ | c++-compiler python3-pil 740s The following NEW packages will be installed: 740s autopkgtest-satdep libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-all 740s python3-decorator python3-numpy python3-pymbar python3-scipy 740s 0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded. 740s Need to get 21.2 MB/21.2 MB of archives. 740s After this operation, 73.8 MB of additional disk space will be used. 740s Get:1 /tmp/autopkgtest.dr268L/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 741s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 741s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 741s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 741s Get:5 http://ftpmaster.internal/ubuntu oracular/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 741s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf python3-all armhf 3.12.3-0ubuntu1 [886 B] 741s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 741s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 741s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-scipy armhf 1.11.4-10 [15.1 MB] 742s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pymbar all 3.1.0-4 [67.8 kB] 743s Fetched 21.2 MB in 1s (17.9 MB/s) 743s Selecting previously unselected package libblas3:armhf. 743s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58338 files and directories currently installed.) 743s Preparing to unpack .../0-libblas3_3.12.0-3build1_armhf.deb ... 743s Unpacking libblas3:armhf (3.12.0-3build1) ... 743s Selecting previously unselected package libgfortran5:armhf. 743s Preparing to unpack .../1-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 743s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 743s Selecting previously unselected package liblapack3:armhf. 743s Preparing to unpack .../2-liblapack3_3.12.0-3build1_armhf.deb ... 743s Unpacking liblapack3:armhf (3.12.0-3build1) ... 743s Selecting previously unselected package liblbfgsb0:armhf. 743s Preparing to unpack .../3-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 743s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 743s Selecting previously unselected package python3-all. 743s Preparing to unpack .../4-python3-all_3.12.3-0ubuntu1_armhf.deb ... 743s Unpacking python3-all (3.12.3-0ubuntu1) ... 743s Selecting previously unselected package python3-decorator. 743s Preparing to unpack .../5-python3-decorator_5.1.1-5_all.deb ... 743s Unpacking python3-decorator (5.1.1-5) ... 743s Selecting previously unselected package python3-numpy. 743s Preparing to unpack .../6-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 743s Unpacking python3-numpy (1:1.26.4+ds-10) ... 744s Selecting previously unselected package python3-scipy. 744s Preparing to unpack .../7-python3-scipy_1.11.4-10_armhf.deb ... 744s Unpacking python3-scipy (1.11.4-10) ... 744s Selecting previously unselected package python3-pymbar. 744s Preparing to unpack .../8-python3-pymbar_3.1.0-4_all.deb ... 744s Unpacking python3-pymbar (3.1.0-4) ... 744s Selecting previously unselected package autopkgtest-satdep. 744s Preparing to unpack .../9-2-autopkgtest-satdep.deb ... 744s Unpacking autopkgtest-satdep (0) ... 744s Setting up python3-all (3.12.3-0ubuntu1) ... 744s Setting up python3-decorator (5.1.1-5) ... 744s Setting up libblas3:armhf (3.12.0-3build1) ... 745s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 745s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ... 745s Setting up liblapack3:armhf (3.12.0-3build1) ... 745s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 745s Setting up python3-numpy (1:1.26.4+ds-10) ... 747s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 747s Setting up python3-scipy (1.11.4-10) ... 751s Setting up python3-pymbar (3.1.0-4) ... 751s /usr/lib/python3/dist-packages/pymbar/bar.py:56: SyntaxWarning: invalid escape sequence '\s' 751s """A function that when zeroed is equivalent to the solution of 751s /usr/lib/python3/dist-packages/pymbar/mbar.py:381: SyntaxWarning: invalid escape sequence '\s' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/mbar.py:442: SyntaxWarning: invalid escape sequence '\i' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/mbar.py:865: SyntaxWarning: invalid escape sequence '\s' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/mbar.py:1436: SyntaxWarning: invalid escape sequence '\s' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/mbar.py:1866: SyntaxWarning: invalid escape sequence '\l' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:957: SyntaxWarning: invalid escape sequence '\i' 751s """Compute estimate of overlap matrix between the states. 751s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1376: SyntaxWarning: invalid escape sequence '\s' 751s """Compute the free energy of occupying a number of bins. 751s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1864: SyntaxWarning: invalid escape sequence '\s' 751s 'Warning: Should have \sum_n W_nk = 1. Actual column sum for state %d was %f. %d other columns have similar problems' % 751s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:1873: SyntaxWarning: invalid escape sequence '\s' 751s 'Warning: Should have \sum_k N_k W_nk = 1. Actual row sum for sample %d was %f. %d other rows have similar problems' % 751s /usr/lib/python3/dist-packages/pymbar/old_mbar.py:2078: SyntaxWarning: invalid escape sequence '\l' 751s """ 751s /usr/lib/python3/dist-packages/pymbar/testsystems/gaussian_work.py:5: SyntaxWarning: invalid escape sequence '\e' 751s """Generate samples from forward and reverse Gaussian work distributions. 751s /usr/lib/python3/dist-packages/pymbar/utils.py:230: SyntaxWarning: invalid escape sequence '\l' 751s """Compute the log of a sum of exponentiated terms exp(a_n) in a numerically-stable manner. 751s /usr/lib/python3/dist-packages/pymbar/utils.py:359: SyntaxWarning: invalid escape sequence '\s' 751s 'Warning: Should have \sum_n W_nk = 1. Actual column sum for state %d was %f. %d other columns have similar problems' % 751s /usr/lib/python3/dist-packages/pymbar/utils.py:368: SyntaxWarning: invalid escape sequence '\s' 751s 'Warning: Should have \sum_k N_k W_nk = 1. Actual row sum for sample %d was %f. %d other rows have similar problems' % 751s Setting up autopkgtest-satdep (0) ... 751s Processing triggers for man-db (2.12.1-1) ... 751s Processing triggers for libc-bin (2.39-0ubuntu8.1) ... 767s (Reading database ... 60650 files and directories currently installed.) 767s Removing autopkgtest-satdep (0) ... 784s autopkgtest [05:15:12]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pymbar; print(pymbar)" ; done 784s autopkgtest [05:15:12]: test autodep8-python3: [----------------------- 787s Testing with python3.12: 788s 788s autopkgtest [05:15:16]: test autodep8-python3: -----------------------] 792s autodep8-python3 PASS (superficial) 792s autopkgtest [05:15:20]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 796s autopkgtest [05:15:24]: @@@@@@@@@@@@@@@@@@@@ summary 796s command1 PASS 796s autodep8-python3 PASS (superficial)