0s autopkgtest [16:07:24]: starting date and time: 2024-07-22 16:07:24+0000 0s autopkgtest [16:07:24]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [16:07:24]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ug9zw6te/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:python3-defaults,src:python3-stdlib-extensions --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-defaults/3.12.4-1 python3-stdlib-extensions/3.12.4-2' -- lxd -r lxd-armhf-10.145.243.242 lxd-armhf-10.145.243.242:autopkgtest/ubuntu/oracular/armhf 53s autopkgtest [16:08:17]: testbed dpkg architecture: armhf 55s autopkgtest [16:08:19]: testbed apt version: 2.9.6 55s autopkgtest [16:08:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 63s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 63s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [400 kB] 63s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [4220 B] 63s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [59.1 kB] 63s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [89.1 kB] 63s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B] 63s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 63s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 63s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [360 kB] 63s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B] 63s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [2072 B] 63s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 65s Fetched 1059 kB in 1s (1301 kB/s) 65s Reading package lists... 84s tee: /proc/self/fd/2: Permission denied 106s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 107s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s The following packages will be upgraded: 108s cloud-init cpio dash gcc-14-base gdisk krb5-locales libbpf1 libgcc-s1 108s libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libpython3-stdlib 108s libstdc++6 libudisks2-0 libxml2 netcat-openbsd python3 python3-gdbm 108s python3-minimal udisks2 108s 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 3595 kB of archives. 108s After this operation, 69.6 kB disk space will be freed. 108s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf dash armhf 0.5.12-9ubuntu1 [81.3 kB] 109s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf python3-minimal armhf 3.12.4-1 [27.1 kB] 109s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf python3 armhf 3.12.4-1 [24.0 kB] 109s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libpython3-stdlib armhf 3.12.4-1 [9824 B] 109s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14.1.0-5ubuntu1 [49.8 kB] 109s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14.1.0-5ubuntu1 [711 kB] 109s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14.1.0-5ubuntu1 [40.8 kB] 109s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf krb5-locales all 1.21.3-3 [14.3 kB] 109s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libbpf1 armhf 1:1.4.5-1 [151 kB] 109s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [120 kB] 109s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf libkrb5-3 armhf 1.21.3-3 [313 kB] 109s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf libkrb5support0 armhf 1.21.3-3 [31.2 kB] 109s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libk5crypto3 armhf 1.21.3-3 [78.6 kB] 109s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libxml2 armhf 2.12.7+dfsg-3 [560 kB] 109s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf netcat-openbsd armhf 1.226-1.1 [42.2 kB] 109s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf cpio armhf 2.15+dfsg-1ubuntu3 [82.6 kB] 109s Get:17 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf python3-gdbm armhf 3.12.4-2 [16.9 kB] 109s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf udisks2 armhf 2.10.1-9ubuntu1 [277 kB] 109s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf libudisks2-0 armhf 2.10.1-9ubuntu1 [142 kB] 109s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf cloud-init all 24.3~1g6e4153b3-0ubuntu1 [592 kB] 109s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf gdisk armhf 1.0.10-2 [229 kB] 109s Preconfiguring packages ... 109s Fetched 3595 kB in 1s (5216 kB/s) 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 109s Preparing to unpack .../dash_0.5.12-9ubuntu1_armhf.deb ... 110s Unpacking dash (0.5.12-9ubuntu1) over (0.5.12-6ubuntu5) ... 110s Setting up dash (0.5.12-9ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 110s Preparing to unpack .../python3-minimal_3.12.4-1_armhf.deb ... 110s Unpacking python3-minimal (3.12.4-1) over (3.12.3-0ubuntu1) ... 110s Setting up python3-minimal (3.12.4-1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 110s Preparing to unpack .../python3_3.12.4-1_armhf.deb ... 110s Unpacking python3 (3.12.4-1) over (3.12.3-0ubuntu1) ... 110s Preparing to unpack .../libpython3-stdlib_3.12.4-1_armhf.deb ... 110s Unpacking libpython3-stdlib:armhf (3.12.4-1) over (3.12.3-0ubuntu1) ... 110s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_armhf.deb ... 110s Unpacking gcc-14-base:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 110s Setting up gcc-14-base:armhf (14.1.0-5ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 110s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_armhf.deb ... 110s Unpacking libstdc++6:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 110s Setting up libstdc++6:armhf (14.1.0-5ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 110s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_armhf.deb ... 110s Unpacking libgcc-s1:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ... 110s Setting up libgcc-s1:armhf (14.1.0-5ubuntu1) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 110s Preparing to unpack .../00-krb5-locales_1.21.3-3_all.deb ... 110s Unpacking krb5-locales (1.21.3-3) over (1.20.1-6ubuntu2) ... 110s Preparing to unpack .../01-libbpf1_1%3a1.4.5-1_armhf.deb ... 110s Unpacking libbpf1:armhf (1:1.4.5-1) over (1:1.4.3-1) ... 110s Preparing to unpack .../02-libgssapi-krb5-2_1.21.3-3_armhf.deb ... 110s Unpacking libgssapi-krb5-2:armhf (1.21.3-3) over (1.20.1-6ubuntu2) ... 110s Preparing to unpack .../03-libkrb5-3_1.21.3-3_armhf.deb ... 110s Unpacking libkrb5-3:armhf (1.21.3-3) over (1.20.1-6ubuntu2) ... 110s Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... 110s Unpacking libkrb5support0:armhf (1.21.3-3) over (1.20.1-6ubuntu2) ... 110s Preparing to unpack .../05-libk5crypto3_1.21.3-3_armhf.deb ... 110s Unpacking libk5crypto3:armhf (1.21.3-3) over (1.20.1-6ubuntu2) ... 110s Preparing to unpack .../06-libxml2_2.12.7+dfsg-3_armhf.deb ... 110s Unpacking libxml2:armhf (2.12.7+dfsg-3) over (2.9.14+dfsg-1.3ubuntu3) ... 110s Preparing to unpack .../07-netcat-openbsd_1.226-1.1_armhf.deb ... 110s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ... 111s Preparing to unpack .../08-cpio_2.15+dfsg-1ubuntu3_armhf.deb ... 111s Unpacking cpio (2.15+dfsg-1ubuntu3) over (2.15+dfsg-1ubuntu2) ... 111s Preparing to unpack .../09-python3-gdbm_3.12.4-2_armhf.deb ... 111s Unpacking python3-gdbm:armhf (3.12.4-2) over (3.12.3-0ubuntu1) ... 111s Preparing to unpack .../10-udisks2_2.10.1-9ubuntu1_armhf.deb ... 111s Unpacking udisks2 (2.10.1-9ubuntu1) over (2.10.1-9) ... 111s Preparing to unpack .../11-libudisks2-0_2.10.1-9ubuntu1_armhf.deb ... 111s Unpacking libudisks2-0:armhf (2.10.1-9ubuntu1) over (2.10.1-9) ... 111s Preparing to unpack .../12-cloud-init_24.3~1g6e4153b3-0ubuntu1_all.deb ... 111s Unpacking cloud-init (24.3~1g6e4153b3-0ubuntu1) over (24.2-0ubuntu1) ... 111s Preparing to unpack .../13-gdisk_1.0.10-2_armhf.deb ... 111s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ... 111s Setting up cpio (2.15+dfsg-1ubuntu3) ... 111s Setting up netcat-openbsd (1.226-1.1) ... 111s Setting up krb5-locales (1.21.3-3) ... 111s Setting up libkrb5support0:armhf (1.21.3-3) ... 111s Setting up gdisk (1.0.10-2) ... 111s Setting up libk5crypto3:armhf (1.21.3-3) ... 111s Setting up libkrb5-3:armhf (1.21.3-3) ... 111s Setting up libxml2:armhf (2.12.7+dfsg-3) ... 111s Setting up libbpf1:armhf (1:1.4.5-1) ... 111s Setting up libudisks2-0:armhf (2.10.1-9ubuntu1) ... 111s Setting up libpython3-stdlib:armhf (3.12.4-1) ... 111s Setting up udisks2 (2.10.1-9ubuntu1) ... 111s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied 111s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied 111s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied 111s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied 111s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied 111s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied 111s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied 111s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied 111s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied 111s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied 111s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied 111s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied 112s Setting up python3 (3.12.4-1) ... 112s Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... 112s Setting up cloud-init (24.3~1g6e4153b3-0ubuntu1) ... 113s Setting up python3-gdbm:armhf (3.12.4-2) ... 113s Processing triggers for rsyslog (8.2312.0-3ubuntu9) ... 114s Processing triggers for man-db (2.12.1-2) ... 114s Processing triggers for dbus (1.14.10-4ubuntu4) ... 114s Processing triggers for debianutils (5.20) ... 115s Processing triggers for libc-bin (2.39-0ubuntu9) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [16:09:22]: rebooting testbed after setup commands that affected boot 188s autopkgtest [16:10:32]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 217s autopkgtest [16:11:01]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 231s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 231s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 231s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 231s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 231s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 231s gpgv: issuer "gspr@nonempty.org" 231s gpgv: Can't check signature: No public key 231s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 231s autopkgtest [16:11:15]: testing package python-pot version 0.9.3+dfsg-2 233s autopkgtest [16:11:17]: build not needed 236s autopkgtest [16:11:20]: test upstream.sh: preparing testbed 247s Reading package lists... 247s Building dependency tree... 247s Reading state information... 248s Starting pkgProblemResolver with broken count: 0 248s Starting 2 pkgProblemResolver with broken count: 0 248s Done 248s The following additional packages will be installed: 248s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 248s python3-decorator python3-iniconfig python3-joblib python3-numpy 248s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 248s python3-sklearn python3-sklearn-lib python3-threadpoolctl 248s Suggested packages: 248s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 248s python-sklearn-doc ipython3 248s Recommended packages: 248s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 248s python3-matplotlib 248s The following NEW packages will be installed: 248s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 248s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 248s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 248s python3-sklearn python3-sklearn-lib python3-threadpoolctl 248s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 248s Need to get 29.0 MB/29.0 MB of archives. 248s After this operation, 108 MB of additional disk space will be used. 248s Get:1 /tmp/autopkgtest.wowKNR/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 249s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 249s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-5ubuntu1 [311 kB] 249s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-5ubuntu1 [125 kB] 249s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 249s Get:6 http://ftpmaster.internal/ubuntu oracular/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 249s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf python3-all armhf 3.12.4-1 [882 B] 249s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 249s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 249s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-joblib all 1.3.2-2 [208 kB] 249s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 249s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf python3-packaging all 24.1-1 [41.4 kB] 249s Get:13 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 249s Get:14 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-scipy armhf 1.12.0-2 [16.1 MB] 250s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pot armhf 0.9.3+dfsg-2 [214 kB] 250s Get:16 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pytest all 7.4.4-1 [305 kB] 250s Get:17 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 250s Get:18 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-3 [3587 kB] 250s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 250s Fetched 29.0 MB in 2s (18.3 MB/s) 250s Selecting previously unselected package libblas3:armhf. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58440 files and directories currently installed.) 250s Preparing to unpack .../00-libblas3_3.12.0-3build1_armhf.deb ... 250s Unpacking libblas3:armhf (3.12.0-3build1) ... 250s Selecting previously unselected package libgfortran5:armhf. 250s Preparing to unpack .../01-libgfortran5_14.1.0-5ubuntu1_armhf.deb ... 250s Unpacking libgfortran5:armhf (14.1.0-5ubuntu1) ... 250s Selecting previously unselected package libgomp1:armhf. 250s Preparing to unpack .../02-libgomp1_14.1.0-5ubuntu1_armhf.deb ... 250s Unpacking libgomp1:armhf (14.1.0-5ubuntu1) ... 250s Selecting previously unselected package liblapack3:armhf. 250s Preparing to unpack .../03-liblapack3_3.12.0-3build1_armhf.deb ... 250s Unpacking liblapack3:armhf (3.12.0-3build1) ... 251s Selecting previously unselected package liblbfgsb0:armhf. 251s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 251s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 251s Selecting previously unselected package python3-all. 251s Preparing to unpack .../05-python3-all_3.12.4-1_armhf.deb ... 251s Unpacking python3-all (3.12.4-1) ... 251s Selecting previously unselected package python3-decorator. 251s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 251s Unpacking python3-decorator (5.1.1-5) ... 251s Selecting previously unselected package python3-iniconfig. 251s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 251s Unpacking python3-iniconfig (1.1.1-2) ... 251s Selecting previously unselected package python3-joblib. 251s Preparing to unpack .../08-python3-joblib_1.3.2-2_all.deb ... 251s Unpacking python3-joblib (1.3.2-2) ... 251s Selecting previously unselected package python3-numpy. 251s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 251s Unpacking python3-numpy (1:1.26.4+ds-10) ... 251s Selecting previously unselected package python3-packaging. 251s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 251s Unpacking python3-packaging (24.1-1) ... 251s Selecting previously unselected package python3-pluggy. 251s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 251s Unpacking python3-pluggy (1.5.0-1) ... 251s Selecting previously unselected package python3-scipy. 251s Preparing to unpack .../12-python3-scipy_1.12.0-2_armhf.deb ... 251s Unpacking python3-scipy (1.12.0-2) ... 251s Selecting previously unselected package python3-pot. 251s Preparing to unpack .../13-python3-pot_0.9.3+dfsg-2_armhf.deb ... 251s Unpacking python3-pot (0.9.3+dfsg-2) ... 252s Selecting previously unselected package python3-pytest. 252s Preparing to unpack .../14-python3-pytest_7.4.4-1_all.deb ... 252s Unpacking python3-pytest (7.4.4-1) ... 252s Selecting previously unselected package python3-threadpoolctl. 252s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 252s Unpacking python3-threadpoolctl (3.1.0-1) ... 252s Selecting previously unselected package python3-sklearn-lib:armhf. 252s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-3_armhf.deb ... 252s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-3) ... 252s Selecting previously unselected package python3-sklearn. 252s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-3_all.deb ... 252s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 252s Selecting previously unselected package autopkgtest-satdep. 252s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 252s Unpacking autopkgtest-satdep (0) ... 252s Setting up python3-iniconfig (1.1.1-2) ... 252s Setting up python3-joblib (1.3.2-2) ... 252s Setting up python3-threadpoolctl (3.1.0-1) ... 252s Setting up python3-all (3.12.4-1) ... 252s Setting up libgomp1:armhf (14.1.0-5ubuntu1) ... 252s Setting up python3-decorator (5.1.1-5) ... 253s Setting up libblas3:armhf (3.12.0-3build1) ... 253s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 253s Setting up python3-packaging (24.1-1) ... 253s Setting up libgfortran5:armhf (14.1.0-5ubuntu1) ... 253s Setting up python3-pluggy (1.5.0-1) ... 253s Setting up liblapack3:armhf (3.12.0-3build1) ... 253s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 253s Setting up python3-pytest (7.4.4-1) ... 253s Setting up python3-numpy (1:1.26.4+ds-10) ... 255s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 255s Setting up python3-scipy (1.12.0-2) ... 259s Setting up python3-pot (0.9.3+dfsg-2) ... 259s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 259s """ 259s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 259s """ 259s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-3) ... 259s Setting up python3-sklearn (1.4.2+dfsg-3) ... 261s Setting up autopkgtest-satdep (0) ... 261s Processing triggers for man-db (2.12.1-2) ... 261s Processing triggers for libc-bin (2.39-0ubuntu9) ... 273s (Reading database ... 62031 files and directories currently installed.) 273s Removing autopkgtest-satdep (0) ... 279s autopkgtest [16:12:03]: test upstream.sh: [----------------------- 281s Running tests with Python 3.12. 283s ============================= test session starts ============================== 283s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 283s rootdir: /tmp/autopkgtest.wowKNR/autopkgtest_tmp 283s collected 586 items 283s 283s test/test_1d_solver.py ...s..s...... [ 2%] 283s test/test_backend.py .......... [ 3%] 288s test/test_bregman.py ......................................sss.......... [ 12%] 294s .....................................ss....ss..ss..s....... [ 22%] 295s test/test_coot.py ......... [ 24%] 296s test/test_da.py .....................s.. [ 28%] 296s test/test_dmmot.py .. [ 28%] 296s test/test_dr.py ssssss [ 29%] 297s test/test_factored.py .. [ 30%] 303s test/test_gaussian.py .................. [ 33%] 303s test/test_gnn.py ssss [ 33%] 311s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 311s .. [ 43%] 314s test/test_lowrank.py ........... [ 44%] 314s test/test_mapping.py sss. [ 45%] 317s test/test_optim.py ...... [ 46%] 318s test/test_ot.py ....s..........s.. [ 49%] 320s test/test_partial.py ...... [ 50%] 320s test/test_plot.py ss [ 51%] 323s test/test_regpath.py .. [ 51%] 324s test/test_sliced.py ...........s..s............. [ 56%] 324s test/test_smooth.py ... [ 56%] 326s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 328s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 332s ....ssssssss...ss............. [ 82%] 335s test/test_stochastic.py ......... [ 84%] 339s test/test_unbalanced.py ................................................ [ 92%] 354s ................ [ 95%] 355s test/test_utils.py .......................... [ 99%] 355s test/test_weak.py .. [100%] 355s 355s =============================== warnings summary =============================== 355s test/test_bregman.py: 6 warnings 355s test/test_coot.py: 1 warning 355s test/test_da.py: 3 warnings 355s test/test_gromov.py: 13 warnings 355s test/test_optim.py: 1 warning 355s test/test_partial.py: 1 warning 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 355s warnings.warn("Sinkhorn did not converge. You might want to " 355s 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 355s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 355s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 355s test/test_bregman.py::test_sinkhorn_warmstart 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 355s warnings.warn("Sinkhorn did not converge. You might want to " 355s 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 355s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 355s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 355s warnings.warn("Sinkhorn did not converge. You might want to " 355s 355s test/test_bregman.py::test_sinkhorn_empty 355s test/test_bregman.py::test_sinkhorn_variants[numpy] 355s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 355s test/test_bregman.py::test_sinkhorn_variants_log 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 355s warnings.warn("Sinkhorn did not converge. You might want to " 355s 355s test/test_coot.py::test_coot[numpy-False] 355s test/test_coot.py::test_coot[numpy-True] 355s test/test_coot.py::test_coot[numpy-1] 355s test/test_coot.py::test_coot[numpy-0] 355s test/test_coot.py::test_coot_warmstart[numpy] 355s test/test_coot.py::test_coot_log[numpy] 355s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 355s result_code_string = check_result(result_code) 355s 355s test/test_gromov.py::test_gromov_integer_warnings[numpy] 355s /tmp/autopkgtest.wowKNR/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 355s G = ot.gromov.gromov_wasserstein( 355s 355s test/test_gromov.py::test_gromov_integer_warnings[numpy] 355s /tmp/autopkgtest.wowKNR/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 355s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 355s 355s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 355s return np.log(a) 355s 355s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 355s v = b / KtransposeU 355s 355s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 355s v = b / KtransposeU 355s 355s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 355s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 355s warnings.warn('Warning: numerical errors at iteration %d' % ii) 355s 355s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 355s warnings.warn("Solver failed to produce a transport plan. You might " 355s 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 355s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 355s 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s test/test_gromov.py::test_pointwise_gromov[numpy] 355s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 355s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 355s 355s test/test_gromov.py: 400 warnings 355s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 355s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 355s 355s test/test_gromov.py: 400 warnings 355s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 355s index[1] = generator.choice( 355s 355s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 355s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 355s warnings.warn("Solver failed to produce a transport plan. You might " 355s 355s test/test_gromov.py::test_fgw_integer_warnings[numpy] 355s /tmp/autopkgtest.wowKNR/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 355s G, log = ot.gromov.fused_gromov_wasserstein( 355s 355s test/test_gromov.py::test_fgw_integer_warnings[numpy] 355s /tmp/autopkgtest.wowKNR/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 355s Gb, logb = ot.gromov.fused_gromov_wasserstein( 355s 355s test/test_mapping.py::test_joint_OT_mapping 355s /usr/lib/python3/dist-packages/ot/mapping.py:557: RuntimeWarning: invalid value encountered in scalar divide 355s if abs(vloss[-1] - vloss[-2]) / abs(vloss[-2]) < stopThr: 355s 355s test/test_mapping.py::test_joint_OT_mapping 355s /usr/lib/python3/dist-packages/ot/mapping.py:565: RuntimeWarning: invalid value encountered in scalar divide 355s it, vloss[-1], (vloss[-1] - vloss[-2]) / abs(vloss[-2]))) 355s 355s test/test_regpath.py: 232 warnings 355s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 355s M[-1, -1] = 1 / s 355s 355s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 355s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 355s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 355s 355s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 355s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 355s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 355s 355s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 355s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 355s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 355s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 355s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 355s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 355s 355s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 355s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 355s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 355s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 355s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 355s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 355s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 355s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 355s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 355s 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 355s v = (b / Ktu) ** fi_2 355s 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 355s warnings.warn('Numerical errors at iteration %s' % i) 355s 355s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 355s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 355s 355s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 355s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 355s warnings.warn("The div parameter should be either equal to 'kl' or \ 355s 355s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 355s ===== 512 passed, 70 skipped, 4 xfailed, 1123 warnings in 73.05s (0:01:13) ===== 355s ********** 356s autopkgtest [16:13:20]: test upstream.sh: -----------------------] 360s autopkgtest [16:13:24]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 360s upstream.sh PASS 364s autopkgtest [16:13:28]: @@@@@@@@@@@@@@@@@@@@ summary 364s upstream.sh PASS