0s autopkgtest [04:03:52]: starting date and time: 2024-07-13 04:03:52+0000 0s autopkgtest [04:03:52]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [04:03:52]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fb1ryprc/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade python-pot --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- lxd -r lxd-armhf-10.145.243.202 lxd-armhf-10.145.243.202:autopkgtest/ubuntu/oracular/armhf 88s autopkgtest [04:05:20]: testbed dpkg architecture: armhf 93s autopkgtest [04:05:25]: testbed apt version: 2.9.6 93s autopkgtest [04:05:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 108s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.2 kB] 108s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 108s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [364 kB] 108s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3860 B] 108s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [77.8 kB] 108s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B] 108s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 108s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 108s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [348 kB] 108s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B] 108s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [2088 B] 108s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 113s Fetched 989 kB in 6s (177 kB/s) 113s Reading package lists... 132s tee: /proc/self/fd/2: Permission denied 155s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 155s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 156s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 156s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 157s Reading package lists... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade... 158s The following packages will be upgraded: 158s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 158s openssh-server openssh-sftp-server openssl telnet 159s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s Need to get 11.9 MB of archives. 159s After this operation, 285 kB of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 159s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 159s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 159s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 159s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 159s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 159s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 159s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 159s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 159s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 160s Preconfiguring packages ... 160s Fetched 11.9 MB in 1s (12.6 MB/s) 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 160s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 160s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 160s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 161s Error: Could not restart systemd, systemd binary not working 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 161s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 161s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 161s Setting up libc-bin (2.39-3.1ubuntu3) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 161s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 161s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 161s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 161s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 161s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 161s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 161s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 161s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 161s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 161s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 161s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 162s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 162s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 162s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 162s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 162s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 162s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 162s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 162s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 162s Setting up locales (2.39-3.1ubuntu3) ... 163s Generating locales (this might take a while)... 165s en_US.UTF-8... done 165s Generation complete. 165s Setting up openssl (3.2.2-1ubuntu1) ... 165s Installing new version of config file /etc/ssl/openssl.cnf ... 165s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 165s Setting up telnet (0.17+2.5-5ubuntu1) ... 165s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 165s Installing new version of config file /etc/pam.d/sshd ... 166s Processing triggers for ufw (0.36.2-6) ... 166s Processing triggers for systemd (256-1ubuntu1) ... 167s Processing triggers for man-db (2.12.1-2) ... 168s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s autopkgtest [04:06:43]: rebooting testbed after setup commands that affected boot 245s autopkgtest [04:07:57]: testbed running kernel: Linux 6.5.0-35-generic #35~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue May 7 11:19:33 UTC 2 274s autopkgtest [04:08:26]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pot 289s Get:1 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (dsc) [2114 B] 289s Get:2 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (tar) [877 kB] 289s Get:3 http://ftpmaster.internal/ubuntu oracular/universe python-pot 0.9.3+dfsg-2 (diff) [4524 B] 289s gpgv: Signature made Thu Apr 18 12:47:08 2024 UTC 289s gpgv: using RSA key CFC5EF8510851E7355B55E809D11582AFD548CFA 289s gpgv: issuer "gspr@nonempty.org" 289s gpgv: Can't check signature: No public key 289s dpkg-source: warning: cannot verify inline signature for ./python-pot_0.9.3+dfsg-2.dsc: no acceptable signature found 290s autopkgtest [04:08:42]: testing package python-pot version 0.9.3+dfsg-2 292s autopkgtest [04:08:44]: build not needed 294s autopkgtest [04:08:46]: test upstream.sh: preparing testbed 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 306s Starting pkgProblemResolver with broken count: 0 306s Starting 2 pkgProblemResolver with broken count: 0 306s Done 307s The following additional packages will be installed: 307s libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 python3-all 307s python3-decorator python3-iniconfig python3-joblib python3-numpy 307s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 307s python3-sklearn python3-sklearn-lib python3-threadpoolctl 307s Suggested packages: 307s gcc gfortran python-numpy-doc python3-dev python-scipy-doc python3-dap 307s python-sklearn-doc ipython3 307s Recommended packages: 307s python3-simplejson python3-psutil g++ | c++-compiler python3-pil 307s python3-matplotlib 307s The following NEW packages will be installed: 307s autopkgtest-satdep libblas3 libgfortran5 libgomp1 liblapack3 liblbfgsb0 307s python3-all python3-decorator python3-iniconfig python3-joblib python3-numpy 307s python3-packaging python3-pluggy python3-pot python3-pytest python3-scipy 307s python3-sklearn python3-sklearn-lib python3-threadpoolctl 307s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded. 307s Need to get 29.0 MB/29.0 MB of archives. 307s After this operation, 108 MB of additional disk space will be used. 307s Get:1 /tmp/autopkgtest.x71Hgb/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 307s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 307s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 307s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB] 307s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 308s Get:6 http://ftpmaster.internal/ubuntu oracular/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB] 308s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf python3-all armhf 3.12.3-0ubuntu1 [886 B] 308s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB] 308s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-iniconfig all 1.1.1-2 [6024 B] 308s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-joblib all 1.3.2-2 [208 kB] 308s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 308s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf python3-packaging all 24.1-1 [41.4 kB] 308s Get:13 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pluggy all 1.5.0-1 [21.0 kB] 308s Get:14 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-scipy armhf 1.12.0-2 [16.1 MB] 309s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pot armhf 0.9.3+dfsg-2 [214 kB] 309s Get:16 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pytest all 7.4.4-1 [305 kB] 309s Get:17 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB] 309s Get:18 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-3 [3587 kB] 309s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn all 1.4.2+dfsg-3 [2257 kB] 315s Fetched 29.0 MB in 3s (10.5 MB/s) 316s Selecting previously unselected package libblas3:armhf. 316s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 316s Preparing to unpack .../00-libblas3_3.12.0-3build1_armhf.deb ... 316s Unpacking libblas3:armhf (3.12.0-3build1) ... 316s Selecting previously unselected package libgfortran5:armhf. 316s Preparing to unpack .../01-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 316s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 317s Selecting previously unselected package libgomp1:armhf. 317s Preparing to unpack .../02-libgomp1_14.1.0-1ubuntu1_armhf.deb ... 317s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ... 317s Selecting previously unselected package liblapack3:armhf. 317s Preparing to unpack .../03-liblapack3_3.12.0-3build1_armhf.deb ... 317s Unpacking liblapack3:armhf (3.12.0-3build1) ... 317s Selecting previously unselected package liblbfgsb0:armhf. 318s Preparing to unpack .../04-liblbfgsb0_3.0+dfsg.4-1build1_armhf.deb ... 318s Unpacking liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 318s Selecting previously unselected package python3-all. 319s Preparing to unpack .../05-python3-all_3.12.3-0ubuntu1_armhf.deb ... 319s Unpacking python3-all (3.12.3-0ubuntu1) ... 319s Selecting previously unselected package python3-decorator. 319s Preparing to unpack .../06-python3-decorator_5.1.1-5_all.deb ... 319s Unpacking python3-decorator (5.1.1-5) ... 319s Selecting previously unselected package python3-iniconfig. 319s Preparing to unpack .../07-python3-iniconfig_1.1.1-2_all.deb ... 319s Unpacking python3-iniconfig (1.1.1-2) ... 319s Selecting previously unselected package python3-joblib. 319s Preparing to unpack .../08-python3-joblib_1.3.2-2_all.deb ... 319s Unpacking python3-joblib (1.3.2-2) ... 319s Selecting previously unselected package python3-numpy. 319s Preparing to unpack .../09-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 319s Unpacking python3-numpy (1:1.26.4+ds-10) ... 320s Selecting previously unselected package python3-packaging. 320s Preparing to unpack .../10-python3-packaging_24.1-1_all.deb ... 320s Unpacking python3-packaging (24.1-1) ... 320s Selecting previously unselected package python3-pluggy. 320s Preparing to unpack .../11-python3-pluggy_1.5.0-1_all.deb ... 320s Unpacking python3-pluggy (1.5.0-1) ... 320s Selecting previously unselected package python3-scipy. 320s Preparing to unpack .../12-python3-scipy_1.12.0-2_armhf.deb ... 320s Unpacking python3-scipy (1.12.0-2) ... 320s Selecting previously unselected package python3-pot. 320s Preparing to unpack .../13-python3-pot_0.9.3+dfsg-2_armhf.deb ... 320s Unpacking python3-pot (0.9.3+dfsg-2) ... 320s Selecting previously unselected package python3-pytest. 321s Preparing to unpack .../14-python3-pytest_7.4.4-1_all.deb ... 321s Unpacking python3-pytest (7.4.4-1) ... 321s Selecting previously unselected package python3-threadpoolctl. 321s Preparing to unpack .../15-python3-threadpoolctl_3.1.0-1_all.deb ... 321s Unpacking python3-threadpoolctl (3.1.0-1) ... 321s Selecting previously unselected package python3-sklearn-lib:armhf. 321s Preparing to unpack .../16-python3-sklearn-lib_1.4.2+dfsg-3_armhf.deb ... 321s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-3) ... 321s Selecting previously unselected package python3-sklearn. 321s Preparing to unpack .../17-python3-sklearn_1.4.2+dfsg-3_all.deb ... 321s Unpacking python3-sklearn (1.4.2+dfsg-3) ... 321s Selecting previously unselected package autopkgtest-satdep. 322s Preparing to unpack .../18-1-autopkgtest-satdep.deb ... 322s Unpacking autopkgtest-satdep (0) ... 322s Setting up python3-iniconfig (1.1.1-2) ... 322s Setting up python3-joblib (1.3.2-2) ... 324s Setting up python3-threadpoolctl (3.1.0-1) ... 324s Setting up python3-all (3.12.3-0ubuntu1) ... 324s Setting up libgomp1:armhf (14.1.0-1ubuntu1) ... 324s Setting up python3-decorator (5.1.1-5) ... 324s Setting up libblas3:armhf (3.12.0-3build1) ... 324s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 324s Setting up python3-packaging (24.1-1) ... 324s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ... 324s Setting up python3-pluggy (1.5.0-1) ... 324s Setting up liblapack3:armhf (3.12.0-3build1) ... 324s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 324s Setting up python3-pytest (7.4.4-1) ... 324s Setting up python3-numpy (1:1.26.4+ds-10) ... 326s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ... 326s Setting up python3-scipy (1.12.0-2) ... 330s Setting up python3-pot (0.9.3+dfsg-2) ... 331s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:62: SyntaxWarning: invalid escape sequence '\o' 331s """ 331s /usr/lib/python3/dist-packages/ot/gnn/_layers.py:189: SyntaxWarning: invalid escape sequence '\o' 331s """ 331s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-3) ... 331s Setting up python3-sklearn (1.4.2+dfsg-3) ... 333s Setting up autopkgtest-satdep (0) ... 333s Processing triggers for man-db (2.12.1-2) ... 333s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 366s (Reading database ... 62027 files and directories currently installed.) 366s Removing autopkgtest-satdep (0) ... 379s autopkgtest [04:10:11]: test upstream.sh: [----------------------- 395s Running tests with Python 3.12. 423s ============================= test session starts ============================== 423s platform linux -- Python 3.12.4, pytest-7.4.4, pluggy-1.5.0 423s rootdir: /tmp/autopkgtest.x71Hgb/autopkgtest_tmp 423s collected 586 items 423s 423s test/test_1d_solver.py ...s..s...... [ 2%] 424s test/test_backend.py .......... [ 3%] 429s test/test_bregman.py ......................................sss.......... [ 12%] 435s .....................................ss....ss..ss..s....... [ 22%] 437s test/test_coot.py ......... [ 24%] 438s test/test_da.py .....................s.. [ 28%] 438s test/test_dmmot.py .. [ 28%] 438s test/test_dr.py ssssss [ 29%] 439s test/test_factored.py .. [ 30%] 445s test/test_gaussian.py .................. [ 33%] 445s test/test_gnn.py ssss [ 33%] 454s test/test_gromov.py ....s....x..x..x.............................x...... [ 42%] 454s .. [ 43%] 458s test/test_lowrank.py ........... [ 44%] 458s test/test_mapping.py sss. [ 45%] 461s test/test_optim.py ...... [ 46%] 463s test/test_ot.py ....s..........s.. [ 49%] 464s test/test_partial.py ...... [ 50%] 464s test/test_plot.py ss [ 51%] 502s test/test_regpath.py .. [ 51%] 503s test/test_sliced.py ...........s..s............. [ 56%] 503s test/test_smooth.py ... [ 56%] 505s test/test_solvers.py ........................s.....s.....s.............. [ 65%] 507s ............ssssssss........ssssssss........................ssssssss.... [ 77%] 512s ....ssssssss...ss............. [ 82%] 515s test/test_stochastic.py ......... [ 84%] 518s test/test_unbalanced.py ................................................ [ 92%] 533s ................ [ 95%] 534s test/test_utils.py .......................... [ 99%] 534s test/test_weak.py .. [100%] 534s 534s =============================== warnings summary =============================== 534s test/test_bregman.py: 6 warnings 534s test/test_coot.py: 1 warning 534s test/test_da.py: 2 warnings 534s test/test_gromov.py: 13 warnings 534s test/test_optim.py: 1 warning 534s test/test_partial.py: 1 warning 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:531: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 534s warnings.warn("Sinkhorn did not converge. You might want to " 534s 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-True] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-True-False] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-True] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_stabilized-False-False] 534s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_stabilized] 534s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_epsilon_scaling] 534s test/test_bregman.py::test_sinkhorn_warmstart 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:1145: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 534s warnings.warn("Sinkhorn did not converge. You might want to " 534s 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-True] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-True-False] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-True] 534s test/test_bregman.py::test_sinkhorn_multi_b[sinkhorn_log-False-False] 534s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-sinkhorn_log] 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:747: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 534s warnings.warn("Sinkhorn did not converge. You might want to " 534s 534s test/test_bregman.py::test_sinkhorn_empty 534s test/test_bregman.py::test_sinkhorn_variants[numpy] 534s test/test_bregman.py::test_sinkhorn_variants_dtype_device[numpy-greenkhorn] 534s test/test_bregman.py::test_sinkhorn_variants_log 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:919: UserWarning: Sinkhorn did not converge. You might want to increase the number of iterations `numItermax` or the regularization parameter `reg`. 534s warnings.warn("Sinkhorn did not converge. You might want to " 534s 534s test/test_coot.py::test_coot[numpy-False] 534s test/test_coot.py::test_coot[numpy-True] 534s test/test_coot.py::test_coot[numpy-1] 534s test/test_coot.py::test_coot[numpy-0] 534s test/test_coot.py::test_coot_warmstart[numpy] 534s test/test_coot.py::test_coot_log[numpy] 534s /usr/lib/python3/dist-packages/ot/lp/__init__.py:354: UserWarning: numItermax reached before optimality. Try to increase numItermax. 534s result_code_string = check_result(result_code) 534s 534s test/test_gromov.py::test_gromov_integer_warnings[numpy] 534s /tmp/autopkgtest.x71Hgb/autopkgtest_tmp/test/test_gromov.py:145: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 534s G = ot.gromov.gromov_wasserstein( 534s 534s test/test_gromov.py::test_gromov_integer_warnings[numpy] 534s /tmp/autopkgtest.x71Hgb/autopkgtest_tmp/test/test_gromov.py:148: UserWarning: Input structure matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input structure matrix consists of floating point elements. 534s Gb = nx.to_numpy(ot.gromov.gromov_wasserstein( 534s 534s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/backend.py:1143: RuntimeWarning: divide by zero encountered in log 534s return np.log(a) 534s 534s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: divide by zero encountered in divide 534s v = b / KtransposeU 534s 534s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:498: RuntimeWarning: overflow encountered in divide 534s v = b / KtransposeU 534s 534s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 534s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/bregman/_sinkhorn.py:506: UserWarning: Warning: numerical errors at iteration 0 534s warnings.warn('Warning: numerical errors at iteration %d' % ii) 534s 534s test/test_gromov.py::test_entropic_fgw_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:1045: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 534s warnings.warn("Solver failed to produce a transport plan. You might " 534s 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:222: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 534s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 534s 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s test/test_gromov.py::test_pointwise_gromov[numpy] 534s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:223: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 534s index[1] = generator.choice(len_q, size=1, p=nx.to_numpy(q)) 534s 534s test/test_gromov.py: 400 warnings 534s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:228: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 534s index[0] = generator.choice(len_p, size=1, p=nx.to_numpy(p)) 534s 534s test/test_gromov.py: 400 warnings 534s /usr/lib/python3/dist-packages/ot/gromov/_estimators.py:230: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 534s index[1] = generator.choice( 534s 534s test/test_gromov.py::test_gromov_entropic_barycenter[numpy] 534s /usr/lib/python3/dist-packages/ot/gromov/_bregman.py:218: UserWarning: Solver failed to produce a transport plan. You might want to increase the regularization parameter `epsilon`. 534s warnings.warn("Solver failed to produce a transport plan. You might " 534s 534s test/test_gromov.py::test_fgw_integer_warnings[numpy] 534s /tmp/autopkgtest.x71Hgb/autopkgtest_tmp/test/test_gromov.py:1580: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 534s G, log = ot.gromov.fused_gromov_wasserstein( 534s 534s test/test_gromov.py::test_fgw_integer_warnings[numpy] 534s /tmp/autopkgtest.x71Hgb/autopkgtest_tmp/test/test_gromov.py:1583: UserWarning: Input feature matrix consists of integer. The transport plan will be casted accordingly, possibly resulting in a loss of precision. If this behaviour is unwanted, please make sure your input feature matrix consists of floating point elements. 534s Gb, logb = ot.gromov.fused_gromov_wasserstein( 534s 534s test/test_mapping.py::test_joint_OT_mapping 534s /usr/lib/python3/dist-packages/ot/mapping.py:557: RuntimeWarning: invalid value encountered in scalar divide 534s if abs(vloss[-1] - vloss[-2]) / abs(vloss[-2]) < stopThr: 534s 534s test/test_mapping.py::test_joint_OT_mapping 534s /usr/lib/python3/dist-packages/ot/mapping.py:565: RuntimeWarning: invalid value encountered in scalar divide 534s it, vloss[-1], (vloss[-1] - vloss[-2]) / abs(vloss[-2]))) 534s 534s test/test_regpath.py: 232 warnings 534s /usr/lib/python3/dist-packages/ot/regpath.py:488: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) 534s M[-1, -1] = 1 / s 534s 534s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 534s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: divide by zero encountered in divide 534s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 534s 534s test/test_sliced.py::test_sliced_sphere_backend_type_devices[numpy] 534s /usr/lib/python3/dist-packages/ot/lp/solver_1d.py:733: RuntimeWarning: invalid value encountered in divide 534s tc[mask_end > 0] = ((Ctp - Ctm + tm * dCptm - tp * dCmtp) / (dCptm - dCmtp))[mask_end > 0] 534s 534s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 534s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 534s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 534s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-1] 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 534s test/test_unbalanced.py::test_unbalanced_multiple_inputs[numpy-sinkhorn_reg_scaling] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:158: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 534s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 534s 534s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-kl] 534s test/test_unbalanced.py::test_unbalanced_convergence[numpy-sinkhorn_reg_scaling-entropy] 534s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-kl] 534s test/test_unbalanced.py::test_unbalanced_warmstart[numpy-sinkhorn_reg_scaling-entropy] 534s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-True] 534s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-kl-False] 534s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-True] 534s test/test_unbalanced.py::test_sinkhorn_unbalanced2[numpy-sinkhorn_reg_scaling-entropy-False] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:295: UserWarning: Method not implemented yet. Using classic Sinkhorn-Knopp 534s warnings.warn('Method not implemented yet. Using classic Sinkhorn-Knopp') 534s 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:487: RuntimeWarning: overflow encountered in divide 534s v = (b / Ktu) ** fi_2 534s 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn-inf] 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_reg_scaling-inf] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:494: UserWarning: Numerical errors at iteration 180 534s warnings.warn('Numerical errors at iteration %s' % i) 534s 534s test/test_unbalanced.py::test_unbalanced_relaxation_parameters[numpy-sinkhorn_stabilized-inf] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:748: UserWarning: Stabilized Unbalanced Sinkhorn did not converge.Try a larger entropy `reg` or a lower mass `reg_m`.Or a larger absorption threshold `tau`. 534s warnings.warn("Stabilized Unbalanced Sinkhorn did not converge." + 534s 534s test/test_unbalanced.py::test_mm_wrong_divergence[numpy] 534s /usr/lib/python3/dist-packages/ot/unbalanced.py:1263: UserWarning: The div parameter should be either equal to 'kl' or 'l2': it has been set to 'kl'. 534s warnings.warn("The div parameter should be either equal to 'kl' or \ 534s 534s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 534s ==== 512 passed, 70 skipped, 4 xfailed, 1122 warnings in 111.81s (0:01:51) ===== 534s ********** 535s autopkgtest [04:12:47]: test upstream.sh: -----------------------] 539s autopkgtest [04:12:51]: test upstream.sh: - - - - - - - - - - results - - - - - - - - - - 539s upstream.sh PASS 544s autopkgtest [04:12:56]: @@@@@@@@@@@@@@@@@@@@ summary 544s upstream.sh PASS