0s autopkgtest [02:49:25]: starting date and time: 2024-07-13 02:49:25+0000 0s autopkgtest [02:49:25]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [02:49:25]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cjudp5pj/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade pybigwig --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- lxd -r lxd-armhf-10.145.243.39 lxd-armhf-10.145.243.39:autopkgtest/ubuntu/oracular/armhf 55s autopkgtest [02:50:20]: testbed dpkg architecture: armhf 57s autopkgtest [02:50:22]: testbed apt version: 2.9.6 57s autopkgtest [02:50:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 65s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 65s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.2 kB] 65s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3860 B] 65s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [364 kB] 66s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [76.5 kB] 66s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B] 66s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 66s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 66s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [346 kB] 66s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B] 66s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [2088 B] 66s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 68s Fetched 986 kB in 1s (1156 kB/s) 68s Reading package lists... 85s tee: /proc/self/fd/2: Permission denied 102s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 102s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 102s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 102s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 104s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 106s The following packages will be upgraded: 106s libc-bin libc6 locales 106s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 7572 kB of archives. 106s After this operation, 17.4 kB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 107s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 107s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 107s Preconfiguring packages ... 108s Fetched 7572 kB in 1s (8802 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 108s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 108s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 108s Error: Could not restart systemd, systemd binary not working 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 108s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 108s Setting up libc-bin (2.39-3.1ubuntu3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 109s Preparing to unpack .../locales_2.39-3.1ubuntu3_all.deb ... 109s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 109s Setting up locales (2.39-3.1ubuntu3) ... 110s Generating locales (this might take a while)... 113s en_US.UTF-8... done 113s Generation complete. 113s Processing triggers for systemd (256-1ubuntu1) ... 114s Processing triggers for man-db (2.12.1-2) ... 115s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s autopkgtest [02:51:24]: rebooting testbed after setup commands that affected boot 187s autopkgtest [02:52:32]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 214s autopkgtest [02:52:59]: @@@@@@@@@@@@@@@@@@@@ apt-source pybigwig 224s Get:1 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (dsc) [2246 B] 224s Get:2 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (tar) [31.6 kB] 224s Get:3 http://ftpmaster.internal/ubuntu oracular/universe pybigwig 0.3.22+dfsg-1build3 (diff) [4424 B] 224s gpgv: Signature made Mon Apr 1 07:17:01 2024 UTC 224s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 224s gpgv: Can't check signature: No public key 224s dpkg-source: warning: cannot verify inline signature for ./pybigwig_0.3.22+dfsg-1build3.dsc: no acceptable signature found 224s autopkgtest [02:53:09]: testing package pybigwig version 0.3.22+dfsg-1build3 226s autopkgtest [02:53:11]: build not needed 228s autopkgtest [02:53:13]: test command1: preparing testbed 239s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Starting pkgProblemResolver with broken count: 0 240s Starting 2 pkgProblemResolver with broken count: 0 240s Done 242s The following additional packages will be installed: 242s libbigwig0t64 libblas3 libgfortran5 liblapack3 libpython3.12t64 python3-all 242s python3-numpy python3-pybigwig 242s Suggested packages: 242s gcc gfortran python-numpy-doc python3-dev python3-pytest 242s The following NEW packages will be installed: 242s autopkgtest-satdep libbigwig0t64 libblas3 libgfortran5 liblapack3 242s libpython3.12t64 python3-all python3-numpy python3-pybigwig 242s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 242s Need to get 8174 kB/8175 kB of archives. 242s After this operation, 28.1 MB of additional disk space will be used. 242s Get:1 /tmp/autopkgtest.Ay4odk/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [716 B] 242s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf libbigwig0t64 armhf 0.4.7+dfsg-3.1build2 [27.0 kB] 242s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB] 242s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB] 242s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB] 242s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libpython3.12t64 armhf 3.12.4-1ubuntu1 [2050 kB] 243s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf python3-all armhf 3.12.3-0ubuntu1 [886 B] 243s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB] 243s Get:9 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pybigwig armhf 0.3.22+dfsg-1build3 [36.8 kB] 243s Fetched 8174 kB in 1s (8362 kB/s) 243s Selecting previously unselected package libbigwig0t64:armhf. 243s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 243s Preparing to unpack .../0-libbigwig0t64_0.4.7+dfsg-3.1build2_armhf.deb ... 243s Unpacking libbigwig0t64:armhf (0.4.7+dfsg-3.1build2) ... 243s Selecting previously unselected package libblas3:armhf. 243s Preparing to unpack .../1-libblas3_3.12.0-3build1_armhf.deb ... 244s Unpacking libblas3:armhf (3.12.0-3build1) ... 244s Selecting previously unselected package libgfortran5:armhf. 244s Preparing to unpack .../2-libgfortran5_14.1.0-1ubuntu1_armhf.deb ... 244s Unpacking libgfortran5:armhf (14.1.0-1ubuntu1) ... 244s Selecting previously unselected package liblapack3:armhf. 244s Preparing to unpack .../3-liblapack3_3.12.0-3build1_armhf.deb ... 244s Unpacking liblapack3:armhf (3.12.0-3build1) ... 244s Selecting previously unselected package libpython3.12t64:armhf. 244s Preparing to unpack .../4-libpython3.12t64_3.12.4-1ubuntu1_armhf.deb ... 244s Unpacking libpython3.12t64:armhf (3.12.4-1ubuntu1) ... 244s Selecting previously unselected package python3-all. 244s Preparing to unpack .../5-python3-all_3.12.3-0ubuntu1_armhf.deb ... 244s Unpacking python3-all (3.12.3-0ubuntu1) ... 244s Selecting previously unselected package python3-numpy. 244s Preparing to unpack .../6-python3-numpy_1%3a1.26.4+ds-10_armhf.deb ... 244s Unpacking python3-numpy (1:1.26.4+ds-10) ... 244s Selecting previously unselected package python3-pybigwig. 244s Preparing to unpack .../7-python3-pybigwig_0.3.22+dfsg-1build3_armhf.deb ... 244s Unpacking python3-pybigwig (0.3.22+dfsg-1build3) ... 244s Selecting previously unselected package autopkgtest-satdep. 244s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 244s Unpacking autopkgtest-satdep (0) ... 244s Setting up python3-all (3.12.3-0ubuntu1) ... 244s Setting up libpython3.12t64:armhf (3.12.4-1ubuntu1) ... 244s Setting up libblas3:armhf (3.12.0-3build1) ... 244s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode 244s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ... 244s Setting up libbigwig0t64:armhf (0.4.7+dfsg-3.1build2) ... 244s Setting up liblapack3:armhf (3.12.0-3build1) ... 244s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode 244s Setting up python3-numpy (1:1.26.4+ds-10) ... 247s Setting up python3-pybigwig (0.3.22+dfsg-1build3) ... 247s Setting up autopkgtest-satdep (0) ... 247s Processing triggers for man-db (2.12.1-2) ... 247s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 260s (Reading database ... 59362 files and directories currently installed.) 260s Removing autopkgtest-satdep (0) ... 266s autopkgtest [02:53:51]: test command1: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd pyBigWigTest ; $py test.py ; cd .. ; done 266s autopkgtest [02:53:51]: test command1: [----------------------- 269s autopkgtest [02:53:54]: test command1: -----------------------] 273s autopkgtest [02:53:58]: test command1: - - - - - - - - - - results - - - - - - - - - - 273s command1 PASS 277s autopkgtest [02:54:02]: @@@@@@@@@@@@@@@@@@@@ summary 277s command1 PASS