0s autopkgtest [20:14:06]: starting date and time: 2024-07-26 20:14:06+0000
  0s autopkgtest [20:14:06]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [20:14:06]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ixs2kf9f/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:boost1.83 --apt-upgrade prime-phylo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-3ubuntu2 -- lxd -r lxd-armhf-10.145.243.9 lxd-armhf-10.145.243.9:autopkgtest/ubuntu/oracular/armhf
 52s autopkgtest [20:14:58]: testbed dpkg architecture: armhf
 54s autopkgtest [20:15:00]: testbed apt version: 2.9.6
 54s autopkgtest [20:15:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 61s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
 62s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [53.5 kB]
 62s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [7252 B]
 62s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
 62s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [417 kB]
 62s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [69.5 kB]
 62s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B]
 62s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B]
 62s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B]
 62s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [347 kB]
 62s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B]
 62s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [3672 B]
 62s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B]
 64s Fetched 1043 kB in 1s (1207 kB/s)
 64s Reading package lists...
 80s tee: /proc/self/fd/2: Permission denied
102s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
102s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
102s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
102s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
104s Reading package lists...
104s Reading package lists...
104s Building dependency tree...
104s Reading state information...
105s Calculating upgrade...
105s The following package was automatically installed and is no longer required:
105s   python3-six
105s Use 'apt autoremove' to remove it.
105s The following packages will be upgraded:
105s   bind9-dnsutils bind9-host bind9-libs cloud-init dmsetup gcc-14-base gdisk
105s   kpartx libbpf1 libdevmapper1.02.1 libgcc-s1 liblz4-1 libnspr4 libp11-kit0
105s   libstdc++6 libudisks2-0 libxml2 logrotate mawk multipath-tools
105s   netcat-openbsd networkd-dispatcher pci.ids python3-launchpadlib rsyslog
105s   strace systemd-hwe-hwdb ubuntu-pro-client ubuntu-pro-client-l10n udisks2
105s 30 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
105s Need to get 6826 kB of archives.
105s After this operation, 18.4 kB of additional disk space will be used.
105s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-14-base armhf 14.1.0-5ubuntu1 [49.8 kB]
105s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++6 armhf 14.1.0-5ubuntu1 [711 kB]
106s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-s1 armhf 14.1.0-5ubuntu1 [40.8 kB]
106s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf liblz4-1 armhf 1.9.4-3 [52.7 kB]
106s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libp11-kit0 armhf 0.25.5-2ubuntu1 [259 kB]
106s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf mawk armhf 1.3.4.20240622-2 [115 kB]
106s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libdevmapper1.02.1 armhf 2:1.02.196-1ubuntu1 [135 kB]
106s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf dmsetup armhf 2:1.02.196-1ubuntu1 [81.3 kB]
106s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libbpf1 armhf 1:1.4.5-1 [151 kB]
106s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf libxml2 armhf 2.12.7+dfsg-3 [560 kB]
106s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf logrotate armhf 3.22.0-1 [51.5 kB]
106s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf netcat-openbsd armhf 1.226-1.1 [42.2 kB]
106s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf networkd-dispatcher all 2.2.4-1.1 [15.6 kB]
106s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf rsyslog armhf 8.2406.0-1ubuntu1 [461 kB]
106s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf systemd-hwe-hwdb all 256.2.1 [3210 B]
106s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-pro-client-l10n armhf 33.2 [19.2 kB]
106s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf ubuntu-pro-client armhf 33.2 [232 kB]
106s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-dnsutils armhf 1:9.18.28-0ubuntu1 [149 kB]
106s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-host armhf 1:9.18.28-0ubuntu1 [47.5 kB]
106s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf bind9-libs armhf 1:9.18.28-0ubuntu1 [1156 kB]
106s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf pci.ids all 0.0~2024.06.23-1 [278 kB]
106s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf strace armhf 6.8-2 [427 kB]
106s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf libnspr4 armhf 2:4.35-1.1ubuntu1 [93.3 kB]
106s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf udisks2 armhf 2.10.1-9ubuntu1 [277 kB]
106s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf libudisks2-0 armhf 2.10.1-9ubuntu1 [142 kB]
106s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf python3-launchpadlib all 2.0.0-1 [126 kB]
106s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf cloud-init all 24.3~1g6e4153b3-0ubuntu1 [592 kB]
106s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf gdisk armhf 1.0.10-2 [229 kB]
106s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf kpartx armhf 0.9.9-1ubuntu2 [34.6 kB]
106s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf multipath-tools armhf 0.9.9-1ubuntu2 [292 kB]
107s Preconfiguring packages ...
107s Fetched 6826 kB in 1s (7449 kB/s)
107s (Reading database ... 
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(Reading database ... 58436 files and directories currently installed.)
107s Preparing to unpack .../gcc-14-base_14.1.0-5ubuntu1_armhf.deb ...
107s Unpacking gcc-14-base:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ...
107s Setting up gcc-14-base:armhf (14.1.0-5ubuntu1) ...
107s (Reading database ... 
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107s Preparing to unpack .../libstdc++6_14.1.0-5ubuntu1_armhf.deb ...
107s Unpacking libstdc++6:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ...
107s Setting up libstdc++6:armhf (14.1.0-5ubuntu1) ...
107s (Reading database ... 
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107s Preparing to unpack .../libgcc-s1_14.1.0-5ubuntu1_armhf.deb ...
107s Unpacking libgcc-s1:armhf (14.1.0-5ubuntu1) over (14.1.0-4ubuntu2) ...
107s Setting up libgcc-s1:armhf (14.1.0-5ubuntu1) ...
107s (Reading database ... 
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107s Preparing to unpack .../liblz4-1_1.9.4-3_armhf.deb ...
107s Unpacking liblz4-1:armhf (1.9.4-3) over (1.9.4-2) ...
107s Setting up liblz4-1:armhf (1.9.4-3) ...
107s (Reading database ... 
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107s Preparing to unpack .../libp11-kit0_0.25.5-2ubuntu1_armhf.deb ...
107s Unpacking libp11-kit0:armhf (0.25.5-2ubuntu1) over (0.25.3-4ubuntu2) ...
108s Setting up libp11-kit0:armhf (0.25.5-2ubuntu1) ...
108s (Reading database ... 
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(Reading database ... 58436 files and directories currently installed.)
108s Preparing to unpack .../00-mawk_1.3.4.20240622-2_armhf.deb ...
108s Unpacking mawk (1.3.4.20240622-2) over (1.3.4.20240622-1) ...
108s Preparing to unpack .../01-libdevmapper1.02.1_2%3a1.02.196-1ubuntu1_armhf.deb ...
108s Unpacking libdevmapper1.02.1:armhf (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ...
108s Preparing to unpack .../02-dmsetup_2%3a1.02.196-1ubuntu1_armhf.deb ...
108s Unpacking dmsetup (2:1.02.196-1ubuntu1) over (2:1.02.185-3ubuntu4) ...
108s Preparing to unpack .../03-libbpf1_1%3a1.4.5-1_armhf.deb ...
108s Unpacking libbpf1:armhf (1:1.4.5-1) over (1:1.4.3-1) ...
108s Preparing to unpack .../04-libxml2_2.12.7+dfsg-3_armhf.deb ...
108s Unpacking libxml2:armhf (2.12.7+dfsg-3) over (2.9.14+dfsg-1.3ubuntu3) ...
108s Preparing to unpack .../05-logrotate_3.22.0-1_armhf.deb ...
108s Unpacking logrotate (3.22.0-1) over (3.21.0-2build1) ...
108s Preparing to unpack .../06-netcat-openbsd_1.226-1.1_armhf.deb ...
108s Unpacking netcat-openbsd (1.226-1.1) over (1.226-1ubuntu2) ...
108s Preparing to unpack .../07-networkd-dispatcher_2.2.4-1.1_all.deb ...
108s Unpacking networkd-dispatcher (2.2.4-1.1) over (2.2.4-1) ...
108s Preparing to unpack .../08-rsyslog_8.2406.0-1ubuntu1_armhf.deb ...
108s Unpacking rsyslog (8.2406.0-1ubuntu1) over (8.2312.0-3ubuntu9) ...
108s Preparing to unpack .../09-systemd-hwe-hwdb_256.2.1_all.deb ...
108s Unpacking systemd-hwe-hwdb (256.2.1) over (255.1.3) ...
108s Preparing to unpack .../10-ubuntu-pro-client-l10n_33.2_armhf.deb ...
108s Unpacking ubuntu-pro-client-l10n (33.2) over (33.1) ...
108s Preparing to unpack .../11-ubuntu-pro-client_33.2_armhf.deb ...
108s Unpacking ubuntu-pro-client (33.2) over (33.1) ...
108s Preparing to unpack .../12-bind9-dnsutils_1%3a9.18.28-0ubuntu1_armhf.deb ...
108s Unpacking bind9-dnsutils (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ...
108s Preparing to unpack .../13-bind9-host_1%3a9.18.28-0ubuntu1_armhf.deb ...
108s Unpacking bind9-host (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ...
108s Preparing to unpack .../14-bind9-libs_1%3a9.18.28-0ubuntu1_armhf.deb ...
108s Unpacking bind9-libs:armhf (1:9.18.28-0ubuntu1) over (1:9.18.24-0ubuntu5) ...
109s Preparing to unpack .../15-pci.ids_0.0~2024.06.23-1_all.deb ...
109s Unpacking pci.ids (0.0~2024.06.23-1) over (0.0~2024.05.31-1) ...
109s Preparing to unpack .../16-strace_6.8-2_armhf.deb ...
109s Unpacking strace (6.8-2) over (6.8-0ubuntu2) ...
109s Preparing to unpack .../17-libnspr4_2%3a4.35-1.1ubuntu1_armhf.deb ...
109s Unpacking libnspr4:armhf (2:4.35-1.1ubuntu1) over (2:4.35-1.1build1) ...
109s Preparing to unpack .../18-udisks2_2.10.1-9ubuntu1_armhf.deb ...
109s Unpacking udisks2 (2.10.1-9ubuntu1) over (2.10.1-9) ...
109s Preparing to unpack .../19-libudisks2-0_2.10.1-9ubuntu1_armhf.deb ...
109s Unpacking libudisks2-0:armhf (2.10.1-9ubuntu1) over (2.10.1-9) ...
109s Preparing to unpack .../20-python3-launchpadlib_2.0.0-1_all.deb ...
109s Unpacking python3-launchpadlib (2.0.0-1) over (1.11.0-6) ...
109s Preparing to unpack .../21-cloud-init_24.3~1g6e4153b3-0ubuntu1_all.deb ...
109s Unpacking cloud-init (24.3~1g6e4153b3-0ubuntu1) over (24.2-0ubuntu1) ...
109s Preparing to unpack .../22-gdisk_1.0.10-2_armhf.deb ...
109s Unpacking gdisk (1.0.10-2) over (1.0.10-1build1) ...
109s Preparing to unpack .../23-kpartx_0.9.9-1ubuntu2_armhf.deb ...
109s Unpacking kpartx (0.9.9-1ubuntu2) over (0.9.4-5ubuntu8) ...
110s Preparing to unpack .../24-multipath-tools_0.9.9-1ubuntu2_armhf.deb ...
110s Unpacking multipath-tools (0.9.9-1ubuntu2) over (0.9.4-5ubuntu8) ...
110s dpkg: warning: unable to delete old directory '/lib/multipath': Directory not empty
110s Setting up logrotate (3.22.0-1) ...
110s logrotate.service is a disabled or a static unit not running, not starting it.
110s Setting up networkd-dispatcher (2.2.4-1.1) ...
111s Setting up pci.ids (0.0~2024.06.23-1) ...
111s Setting up cloud-init (24.3~1g6e4153b3-0ubuntu1) ...
112s Setting up python3-launchpadlib (2.0.0-1) ...
112s Setting up rsyslog (8.2406.0-1ubuntu1) ...
113s info: The user `syslog' is already a member of `adm'.
113s apparmor_parser: Unable to replace "rsyslogd".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
113s 
114s Setting up netcat-openbsd (1.226-1.1) ...
114s Setting up gdisk (1.0.10-2) ...
114s Setting up libnspr4:armhf (2:4.35-1.1ubuntu1) ...
114s Setting up strace (6.8-2) ...
114s Setting up systemd-hwe-hwdb (256.2.1) ...
114s Setting up libdevmapper1.02.1:armhf (2:1.02.196-1ubuntu1) ...
114s Setting up dmsetup (2:1.02.196-1ubuntu1) ...
114s Setting up kpartx (0.9.9-1ubuntu2) ...
114s Setting up mawk (1.3.4.20240622-2) ...
114s Setting up libxml2:armhf (2.12.7+dfsg-3) ...
114s Setting up ubuntu-pro-client (33.2) ...
114s Installing new version of config file /etc/apparmor.d/ubuntu_pro_apt_news ...
114s apparmor_parser: Unable to replace "ubuntu_pro_apt_news".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
114s 
114s apparmor_parser: Unable to replace "apt_methods".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
114s 
114s apparmor_parser: Unable to replace "ubuntu_pro_esm_cache".  apparmor_parser: Access denied. You need policy admin privileges to manage profiles.
114s 
116s Setting up libbpf1:armhf (1:1.4.5-1) ...
116s Setting up libudisks2-0:armhf (2.10.1-9ubuntu1) ...
116s Setting up ubuntu-pro-client-l10n (33.2) ...
116s Setting up udisks2 (2.10.1-9ubuntu1) ...
116s vda: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/uevent': Permission denied
116s vda1: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda1/uevent': Permission denied
116s vda15: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda15/uevent': Permission denied
116s vda2: Failed to write 'change' to '/sys/devices/pci0000:00/0000:00:01.3/0000:04:00.0/virtio2/block/vda/vda2/uevent': Permission denied
116s loop0: Failed to write 'change' to '/sys/devices/virtual/block/loop0/uevent': Permission denied
116s loop1: Failed to write 'change' to '/sys/devices/virtual/block/loop1/uevent': Permission denied
116s loop2: Failed to write 'change' to '/sys/devices/virtual/block/loop2/uevent': Permission denied
116s loop3: Failed to write 'change' to '/sys/devices/virtual/block/loop3/uevent': Permission denied
116s loop4: Failed to write 'change' to '/sys/devices/virtual/block/loop4/uevent': Permission denied
116s loop5: Failed to write 'change' to '/sys/devices/virtual/block/loop5/uevent': Permission denied
116s loop6: Failed to write 'change' to '/sys/devices/virtual/block/loop6/uevent': Permission denied
116s loop7: Failed to write 'change' to '/sys/devices/virtual/block/loop7/uevent': Permission denied
116s Setting up bind9-libs:armhf (1:9.18.28-0ubuntu1) ...
116s Setting up multipath-tools (0.9.9-1ubuntu2) ...
117s Setting up bind9-host (1:9.18.28-0ubuntu1) ...
117s Setting up bind9-dnsutils (1:9.18.28-0ubuntu1) ...
117s Processing triggers for libc-bin (2.39-0ubuntu9) ...
117s Processing triggers for man-db (2.12.1-2) ...
118s Processing triggers for dbus (1.14.10-4ubuntu4) ...
118s Processing triggers for udev (256-1ubuntu1) ...
119s Processing triggers for initramfs-tools (0.142ubuntu30) ...
119s Reading package lists...
119s Building dependency tree...
119s Reading state information...
120s The following packages will be REMOVED:
120s   python3-six*
120s 0 upgraded, 0 newly installed, 1 to remove and 0 not upgraded.
120s After this operation, 59.4 kB disk space will be freed.
120s (Reading database ... 
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(Reading database ... 58436 files and directories currently installed.)
120s Removing python3-six (1.16.0-6) ...
122s autopkgtest [20:16:08]: rebooting testbed after setup commands that affected boot
191s autopkgtest [20:17:17]: testbed running kernel: Linux 6.5.0-44-generic #44~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue Jun 18 16:55:18 UTC 2
217s autopkgtest [20:17:43]: @@@@@@@@@@@@@@@@@@@@ apt-source prime-phylo
228s Get:1 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (dsc) [2175 B]
228s Get:2 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (tar) [751 kB]
228s Get:3 http://ftpmaster.internal/ubuntu oracular/universe prime-phylo 1.0.11-11 (diff) [9072 B]
228s gpgv: Signature made Fri Apr 12 11:16:52 2024 UTC
228s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
228s gpgv: Can't check signature: No public key
228s dpkg-source: warning: cannot verify inline signature for ./prime-phylo_1.0.11-11.dsc: no acceptable signature found
229s autopkgtest [20:17:55]: testing package prime-phylo version 1.0.11-11
230s autopkgtest [20:17:56]: build not needed
233s autopkgtest [20:17:59]: test run-unit-test: preparing testbed
243s Reading package lists...
244s Building dependency tree...
244s Reading state information...
244s Starting pkgProblemResolver with broken count: 0
244s Starting 2 pkgProblemResolver with broken count: 0
244s Done
245s The following additional packages will be installed:
245s   libblas3 libboost-mpi1.83.0 libboost-serialization1.83.0
245s   libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhwloc-plugins
245s   libhwloc15 liblapack3 libmpich12 libmunge2 libopenmpi3t64 libpciaccess0
245s   libpmix2t64 librdmacm1t64 libxnvctrl0 ocl-icd-libopencl1 prime-phylo
245s Suggested packages:
245s   opencl-icd njplot treeviewx muscle probalign mafft python3-biopython mrbayes
245s   phyml raxml
245s The following NEW packages will be installed:
245s   autopkgtest-satdep libblas3 libboost-mpi1.83.0 libboost-serialization1.83.0
245s   libevent-pthreads-2.1-7t64 libfabric1 libgfortran5 libhwloc-plugins
245s   libhwloc15 liblapack3 libmpich12 libmunge2 libopenmpi3t64 libpciaccess0
245s   libpmix2t64 librdmacm1t64 libxnvctrl0 ocl-icd-libopencl1 prime-phylo
245s 0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
245s Need to get 8987 kB/8988 kB of archives.
245s After this operation, 24.5 MB of additional disk space will be used.
245s Get:1 /tmp/autopkgtest.XThWYi/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B]
245s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB]
246s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf libboost-serialization1.83.0 armhf 1.83.0-3ubuntu2 [331 kB]
246s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-5ubuntu1 [311 kB]
246s Get:5 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc15 armhf 2.10.0-1build1 [146 kB]
246s Get:6 http://ftpmaster.internal/ubuntu oracular/universe armhf libmpich12 armhf 4.2.0-5.1 [1679 kB]
246s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf libboost-mpi1.83.0 armhf 1.83.0-3ubuntu2 [267 kB]
246s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-10 [7530 B]
246s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf librdmacm1t64 armhf 52.0-2 [63.2 kB]
246s Get:10 http://ftpmaster.internal/ubuntu oracular/universe armhf libfabric1 armhf 1.17.0-3build2 [419 kB]
246s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB]
246s Get:12 http://ftpmaster.internal/ubuntu oracular/universe armhf libmunge2 armhf 0.5.15-4build1 [17.1 kB]
246s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf libpciaccess0 armhf 0.17-3build1 [16.3 kB]
246s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libxnvctrl0 armhf 510.47.03-0ubuntu4 [11.6 kB]
246s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf ocl-icd-libopencl1 armhf 2.3.2-1build1 [34.5 kB]
246s Get:16 http://ftpmaster.internal/ubuntu oracular/universe armhf libhwloc-plugins armhf 2.10.0-1build1 [13.7 kB]
246s Get:17 http://ftpmaster.internal/ubuntu oracular/universe armhf libpmix2t64 armhf 5.0.1-4.1build1 [616 kB]
246s Get:18 http://ftpmaster.internal/ubuntu oracular/universe armhf libopenmpi3t64 armhf 4.1.6-7ubuntu2 [2041 kB]
246s Get:19 http://ftpmaster.internal/ubuntu oracular/universe armhf prime-phylo armhf 1.0.11-11 [804 kB]
247s Fetched 8987 kB in 1s (8274 kB/s)
247s Selecting previously unselected package libblas3:armhf.
247s (Reading database ... 
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(Reading database ... 58426 files and directories currently installed.)
247s Preparing to unpack .../00-libblas3_3.12.0-3build1_armhf.deb ...
247s Unpacking libblas3:armhf (3.12.0-3build1) ...
247s Selecting previously unselected package libboost-serialization1.83.0:armhf.
247s Preparing to unpack .../01-libboost-serialization1.83.0_1.83.0-3ubuntu2_armhf.deb ...
247s Unpacking libboost-serialization1.83.0:armhf (1.83.0-3ubuntu2) ...
248s Selecting previously unselected package libgfortran5:armhf.
248s Preparing to unpack .../02-libgfortran5_14.1.0-5ubuntu1_armhf.deb ...
248s Unpacking libgfortran5:armhf (14.1.0-5ubuntu1) ...
248s Selecting previously unselected package libhwloc15:armhf.
248s Preparing to unpack .../03-libhwloc15_2.10.0-1build1_armhf.deb ...
248s Unpacking libhwloc15:armhf (2.10.0-1build1) ...
248s Selecting previously unselected package libmpich12:armhf.
248s Preparing to unpack .../04-libmpich12_4.2.0-5.1_armhf.deb ...
248s Unpacking libmpich12:armhf (4.2.0-5.1) ...
248s Selecting previously unselected package libboost-mpi1.83.0.
248s Preparing to unpack .../05-libboost-mpi1.83.0_1.83.0-3ubuntu2_armhf.deb ...
248s Unpacking libboost-mpi1.83.0 (1.83.0-3ubuntu2) ...
248s Selecting previously unselected package libevent-pthreads-2.1-7t64:armhf.
248s Preparing to unpack .../06-libevent-pthreads-2.1-7t64_2.1.12-stable-10_armhf.deb ...
248s Unpacking libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-10) ...
248s Selecting previously unselected package librdmacm1t64:armhf.
248s Preparing to unpack .../07-librdmacm1t64_52.0-2_armhf.deb ...
248s Unpacking librdmacm1t64:armhf (52.0-2) ...
248s Selecting previously unselected package libfabric1:armhf.
248s Preparing to unpack .../08-libfabric1_1.17.0-3build2_armhf.deb ...
248s Unpacking libfabric1:armhf (1.17.0-3build2) ...
248s Selecting previously unselected package liblapack3:armhf.
248s Preparing to unpack .../09-liblapack3_3.12.0-3build1_armhf.deb ...
248s Unpacking liblapack3:armhf (3.12.0-3build1) ...
248s Selecting previously unselected package libmunge2:armhf.
248s Preparing to unpack .../10-libmunge2_0.5.15-4build1_armhf.deb ...
248s Unpacking libmunge2:armhf (0.5.15-4build1) ...
248s Selecting previously unselected package libpciaccess0:armhf.
248s Preparing to unpack .../11-libpciaccess0_0.17-3build1_armhf.deb ...
248s Unpacking libpciaccess0:armhf (0.17-3build1) ...
248s Selecting previously unselected package libxnvctrl0:armhf.
248s Preparing to unpack .../12-libxnvctrl0_510.47.03-0ubuntu4_armhf.deb ...
248s Unpacking libxnvctrl0:armhf (510.47.03-0ubuntu4) ...
248s Selecting previously unselected package ocl-icd-libopencl1:armhf.
248s Preparing to unpack .../13-ocl-icd-libopencl1_2.3.2-1build1_armhf.deb ...
248s Unpacking ocl-icd-libopencl1:armhf (2.3.2-1build1) ...
248s Selecting previously unselected package libhwloc-plugins:armhf.
248s Preparing to unpack .../14-libhwloc-plugins_2.10.0-1build1_armhf.deb ...
248s Unpacking libhwloc-plugins:armhf (2.10.0-1build1) ...
248s Selecting previously unselected package libpmix2t64:armhf.
248s Preparing to unpack .../15-libpmix2t64_5.0.1-4.1build1_armhf.deb ...
248s Unpacking libpmix2t64:armhf (5.0.1-4.1build1) ...
248s Selecting previously unselected package libopenmpi3t64:armhf.
248s Preparing to unpack .../16-libopenmpi3t64_4.1.6-7ubuntu2_armhf.deb ...
248s Unpacking libopenmpi3t64:armhf (4.1.6-7ubuntu2) ...
248s Selecting previously unselected package prime-phylo.
248s Preparing to unpack .../17-prime-phylo_1.0.11-11_armhf.deb ...
248s Unpacking prime-phylo (1.0.11-11) ...
249s Selecting previously unselected package autopkgtest-satdep.
249s Preparing to unpack .../18-1-autopkgtest-satdep.deb ...
249s Unpacking autopkgtest-satdep (0) ...
249s Setting up libpciaccess0:armhf (0.17-3build1) ...
249s Setting up libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-10) ...
249s Setting up libxnvctrl0:armhf (510.47.03-0ubuntu4) ...
249s Setting up libboost-serialization1.83.0:armhf (1.83.0-3ubuntu2) ...
249s Setting up libblas3:armhf (3.12.0-3build1) ...
249s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
249s Setting up libmunge2:armhf (0.5.15-4build1) ...
249s Setting up libhwloc15:armhf (2.10.0-1build1) ...
249s Setting up libgfortran5:armhf (14.1.0-5ubuntu1) ...
249s Setting up libmpich12:armhf (4.2.0-5.1) ...
249s Setting up ocl-icd-libopencl1:armhf (2.3.2-1build1) ...
249s Setting up librdmacm1t64:armhf (52.0-2) ...
249s Setting up libboost-mpi1.83.0 (1.83.0-3ubuntu2) ...
249s Setting up libfabric1:armhf (1.17.0-3build2) ...
249s Setting up liblapack3:armhf (3.12.0-3build1) ...
249s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
249s Setting up libhwloc-plugins:armhf (2.10.0-1build1) ...
249s Setting up libpmix2t64:armhf (5.0.1-4.1build1) ...
249s Setting up libopenmpi3t64:armhf (4.1.6-7ubuntu2) ...
249s Setting up prime-phylo (1.0.11-11) ...
249s Setting up autopkgtest-satdep (0) ...
249s Processing triggers for man-db (2.12.1-2) ...
249s Processing triggers for libc-bin (2.39-0ubuntu9) ...
261s (Reading database ... 58760 files and directories currently installed.)
261s Removing autopkgtest-satdep (0) ...
267s autopkgtest [20:18:33]: test run-unit-test: [-----------------------
269s treesize: symbol lookup error: /usr/lib/prime-phylo/libprime-phylo.so: undefined symbol: _ZNK5boost3mpi12communicatorcvP19ompi_communicator_tEv
270s Error: Command not found
270s autopkgtest [20:18:36]: test run-unit-test: -----------------------]
274s autopkgtest [20:18:40]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
274s run-unit-test        FAIL non-zero exit status 1
277s autopkgtest [20:18:43]: @@@@@@@@@@@@@@@@@@@@ summary
277s run-unit-test        FAIL non-zero exit status 1