0s autopkgtest [01:22:43]: starting date and time: 2024-07-13 01:22:43+0000 0s autopkgtest [01:22:43]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [01:22:43]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.iv64r3wi/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade paml --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- lxd -r lxd-armhf-10.145.243.194 lxd-armhf-10.145.243.194:autopkgtest/ubuntu/oracular/armhf 65s autopkgtest [01:23:48]: testbed dpkg architecture: armhf 67s autopkgtest [01:23:50]: testbed apt version: 2.9.6 67s autopkgtest [01:23:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 76s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 77s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 78s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [48.2 kB] 78s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3860 B] 78s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [366 kB] 78s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [76.5 kB] 78s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1428 B] 78s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 78s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 78s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [344 kB] 78s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6916 B] 78s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1448 B] 78s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 80s Fetched 984 kB in 3s (318 kB/s) 80s Reading package lists... 98s tee: /proc/self/fd/2: Permission denied 122s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 123s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 123s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 123s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 124s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s Calculating upgrade... 125s The following packages will be upgraded: 125s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 125s openssh-server openssh-sftp-server openssl telnet 125s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Need to get 11.9 MB of archives. 125s After this operation, 285 kB of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 126s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 126s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 126s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 126s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 126s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 126s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 126s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 126s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 126s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 127s Preconfiguring packages ... 127s Fetched 11.9 MB in 1s (11.6 MB/s) 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 127s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 127s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 127s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 127s Error: Could not restart systemd, systemd binary not working 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 127s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 127s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 128s Setting up libc-bin (2.39-3.1ubuntu3) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 128s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 128s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 128s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 128s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 128s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 128s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 128s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 128s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 128s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 128s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 128s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 129s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 129s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 129s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 129s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 129s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 129s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 129s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 129s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 129s Setting up locales (2.39-3.1ubuntu3) ... 130s Generating locales (this might take a while)... 131s en_US.UTF-8... done 131s Generation complete. 131s Setting up openssl (3.2.2-1ubuntu1) ... 131s Installing new version of config file /etc/ssl/openssl.cnf ... 131s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 131s Setting up telnet (0.17+2.5-5ubuntu1) ... 131s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 131s Installing new version of config file /etc/pam.d/sshd ... 133s Processing triggers for ufw (0.36.2-6) ... 133s Processing triggers for systemd (256-1ubuntu1) ... 134s Processing triggers for man-db (2.12.1-2) ... 135s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s autopkgtest [01:25:01]: rebooting testbed after setup commands that affected boot 207s autopkgtest [01:26:10]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 235s autopkgtest [01:26:38]: @@@@@@@@@@@@@@@@@@@@ apt-source paml 249s Get:1 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (dsc) [2204 B] 249s Get:2 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (tar) [1375 kB] 249s Get:3 http://ftpmaster.internal/ubuntu oracular/universe paml 4.9j+dfsg-4 (diff) [7128 B] 249s gpgv: Signature made Sat Dec 24 15:02:32 2022 UTC 249s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 249s gpgv: issuer "emollier@debian.org" 249s gpgv: Can't check signature: No public key 249s dpkg-source: warning: cannot verify inline signature for ./paml_4.9j+dfsg-4.dsc: no acceptable signature found 249s autopkgtest [01:26:52]: testing package paml version 4.9j+dfsg-4 251s autopkgtest [01:26:54]: build not needed 254s autopkgtest [01:26:57]: test run-unit-test: preparing testbed 264s Reading package lists... 264s Building dependency tree... 264s Reading state information... 264s Starting pkgProblemResolver with broken count: 0 264s Starting 2 pkgProblemResolver with broken count: 0 264s Done 265s The following additional packages will be installed: 265s paml paml-doc 265s The following NEW packages will be installed: 265s autopkgtest-satdep paml paml-doc 265s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 265s Need to get 1649 kB/1650 kB of archives. 265s After this operation, 8821 kB of additional disk space will be used. 265s Get:1 /tmp/autopkgtest.eSgEBH/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [712 B] 265s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf paml armhf 4.9j+dfsg-4 [646 kB] 265s Get:3 http://ftpmaster.internal/ubuntu oracular/universe armhf paml-doc all 4.9j+dfsg-4 [1003 kB] 266s Fetched 1649 kB in 1s (2575 kB/s) 266s Selecting previously unselected package paml. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 266s Preparing to unpack .../paml_4.9j+dfsg-4_armhf.deb ... 266s Unpacking paml (4.9j+dfsg-4) ... 266s Selecting previously unselected package paml-doc. 266s Preparing to unpack .../paml-doc_4.9j+dfsg-4_all.deb ... 266s Unpacking paml-doc (4.9j+dfsg-4) ... 266s Selecting previously unselected package autopkgtest-satdep. 266s Preparing to unpack .../1-autopkgtest-satdep.deb ... 266s Unpacking autopkgtest-satdep (0) ... 266s Setting up paml-doc (4.9j+dfsg-4) ... 266s Setting up paml (4.9j+dfsg-4) ... 266s Setting up autopkgtest-satdep (0) ... 279s (Reading database ... 58651 files and directories currently installed.) 279s Removing autopkgtest-satdep (0) ... 285s autopkgtest [01:27:28]: test run-unit-test: [----------------------- 287s Test 4 290s 290s CODONML in paml version 4.9j, October 2019 290s 290s ---------------------------------------------- 290s Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT 290s TTC | TCC | TAC | TGC 290s Leu L TTA | TCA | *** * TAA | *** * TGA 290s TTG | TCG | TAG | Trp W TGG 290s ---------------------------------------------- 290s Leu L CTT | Pro P CCT | His H CAT | Arg R CGT 290s CTC | CCC | CAC | CGC 290s CTA | CCA | Gln Q CAA | CGA 290s CTG | CCG | CAG | CGG 290s ---------------------------------------------- 290s Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT 290s ATC | ACC | AAC | AGC 290s ATA | ACA | Lys K AAA | Arg R AGA 290s Met M ATG | ACG | AAG | AGG 290s ---------------------------------------------- 290s Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT 290s GTC | GCC | GAC | GGC 290s GTA | GCA | Glu E GAA | GGA 290s GTG | GCG | GAG | GGG 290s ---------------------------------------------- 290s Nice code, uuh? 290s ns = 7 ls = 390 290s Reading sequences, sequential format.. 290s Reading seq # 1: Hsa_Human Reading seq # 2: Hla_gibbon Reading seq # 3: Cgu/Can_colobus Reading seq # 4: Pne_langur Reading seq # 5: Mmu_rhesus Reading seq # 6: Ssc_squirrelM Reading seq # 7: Cja_marmoset 290s Sequences read.. 290s Counting site patterns.. 0:00 290s Compressing, 81 patterns at 130 / 130 sites (100.0%), 0:00 290s Collecting fpatt[] & pose[], 81 patterns at 130 / 130 sites (100.0%), 0:00 290s Counting codons.. 290s 290s 168 bytes for distance 290s 79056 bytes for conP 290s 4095605972 bytes for fhK 290s 5000000 bytes for space 290s 290s 2 branch types are in tree. Stop if wrong. 290s TREE # 1 290s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 290s 197640 bytes for conP, adjusted 290s 290s 0.065325 0.069461 0.107328 0.052058 0.043951 0.098976 0.063911 0.016083 0.074250 0.085612 0.045507 0.944297 0.829534 1.099334 290s 290s ntime & nrate & np: 11 3 14 290s 290s Bounds (np=14): 290s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 290s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 290s 290s np = 14 290s lnL0 = -938.223620 290s 290s Iterating by ming2 290s Initial: fx= 938.223620 290s x= 0.06533 0.06946 0.10733 0.05206 0.04395 0.09898 0.06391 0.01608 0.07425 0.08561 0.04551 0.94430 0.82953 1.09933 290s 290s 1 h-m-p 0.0000 0.0008 193.6508 +++YYCCCC 926.313667 5 0.0006 30 | 0/14 290s 2 h-m-p 0.0001 0.0007 150.7282 CCCC 924.690957 3 0.0002 53 | 0/14 290s 3 h-m-p 0.0002 0.0009 83.7066 CCCC 924.102799 3 0.0002 76 | 0/14 290s 4 h-m-p 0.0005 0.0034 40.5597 YCCCC 923.468638 4 0.0010 100 | 0/14 290s 5 h-m-p 0.0003 0.0037 146.7443 +CCCCC 920.875877 4 0.0014 126 | 0/14 290s 6 h-m-p 0.0005 0.0025 328.3381 +YCCCC 915.427441 4 0.0014 151 | 0/14 290s 7 h-m-p 0.0008 0.0040 245.5071 CCCC 911.645349 3 0.0013 174 | 0/14 290s 8 h-m-p 0.0005 0.0024 188.7782 CCCCC 910.097356 4 0.0007 199 | 0/14 290s 9 h-m-p 0.0011 0.0057 20.6654 YCC 910.023593 2 0.0005 219 | 0/14 290s 10 h-m-p 0.0012 0.0275 8.6106 +YCC 909.919865 2 0.0035 240 | 0/14 290s 11 h-m-p 0.0005 0.0393 61.7510 +CC 909.562159 1 0.0020 260 | 0/14 290s 12 h-m-p 0.0024 0.0121 19.8092 CYC 909.527772 2 0.0007 280 | 0/14 290s 13 h-m-p 0.0076 0.0823 1.6884 YC 909.519939 1 0.0032 298 | 0/14 290s 14 h-m-p 0.0016 0.7874 14.0303 ++++YCCC 905.636933 3 0.2543 324 | 0/14 290s 15 h-m-p 1.2738 6.3691 0.9327 CC 904.309905 1 1.2720 343 | 0/14 290s 16 h-m-p 1.6000 8.0000 0.7035 CYC 903.785811 2 1.6213 377 | 0/14 290s 17 h-m-p 1.6000 8.0000 0.6990 CCC 903.468678 2 1.9004 412 | 0/14 290s 18 h-m-p 1.6000 8.0000 0.4904 CCC 903.389834 2 1.4941 447 | 0/14 290s 19 h-m-p 1.6000 8.0000 0.2517 C 903.379533 0 1.5801 478 | 0/14 290s 20 h-m-p 1.6000 8.0000 0.0838 +YC 903.374031 1 4.9695 511 | 0/14 294s 21 h-m-p 1.6000 8.0000 0.2144 ++ 903.328322 m 8.0000 542 | 0/14 294s 22 h-m-p 0.4683 8.0000 3.6630 +CCCC 903.228616 3 2.7004 580 | 0/14 294s 23 h-m-p 1.6000 8.0000 2.7858 CYC 903.182496 2 1.9573 600 | 0/14 294s 24 h-m-p 1.5949 8.0000 3.4189 +YC 903.148322 1 4.4237 619 | 0/14 294s 25 h-m-p 1.6000 8.0000 4.7747 YCC 903.127812 2 2.8706 639 | 0/14 294s 26 h-m-p 1.6000 8.0000 8.3491 YCC 903.111980 2 2.8223 659 | 0/14 294s 27 h-m-p 1.6000 8.0000 12.1377 YCC 903.101098 2 2.5761 679 | 0/14 294s 28 h-m-p 1.6000 8.0000 17.1715 YCC 903.092283 2 3.0432 699 | 0/14 294s 29 h-m-p 1.6000 8.0000 23.9241 YC 903.086234 1 3.3061 717 | 0/14 294s 30 h-m-p 1.6000 8.0000 35.1104 YC 903.082302 1 3.1269 735 | 0/14 294s 31 h-m-p 1.6000 8.0000 51.1868 YC 903.079484 1 3.4317 753 | 0/14 294s 32 h-m-p 1.2242 6.1212 77.1032 +YC 903.077669 1 3.0823 772 | 0/14 294s 33 h-m-p 0.4174 2.0872 112.2584 ++ 903.076557 m 2.0872 789 | 1/14 294s 34 h-m-p 1.6000 8.0000 0.0014 Y 903.076552 0 1.0219 806 | 1/14 294s 35 h-m-p 1.6000 8.0000 0.0001 C 903.076551 0 1.4029 836 | 1/14 294s 36 h-m-p 1.6000 8.0000 0.0000 C 903.076551 0 1.4263 866 294s Out.. 294s lnL = -903.076551 294s 867 lfun, 1734 eigenQcodon, 9537 P(t) 294s 294s 2 branch types are in tree. Stop if wrong. 294s TREE # 2 294s ((1, 2), ((3, 4), 5), (6, 7)); MP score: 65 294s 0.079041 0.028021 0.085359 0.056941 0.054342 0.051879 0.080252 0.057104 0.010581 0.018550 0.041545 1.008064 1.180176 1.153265 294s 294s ntime & nrate & np: 11 3 14 294s 294s Bounds (np=14): 294s 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000004 0.000100 0.000100 0.000100 294s 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 50.000000 999.000000 999.000000 999.000000 294s 294s np = 14 294s lnL0 = -952.606487 294s 294s Iterating by ming2 294s Initial: fx= 952.606487 294s x= 0.07904 0.02802 0.08536 0.05694 0.05434 0.05188 0.08025 0.05710 0.01058 0.01855 0.04154 1.00806 1.18018 1.15326 294s 294s 1 h-m-p 0.0000 0.0007 1078.2320 ++CYCCC 929.865077 4 0.0001 28 | 0/14 294s 2 h-m-p 0.0002 0.0008 115.2313 +YCYCCC 926.215659 5 0.0005 54 | 0/14 294s 3 h-m-p 0.0002 0.0012 66.0336 CCCC 925.726502 3 0.0003 77 | 0/14 294s 4 h-m-p 0.0005 0.0046 41.4596 YC 925.230775 1 0.0009 95 | 0/14 294s 5 h-m-p 0.0003 0.0075 116.4600 ++YCCC 920.342647 3 0.0035 119 | 0/14 294s 6 h-m-p 0.0005 0.0034 813.6381 YCCCC 912.876371 4 0.0010 143 | 0/14 294s 7 h-m-p 0.0003 0.0017 360.5241 YCYCCC 908.887579 5 0.0008 168 | 0/14 294s 8 h-m-p 0.0002 0.0012 353.1311 CYCCC 906.747242 4 0.0005 192 | 0/14 294s 9 h-m-p 0.0014 0.0072 21.3311 CC 906.668714 1 0.0005 211 | 0/14 294s 10 h-m-p 0.0012 0.0099 9.9257 CC 906.652269 1 0.0004 230 | 0/14 294s 11 h-m-p 0.0008 0.0206 5.4475 CCC 906.637199 2 0.0013 251 | 0/14 294s 12 h-m-p 0.0006 0.0562 12.2645 ++YC 906.501915 1 0.0058 271 | 0/14 294s 13 h-m-p 0.0007 0.0058 107.8238 YCC 906.409147 2 0.0005 291 | 0/14 294s 14 h-m-p 0.0152 4.3654 3.2617 +++CYCC 903.713815 3 1.0696 316 | 0/14 294s 15 h-m-p 1.3371 6.6857 0.5567 CCCCC 902.636360 4 1.5522 341 | 0/14 294s 16 h-m-p 1.6000 8.0000 0.4801 YCCC 902.143698 3 1.2273 377 | 0/14 294s 17 h-m-p 1.3260 8.0000 0.4444 YCC 901.809718 2 2.0944 411 | 0/14 294s 18 h-m-p 1.6000 8.0000 0.5323 YCC 901.673782 2 1.1777 445 | 0/14 294s 19 h-m-p 1.6000 8.0000 0.2926 YC 901.637942 1 1.1528 477 | 0/14 294s 20 h-m-p 1.6000 8.0000 0.0640 YC 901.635256 1 1.1600 509 | 0/14 294s 21 h-m-p 1.6000 8.0000 0.0116 YC 901.634235 1 2.7091 541 | 0/14 294s 22 h-m-p 1.6000 8.0000 0.0182 YC 901.632688 1 3.3029 573 | 0/14 294s 23 h-m-p 1.6000 8.0000 0.0277 C 901.632455 0 1.3467 604 | 0/14 294s 24 h-m-p 1.6000 8.0000 0.0107 +C 901.632214 0 6.6525 636 | 0/14 294s 25 h-m-p 1.4034 8.0000 0.0506 ++ 901.631061 m 8.0000 667 | 0/14 294s 26 h-m-p 1.6000 8.0000 0.0097 YC 901.630897 1 1.2207 699 | 0/14 295s 27 h-m-p 0.7835 8.0000 0.0150 C 901.630891 0 1.0354 730 | 0/14 295s 28 h-m-p 1.6000 8.0000 0.0007 Y 901.630891 0 1.0441 761 | 0/14 295s 29 h-m-p 1.6000 8.0000 0.0003 Y 901.630891 0 1.0493 792 | 0/14 295s 30 h-m-p 1.6000 8.0000 0.0000 C 901.630891 0 0.4000 823 | 0/14 295s 31 h-m-p 0.6466 8.0000 0.0000 -------Y 901.630891 0 0.0000 861 295s Out.. 295s lnL = -901.630891 295s 862 lfun, 1724 eigenQcodon, 9482 P(t) 295s 295s Tree comparisons (Kishino & Hasegawa 1989; Shimodaira & Hasegawa 1999) 295s Reading lnf for tree # 1 Reading lnf for tree # 2, done. 295s Calculating SEs by sitewise comparison, 0:08 295s RELL Bootstrapping.. replicate: 100 / 10000 0:08 RELL Bootstrapping.. replicate: 200 / 10000 0:08 RELL Bootstrapping.. replicate: 300 / 10000 0:08 RELL Bootstrapping.. replicate: 400 / 10000 0:08 RELL Bootstrapping.. replicate: 500 / 10000 0:08 RELL Bootstrapping.. replicate: 600 / 10000 0:08 RELL Bootstrapping.. replicate: 700 / 10000 0:08 RELL Bootstrapping.. replicate: 800 / 10000 0:08 RELL Bootstrapping.. replicate: 900 / 10000 0:08 RELL Bootstrapping.. replicate: 1000 / 10000 0:08 RELL Bootstrapping.. replicate: 1100 / 10000 0:08 RELL Bootstrapping.. replicate: 1200 / 10000 0:08 RELL Bootstrapping.. replicate: 1300 / 10000 0:08 RELL Bootstrapping.. replicate: 1400 / 10000 0:08 RELL Bootstrapping.. replicate: 1500 / 10000 0:08 RELL Bootstrapping.. replicate: 1600 / 10000 0:08 RELL Bootstrapping.. replicate: 1700 / 10000 0:08 RELL Bootstrapping.. replicate: 1800 / 10000 0:08 RELL Bootstrapping.. replicate: 1900 / 10000 0:08 RELL Bootstrapping.. replicate: 2000 / 10000 0:08 RELL Bootstrapping.. replicate: 2100 / 10000 0:08 RELL Bootstrapping.. replicate: 2200 / 10000 0:08 RELL Bootstrapping.. replicate: 2300 / 10000 0:08 RELL Bootstrapping.. replicate: 2400 / 10000 0:08 RELL Bootstrapping.. replicate: 2500 / 10000 0:08 RELL Bootstrapping.. replicate: 2600 / 10000 0:08 RELL Bootstrapping.. replicate: 2700 / 10000 0:08 RELL Bootstrapping.. replicate: 2800 / 10000 0:08 RELL Bootstrapping.. replicate: 2900 / 10000 0:08 RELL Bootstrapping.. replicate: 3000 / 10000 0:08 RELL Bootstrapping.. replicate: 3100 / 10000 0:08 RELL Bootstrapping.. replicate: 3200 / 10000 0:08 RELL Bootstrapping.. replicate: 3300 / 10000 0:08 RELL Bootstrapping.. replicate: 3400 / 10000 0:08 RELL Bootstrapping.. replicate: 3500 / 10000 0:08 RELL Bootstrapping.. replicate: 3600 / 10000 0:08 RELL Bootstrapping.. replicate: 3700 / 10000 0:08 RELL Bootstrapping.. replicate: 3800 / 10000 0:08 RELL Bootstrapping.. replicate: 3900 / 10000 0:08 RELL Bootstrapping.. replicate: 4000 / 10000 0:08 RELL Bootstrapping.. replicate: 4100 / 10000 0:08 RELL Bootstrapping.. replicate: 4200 / 10000 0:08 RELL Bootstrapping.. replicate: 4300 / 10000 0:08 RELL Bootstrapping.. replicate: 4400 / 10000 0:08 RELL Bootstrapping.. replicate: 4500 / 10000 0:08 RELL Bootstrapping.. replicate: 4600 / 10000 0:08 RELL Bootstrapping.. replicate: 4700 / 10000 0:08 RELL Bootstrapping.. replicate: 4800 / 10000 0:08 RELL Bootstrapping.. replicate: 4900 / 10000 0:08 RELL Bootstrapping.. replicate: 5000 / 10000 0:08 RELL Bootstrapping.. replicate: 5100 / 10000 0:08 RELL Bootstrapping.. replicate: 5200 / 10000 0:08 RELL Bootstrapping.. replicate: 5300 / 10000 0:08 RELL Bootstrapping.. replicate: 5400 / 10000 0:08 RELL Bootstrapping.. replicate: 5500 / 10000 0:08 RELL Bootstrapping.. replicate: 5600 / 10000 0:08 RELL Bootstrapping.. replicate: 5700 / 10000 0:08 RELL Bootstrapping.. replicate: 5800 / 10000 0:08 RELL Bootstrapping.. replicate: 5900 / 10000 0:08 RELL Bootstrapping.. replicate: 6000 / 10000 0:08 RELL Bootstrapping.. replicate: 6100 / 10000 0:08 RELL Bootstrapping.. replicate: 6200 / 10000 0:08 RELL Bootstrapping.. replicate: 6300 / 10000 0:08 RELL Bootstrapping.. replicate: 6400 / 10000 0:08 RELL Bootstrapping.. replicate: 6500 / 10000 0:08 RELL Bootstrapping.. replicate: 6600 / 10000 0:08 RELL Bootstrapping.. replicate: 6700 / 10000 0:08 RELL Bootstrapping.. replicate: 6800 / 10000 0:08 RELL Bootstrapping.. replicate: 6900 / 10000 0:08 RELL Bootstrapping.. replicate: 7000 / 10000 0:08 RELL Bootstrapping.. replicate: 7100 / 10000 0:08 RELL Bootstrapping.. replicate: 7200 / 10000 0:08 RELL Bootstrapping.. replicate: 7300 / 10000 0:08 RELL Bootstrapping.. replicate: 7400 / 10000 0:08 RELL Bootstrapping.. replicate: 7500 / 10000 0:08 RELL Bootstrapping.. replicate: 7600 / 10000 0:08 RELL Bootstrapping.. replicate: 7700 / 10000 0:08 RELL Bootstrapping.. replicate: 7800 / 10000 0:08 RELL Bootstrapping.. replicate: 7900 / 10000 0:08 RELL Bootstrapping.. replicate: 8000 / 10000 0:08 RELL Bootstrapping.. replicate: 8100 / 10000 0:08 RELL Bootstrapping.. replicate: 8200 / 10000 0:08 RELL Bootstrapping.. replicate: 8300 / 10000 0:08 RELL Bootstrapping.. replicate: 8400 / 10000 0:08 RELL Bootstrapping.. replicate: 8500 / 10000 0:08 RELL Bootstrapping.. replicate: 8600 / 10000 0:08 RELL Bootstrapping.. replicate: 8700 / 10000 0:08 RELL Bootstrapping.. replicate: 8800 / 10000 0:08 RELL Bootstrapping.. replicate: 8900 / 10000 0:08 RELL Bootstrapping.. replicate: 9000 / 10000 0:08 RELL Bootstrapping.. replicate: 9100 / 10000 0:08 RELL Bootstrapping.. replicate: 9200 / 10000 0:08 RELL Bootstrapping.. replicate: 9300 / 10000 0:08 RELL Bootstrapping.. replicate: 9400 / 10000 0:08 RELL Bootstrapping.. replicate: 9500 / 10000 0:08 RELL Bootstrapping.. replicate: 9600 / 10000 0:08 RELL Bootstrapping.. replicate: 9700 / 10000 0:08 RELL Bootstrapping.. replicate: 9800 / 10000 0:08 RELL Bootstrapping.. replicate: 9900 / 10000 0:08 RELL Bootstrapping.. replicate: 10000 / 10000 0:08 295s now doing S-H test 295s 295s Time used: 0:08 295s Passed 295s 295s autopkgtest [01:27:38]: test run-unit-test: -----------------------] 299s autopkgtest [01:27:42]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 299s run-unit-test PASS 303s autopkgtest [01:27:46]: @@@@@@@@@@@@@@@@@@@@ summary 303s run-unit-test PASS