0s autopkgtest [22:50:26]: starting date and time: 2024-07-12 22:50:26+0000 0s autopkgtest [22:50:26]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [22:50:26]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._kt0vv8v/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade libssw --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- lxd -r lxd-armhf-10.145.243.242 lxd-armhf-10.145.243.242:autopkgtest/ubuntu/oracular/armhf 52s autopkgtest [22:51:18]: testbed dpkg architecture: armhf 54s autopkgtest [22:51:20]: testbed apt version: 2.9.6 54s autopkgtest [22:51:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 68s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 68s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 68s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.5 kB] 68s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 68s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [57.9 kB] 68s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1440 B] 68s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 68s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 68s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [309 kB] 68s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6960 B] 68s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1796 B] 68s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 70s Fetched 922 kB in 1s (1237 kB/s) 70s Reading package lists... 87s tee: /proc/self/fd/2: Permission denied 110s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 110s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 111s Reading package lists... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s Calculating upgrade... 112s The following packages will be upgraded: 112s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 112s openssh-server openssh-sftp-server openssl telnet 112s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s Need to get 11.9 MB of archives. 112s After this operation, 285 kB of additional disk space will be used. 112s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 113s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 113s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 113s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 113s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 113s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 113s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 113s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 113s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 113s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 113s Preconfiguring packages ... 114s Fetched 11.9 MB in 1s (13.0 MB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 114s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 114s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 114s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 114s Error: Could not restart systemd, systemd binary not working 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 114s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 114s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 114s Setting up libc-bin (2.39-3.1ubuntu3) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 115s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 115s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 115s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 115s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 115s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 115s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 115s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 115s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 115s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 115s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 115s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 115s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 115s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 115s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 115s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 115s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 115s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 115s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 115s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 115s Setting up locales (2.39-3.1ubuntu3) ... 116s Generating locales (this might take a while)... 120s en_US.UTF-8... done 120s Generation complete. 120s Setting up openssl (3.2.2-1ubuntu1) ... 120s Installing new version of config file /etc/ssl/openssl.cnf ... 120s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 120s Setting up telnet (0.17+2.5-5ubuntu1) ... 120s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 120s Installing new version of config file /etc/pam.d/sshd ... 122s Processing triggers for ufw (0.36.2-6) ... 122s Processing triggers for systemd (256-1ubuntu1) ... 122s Processing triggers for man-db (2.12.1-2) ... 124s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s autopkgtest [22:52:33]: rebooting testbed after setup commands that affected boot 194s autopkgtest [22:53:40]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 221s autopkgtest [22:54:07]: @@@@@@@@@@@@@@@@@@@@ apt-source libssw 244s Get:1 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (dsc) [2501 B] 244s Get:2 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (tar) [12.3 MB] 244s Get:3 http://ftpmaster.internal/ubuntu oracular/universe libssw 1.1-14build1 (diff) [54.3 kB] 244s gpgv: Signature made Mon Apr 22 09:48:29 2024 UTC 244s gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 244s gpgv: issuer "juliank@ubuntu.com" 244s gpgv: Can't check signature: No public key 244s dpkg-source: warning: cannot verify inline signature for ./libssw_1.1-14build1.dsc: no acceptable signature found 245s autopkgtest [22:54:31]: testing package libssw version 1.1-14build1 247s autopkgtest [22:54:33]: build not needed 250s autopkgtest [22:54:36]: test build-lib: preparing testbed 261s Reading package lists... 261s Building dependency tree... 261s Reading state information... 261s Starting pkgProblemResolver with broken count: 0 262s Starting 2 pkgProblemResolver with broken count: 0 262s Done 262s The following additional packages will be installed: 262s build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf 262s cpp-arm-linux-gnueabihf g++ g++-13 g++-13-arm-linux-gnueabihf 262s g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf gcc-13-base 262s gcc-arm-linux-gnueabihf libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0 262s libcrypt-dev libgcc-13-dev libgomp1 libisl23 libmpc3 libssw-dev libssw0 262s libstdc++-13-dev libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 262s Suggested packages: 262s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 262s autoconf automake libtool flex bison gdb gcc-doc gdb-arm-linux-gnueabihf 262s libc-devtools glibc-doc libstdc++-13-doc 262s Recommended packages: 262s manpages manpages-dev 262s The following NEW packages will be installed: 262s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-arm-linux-gnueabihf 262s cpp-arm-linux-gnueabihf g++ g++-13 g++-13-arm-linux-gnueabihf 262s g++-arm-linux-gnueabihf gcc gcc-13 gcc-13-arm-linux-gnueabihf gcc-13-base 262s gcc-arm-linux-gnueabihf libasan8 libatomic1 libc-dev-bin libc6-dev libcc1-0 262s libcrypt-dev libgcc-13-dev libgomp1 libisl23 libmpc3 libssw-dev libssw0 262s libstdc++-13-dev libubsan1 linux-libc-dev rpcsvc-proto zlib1g-dev 262s 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. 262s Need to get 48.3 MB/48.3 MB of archives. 262s After this operation, 141 MB of additional disk space will be used. 262s Get:1 /tmp/autopkgtest.C8FAho/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [728 B] 262s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-dev-bin armhf 2.39-3.1ubuntu3 [19.1 kB] 263s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf linux-libc-dev armhf 6.8.0-31.31 [1557 kB] 263s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libcrypt-dev armhf 1:4.4.36-4build1 [120 kB] 263s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf rpcsvc-proto armhf 1.4.2-0ubuntu7 [62.2 kB] 263s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6-dev armhf 2.39-3.1ubuntu3 [1350 kB] 263s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-base armhf 13.2.0-23ubuntu4 [48.9 kB] 263s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf libisl23 armhf 0.26-3build1 [544 kB] 263s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf libmpc3 armhf 1.3.1-1build1 [46.7 kB] 263s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [8759 kB] 263s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-13 armhf 13.2.0-23ubuntu4 [1034 B] 263s Get:12 http://ftpmaster.internal/ubuntu oracular/main armhf cpp-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [5320 B] 263s Get:13 http://ftpmaster.internal/ubuntu oracular/main armhf cpp armhf 4:13.2.0-7ubuntu1 [22.4 kB] 263s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libcc1-0 armhf 14.1.0-1ubuntu1 [43.3 kB] 263s Get:15 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB] 263s Get:16 http://ftpmaster.internal/ubuntu oracular/main armhf libatomic1 armhf 14.1.0-1ubuntu1 [7816 B] 263s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libasan8 armhf 14.1.0-1ubuntu1 [2913 kB] 263s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf libubsan1 armhf 14.1.0-1ubuntu1 [1154 kB] 263s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf libgcc-13-dev armhf 13.2.0-23ubuntu4 [899 kB] 263s Get:20 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [16.9 MB] 264s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-13 armhf 13.2.0-23ubuntu4 [453 kB] 264s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf gcc-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [1220 B] 264s Get:23 http://ftpmaster.internal/ubuntu oracular/main armhf gcc armhf 4:13.2.0-7ubuntu1 [5022 B] 264s Get:24 http://ftpmaster.internal/ubuntu oracular/main armhf libstdc++-13-dev armhf 13.2.0-23ubuntu4 [2456 kB] 264s Get:25 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13-arm-linux-gnueabihf armhf 13.2.0-23ubuntu4 [9941 kB] 264s Get:26 http://ftpmaster.internal/ubuntu oracular/main armhf g++-13 armhf 13.2.0-23ubuntu4 [14.5 kB] 264s Get:27 http://ftpmaster.internal/ubuntu oracular/main armhf g++-arm-linux-gnueabihf armhf 4:13.2.0-7ubuntu1 [966 B] 264s Get:28 http://ftpmaster.internal/ubuntu oracular/main armhf g++ armhf 4:13.2.0-7ubuntu1 [1090 B] 264s Get:29 http://ftpmaster.internal/ubuntu oracular/main armhf build-essential armhf 12.10ubuntu1 [4928 B] 264s Get:30 http://ftpmaster.internal/ubuntu oracular/universe armhf libssw0 armhf 1.1-14build1 [22.7 kB] 264s Get:31 http://ftpmaster.internal/ubuntu oracular/universe armhf libssw-dev armhf 1.1-14build1 [24.3 kB] 264s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1ubuntu2 [880 kB] 265s Fetched 48.3 MB in 2s (25.0 MB/s) 265s Selecting previously unselected package libc-dev-bin. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 265s Preparing to unpack .../00-libc-dev-bin_2.39-3.1ubuntu3_armhf.deb ... 265s Unpacking libc-dev-bin (2.39-3.1ubuntu3) ... 265s Selecting previously unselected package linux-libc-dev:armhf. 265s Preparing to unpack .../01-linux-libc-dev_6.8.0-31.31_armhf.deb ... 265s Unpacking linux-libc-dev:armhf (6.8.0-31.31) ... 265s Selecting previously unselected package libcrypt-dev:armhf. 265s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4build1_armhf.deb ... 265s Unpacking libcrypt-dev:armhf (1:4.4.36-4build1) ... 265s Selecting previously unselected package rpcsvc-proto. 265s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu7_armhf.deb ... 265s Unpacking rpcsvc-proto (1.4.2-0ubuntu7) ... 265s Selecting previously unselected package libc6-dev:armhf. 265s Preparing to unpack .../04-libc6-dev_2.39-3.1ubuntu3_armhf.deb ... 265s Unpacking libc6-dev:armhf (2.39-3.1ubuntu3) ... 265s Selecting previously unselected package gcc-13-base:armhf. 265s Preparing to unpack .../05-gcc-13-base_13.2.0-23ubuntu4_armhf.deb ... 265s Unpacking gcc-13-base:armhf (13.2.0-23ubuntu4) ... 265s Selecting previously unselected package libisl23:armhf. 265s Preparing to unpack .../06-libisl23_0.26-3build1_armhf.deb ... 265s Unpacking libisl23:armhf (0.26-3build1) ... 265s Selecting previously unselected package libmpc3:armhf. 265s Preparing to unpack .../07-libmpc3_1.3.1-1build1_armhf.deb ... 265s Unpacking libmpc3:armhf (1.3.1-1build1) ... 265s Selecting previously unselected package cpp-13-arm-linux-gnueabihf. 265s Preparing to unpack .../08-cpp-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ... 265s Unpacking cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 266s Selecting previously unselected package cpp-13. 266s Preparing to unpack .../09-cpp-13_13.2.0-23ubuntu4_armhf.deb ... 266s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 266s Selecting previously unselected package cpp-arm-linux-gnueabihf. 266s Preparing to unpack .../10-cpp-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 266s Unpacking cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 266s Selecting previously unselected package cpp. 266s Preparing to unpack .../11-cpp_4%3a13.2.0-7ubuntu1_armhf.deb ... 266s Unpacking cpp (4:13.2.0-7ubuntu1) ... 266s Selecting previously unselected package libcc1-0:armhf. 266s Preparing to unpack .../12-libcc1-0_14.1.0-1ubuntu1_armhf.deb ... 266s Unpacking libcc1-0:armhf (14.1.0-1ubuntu1) ... 266s Selecting previously unselected package libgomp1:armhf. 266s Preparing to unpack .../13-libgomp1_14.1.0-1ubuntu1_armhf.deb ... 266s Unpacking libgomp1:armhf (14.1.0-1ubuntu1) ... 266s Selecting previously unselected package libatomic1:armhf. 266s Preparing to unpack .../14-libatomic1_14.1.0-1ubuntu1_armhf.deb ... 266s Unpacking libatomic1:armhf (14.1.0-1ubuntu1) ... 266s Selecting previously unselected package libasan8:armhf. 266s Preparing to unpack .../15-libasan8_14.1.0-1ubuntu1_armhf.deb ... 266s Unpacking libasan8:armhf (14.1.0-1ubuntu1) ... 266s Selecting previously unselected package libubsan1:armhf. 266s Preparing to unpack .../16-libubsan1_14.1.0-1ubuntu1_armhf.deb ... 266s Unpacking libubsan1:armhf (14.1.0-1ubuntu1) ... 266s Selecting previously unselected package libgcc-13-dev:armhf. 266s Preparing to unpack .../17-libgcc-13-dev_13.2.0-23ubuntu4_armhf.deb ... 266s Unpacking libgcc-13-dev:armhf (13.2.0-23ubuntu4) ... 266s Selecting previously unselected package gcc-13-arm-linux-gnueabihf. 266s Preparing to unpack .../18-gcc-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ... 266s Unpacking gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 266s Selecting previously unselected package gcc-13. 267s Preparing to unpack .../19-gcc-13_13.2.0-23ubuntu4_armhf.deb ... 267s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 267s Selecting previously unselected package gcc-arm-linux-gnueabihf. 267s Preparing to unpack .../20-gcc-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 267s Unpacking gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package gcc. 267s Preparing to unpack .../21-gcc_4%3a13.2.0-7ubuntu1_armhf.deb ... 267s Unpacking gcc (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package libstdc++-13-dev:armhf. 267s Preparing to unpack .../22-libstdc++-13-dev_13.2.0-23ubuntu4_armhf.deb ... 267s Unpacking libstdc++-13-dev:armhf (13.2.0-23ubuntu4) ... 267s Selecting previously unselected package g++-13-arm-linux-gnueabihf. 267s Preparing to unpack .../23-g++-13-arm-linux-gnueabihf_13.2.0-23ubuntu4_armhf.deb ... 267s Unpacking g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 267s Selecting previously unselected package g++-13. 267s Preparing to unpack .../24-g++-13_13.2.0-23ubuntu4_armhf.deb ... 267s Unpacking g++-13 (13.2.0-23ubuntu4) ... 267s Selecting previously unselected package g++-arm-linux-gnueabihf. 267s Preparing to unpack .../25-g++-arm-linux-gnueabihf_4%3a13.2.0-7ubuntu1_armhf.deb ... 267s Unpacking g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package g++. 267s Preparing to unpack .../26-g++_4%3a13.2.0-7ubuntu1_armhf.deb ... 267s Unpacking g++ (4:13.2.0-7ubuntu1) ... 267s Selecting previously unselected package build-essential. 267s Preparing to unpack .../27-build-essential_12.10ubuntu1_armhf.deb ... 267s Unpacking build-essential (12.10ubuntu1) ... 267s Selecting previously unselected package libssw0:armhf. 267s Preparing to unpack .../28-libssw0_1.1-14build1_armhf.deb ... 267s Unpacking libssw0:armhf (1.1-14build1) ... 267s Selecting previously unselected package libssw-dev:armhf. 267s Preparing to unpack .../29-libssw-dev_1.1-14build1_armhf.deb ... 267s Unpacking libssw-dev:armhf (1.1-14build1) ... 267s Selecting previously unselected package zlib1g-dev:armhf. 267s Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_armhf.deb ... 267s Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... 267s Selecting previously unselected package autopkgtest-satdep. 267s Preparing to unpack .../31-1-autopkgtest-satdep.deb ... 267s Unpacking autopkgtest-satdep (0) ... 267s Setting up linux-libc-dev:armhf (6.8.0-31.31) ... 267s Setting up libgomp1:armhf (14.1.0-1ubuntu1) ... 267s Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... 267s Setting up gcc-13-base:armhf (13.2.0-23ubuntu4) ... 267s Setting up libmpc3:armhf (1.3.1-1build1) ... 267s Setting up libatomic1:armhf (14.1.0-1ubuntu1) ... 267s Setting up libubsan1:armhf (14.1.0-1ubuntu1) ... 267s Setting up libcrypt-dev:armhf (1:4.4.36-4build1) ... 267s Setting up libasan8:armhf (14.1.0-1ubuntu1) ... 267s Setting up libisl23:armhf (0.26-3build1) ... 267s Setting up libc-dev-bin (2.39-3.1ubuntu3) ... 267s Setting up libssw0:armhf (1.1-14build1) ... 267s Setting up libcc1-0:armhf (14.1.0-1ubuntu1) ... 267s Setting up cpp-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 267s Setting up libssw-dev:armhf (1.1-14build1) ... 267s Setting up libgcc-13-dev:armhf (13.2.0-23ubuntu4) ... 267s Setting up libc6-dev:armhf (2.39-3.1ubuntu3) ... 267s Setting up cpp-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 267s Setting up libstdc++-13-dev:armhf (13.2.0-23ubuntu4) ... 267s Setting up cpp-13 (13.2.0-23ubuntu4) ... 267s Setting up gcc-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 267s Setting up gcc-13 (13.2.0-23ubuntu4) ... 267s Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1ubuntu2) ... 267s Setting up cpp (4:13.2.0-7ubuntu1) ... 267s Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 267s Setting up g++-13-arm-linux-gnueabihf (13.2.0-23ubuntu4) ... 267s Setting up g++-arm-linux-gnueabihf (4:13.2.0-7ubuntu1) ... 267s Setting up g++-13 (13.2.0-23ubuntu4) ... 267s Setting up gcc (4:13.2.0-7ubuntu1) ... 267s Setting up g++ (4:13.2.0-7ubuntu1) ... 267s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 267s Setting up build-essential (12.10ubuntu1) ... 267s Setting up autopkgtest-satdep (0) ... 267s Processing triggers for man-db (2.12.1-2) ... 268s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 282s (Reading database ... 61183 files and directories currently installed.) 282s Removing autopkgtest-satdep (0) ... 288s autopkgtest [22:55:14]: test build-lib: [----------------------- 292s optimal_alignment_score: 21 sub-optimal_alignment_score: 8 target_begin: 9 target_end: 22 query_begin: 1 query_end: 15 292s 292s Target: 9 CTGACCCGG-AAATC 22 292s ||||*||||*||||| 292s Query: 1 CTGAGCCGGTAAATC 15 292s 293s ===== SSW result ===== 293s Best Smith-Waterman score: 21 293s Next-best Smith-Waterman score: 8 293s Reference start: 8 293s Reference end: 21 293s Query start: 0 293s Query end: 14 293s Next-best reference end: 4 293s Number of mismatches: 2 293s Cigar: 4=1X4=1I5= 293s ====================== 293s autopkgtest [22:55:19]: test build-lib: -----------------------] 297s autopkgtest [22:55:23]: test build-lib: - - - - - - - - - - results - - - - - - - - - - 297s build-lib PASS 301s autopkgtest [22:55:27]: test build-lib-java: preparing testbed 359s autopkgtest [22:56:25]: testbed dpkg architecture: armhf 361s autopkgtest [22:56:27]: testbed apt version: 2.9.6 361s autopkgtest [22:56:27]: @@@@@@@@@@@@@@@@@@@@ test bed setup 369s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 369s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 369s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 369s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 369s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.5 kB] 369s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [57.9 kB] 369s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1440 B] 369s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 369s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 369s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [309 kB] 369s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6960 B] 369s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1796 B] 369s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 371s Fetched 922 kB in 1s (1208 kB/s) 371s Reading package lists... 395s tee: /proc/self/fd/2: Permission denied 417s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 417s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 417s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 417s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 418s Reading package lists... 418s Reading package lists... 418s Building dependency tree... 418s Reading state information... 419s Calculating upgrade... 419s The following packages will be upgraded: 419s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 419s openssh-server openssh-sftp-server openssl telnet 419s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 419s Need to get 11.9 MB of archives. 419s After this operation, 285 kB of additional disk space will be used. 419s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 420s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 420s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 420s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 420s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 420s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 420s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 420s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 420s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 420s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 420s Preconfiguring packages ... 420s Fetched 11.9 MB in 1s (12.9 MB/s) 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 421s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 421s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 421s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 421s Error: Could not restart systemd, systemd binary not working 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 421s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 421s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 421s Setting up libc-bin (2.39-3.1ubuntu3) ... 421s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 421s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 421s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 422s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 422s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 422s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 422s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 422s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 422s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 422s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 422s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 422s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 422s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 422s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 422s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 422s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 422s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 422s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 422s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 422s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 422s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 422s Setting up locales (2.39-3.1ubuntu3) ... 423s Generating locales (this might take a while)... 425s en_US.UTF-8... done 425s Generation complete. 425s Setting up openssl (3.2.2-1ubuntu1) ... 425s Installing new version of config file /etc/ssl/openssl.cnf ... 425s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 425s Setting up telnet (0.17+2.5-5ubuntu1) ... 425s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 425s Installing new version of config file /etc/pam.d/sshd ... 426s Processing triggers for ufw (0.36.2-6) ... 426s Processing triggers for systemd (256-1ubuntu1) ... 427s Processing triggers for man-db (2.12.1-2) ... 428s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 428s Reading package lists... 428s Building dependency tree... 428s Reading state information... 430s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 431s autopkgtest [22:57:37]: rebooting testbed after setup commands that affected boot 540s Reading package lists... 541s Building dependency tree... 541s Reading state information... 541s Starting pkgProblemResolver with broken count: 0 541s Starting 2 pkgProblemResolver with broken count: 0 541s Done 542s The following additional packages will be installed: 542s ca-certificates-java default-jdk-headless default-jre-headless java-common 542s libjpeg-turbo8 libjpeg8 liblcms2-2 libpcsclite1 libssw-java 542s openjdk-21-jdk-headless openjdk-21-jre-headless 542s Suggested packages: 542s default-jre liblcms2-utils pcscd openjdk-21-demo openjdk-21-source 542s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 542s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic 542s Recommended packages: 542s libcups2t64 libfontconfig1 libfreetype6 libharfbuzz0b libasound2t64 542s The following NEW packages will be installed: 542s autopkgtest-satdep ca-certificates-java default-jdk-headless 542s default-jre-headless java-common libjpeg-turbo8 libjpeg8 liblcms2-2 542s libpcsclite1 libssw-java openjdk-21-jdk-headless openjdk-21-jre-headless 542s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 542s Need to get 118 MB/118 MB of archives. 542s After this operation, 257 MB of additional disk space will be used. 542s Get:1 /tmp/autopkgtest.C8FAho/2-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [724 B] 542s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf ca-certificates-java all 20240118 [11.6 kB] 542s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf java-common all 0.75+exp1 [6798 B] 542s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB] 542s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB] 542s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B] 542s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf libpcsclite1 armhf 2.2.3-1 [24.6 kB] 542s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openjdk-21-jre-headless armhf 21.0.4~6ea-1ubuntu1 [39.6 MB] 543s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf default-jre-headless armhf 2:1.21-75+exp1 [3094 B] 543s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf openjdk-21-jdk-headless armhf 21.0.4~6ea-1ubuntu1 [78.0 MB] 545s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf default-jdk-headless armhf 2:1.21-75+exp1 [960 B] 545s Get:12 http://ftpmaster.internal/ubuntu oracular/universe armhf libssw-java armhf 1.1-14build1 [20.3 kB] 546s Fetched 118 MB in 3s (34.3 MB/s) 546s Selecting previously unselected package ca-certificates-java. 546s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 546s Preparing to unpack .../00-ca-certificates-java_20240118_all.deb ... 546s Unpacking ca-certificates-java (20240118) ... 546s Selecting previously unselected package java-common. 546s Preparing to unpack .../01-java-common_0.75+exp1_all.deb ... 546s Unpacking java-common (0.75+exp1) ... 546s Selecting previously unselected package liblcms2-2:armhf. 546s Preparing to unpack .../02-liblcms2-2_2.14-2build1_armhf.deb ... 546s Unpacking liblcms2-2:armhf (2.14-2build1) ... 546s Selecting previously unselected package libjpeg-turbo8:armhf. 546s Preparing to unpack .../03-libjpeg-turbo8_2.1.5-2ubuntu2_armhf.deb ... 546s Unpacking libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 546s Selecting previously unselected package libjpeg8:armhf. 546s Preparing to unpack .../04-libjpeg8_8c-2ubuntu11_armhf.deb ... 546s Unpacking libjpeg8:armhf (8c-2ubuntu11) ... 546s Selecting previously unselected package libpcsclite1:armhf. 546s Preparing to unpack .../05-libpcsclite1_2.2.3-1_armhf.deb ... 546s Unpacking libpcsclite1:armhf (2.2.3-1) ... 546s Selecting previously unselected package openjdk-21-jre-headless:armhf. 546s Preparing to unpack .../06-openjdk-21-jre-headless_21.0.4~6ea-1ubuntu1_armhf.deb ... 546s Unpacking openjdk-21-jre-headless:armhf (21.0.4~6ea-1ubuntu1) ... 547s Selecting previously unselected package default-jre-headless. 547s Preparing to unpack .../07-default-jre-headless_2%3a1.21-75+exp1_armhf.deb ... 547s Unpacking default-jre-headless (2:1.21-75+exp1) ... 547s Selecting previously unselected package openjdk-21-jdk-headless:armhf. 547s Preparing to unpack .../08-openjdk-21-jdk-headless_21.0.4~6ea-1ubuntu1_armhf.deb ... 547s Unpacking openjdk-21-jdk-headless:armhf (21.0.4~6ea-1ubuntu1) ... 547s Selecting previously unselected package default-jdk-headless. 548s Preparing to unpack .../09-default-jdk-headless_2%3a1.21-75+exp1_armhf.deb ... 548s Unpacking default-jdk-headless (2:1.21-75+exp1) ... 548s Selecting previously unselected package libssw-java. 548s Preparing to unpack .../10-libssw-java_1.1-14build1_armhf.deb ... 548s Unpacking libssw-java (1.1-14build1) ... 548s Selecting previously unselected package autopkgtest-satdep. 548s Preparing to unpack .../11-2-autopkgtest-satdep.deb ... 548s Unpacking autopkgtest-satdep (0) ... 548s Setting up liblcms2-2:armhf (2.14-2build1) ... 548s Setting up java-common (0.75+exp1) ... 548s Setting up libssw-java (1.1-14build1) ... 548s Setting up libpcsclite1:armhf (2.2.3-1) ... 548s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ... 548s Setting up ca-certificates-java (20240118) ... 548s No JRE found. Skipping Java certificates setup. 548s Setting up libjpeg8:armhf (8c-2ubuntu11) ... 548s Setting up openjdk-21-jre-headless:armhf (21.0.4~6ea-1ubuntu1) ... 548s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode 548s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 548s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 548s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 548s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 548s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 548s Processing triggers for man-db (2.12.1-2) ... 548s Processing triggers for ca-certificates-java (20240118) ... 549s Adding debian:ACCVRAIZ1.pem 549s Adding debian:AC_RAIZ_FNMT-RCM.pem 549s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 549s Adding debian:ANF_Secure_Server_Root_CA.pem 549s Adding debian:Actalis_Authentication_Root_CA.pem 549s Adding debian:AffirmTrust_Commercial.pem 549s Adding debian:AffirmTrust_Networking.pem 549s Adding debian:AffirmTrust_Premium.pem 549s Adding debian:AffirmTrust_Premium_ECC.pem 549s Adding debian:Amazon_Root_CA_1.pem 549s Adding debian:Amazon_Root_CA_2.pem 549s Adding debian:Amazon_Root_CA_3.pem 549s Adding debian:Amazon_Root_CA_4.pem 549s Adding debian:Atos_TrustedRoot_2011.pem 549s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 549s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 549s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 549s Adding debian:BJCA_Global_Root_CA1.pem 549s Adding debian:BJCA_Global_Root_CA2.pem 549s Adding debian:Baltimore_CyberTrust_Root.pem 549s Adding debian:Buypass_Class_2_Root_CA.pem 549s Adding debian:Buypass_Class_3_Root_CA.pem 549s Adding debian:CA_Disig_Root_R2.pem 549s Adding debian:CFCA_EV_ROOT.pem 549s Adding debian:COMODO_Certification_Authority.pem 549s Adding debian:COMODO_ECC_Certification_Authority.pem 549s Adding debian:COMODO_RSA_Certification_Authority.pem 549s Adding debian:Certainly_Root_E1.pem 549s Adding debian:Certainly_Root_R1.pem 549s Adding debian:Certigna.pem 549s Adding debian:Certigna_Root_CA.pem 549s Adding debian:Certum_EC-384_CA.pem 549s Adding debian:Certum_Trusted_Network_CA.pem 549s Adding debian:Certum_Trusted_Network_CA_2.pem 549s Adding debian:Certum_Trusted_Root_CA.pem 549s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 549s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 549s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 549s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 549s Adding debian:Comodo_AAA_Services_root.pem 549s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 549s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 549s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 549s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 549s Adding debian:DigiCert_Assured_ID_Root_CA.pem 549s Adding debian:DigiCert_Assured_ID_Root_G2.pem 549s Adding debian:DigiCert_Assured_ID_Root_G3.pem 549s Adding debian:DigiCert_Global_Root_CA.pem 549s Adding debian:DigiCert_Global_Root_G2.pem 549s Adding debian:DigiCert_Global_Root_G3.pem 549s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 549s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 549s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 549s Adding debian:DigiCert_Trusted_Root_G4.pem 549s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 549s Adding debian:Entrust_Root_Certification_Authority.pem 549s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 549s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 549s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 549s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 549s Adding debian:GLOBALTRUST_2020.pem 549s Adding debian:GTS_Root_R1.pem 549s Adding debian:GTS_Root_R2.pem 549s Adding debian:GTS_Root_R3.pem 549s Adding debian:GTS_Root_R4.pem 549s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 549s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 549s Adding debian:GlobalSign_Root_CA.pem 549s Adding debian:GlobalSign_Root_CA_-_R3.pem 549s Adding debian:GlobalSign_Root_CA_-_R6.pem 549s Adding debian:GlobalSign_Root_E46.pem 549s Adding debian:GlobalSign_Root_R46.pem 549s Adding debian:Go_Daddy_Class_2_CA.pem 549s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 549s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 549s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 549s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 549s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 549s Adding debian:HiPKI_Root_CA_-_G1.pem 549s Adding debian:Hongkong_Post_Root_CA_3.pem 549s Adding debian:ISRG_Root_X1.pem 549s Adding debian:ISRG_Root_X2.pem 549s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 549s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 549s Adding debian:Izenpe.com.pem 549s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 549s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 549s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 549s Adding debian:NAVER_Global_Root_Certification_Authority.pem 549s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 549s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 549s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 549s Adding debian:QuoVadis_Root_CA_1_G3.pem 549s Adding debian:QuoVadis_Root_CA_2.pem 549s Adding debian:QuoVadis_Root_CA_2_G3.pem 549s Adding debian:QuoVadis_Root_CA_3.pem 549s Adding debian:QuoVadis_Root_CA_3_G3.pem 549s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 549s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 549s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 549s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 549s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 549s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 549s Adding debian:SZAFIR_ROOT_CA2.pem 549s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 549s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 549s Adding debian:SecureSign_RootCA11.pem 549s Adding debian:SecureTrust_CA.pem 549s Adding debian:Secure_Global_CA.pem 549s Adding debian:Security_Communication_ECC_RootCA1.pem 549s Adding debian:Security_Communication_RootCA2.pem 549s Adding debian:Security_Communication_RootCA3.pem 549s Adding debian:Security_Communication_Root_CA.pem 549s Adding debian:Starfield_Class_2_CA.pem 549s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 549s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 549s Adding debian:SwissSign_Gold_CA_-_G2.pem 549s Adding debian:SwissSign_Silver_CA_-_G2.pem 549s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 549s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 549s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 549s Adding debian:TWCA_Global_Root_CA.pem 549s Adding debian:TWCA_Root_Certification_Authority.pem 549s Adding debian:TeliaSonera_Root_CA_v1.pem 549s Adding debian:Telia_Root_CA_v2.pem 549s Adding debian:TrustAsia_Global_Root_CA_G3.pem 549s Adding debian:TrustAsia_Global_Root_CA_G4.pem 549s Adding debian:Trustwave_Global_Certification_Authority.pem 549s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 549s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 549s Adding debian:TunTrust_Root_CA.pem 549s Adding debian:UCA_Extended_Validation_Root.pem 549s Adding debian:UCA_Global_G2_Root.pem 549s Adding debian:USERTrust_ECC_Certification_Authority.pem 549s Adding debian:USERTrust_RSA_Certification_Authority.pem 549s Adding debian:XRamp_Global_CA_Root.pem 549s Adding debian:certSIGN_ROOT_CA.pem 549s Adding debian:certSIGN_Root_CA_G2.pem 549s Adding debian:e-Szigno_Root_CA_2017.pem 549s Adding debian:ePKI_Root_Certification_Authority.pem 549s Adding debian:emSign_ECC_Root_CA_-_C3.pem 549s Adding debian:emSign_ECC_Root_CA_-_G3.pem 549s Adding debian:emSign_Root_CA_-_C1.pem 549s Adding debian:emSign_Root_CA_-_G1.pem 549s Adding debian:vTrus_ECC_Root_CA.pem 549s Adding debian:vTrus_Root_CA.pem 549s done. 549s Setting up openjdk-21-jdk-headless:armhf (21.0.4~6ea-1ubuntu1) ... 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode 549s update-alternatives: using /usr/lib/jvm/java-21-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode 549s Setting up default-jre-headless (2:1.21-75+exp1) ... 549s Setting up default-jdk-headless (2:1.21-75+exp1) ... 549s Setting up autopkgtest-satdep (0) ... 561s (Reading database ... 58923 files and directories currently installed.) 561s Removing autopkgtest-satdep (0) ... 573s autopkgtest [22:59:59]: test build-lib-java: [----------------------- 577s Aligning nucleotides 577s score1=21 score2=8 ref_begin1=8 ref_end1=21 read_begin1=0 read_end1=14 ref_end2=4 cigar=9M1I5M 577s autopkgtest [23:00:03]: test build-lib-java: -----------------------] 581s build-lib-java PASS 581s autopkgtest [23:00:07]: test build-lib-java: - - - - - - - - - - results - - - - - - - - - - 586s autopkgtest [23:00:12]: test run-example: preparing testbed 641s autopkgtest [23:01:07]: testbed dpkg architecture: armhf 643s autopkgtest [23:01:09]: testbed apt version: 2.9.6 643s autopkgtest [23:01:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 651s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 652s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 652s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [360 kB] 652s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [3288 B] 652s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.5 kB] 652s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [57.9 kB] 652s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1440 B] 652s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 652s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 652s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [309 kB] 652s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6960 B] 652s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1796 B] 652s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 654s Fetched 922 kB in 1s (1143 kB/s) 654s Reading package lists... 670s tee: /proc/self/fd/2: Permission denied 692s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 692s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 692s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 692s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 693s Reading package lists... 693s Reading package lists... 694s Building dependency tree... 694s Reading state information... 694s Calculating upgrade... 695s The following packages will be upgraded: 695s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 695s openssh-server openssh-sftp-server openssl telnet 695s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 695s Need to get 11.9 MB of archives. 695s After this operation, 285 kB of additional disk space will be used. 695s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 696s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 696s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 696s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 696s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 696s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 696s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 696s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 696s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 696s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 696s Preconfiguring packages ... 696s Fetched 11.9 MB in 1s (11.8 MB/s) 696s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 696s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 697s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 697s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 697s Error: Could not restart systemd, systemd binary not working 697s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 697s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 697s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 697s Setting up libc-bin (2.39-3.1ubuntu3) ... 697s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 697s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 697s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 697s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 697s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 697s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 697s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 698s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 698s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 698s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 698s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 698s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 698s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 698s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 698s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 698s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 698s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 698s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 698s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 698s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 698s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 698s Setting up locales (2.39-3.1ubuntu3) ... 699s Generating locales (this might take a while)... 701s en_US.UTF-8... done 701s Generation complete. 701s Setting up openssl (3.2.2-1ubuntu1) ... 701s Installing new version of config file /etc/ssl/openssl.cnf ... 701s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 701s Setting up telnet (0.17+2.5-5ubuntu1) ... 701s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 701s Installing new version of config file /etc/pam.d/sshd ... 703s Processing triggers for ufw (0.36.2-6) ... 703s Processing triggers for systemd (256-1ubuntu1) ... 703s Processing triggers for man-db (2.12.1-2) ... 705s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 705s Reading package lists... 706s Building dependency tree... 706s Reading state information... 707s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 713s autopkgtest [23:02:19]: rebooting testbed after setup commands that affected boot 822s Reading package lists... 823s Building dependency tree... 823s Reading state information... 823s Starting pkgProblemResolver with broken count: 0 823s Starting 2 pkgProblemResolver with broken count: 0 823s Done 824s The following additional packages will be installed: 824s libssw0 ssw-align 824s The following NEW packages will be installed: 824s autopkgtest-satdep libssw0 ssw-align 824s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 824s Need to get 45.4 kB/46.1 kB of archives. 824s After this operation, 103 kB of additional disk space will be used. 824s Get:1 /tmp/autopkgtest.C8FAho/3-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 824s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf libssw0 armhf 1.1-14build1 [22.7 kB] 824s Get:3 http://ftpmaster.internal/ubuntu oracular/universe armhf ssw-align armhf 1.1-14build1 [22.7 kB] 825s Fetched 45.4 kB in 0s (154 kB/s) 825s Selecting previously unselected package libssw0:armhf. 825s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 825s Preparing to unpack .../libssw0_1.1-14build1_armhf.deb ... 825s Unpacking libssw0:armhf (1.1-14build1) ... 825s Selecting previously unselected package ssw-align. 825s Preparing to unpack .../ssw-align_1.1-14build1_armhf.deb ... 825s Unpacking ssw-align (1.1-14build1) ... 825s Selecting previously unselected package autopkgtest-satdep. 825s Preparing to unpack .../3-autopkgtest-satdep.deb ... 825s Unpacking autopkgtest-satdep (0) ... 825s Setting up libssw0:armhf (1.1-14build1) ... 825s Setting up ssw-align (1.1-14build1) ... 825s Setting up autopkgtest-satdep (0) ... 825s Processing triggers for man-db (2.12.1-2) ... 825s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 837s (Reading database ... 58448 files and directories currently installed.) 837s Removing autopkgtest-satdep (0) ... 850s autopkgtest [23:04:36]: test run-example: [----------------------- 853s target_name: chr1 853s query_name: chr1 853s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 853s 853s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 853s 853s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 853s 853s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 853s 853s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 853s 853s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 853s 853s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 853s 853s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 853s 853s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 853s 853s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 853s 853s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 853s 853s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 853s 853s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 853s 853s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 853s 853s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 853s 853s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 853s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 853s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 853s 998s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 998s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 998s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 998s 998s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 998s ||||||||||||||||||||||||||||||||||||||||| 998s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 998s 998s target_name: chr2 998s query_name: chr1 998s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 998s 998s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 998s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 998s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 998s 998s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 998s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 998s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 998s 998s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 998s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 998s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 998s 998s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 998s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 998s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 998s 998s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 998s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 998s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 998s 998s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 998s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 998s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 998s 998s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 998s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 998s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 998s 998s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 998s | *||*||||||| ||**| | |||||||| |*||| ||| 998s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 998s 998s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 998s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 998s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 998s 998s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 998s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 998s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 998s 998s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 998s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 998s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 998s 998s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 998s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 998s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 998s 998s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 998s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 998s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 998s 998s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 1013s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 1013s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 1013s 1013s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 1013s || || || |||| || || || |||*|||| |||| |*|| || ||| || 1013s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 1013s 1013s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 1013s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 1013s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 1013s 1013s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 1013s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 1013s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 1013s 1013s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 1013s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 1013s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 1013s 1013s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 1013s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 1013s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 1013s 1013s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 1013s *||||| |*|||*||||| 1013s Query: 955 --TACTTC-TAATTTTTCAC 971 1013s 1013s target_name: chr3 1013s query_name: chr1 1013s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 1013s 1013s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 1013s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 1013s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 1013s 1013s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 1013s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 1013s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 1013s 1013s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 1013s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 1013s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 1013s 1013s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 1013s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 1013s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 1013s 1013s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 1013s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 1013s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 1013s 1013s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 1013s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 1013s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 1013s 1013s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 1013s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 1013s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 1013s 1013s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 1013s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 1013s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 1013s 1013s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 1013s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 1014s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 1014s 1014s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 1014s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 1014s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 1014s 1014s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 1014s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 1014s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 1014s 1014s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 1014s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 1014s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 1014s 1014s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 1014s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 1014s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 1014s 1014s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 1014s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 1014s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 1014s 1014s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 1014s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 1014s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 1014s 1014s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 1014s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 1014s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 1014s 1014s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 1014s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 1014s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 1014s 1014s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 1014s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 1014s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 1014s 1014s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 1014s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 1014s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 1014s 1014s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 1014s *|||| |*|||||*||| || |*|||*||*|| 1014s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 1014s 1014s target_name: chr4 1014s query_name: chr1 1014s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 1014s 1014s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 1014s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 1014s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 1014s 1014s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 1014s ||| || |||***||| |||| |||| |||| || ||| || 1014s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 1014s 1014s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 1014s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 1014s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 1014s 1014s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 1014s || |||| ||||||| || |*|||||*||||*|*|| 1014s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 1014s 1014s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 1014s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 1014s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 1014s 1014s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 1014s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 1014s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 1014s 1014s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 1014s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 1014s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 1014s 1014s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 1014s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 1014s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 1014s 1014s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 1014s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 1014s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 1014s 1014s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 1014s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 1014s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 1014s 1014s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 1014s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 1014s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 1014s 1014s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 1014s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 1014s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 1014s 1014s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 1014s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 1014s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 1014s 1014s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 1014s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 1014s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 1014s 1014s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 1014s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 1014s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 1014s 1014s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 1014s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 1014s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 1014s 1014s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 1014s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 1014s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 1014s 1014s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 1014s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 1014s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 1014s 1014s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 1014s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 1014s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 1014s 1014s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 1014s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 1014s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CATCACATAAT 986 1014s 1014s Target: 48049 GAA---AT--AAAGTA 48059 1014s ||| || ||| || 1014s Query: 987 GAATGGATCCAAA-TA 1001 1014s 1014s target_name: chr5 1014s query_name: chr1 1014s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 1014s 1014s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 1014s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 1014s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 1014s 1014s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 1014s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 1014s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1014s 1014s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 1014s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 1014s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 1014s 1014s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 1014s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 1014s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 1014s 1014s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 1014s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 1014s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 1014s 1014s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 1014s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 1014s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 1014s 1014s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 1014s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 1014s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 1014s 1014s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 1014s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 1014s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 1014s 1014s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 1014s | |||||| ||||*|| | || | ||| |*||*||| || 1014s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 1014s 1014s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 1014s |||****| |||| |*|*|***|||*| ||*|*| ||| || 1014s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 1014s 1014s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 1014s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 1014s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 1014s 1014s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 1014s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 1014s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 1014s 1014s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 1014s | | || |||| ||||| |*|| |||| ||||*||| |||| || 1014s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 1014s 1014s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 1014s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 1014s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 1014s 1014s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 1014s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 1014s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 1014s 1014s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 1014s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 1014s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 1014s 1014s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 1014s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 1014s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 1014s 1014s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 1014s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 1014s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 1014s 1014s Target: 9707 TGTTGATTGTTTC-CTTT 9723 1014s |**|*||| |||| |||| 1014s Query: 958 TTCTAATT-TTTCACTTT 974 1014s 1014s CPU time: 161.909134 seconds 1015s target_name: chr1 1015s query_name: chr1 1015s optimal_alignment_score: 2002 suboptimal_alignment_score: 1000 strand: + target_begin: 1 target_end: 1001 query_begin: 1 query_end: 1001 1015s 1015s Target: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 1 TAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCAC 60 1015s 1015s Target: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 61 TACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1015s 1015s Target: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 121 AAACATAGGAAAAAATTATTTAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTTA 180 1015s 1015s Target: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 181 TAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACC 240 1015s 1015s Target: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 241 CAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTC 300 1015s 1015s Target: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 301 ACATGTATTCATTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCAT 360 1015s 1015s Target: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 361 AGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATG 420 1015s 1015s Target: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 421 GTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC 480 1015s 1015s Target: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 481 TGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGAGAGAAAATTTCACT 540 1015s 1015s Target: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 541 CCCTCCATAAATCTCACAGTATTCTTTTCTTTTTCCTTTCCTTTCCTTGCTCTTCTTTCT 600 1015s 1015s Target: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 601 CTCCTATTGCTTTCCTTTCATTTCCTTCTCATAAAAGAAAAATAACAATATAGAAAATAA 660 1015s 1015s Target: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 661 CAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAG 720 1015s 1015s Target: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 721 TGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGA 780 1015s 1015s Target: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 781 GTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGAC 840 1015s 1015s Target: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 1015s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1015s Query: 841 TTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCT 900 1015s 1159s Target: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1159s |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 1159s Query: 901 TAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTC 960 1159s 1159s Target: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1159s ||||||||||||||||||||||||||||||||||||||||| 1159s Query: 961 TAATTTTTCACTTTACATCACATAATGAATGGATCCAAATA 1001 1159s 1159s target_name: chr2 1159s query_name: chr1 1159s optimal_alignment_score: 312 suboptimal_alignment_score: 311 strand: + target_begin: 4437430 target_end: 4438470 query_begin: 9 query_end: 971 1159s 1159s Target: 4437430 TTGAT-TCCACAGATTCCAATAGAATAGTTTGAAGATGGAACAATTGAGAATTCTGAATG 4437488 1159s ||*|| *|||| || | |||| ||||*|**||| |**||*|*| ||**||| ||| 1159s Query: 9 TTAATCGCCAC-GA--C--ATAG--TAGTATTTAGA-GTTACTAGT---AAGCCTG-ATG 56 1159s 1159s Target: 4437489 ---CTAAGCTAAT--TAGATATGTTTTCTTTGAAGGAAAACTACATTGTATTATTTTGCC 4437543 1159s |||**| ||| |||*| | ||*||||| |||| | *|||||*|*|||**| 1159s Query: 57 CCACTACAC-AATTCTAGCT-T-TTCTCTTT--AGGA----T-GATTGTTTCATTCAG-- 104 1159s 1159s Target: 4437544 TCCTCCCTCCTCCTAGAAGCCTT----TAAAATTCATGCATCATTTTAAAAGTTTTGAAA 4437599 1159s ||*|**|| ||**|||||**|*| *|||||| || *|*||**||||| ||| || 1159s Query: 105 TCTTATCT-CTTTTAGAAAACATAGGAAAAAATT-AT--TTAATAATAAAA-TTT--AA- 156 1159s 1159s Target: 4437600 TTTTTCAAGATTATGTTTAA-GTAT--ATTA-AATATTTTGTTCAGTCATCCCAATTAGT 4437655 1159s ||**||| | ||| || |||| *||| ||*| *|||| |*||*||| || 1159s Query: 157 -TTGGCAA-A--ATG---AAGGTATGGCTTATAAGA--GTGTT------TTCCTATT-GT 200 1159s 1159s Target: 4437656 TTTCAATG--G----CCCT-TTCCATTTAAAGAGTTTGGACATTCCATATAAAAAAG-AC 4437707 1159s |||||*|| | |*|| ||| ||||*|**|*||||| *||| |**|****| |* 1159s Query: 201 TTTCAGTGTAGGACTCACTGTTC----TAAATAACTGGGACA-CCCA-AGGATTCTGTAA 254 1159s 1159s Target: 4437708 AATGTCATCTACA-TTTTC-TTTGTTTT--CT---T---AATT-AT----ATCTTTTCCT 4437752 1159s ||||*|||| || ||*|| |||*|*|| || | |||| || ||*|*|||*| 1159s Query: 255 AATGCCATC--CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCAT 312 1159s 1159s Target: 4437753 TTTTACAAATTTCTTAA-AAA-TAG-GTGTAAGATCTCTGATTTAACCTATGTGCGT--- 4437806 1159s ||| |||||*|| ||| ||| *||| |||**|||| *||||**|*|| ||*| 1159s Query: 313 TTT------TTTCTAAACAAATTAGCATGT-AGAATTCTG-GTTAAAATTTG-GCATAGA 363 1159s 1159s Target: 4437807 -C------TTAATTTTTCA----GCTTC---T--CTGTCATT---TTATT-AGATGTTTT 4437846 1159s | *||*||||||| ||**| | |||||||| |*||| ||| 1159s Query: 364 ACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGA------ 417 1159s 1159s Target: 4437847 TATTGT-TTTTAA------TTACTAAATTAATCTTAATCTATG-CTTATTATATCATTCT 4437898 1159s ||*|| *||||| *||*||||*|*|| **||*|*||| |**|**|*|||**||| 1159s Query: 418 -ATGGTGATTTAACAAAGGATAATAAAGTTAT-GAAACCAATGCCACAAAACATCTGTCT 475 1159s 1159s Target: 4437899 CCATTAC--GT-TATGGATACAACAACT-TG-GTGAATGTTTCTG----AGATTAACACT 4437949 1159s | |*|| || |*||**| *| || |||**|||*|*|| |||***|*|** 1159s Query: 476 C--TAACTGGTGTGTGTGT-------GTGTGTGTGTGTGTGTGTGTGTAAGAGGGAGAGA 526 1159s 1159s Target: 4437950 AAAAATATTTAACAATCTCTCTCATTTTTATC----TTTTC-TTTCTTTTTCTCTTTGTC 4438004 1159s *|*||*|||| ||*||*||| |||***|*|| |*||| |||||||||| |||| *| 1159s Query: 527 GAGAAAATTT--CACTCCCTC-CATAAATCTCACAGTATTCTTTTCTTTTTC-CTTT-CC 581 1159s 1159s Target: 4438005 TTT-CTCACTCTCTATTTATCCTGTTACATCTTTGCTTCTATCTCTTTCTCTGTTTTTTT 4438063 1159s ||| ||**|||| |*|||*| ||**|| |||||| || ||||| *|||**|| 1159s Query: 582 TTTCCTTGCTCT-TCTTTCT-CTCCTA-----TTGCTT---TC-CTTTC---ATTTCCTT 627 1159s 1159s Target: 4438064 TTTTTAATATTTAAATAATGCTTCTGTCTGAGGAGGTTAAGAAGTGAAAGAAGACATTGT 4438123 1159s *|**|||*|***|||||| |**|*| || || || | ||*||*|*|| 1159s Query: 628 CTCATAAAAGAAAAATAA-----CAATAT-AG------AA-AA-T--AACAAAATAT--- 668 1159s 1159s Target: 4438124 GAGATGGAGAATCTTTATTAAGATAGAAG---AC--AAAGAGGGGATGAT-----GTGGA 4438173 1173s ||||||**||*|||| ||||*|| *||| || ||| |*|**||*|| |||| 1173s Query: 669 -AGATGGTCAACCTTT-TTAATAT-TAAGGTTACCTAAA-ATGCCATTATCCAAAGTGG- 723 1173s 1173s Target: 4438174 CACTT-TC-AG-GATG-TGGAATGGT---TACATACATTATT---CTGT-TA-TCACAAG 4438221 1173s || || || |||| || || || |||*|||| |||| |*|| || ||| || 1173s Query: 724 ---TTCTCTAGAGATGCTG--AT-GTATATACTTACA-TATTTTACAGTGTATTCA-AA- 774 1173s 1173s Target: 4438222 GTTAGCTAA-ACTCTCTTTCATAA-A-ATCTCTCTTGTTTCTTACTCCCTAAATCTCAAA 4438278 1173s || || |*|*|*||*||||| | ||*|| || |||*|*|| | || || 1173s Query: 775 --TA---AAGAGTATATTACATAAGACATATC-CT--TTTGTAAC-C---AA--CT---- 816 1173s 1173s Target: 4438279 TAAGTGACTAAAAAATGCCTGGA--TGACCCCAAACAGTAAGAATAGCTTGTA-GGTCTC 4438335 1173s |**||*|*|||*||*|**||||| ||*|**||||| *|| ||| | |||| *||||* 1173s Query: 817 TTTGTCATTAACAATTTACTGGACTTGTCAACAAAC-CTA--AAT--C-TGTATCGTCTA 870 1173s 1173s Target: 4438336 TGAAG---ATGTTATCTTTTGCCCTGGGAAGGTGGATTCCTATACTAACACCTGCACTTG 4438392 1173s |*|*| |*|| ||*||| |||*| ||*|| || ||*|*||*||| || 1173s Query: 871 TAATGGCTACGT--TCATTT----TGGTA---TGAAT--CT-TAATTACCCCT----TT- 913 1173s 1173s Target: 4438393 AAAAGGTGAACAAGATAATTTTGTATTTATTTTCTCACTA--CCACTGCAGGTAGCATGG 4438450 1173s *|| | ||*||| ||*|*||||||||| || *|||| | *|| *||| 1173s Query: 914 -----CTG--C---ATTATT---TAATGATTTTCTCA-TATGTCACT-C--TTA-AATG- 954 1173s 1173s Target: 4438451 GACACTTCTTTATTATTCAC 4438470 1173s *||||| |*|||*||||| 1173s Query: 955 --TACTTC-TAATTTTTCAC 971 1173s 1173s target_name: chr3 1173s query_name: chr1 1173s optimal_alignment_score: 291 suboptimal_alignment_score: 289 strand: + target_begin: 680970 target_end: 682002 query_begin: 9 query_end: 998 1173s 1173s Target: 680970 TTAAATTGTCA--ACATGGTA-TATATGAAATGAATTGGGTTTATAATAGTAAACCAATC 681026 1173s || |||*|*|| ||||*||| ||| |*| || || ||*||||||*|| |* 1173s Query: 9 TT-AATCGCCACGACATAGTAGTAT-TTA---GA-----GT---TACTAGTAAGCC--TG 53 1173s 1173s Target: 681027 TTG-CATTCCTAAAA---TA--AATCCTATTTAG--TTATCGT--------GTGTTATTT 681070 1173s *|| ||*|*| |*|| || **|*||*||||| |*||*|| ||*||| |* 1173s Query: 54 ATGCCACTAC-ACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTA-TC 111 1173s 1173s Target: 681071 TCTT----AATACAGTGTTGGATTAAGTTTGCTATTTTTTATTTTAAAATTTTACATTAT 681126 1173s |||| ||*||| |*|||**||*| || |||*||**||||| |||| || 1173s Query: 112 TCTTTTAGAAAACA---TAGGAAAAAAT----TA--TTTAATAATAAAA-TTTA----AT 157 1173s 1173s Target: 681127 TTTCTTCAGTGA---TATTGACCTGT---AGTTTTCTTTCATTATACTGTTTTATCAGAT 681180 1173s |**| **|*||| || ||*|*|*| |||*| |||| *||| ||||| |||| | 1173s Query: 158 TGGC-AAAATGAAGGTA-TGGCTTATAAGAGTGT--TTTC-CTAT--TGTTT--TCAG-T 207 1173s 1173s Target: 681181 TTAGGTATCAGTGTTAT-AGTTTCT---TCATGAAAGGAAT---TAAGATGTTTTCCTTC 681233 1173s *||||**|||*||||*| |*|**|| *||***|||||*| |||*||| ||*|| 1173s Query: 208 GTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATG----CCATC 263 1173s 1173s Target: 681234 C-CTT-TCA---ATGTT------CTGAATAATCATACAGCAT-TA-TGACTATCTGCCAT 681280 1173s | *|| ||| ||*|| ||*||*|*||||*|| ||| || |*|*|*|*| | 1173s Query: 264 CAGTTATCATTTATATTCCCTAACTCAAAATTCATTCA-CATGTATTCATTTTTT----T 318 1173s 1173s Target: 681281 TTAAATC--TTTAGAAT----AATTACCTTGTGAAACTATGTGGGCTTGGTGCTATTTTG 681334 1173s *|||| | *||||*|| |||| ||*||*||| || |*|||*|*|**| | ***| 1173s Query: 319 CTAAA-CAAATTAGCATGTAGAATT--CTGGTTAAA--AT-TTGGCATAGAAC-A-CCCG 370 1173s 1173s Target: 681335 TGTAGTATTTATC-TAATTGTTTCCTATA--TTTC-TT--CTA--TGAAATTGGTTGATT 681386 1173s *||| | |||*|| ||| ||***||*||| |*|| || ||| |||*|*||| ||||| 1173s Query: 371 GGTA-T-TTTTTCATAA-TGCACCCAATAACTGTCATTCACTAATTGAGAATGG-TGATT 426 1173s 1173s Target: 681387 TAATCTTTCTAACACTAATAAGATTAATTTGAGTAAACTTCATTTCTCTAGAAAATAATT 681446 1173s ||| |*||***||||||**||| || |||| ||*|*| | |*||||*| | 1175s Query: 427 TAA-----CAAAGGATAATAAAGTTA---TG---AAAC--CAATGC-C-ACAAAACA--T 469 1175s 1175s Target: 681447 AATTCATCAAATTAAATCAAATTTGAAATTTGATTTCAAATTTATTTGTGTCAAAGTAA- 681505 1175s ***|| || |||*|****|*|| |*|| |*| *|*|*|*|||||****|||| 1175s Query: 470 CTGTC-TC----TAACTGGTGTGTG---TGTG-TGT---GTGTGTGTGTGTGTGTGTAAG 517 1175s 1175s Target: 681506 A-GGAG-G--------TTTC-CT--GT-CATTTTAAAATTCTC----TGTTGTTTTAATA 681547 1175s | |||| | |||| || *| || |||| |||| |*||*|||| *|* 1175s Query: 518 AGGGAGAGAGAGAAAATTTCACTCCCTCCA---TAAA--TCTCACAGTATTCTTTT-CTT 571 1175s 1175s Target: 681548 GTAACTT--GTTT-CTTATTATTTATAACTTTAT---ATATT--TGTACTT---TTTCCT 681596 1175s *|**||| *||| |||**|*|| ||||*| *|||| |*|*||| ||||| 1175s Query: 572 TTTCCTTTCCTTTCCTTGCTCTT-----CTTTCTCTCCTATTGCTTTCCTTTCATTTCC- 625 1175s 1175s Target: 681597 TTTTTATCAAATG--AACT--GAGTTT------TAAC-----ATCGCAT--TTAA---TT 681636 1175s ||*|*|| |||*| ||*| *|*|*| |||| ||*| || |*|| || 1175s Query: 626 TTCTCAT-AAAAGAAAAATAACAATATAGAAAATAACAAAATATAG-ATGGTCAACCTTT 683 1175s 1175s Target: 681637 TTAATTATCTAATCTAAATCTAAAAGCTGATATTTGATTCAA-----TTGTC-AGAAATC 681690 1175s |||| ||| |||**| *|*|||||| ||**||| ||*||| ||*|| |||*|| 1175s Query: 684 TTAA-TAT-TAAGGT-TACCTAAAA--TGCCATT--ATCCAAAGTGGTTCTCTAGAGAT- 735 1175s 1175s Target: 681691 TCTTAAGTATATTGGGATCAACTTGGAAAAGTAAATTGACTTTAAACAGTACACTT--TA 681748 1175s *||*|*|||||| |||| |*| | ||| || |||||**| || *| 1175s Query: 736 GCTGATGTATAT--------ACTT--ACA--T--ATT---TT---ACAGTGTA-TTCAAA 774 1175s 1175s Target: 681749 TGAACTTTAAATTACAGATCAGATAT--TTTTAGTAA--AA-TTTTATCCAAACTAAGAT 681803 1175s |*||***||*||||||*|**|*|||| |||| |||| || ||||*|| |*||| 1175s Query: 775 TAAAGAGTATATTACATAAGACATATCCTTTT-GTAACCAACTTTTGTC---ATTAA--- 827 1175s 1175s Target: 681804 GCAATATGAGTATAATCACTGATTCAA-AAAGCTTCCTTTAGTGAGCATGAAATATC-TC 681861 1175s |||| |*|*|**|*| || |||| ||| || || *|*| || |||| | 1175s Query: 828 -CAAT-TTACTGGACT---TG--TCAACAAA----CC--TA--AATC-TG---TATCGT- 867 1175s 1175s Target: 681862 ACTATTTTAAT---T---TTAATATTGATTGTGTGTTAAAATAATAATAATTGCATTAT- 681914 1175s ||| |||| | ||*||*||| ||*|| |||**||||*|***|*||*| 1175s Query: 868 -CTA---TAATGGCTACGTTCATTTTG---GTATG----AATCTTAATTACCCCTTTCTG 916 1175s 1175s Target: 681915 -ATTATTGATAATGTGTATTCTTGTCATGTTTCCATTCTTACTGGAAATG--CCTCCAGT 681971 1175s |||||| ||||| ||| ||*||||*|*| ||*|||| ||||| |*||*|*| 1175s Query: 917 CATTATT--TAATG---ATT-TTCTCATATGT-CACTCTT-----AAATGTACTTCTAAT 964 1175s 1175s Target: 681972 GTTTC----TCCATCAAATAGTAT-ACTGGCTCTAA 682002 1175s *|||| |*|||||*||| || |*|||*||*|| 1175s Query: 965 TTTTCACTTTACATCACATA--ATGAATGGATCCAA 998 1175s 1175s target_name: chr4 1175s query_name: chr1 1175s optimal_alignment_score: 280 suboptimal_alignment_score: 273 strand: + target_begin: 47000 target_end: 48059 query_begin: 2 query_end: 1001 1175s 1175s Target: 47000 AAACATCTT-ATAGCTACTGGATTCTTTTTTGCCTATGTATTTA----TA-TATGT--G- 47050 1175s |||||**|| ||*||*|| || | *|*| || ||||||| || || || | 1175s Query: 2 AAACAGGTTAATCGCCAC--GA--C---ATAG--TA-GTATTTAGAGTTACTA-GTAAGC 50 1175s 1175s Target: 47051 CTGTAT----CTATGTAATGTCTA--TTTTTATAAAGCTCTAATTGACCTAGAGGAAAAT 47104 1175s ||| || |||***||| |||| |||| |||| || ||| || 1175s Query: 51 CTG-ATGCCACTACACAAT-TCTAGCTTTT-------CTCT--TT-------AGG---AT 89 1175s 1175s Target: 47105 GA--GTTT--TTGAATCAAATAT-TTTTTGAAGGGAAAGTAAAAACTGTGGTACATTGAA 47159 1175s || |||| ||*|*||**||*| ||||*|||***|*||*||||| ||| | 1175s Query: 90 GATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGAAAAA---------ATT-A- 138 1175s 1175s Target: 47160 GTTCACATGACTAATCATTGAGAAATAAAAACAGACTTAGCAATTATTGGTAAAAAGCAG 47219 1175s || |||| ||||||| || |*|||||*||||*|*|| 1175s Query: 139 -TT--------TAAT--------AATAAAA------TT-----TAATTGGCAAAATGAAG 170 1175s 1175s Target: 47220 --ATG--TTAAAA-----TATAC--ATTTTTGTTCAGGGTTAAAGGA-T---TGTTCTGA 47264 1175s ||| |||*|| |*|*| |||*|| |||||*|| |||| | ||||||*| 1175s Query: 171 GTATGGCTTATAAGAGTGTTTTCCTATTGTT-TTCAGTGT---AGGACTCACTGTTCTAA 226 1175s 1175s Target: 47265 ATTA----GATA---A--GATAAAGCTAAAAGTTTAAACAAGTTATAA---AAAGTTTCT 47312 1175s ||*| ||*| | |||***| ||||| |***|*|*||||||*| |*|*|**|| 1175s Query: 227 ATAACTGGGACACCCAAGGATTCTG-TAAAA-TGCCATCCAGTTATCATTTATATTCCCT 284 1175s 1175s Target: 47313 A--T-AAAATTCATCTTGCCA-AAGAA---ATTTTGTCCATGAACATTAAATTACGAAAG 47365 1175s | | ||||||||| | || |*|*| |||||*|*| |*||| |||||| |*|*| 1175s Query: 285 AACTCAAAATTCAT-T---CACATGTATTCATTTTTTTC-TAAAC---AAATTA-GCATG 335 1175s 1175s Target: 47366 GTATTATATGTTTTTTTGGT--AAATTAAGCATTTAAATAATAGCACAACAAGGTA---- 47419 1175s ||*| *||*|||| |||||**|| ||||*|||*|**|||| 1175s Query: 336 ----TAGA----ATTCTGGTTAAAATTTGGC---------ATAGAACACCCGGGTATTTT 378 1175s 1175s Target: 47420 CTCTTAAGGCAC----TAATCTGCTCTTTAGCAAAATTTGTAAA--GTG--TTATAAACG 47471 1175s *||*|||*|||| ||| ||| ||*|| ||**|*|||**|| ||| |||**||*| 1175s Query: 379 TTCATAATGCACCCAATAA-CTG-TCATT--CACTAATTGAGAATGGTGATTTAACAAAG 434 1175s 1175s Target: 47472 GGTTTTACTTTTGTAAATTTTTTGAAACAATTGTGGCAAAA------TAAATAACATGGT 47525 1175s | | |**|||| *||*||||||*|*||***||||| |***|||| |||| 1175s Query: 435 G-----A---TAATAAA-GTTATGAAACCAATGCCACAAAACATCTGTCTCTAAC-TGGT 484 1175s 1175s Target: 47526 AATCTG-GAAT-TCTATTTCATAACATCAAGTGT-TTTAA-------ACCTCTAACATTT 47575 1175s *|*|| |**| |*|*|*| *| *| |||| |*||| |*****||*|||| 1175s Query: 485 -GTGTGTGTGTGTGTGTGT-GT---GT---GTGTGTGTAAGAGGGAGAGAGAGAAAATTT 536 1175s 1175s Target: 47576 C-TTC---CCA-AAATCAAAC----TTCAGTTTCAAAATTGT--CTTTCCT---CGTGC- 47620 1175s | *|| ||| |||||**|| ||| *|||| ||*| ||||||| |*||| 1175s Query: 537 CACTCCCTCCATAAATCTCACAGTATTC-TTTTC----TTTTTCCTTTCCTTTCCTTGCT 591 1175s 1175s Target: 47621 CTGACTTT-TGAATGCTACAGAGGGC---CCCTGGAGTATCC-------AAAAGAGAGGT 47669 1175s || *|||| | || |**|**|| ||*|**| |*||| ||||||*|**| 1175s Query: 592 CT-TCTTTCT-----CT-CCTATTGCTTTCCTTTCA-TTTCCTTCTCATAAAAGAAAAAT 643 1175s 1175s Target: 47670 AAACTGGATTATTTGACATATTTAGTTACATGGGATTGCCAATCTTCTTTAGGTTATAT- 47728 1175s ||| |*|||***|*|||***|**||*| |||*|*|||*||| |||| |||| 1175s Query: 644 -AAC---AATATAGAAAATAACAAAATATA---GATGGTCAACCTT-TTTA----ATATT 691 1175s 1175s Target: 47729 -AGGTTA--TATTTTG--AT-----AAA-T-ATTCTATAGGTTATATTTTGATAAATGAT 47776 1175s |||||| ||***|| || ||| | *||||*||| |*||**||||**|| || 1175s Query: 692 AAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAG---AGATGCTGATGTAT-AT 747 1175s 1175s Target: 47777 ACTAATATATGTTCCAAAATTGTATGAGATTTCTAATGTCTGAGTATATGCTATCAAAAT 47836 1175s |||*|*||||*|| |*|*|||| |||*||| ***|||||||| || || 1175s Query: 748 ACTTACATATTTT---ACAGTGTA------TTCAAAT-AAAGAGTATAT--TA-CA---- 790 1175s 1175s Target: 47837 TAAG--GTTT--TTATGT---TAAGTTATTGT-A--AAC----CACAGAGA-TT---ATC 47878 1175s |||| *|*| ||*||| *||*|| |||| | ||| *||*| || || |*| 1175s Query: 791 TAAGACATATCCTTTTGTAACCAACTT-TTGTCATTAACAATTTACTG-GACTTGTCAAC 848 1175s 1175s Target: 47879 AAACTTCTTTGTCAACTGTGTTTCTGACTATAA---CTACCCTGGACATTTTGTTATTCA 47935 1175s |||| || ||*|*|||*|| |*|||||| |||| |**|||||||*||| 1175s Query: 849 AAAC--CT-----AAATCTGTATC-GTCTATAATGGCTAC---GTTCATTTTGGTAT--- 894 1175s 1175s Target: 47936 AAGACAATTGTCTTGTTTAGATCCTTTTCAAGAGATAGTTTATAAGA--AGCTACAGAAC 47993 1175s || | ||||**|| |*||*|||| *| *||**|||| |*|| **|| ||*| 1175s Query: 895 --GA-A----TCTTAATT--ACCCCTTTC-TG-CATTATTTA-ATGATTTTCT-CATA-- 939 1175s 1175s Target: 47994 TGTGACAGGTGCTCTCAAATGCAGTTTTCCAA---ATAACTTTGGAGATCATGACAT--T 48048 1175s ||| || ||||*|||||*| *|||*|| *|*||||| | |||*|||| | 1175s Query: 940 TGT--CA----CTCTTAAATGTA--CTTCTAATTTTTCACTTT--A---CACPU time: 160.607727 seconds 1175s TCACATAAT 986 1175s 1175s Target: 48049 GAA---AT--AAAGTA 48059 1175s ||| || ||| || 1175s Query: 987 GAATGGATCCAAA-TA 1001 1175s 1175s target_name: chr5 1175s query_name: chr1 1175s optimal_alignment_score: 230 suboptimal_alignment_score: 199 strand: + target_begin: 8806 target_end: 9723 query_begin: 11 query_end: 974 1175s 1175s Target: 8806 AATGGCCAGGGCACTGAGGAG-CTGTGGAAGAACTGGGGAAATCACCGAAACCCAGTAC- 8863 1175s |||*||||*|*|| | ||*|| *|*|*||***||| *|*||*| |*| |**|||*||| 1175s Query: 11 AATCGCCACGACA-T-AGTAGTATTTAGAGTTACT--AGTAAGC-CTG-ATGCCACTACA 64 1175s 1175s Target: 8864 CATTTCAGTGAGGCCATTCTC--CA--AAAACTCTCTC---CA-TCTTATTTCTT---G- 8911 1175s ||*||| | | ||**||||| *| |**|*|*|*|| || ||||||*|||| | 1175s Query: 65 CAATTC--T-A-GCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGA 120 1175s 1175s Target: 8912 ------GGGAAAGAGTTCTTCTACT--TACAATATGAT---CAACCTGA--TTAAG---A 8955 1175s *|||||*|*||*|| ||*| ||*|||*|*|| |||**||| *||*| * 1175s Query: 121 AAACATAGGAAAAAATTATT-TAATAATAAAATTTAATTGGCAAAATGAAGGTATGGCTT 179 1175s 1175s Target: 8956 AT-ATATTGGTTT-CTATAACTGTGATGCAGATTATAACTATACAAATGCCAATTACCAG 9013 1175s || |*|*||*||| |||| ||| *|*|||**||**||| | |*|| || |*|* 1175s Query: 180 ATAAGAGTGTTTTCCTAT---TGT-TTTCAGTGTAGGACT---C-ACTG----TT-CTAA 226 1175s 1175s Target: 9014 A-AGCTAAGCCACCC--TGATTC--CAAAAT---AT--AGTCTCACATTTCATGGTTTCC 9063 1175s | |*||**|*||||| *||||| *||||| || ||| |**||||| || *|||| 1175s Query: 227 ATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGT-TATCATTT-AT--ATTCC 282 1175s 1175s Target: 9064 TGGTA--TCAGAAATCCCTATGAGCCTG-A--GATTTTTTCCCTTAA-------AGCA-- 9109 1175s *|| ||| ||||*|*| |*| |*|| | *|||||||*| ||| |||| 1175s Query: 283 --CTAACTCA-AAATTCAT-TCA-CATGTATTCATTTTTTTC--TAAACAAATTAGCATG 335 1175s 1175s Target: 9110 ---AATACTG---AAGAT-----A-AGAA-ACC----AATTAATTTCATTGTTGC----- 9147 1175s |||*||| ||*|| | |||| ||| *||| *||||| |**||| 1175s Query: 336 TAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATT-TTTTCA-TAATGCACCCA 393 1175s 1175s Target: 9148 -TATCTTGT-AT---CCAATGGCATAA----AATCTATACTAACTTGATTAGAAA-TTCT 9197 1175s ||*| ||| || |*|||*| |*|| *||*|| ||*|| *|||*|*||| ||*| 1175s Query: 394 ATAAC-TGTCATTCACTAATTG-AGAATGGTGATTTA-ACAAA--GGATAATAAAGTTAT 448 1175s 1175s Target: 9198 G---CCAATG------AACAACT-T---TA--T--TGT-TTTGAGTGATG---------- 9229 1175s | |||||| ||||*|| | || | ||| |*||*||| || 1175s Query: 449 GAAACCAATGCCACAAAACATCTGTCTCTAACTGGTGTGTGTGTGTG-TGTGTGTGTGTG 507 1175s 1175s Target: 9230 -------AAGCCCCATTTGAGA-ATATAGGCTCAATGGCCTTGC-----TCT-----TA- 9270 1175s |||****| |||| |*|*|***|||*| ||*|*| ||| || 1175s Query: 508 TGTGTGTAAGAGGGA---GAGAGAGAAAATTTCACT--CCCTCCATAAATCTCACAGTAT 562 1175s 1175s Target: 9271 ACTGTTCTCTATGCAGTCACTTTCTTCTGCACTAAAGTGCCAATACAGATACTG-AATAC 9329 1175s *||*||||*|*|*|**|| |||||*| |||*|| **|**|**|*| ||*|| **|*| 1175s Query: 563 TCTTTTCTTTTTCCTTTC-CTTTCCT-TGCTCT--TCTTTCTCTCC---TATTGCTTTCC 615 1175s 1175s Target: 9330 ATTGATTTAAAT-ACATAGATATATAAATA--GATAT-TTAAATATGC--AATATATATG 9383 1175s *||*||||***| *|||| |*|*|*||||| *|||| **||||| *| ||||||*||| 1175s Query: 616 TTTCATTTCCTTCTCATA-AAAGAAAAATAACAATATAGAAAATA-ACAAAATATAGATG 673 1175s 1175s Target: 9384 G--ATAC---TTTATATATT--GATT---TAAA----CATTTTCC--------TCTCATA 9421 1175s | | || |||| ||||| |*|| |||| ||||*||| |||| || 1175s Query: 674 GTCA-ACCTTTTTA-ATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTC-TA 730 1175s 1175s Target: 9422 GA-----TGA--AAAATCACTCTAACATGTATTGATGGCTTCACA-AGAAATCATTTACA 9473 1175s || ||| *|*|| ||| | ||| |||| || ||| *|*|*|||**||*| 1175s Query: 731 GAGATGCTGATGTATAT-ACT-T-ACA--TATT------TT-ACAGTGTATTCAAATAAA 778 1175s 1175s Target: 9474 GAAAATAATTGCATATGATACAGT--GTTTGTGCCAAAATGTATTCATGGCTTTAAAAAC 9531 1175s ||**|| |||*||||*||*|*| | *|||||**|*||*| || ||*|*||||*|| 1175s Query: 779 GAGTAT-ATTACATAAGACATA-TCCTTTTGTAACCAACT---TT--TGTCATTAACAA- 830 1175s 1175s Target: 9532 TTCAGTGGAAATGTCTATTCAGATCCCTAGCCCATTGTTAAATTGGTTTCTGTTTTCTTG 9591 1175s ||*|*||||**||||*| || |*|| |||||**||*|| | ||| 1175s Query: 831 TTTACTGGACTTGTCAA--CA-AACC------------TAAATCTGTATC-G---TCT-- 869 1175s 1175s Target: 9592 CTAAGTTTGAGCTGC-TTATAGATGATGGATATTGACCCCTTATAGATGTTGGATATTGA 9650 1175s *||| || |||*| || *||**||| || ||| ||*|| | ||| | 1175s Query: 870 ATAA---TG-GCTACGTT---CATTTTGG-TA-TGA----------ATCTT--A-ATT-A 906 1175s 1175s Target: 9651 CCCC-TTGTGGATGTATGGCCGGTGCTTTTCCCAGTATTTAGGTCATCTCTGCA---CAC 9706 1175s |||| ||*||*|| ||| ****||*|||||*|| ||| |||| ||||**| *|| 1175s Query: 907 CCCCTTTCTGCAT-TAT--TTAATGATTTTCTCA-TAT----GTCA-CTCTTAAATGTAC 957 1175s 1175s Target: 9707 TGTTGATTGTTTC-CTTT 9723 1175s |**|*||| |||| |||| 1175s Query: 958 TTCTAATT-TTTCACTTT 974 1175s 1176s autopkgtest [23:10:02]: test run-example: -----------------------] 1180s autopkgtest [23:10:06]: test run-example: - - - - - - - - - - results - - - - - - - - - - 1180s run-example PASS 1184s autopkgtest [23:10:10]: @@@@@@@@@@@@@@@@@@@@ summary 1184s build-lib PASS 1184s build-lib-java PASS 1184s run-example PASS