0s autopkgtest [21:35:14]: starting date and time: 2024-07-09 21:35:14+0000
  0s autopkgtest [21:35:14]: git checkout: fd3bed09 nova: allow more retries for quota issues
  0s autopkgtest [21:35:14]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s5_m51uo/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-6 -- lxd -r lxd-armhf-10.145.243.177 lxd-armhf-10.145.243.177:autopkgtest/ubuntu/oracular/armhf
 25s autopkgtest [21:35:39]: testbed dpkg architecture: armhf
 27s autopkgtest [21:35:41]: testbed apt version: 2.9.6
 27s autopkgtest [21:35:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 37s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB]
 37s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [357 kB]
 37s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 37s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [52.9 kB]
 37s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B]
 37s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [73.5 kB]
 37s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1824 B]
 37s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B]
 37s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B]
 37s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [291 kB]
 37s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6132 B]
 37s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1448 B]
 37s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B]
 39s Fetched 922 kB in 1s (1258 kB/s)
 39s Reading package lists...
 58s tee: /proc/self/fd/2: Permission denied
 81s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 81s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 81s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 82s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 83s Reading package lists...
 83s Reading package lists...
 83s Building dependency tree...
 83s Reading state information...
 84s Calculating upgrade...
 84s The following packages will be upgraded:
 84s   libpcap0.8t64
 84s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 84s Need to get 137 kB of archives.
 84s After this operation, 0 B of additional disk space will be used.
 84s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf libpcap0.8t64 armhf 1.10.4-5ubuntu1 [137 kB]
 85s Fetched 137 kB in 0s (395 kB/s)
 85s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58416 files and directories currently installed.)
 85s Preparing to unpack .../libpcap0.8t64_1.10.4-5ubuntu1_armhf.deb ...
 85s Unpacking libpcap0.8t64:armhf (1.10.4-5ubuntu1) over (1.10.4-4.1ubuntu3) ...
 85s Setting up libpcap0.8t64:armhf (1.10.4-5ubuntu1) ...
 85s Processing triggers for man-db (2.12.1-2) ...
 85s Processing triggers for libc-bin (2.39-0ubuntu9) ...
 86s Reading package lists...
 86s Building dependency tree...
 86s Reading state information...
 87s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 89s autopkgtest [21:36:43]: rebooting testbed after setup commands that affected boot
129s autopkgtest [21:37:23]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun  3 16:28:24 UTC 2
155s autopkgtest [21:37:49]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread
165s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (dsc) [2434 B]
165s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (tar) [404 kB]
165s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-6 (diff) [9024 B]
165s gpgv: Signature made Tue Jul  9 11:19:40 2024 UTC
165s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
165s gpgv: Can't check signature: No public key
165s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-6.dsc: no acceptable signature found
166s autopkgtest [21:38:00]: testing package gffread version 0.12.7-6
168s autopkgtest [21:38:02]: build not needed
170s autopkgtest [21:38:04]: test run-tests: preparing testbed
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
188s Starting pkgProblemResolver with broken count: 0
188s Starting 2 pkgProblemResolver with broken count: 0
188s Done
189s The following additional packages will be installed:
189s   apache2 apache2-bin apache2-data apache2-utils augustus-doc bedtools-test
189s   bioperl blt cnvkit emboss-data emboss-test fontconfig fontconfig-config
189s   fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 gbrowse
189s   genometools-common gff2aplot gff2ps gffread htslib-test
189s   libalgorithm-diff-perl libanyevent-cachedns-perl libanyevent-http-perl
189s   libanyevent-perl libaom3 libapache-dbi-perl libapache2-mod-perl2 libapr1t64
189s   libaprutil1-dbd-sqlite3 libaprutil1-ldap libaprutil1t64
189s   libbio-coordinate-perl libbio-db-biofetch-perl libbio-db-gff-perl
189s   libbio-db-seqfeature-perl libbio-graphics-perl libbio-perl-perl libblas3
189s   libcairo2 libcapture-tiny-perl libcgi-pm-perl libcgi-session-perl
189s   libclass-data-inheritable-perl libclone-perl libcommon-sense-perl
189s   libdata-stag-perl libdatrie1 libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl
189s   libde265-0 libdeflate0 libdevel-stacktrace-perl libdevel-symdump-perl
189s   libencode-locale-perl libexception-class-perl libexporter-tiny-perl
189s   libfile-listing-perl libfontconfig1 libfontenc1 libfreetype6 libgclib3t64
189s   libgd-perl libgd3 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
189s   libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libhtml-parser-perl
189s   libhtml-tagset-perl libhtml-tree-perl libhts3t64 libhtscodecs2
189s   libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
189s   libhttp-message-perl libhttp-negotiate-perl libice6 libimagequant0
189s   libio-html-perl libio-socket-ssl-perl libio-string-perl libjbig0
189s   libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-prototype
189s   libjs-scriptaculous libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4
189s   liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.1-0 liblua5.4-0
189s   liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl
189s   libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
189s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5
189s   libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libstatistics-descriptive-perl
189s   libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl
189s   libtest-deep-perl libtest-differences-perl libtest-exception-perl
189s   libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0
189s   libtiff6 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl liburi-perl
189s   libvm-ec2-perl libwebp7 libwebpdemux2 libwebpmux3 libwww-perl
189s   libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl
189s   libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
189s   libxml-simple-perl libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64
189s   perl-openssl-defaults python-matplotlib-data python3-appdirs
189s   python3-argcomplete python3-argh python3-biopython python3-brotli
189s   python3-cairo python3-contourpy python3-cycler python3-dateutil
189s   python3-decorator python3-fonttools python3-freetype python3-fs
189s   python3-gffutils python3-importlib-metadata python3-joblib
189s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
189s   python3-mpmath python3-networkx python3-numpy python3-packaging
189s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
189s   python3-pomegranate python3-pyfaidx python3-pysam python3-reportlab
189s   python3-rlpycairo python3-scipy python3-simplejson python3-sklearn
189s   python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk
189s   python3-tz python3-ufolib2 python3-unicodedata2 python3-zipp r-base-core
189s   r-bioc-biocgenerics r-bioc-dnacopy sgml-base sqlite3 tk8.6-blt2.5
189s   unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings
189s   xfonts-utils xml-core zip
189s Suggested packages:
189s   apache2-doc apache2-suexec-pristine | apache2-suexec-custom www-browser
189s   bedtools blt-demo valgrind fonts-freefont-otf | fonts-freefont-ttf
189s   fonts-texgyre gbrowse-data gbrowse-calign libfile-nfslock-perl
189s   postscript-viewer libev-perl libevent-perl libio-async-perl libpoe-perl
189s   libtask-weaken-perl libxml-sax-expatxs-perl libmldbm-perl libnet-daemon-perl
189s   libsql-statement-perl libgd-tools libheif-plugin-x265
189s   libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
189s   libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
189s   libheif-plugin-svtenc libdata-dump-perl libio-compress-brotli-perl
189s   libjs-jquery-ui-docs liblcms2-utils libcrypt-ssleay-perl tcl8.6 tk8.6
189s   tre-agrep libsub-name-perl libbusiness-isbn-perl libregexp-ipv6-perl
189s   libauthen-ntlm-perl debhelper bwa clustalo clustalw dialign dssp emboss
189s   fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb
189s   python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise
189s   python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
189s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
189s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
189s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
189s   python3-gmpy2 python3-gdal python3-pydot python3-pygraphviz gcc gfortran
189s   python-numpy-doc python3-dev python3-pytest python-pandas-doc
189s   python3-statsmodels python-pil-doc python-pomegranate-doc pdf-viewer
189s   python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm
189s   python-scipy-doc python3-dap python-sklearn-doc texlive-fonts-extra
189s   python-sympy-doc tix python3-tk-dbg elpa-ess r-doc-info | r-doc-pdf
189s   r-mathlib r-base-html r-bioc-biobase r-bioc-s4vectors r-bioc-iranges
189s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
189s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit
189s   sgml-base-doc sqlite3-doc
189s Recommended packages:
189s   ssl-cert bioperl-run perl-doc libcache-cache-perl libbio-perl-run-perl
189s   libyaml-perl libace-perl libxml-twig-perl libset-scalar-perl tcsh | csh
189s   | c-shell graphicsmagick | imagemagick ghostscript gv | postscript-viewer
189s   libalgorithm-diff-xs-perl libasync-interrupt-perl libev-perl | libevent-perl
189s   libguard-perl libapache2-reload-perl libbsd-resource-perl libbio-scf-perl
189s   libberkeleydb-perl libgd-svg-perl bioperl-run | libbio-perl-run-perl
189s   libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl
189s   libconvert-binary-c-perl libdbd-mysql-perl libgraph-perl libgraphviz-perl
189s   libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl
189s   libsort-naturally-perl libspreadsheet-parseexcel-perl
189s   libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
189s   libxml-dom-xpath-perl libxml-parser-perl libxml-sax-writer-perl
189s   libxml-writer-perl libcgi-fast-perl libfreezethaw-perl perl-tk
189s   libxml-libxslt-perl libmldbm-perl libxml-perl libheif-plugin-aomenc
189s   libhtml-format-perl javascript-common libjson-xs-perl libdata-dump-perl
189s   libhtml-form-perl libmailtools-perl libxml-sax-expat-perl
189s   python-biopython-doc ncbi-blast+ python3-pybedtools python3-pytest
189s   python3-psutil python3-bs4 python3-cssselect python3-html5lib
189s   python3-bottleneck python3-numexpr python3-odf python3-openpyxl
189s   python3-tables python3-olefile fonts-dejavu-extra g++ | c++-compiler
189s   isympy-common r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl
189s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
189s The following NEW packages will be installed:
189s   apache2 apache2-bin apache2-data apache2-utils augustus-doc
189s   autopkgtest-satdep bedtools-test bioperl blt cnvkit emboss-data emboss-test
189s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
189s   fonts-urw-base35 gbrowse genometools-common gff2aplot gff2ps gffread
189s   htslib-test libalgorithm-diff-perl libanyevent-cachedns-perl
189s   libanyevent-http-perl libanyevent-perl libaom3 libapache-dbi-perl
189s   libapache2-mod-perl2 libapr1t64 libaprutil1-dbd-sqlite3 libaprutil1-ldap
189s   libaprutil1t64 libbio-coordinate-perl libbio-db-biofetch-perl
189s   libbio-db-gff-perl libbio-db-seqfeature-perl libbio-graphics-perl
189s   libbio-perl-perl libblas3 libcairo2 libcapture-tiny-perl libcgi-pm-perl
189s   libcgi-session-perl libclass-data-inheritable-perl libclone-perl
189s   libcommon-sense-perl libdata-stag-perl libdatrie1 libdbd-pg-perl
189s   libdbd-sqlite3-perl libdbi-perl libde265-0 libdeflate0
189s   libdevel-stacktrace-perl libdevel-symdump-perl libencode-locale-perl
189s   libexception-class-perl libexporter-tiny-perl libfile-listing-perl
189s   libfontconfig1 libfontenc1 libfreetype6 libgclib3t64 libgd-perl libgd3
189s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libheif-plugin-aomdec
189s   libheif-plugin-libde265 libheif1 libhtml-parser-perl libhtml-tagset-perl
189s   libhtml-tree-perl libhts3t64 libhtscodecs2 libhttp-cookies-perl
189s   libhttp-daemon-perl libhttp-date-perl libhttp-message-perl
189s   libhttp-negotiate-perl libice6 libimagequant0 libio-html-perl
189s   libio-socket-ssl-perl libio-string-perl libjbig0 libjpeg-turbo8 libjpeg8
189s   libjs-jquery libjs-jquery-ui libjs-prototype libjs-scriptaculous
189s   libjson-perl liblapack3 liblbfgsb0 liblcms2-2 liblerc4
189s   liblist-moreutils-perl liblist-moreutils-xs-perl liblua5.1-0 liblua5.4-0
189s   liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl
189s   libnet-ssleay-perl libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0
189s   libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpq5
189s   libqhull-r8.0 libraqm0 libsharpyuv0 libsm6 libstatistics-descriptive-perl
189s   libstring-approx-perl libsub-uplevel-perl libtcl8.6 libterm-readkey-perl
189s   libtest-deep-perl libtest-differences-perl libtest-exception-perl
189s   libtest-most-perl libtest-warn-perl libtext-diff-perl libthai-data libthai0
189s   libtiff6 libtimedate-perl libtk8.6 libtre5 libtry-tiny-perl liburi-perl
189s   libvm-ec2-perl libwebp7 libwebpdemux2 libwebpmux3 libwww-perl
189s   libwww-robotrules-perl libxcb-render0 libxcb-shm0 libxft2 libxml-libxml-perl
189s   libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
189s   libxml-simple-perl libxpm4 libxrender1 libxslt1.1 libxss1 libxt6t64
189s   perl-openssl-defaults python-matplotlib-data python3-appdirs
189s   python3-argcomplete python3-argh python3-biopython python3-brotli
189s   python3-cairo python3-contourpy python3-cycler python3-dateutil
189s   python3-decorator python3-fonttools python3-freetype python3-fs
189s   python3-gffutils python3-importlib-metadata python3-joblib
189s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
189s   python3-mpmath python3-networkx python3-numpy python3-packaging
189s   python3-pandas python3-pandas-lib python3-pil python3-pil.imagetk
189s   python3-pomegranate python3-pyfaidx python3-pysam python3-reportlab
189s   python3-rlpycairo python3-scipy python3-simplejson python3-sklearn
189s   python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk
189s   python3-tz python3-ufolib2 python3-unicodedata2 python3-zipp r-base-core
189s   r-bioc-biocgenerics r-bioc-dnacopy sgml-base sqlite3 tk8.6-blt2.5
189s   unicode-data unzip w3c-sgml-lib x11-common xdg-utils xfonts-encodings
189s   xfonts-utils xml-core zip
189s 0 upgraded, 221 newly installed, 0 to remove and 0 not upgraded.
189s Need to get 281 MB/281 MB of archives.
189s After this operation, 1379 MB of additional disk space will be used.
189s Get:1 /tmp/autopkgtest.VqEpHy/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [820 B]
189s Get:2 http://ftpmaster.internal/ubuntu oracular/main armhf libapr1t64 armhf 1.7.2-3.2 [86.0 kB]
189s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libaprutil1t64 armhf 1.6.3-2ubuntu1 [82.5 kB]
189s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf libaprutil1-dbd-sqlite3 armhf 1.6.3-2ubuntu1 [9584 B]
189s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf libaprutil1-ldap armhf 1.6.3-2ubuntu1 [8490 B]
189s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf liblua5.4-0 armhf 5.4.6-3build2 [133 kB]
189s Get:7 http://ftpmaster.internal/ubuntu oracular/main armhf apache2-bin armhf 2.4.59-2ubuntu2 [1206 kB]
190s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf apache2-data all 2.4.59-2ubuntu2 [163 kB]
190s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf apache2-utils armhf 2.4.59-2ubuntu2 [98.0 kB]
190s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf apache2 armhf 2.4.59-2ubuntu2 [90.3 kB]
190s Get:11 http://ftpmaster.internal/ubuntu oracular/main armhf sgml-base all 1.31 [11.4 kB]
190s Get:12 http://ftpmaster.internal/ubuntu oracular/universe armhf augustus-doc all 3.5.0+dfsg-4build5 [23.5 MB]
190s Get:13 http://ftpmaster.internal/ubuntu oracular/universe armhf bedtools-test all 2.31.1+dfsg-2 [18.2 MB]
191s Get:14 http://ftpmaster.internal/ubuntu oracular/main armhf libio-string-perl all 1.08-4 [11.1 kB]
191s Get:15 http://ftpmaster.internal/ubuntu oracular/universe armhf libdata-stag-perl all 0.14-3 [372 kB]
191s Get:16 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-perl-perl all 1.7.8-1 [2580 kB]
191s Get:17 http://ftpmaster.internal/ubuntu oracular/main armhf libclass-data-inheritable-perl all 0.08-3 [8084 B]
191s Get:18 http://ftpmaster.internal/ubuntu oracular/main armhf libdevel-stacktrace-perl all 2.0500-1 [22.1 kB]
191s Get:19 http://ftpmaster.internal/ubuntu oracular/main armhf libexception-class-perl all 1.45-1 [28.6 kB]
191s Get:20 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-deep-perl all 1.204-1 [47.1 kB]
191s Get:21 http://ftpmaster.internal/ubuntu oracular/main armhf libcapture-tiny-perl all 0.48-2 [20.2 kB]
191s Get:22 http://ftpmaster.internal/ubuntu oracular/main armhf libalgorithm-diff-perl all 1.201-1 [41.8 kB]
191s Get:23 http://ftpmaster.internal/ubuntu oracular/universe armhf libtext-diff-perl all 1.45-2 [25.6 kB]
191s Get:24 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-differences-perl all 0.71-1 [15.8 kB]
191s Get:25 http://ftpmaster.internal/ubuntu oracular/universe armhf libsub-uplevel-perl all 0.2800-3 [11.6 kB]
191s Get:26 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-exception-perl all 0.43-3 [13.4 kB]
191s Get:27 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-warn-perl all 0.37-2 [12.6 kB]
191s Get:28 http://ftpmaster.internal/ubuntu oracular/universe armhf libtest-most-perl all 0.38-1 [21.5 kB]
191s Get:29 http://ftpmaster.internal/ubuntu oracular/universe armhf bioperl all 1.7.8-1 [216 kB]
191s Get:30 http://ftpmaster.internal/ubuntu oracular/main armhf libtcl8.6 armhf 8.6.14+dfsg-1build1 [903 kB]
191s Get:31 http://ftpmaster.internal/ubuntu oracular/main armhf libfreetype6 armhf 2.13.2+dfsg-1build3 [331 kB]
191s Get:32 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-mono all 2.37-8 [502 kB]
191s Get:33 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-dejavu-core all 2.37-8 [835 kB]
191s Get:34 http://ftpmaster.internal/ubuntu oracular/main armhf libfontenc1 armhf 1:1.1.8-1build1 [11.5 kB]
191s Get:35 http://ftpmaster.internal/ubuntu oracular/main armhf x11-common all 1:7.7+23ubuntu3 [21.7 kB]
191s Get:36 http://ftpmaster.internal/ubuntu oracular/main armhf xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
191s Get:37 http://ftpmaster.internal/ubuntu oracular/main armhf xfonts-utils armhf 1:7.7+6build3 [88.3 kB]
191s Get:38 http://ftpmaster.internal/ubuntu oracular/main armhf fonts-urw-base35 all 20200910-8 [11.0 MB]
192s Get:39 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig-config armhf 2.15.0-1.1ubuntu2 [37.4 kB]
192s Get:40 http://ftpmaster.internal/ubuntu oracular/main armhf libfontconfig1 armhf 2.15.0-1.1ubuntu2 [113 kB]
192s Get:41 http://ftpmaster.internal/ubuntu oracular/main armhf libxrender1 armhf 1:0.9.10-1.1build1 [16.0 kB]
192s Get:42 http://ftpmaster.internal/ubuntu oracular/main armhf libxft2 armhf 2.3.6-1build1 [37.4 kB]
192s Get:43 http://ftpmaster.internal/ubuntu oracular/main armhf libxss1 armhf 1:1.2.3-1build3 [6500 B]
192s Get:44 http://ftpmaster.internal/ubuntu oracular/main armhf libtk8.6 armhf 8.6.14-1build1 [681 kB]
192s Get:45 http://ftpmaster.internal/ubuntu oracular/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7build1 [525 kB]
192s Get:46 http://ftpmaster.internal/ubuntu oracular/main armhf blt armhf 2.5.3+dfsg-7build1 [4840 B]
192s Get:47 http://ftpmaster.internal/ubuntu oracular/main armhf libblas3 armhf 3.12.0-3build1 [123 kB]
192s Get:48 http://ftpmaster.internal/ubuntu oracular/main armhf libgfortran5 armhf 14.1.0-1ubuntu1 [311 kB]
192s Get:49 http://ftpmaster.internal/ubuntu oracular/main armhf liblapack3 armhf 3.12.0-3build1 [2085 kB]
192s Get:50 http://ftpmaster.internal/ubuntu oracular/main armhf python3-numpy armhf 1:1.26.4+ds-10 [3541 kB]
192s Get:51 http://ftpmaster.internal/ubuntu oracular/main armhf python3-tk armhf 3.12.3-0ubuntu1 [99.2 kB]
192s Get:52 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pil.imagetk armhf 10.3.0-2 [8660 B]
192s Get:53 http://ftpmaster.internal/ubuntu oracular/main armhf libgomp1 armhf 14.1.0-1ubuntu1 [125 kB]
192s Get:54 http://ftpmaster.internal/ubuntu oracular/main armhf libimagequant0 armhf 2.18.0-1build1 [31.1 kB]
192s Get:55 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg-turbo8 armhf 2.1.5-2ubuntu2 [125 kB]
192s Get:56 http://ftpmaster.internal/ubuntu oracular/main armhf libjpeg8 armhf 8c-2ubuntu11 [2148 B]
192s Get:57 http://ftpmaster.internal/ubuntu oracular/main armhf liblcms2-2 armhf 2.14-2build1 [132 kB]
192s Get:58 http://ftpmaster.internal/ubuntu oracular/main armhf libopenjp2-7 armhf 2.5.0-2build3 [160 kB]
192s Get:59 http://ftpmaster.internal/ubuntu oracular/main armhf libgraphite2-3 armhf 1.3.14-2ubuntu1 [64.8 kB]
192s Get:60 http://ftpmaster.internal/ubuntu oracular/main armhf libharfbuzz0b armhf 8.3.0-2build2 [446 kB]
192s Get:61 http://ftpmaster.internal/ubuntu oracular/main armhf libraqm0 armhf 0.10.1-1build1 [12.4 kB]
192s Get:62 http://ftpmaster.internal/ubuntu oracular/main armhf libdeflate0 armhf 1.20-1 [38.3 kB]
192s Get:63 http://ftpmaster.internal/ubuntu oracular/main armhf libjbig0 armhf 2.1-6.1ubuntu2 [24.9 kB]
192s Get:64 http://ftpmaster.internal/ubuntu oracular/main armhf liblerc4 armhf 4.0.0+ds-4ubuntu2 [151 kB]
192s Get:65 http://ftpmaster.internal/ubuntu oracular/main armhf libsharpyuv0 armhf 1.4.0-0.1 [16.3 kB]
192s Get:66 http://ftpmaster.internal/ubuntu oracular/main armhf libwebp7 armhf 1.4.0-0.1 [184 kB]
192s Get:67 http://ftpmaster.internal/ubuntu oracular/main armhf libtiff6 armhf 4.5.1+git230720-4ubuntu3 [178 kB]
192s Get:68 http://ftpmaster.internal/ubuntu oracular/main armhf libwebpdemux2 armhf 1.4.0-0.1 [11.8 kB]
192s Get:69 http://ftpmaster.internal/ubuntu oracular/main armhf libwebpmux3 armhf 1.4.0-0.1 [22.5 kB]
192s Get:70 http://ftpmaster.internal/ubuntu oracular/main armhf python3-pil armhf 10.3.0-2 [423 kB]
192s Get:71 http://ftpmaster.internal/ubuntu oracular/main armhf libpixman-1-0 armhf 0.42.2-1build1 [193 kB]
192s Get:72 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-render0 armhf 1.17.0-2 [15.3 kB]
192s Get:73 http://ftpmaster.internal/ubuntu oracular/main armhf libxcb-shm0 armhf 1.17.0-2 [5774 B]
192s Get:74 http://ftpmaster.internal/ubuntu oracular/main armhf libcairo2 armhf 1.18.0-3build1 [482 kB]
192s Get:75 http://ftpmaster.internal/ubuntu oracular/main armhf python3-cairo armhf 1.26.1-1 [114 kB]
192s Get:76 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-freetype all 2.4.0-2 [81.3 kB]
192s Get:77 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-rlpycairo all 0.3.0-3 [9130 B]
192s Get:78 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-reportlab all 4.2.2-1 [1130 kB]
192s Get:79 http://ftpmaster.internal/ubuntu oracular/main armhf xml-core all 0.19 [20.3 kB]
192s Get:80 http://ftpmaster.internal/ubuntu oracular/universe armhf w3c-sgml-lib all 1.3-3 [280 kB]
192s Get:81 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-biopython armhf 1.83+dfsg1-3 [1627 kB]
192s Get:82 http://ftpmaster.internal/ubuntu oracular/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
192s Get:83 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
192s Get:84 http://ftpmaster.internal/ubuntu oracular/universe armhf fonts-lyx all 2.4.1-1 [171 kB]
192s Get:85 http://ftpmaster.internal/ubuntu oracular/universe armhf python-matplotlib-data all 3.6.3-2ubuntu1 [2937 kB]
192s Get:86 http://ftpmaster.internal/ubuntu oracular/main armhf python3-dateutil all 2.9.0-2 [80.3 kB]
192s Get:87 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-contourpy armhf 1.0.7-3 [171 kB]
192s Get:88 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-cycler all 0.12.1-1 [9716 B]
192s Get:89 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-brotli armhf 1.1.0-2build2 [321 kB]
192s Get:90 http://ftpmaster.internal/ubuntu oracular/main armhf python3-decorator all 5.1.1-5 [10.1 kB]
192s Get:91 http://ftpmaster.internal/ubuntu oracular/universe armhf liblbfgsb0 armhf 3.0+dfsg.4-1build1 [27.4 kB]
192s Get:92 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-scipy armhf 1.12.0-2 [16.1 MB]
193s Get:93 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
193s Get:94 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-mpmath all 1.3.0-1 [425 kB]
193s Get:95 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sympy all 1.12-8 [3966 kB]
193s Get:96 http://ftpmaster.internal/ubuntu oracular/main armhf python3-tz all 2024.1-2 [31.4 kB]
193s Get:97 http://ftpmaster.internal/ubuntu oracular/main armhf python3-appdirs all 1.4.4-4 [10.9 kB]
193s Get:98 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-fs all 2.4.16-4 [91.3 kB]
193s Get:99 http://ftpmaster.internal/ubuntu oracular/main armhf libxslt1.1 armhf 1.1.39-0exp1build1 [150 kB]
193s Get:100 http://ftpmaster.internal/ubuntu oracular/main armhf python3-lxml armhf 5.2.1-1 [1200 kB]
193s Get:101 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-lz4 armhf 4.0.2+dfsg-1build4 [24.8 kB]
193s Get:102 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-unicodedata2 armhf 15.1.0+ds-1build1 [361 kB]
193s Get:103 http://ftpmaster.internal/ubuntu oracular/universe armhf unicode-data all 15.1.0-1 [8878 kB]
194s Get:104 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-fonttools armhf 4.46.0-1build2 [1402 kB]
194s Get:105 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-kiwisolver armhf 1.4.5-1 [56.3 kB]
194s Get:106 http://ftpmaster.internal/ubuntu oracular/main armhf python3-packaging all 24.0-1 [41.1 kB]
194s Get:107 http://ftpmaster.internal/ubuntu oracular/universe armhf libqhull-r8.0 armhf 2020.2-6build1 [173 kB]
194s Get:108 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-matplotlib armhf 3.6.3-2ubuntu1 [5964 kB]
194s Get:109 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pandas-lib armhf 2.1.4+dfsg-8 [4461 kB]
194s Get:110 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pandas all 2.1.4+dfsg-8 [3042 kB]
194s Get:111 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-joblib all 1.3.2-2 [208 kB]
194s Get:112 http://ftpmaster.internal/ubuntu oracular/main armhf python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
195s Get:113 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pomegranate armhf 0.14.8-6 [2416 kB]
195s Get:114 http://ftpmaster.internal/ubuntu oracular/main armhf python3-zipp all 3.19.2-2 [10.2 kB]
195s Get:115 http://ftpmaster.internal/ubuntu oracular/main armhf python3-importlib-metadata all 8.0.0-2 [19.4 kB]
195s Get:116 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pyfaidx all 0.8.1.1-2 [29.6 kB]
195s Get:117 http://ftpmaster.internal/ubuntu oracular/universe armhf libhtscodecs2 armhf 1.6.0-1build1 [65.8 kB]
195s Get:118 http://ftpmaster.internal/ubuntu oracular/universe armhf libhts3t64 armhf 1.20+ds-1 [392 kB]
195s Get:119 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-pysam armhf 0.22.1+ds-2 [3383 kB]
195s Get:120 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-threadpoolctl all 3.1.0-1 [21.3 kB]
195s Get:121 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn-lib armhf 1.4.2+dfsg-3 [3587 kB]
195s Get:122 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-sklearn all 1.4.2+dfsg-3 [2257 kB]
195s Get:123 http://ftpmaster.internal/ubuntu oracular/main armhf zip armhf 3.0-13build1 [163 kB]
195s Get:124 http://ftpmaster.internal/ubuntu oracular/main armhf unzip armhf 6.0-28ubuntu5 [167 kB]
195s Get:125 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper1 armhf 1.1.29build1 [12.6 kB]
195s Get:126 http://ftpmaster.internal/ubuntu oracular/main armhf libpaper-utils armhf 1.1.29build1 [8184 B]
195s Get:127 http://ftpmaster.internal/ubuntu oracular/main armhf xdg-utils all 1.2.1-0ubuntu1 [67.5 kB]
195s Get:128 http://ftpmaster.internal/ubuntu oracular/main armhf fontconfig armhf 2.15.0-1.1ubuntu2 [189 kB]
195s Get:129 http://ftpmaster.internal/ubuntu oracular/main armhf libthai-data all 0.1.29-2build1 [158 kB]
195s Get:130 http://ftpmaster.internal/ubuntu oracular/main armhf libdatrie1 armhf 0.2.13-3build1 [15.7 kB]
195s Get:131 http://ftpmaster.internal/ubuntu oracular/main armhf libthai0 armhf 0.1.29-2build1 [15.2 kB]
195s Get:132 http://ftpmaster.internal/ubuntu oracular/main armhf libpango-1.0-0 armhf 1.54.0+ds-1 [209 kB]
195s Get:133 http://ftpmaster.internal/ubuntu oracular/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-1 [36.4 kB]
195s Get:134 http://ftpmaster.internal/ubuntu oracular/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-1 [24.8 kB]
195s Get:135 http://ftpmaster.internal/ubuntu oracular/main armhf libice6 armhf 2:1.0.10-1build3 [35.4 kB]
195s Get:136 http://ftpmaster.internal/ubuntu oracular/main armhf libsm6 armhf 2:1.2.3-1build3 [14.1 kB]
195s Get:137 http://ftpmaster.internal/ubuntu oracular/main armhf libxt6t64 armhf 1:1.2.1-1.2build1 [145 kB]
195s Get:138 http://ftpmaster.internal/ubuntu oracular/universe armhf r-base-core armhf 4.4.1-1 [28.1 MB]
196s Get:139 http://ftpmaster.internal/ubuntu oracular/universe armhf r-bioc-biocgenerics all 0.48.1-2 [595 kB]
196s Get:140 http://ftpmaster.internal/ubuntu oracular/universe armhf r-bioc-dnacopy armhf 1.76.0-1 [377 kB]
196s Get:141 http://ftpmaster.internal/ubuntu oracular/universe armhf cnvkit all 0.9.10-2 [20.5 MB]
197s Get:142 http://ftpmaster.internal/ubuntu oracular/universe armhf emboss-data all 6.6.0+dfsg-12ubuntu2 [61.0 MB]
200s Get:143 http://ftpmaster.internal/ubuntu oracular/universe armhf emboss-test all 6.6.0+dfsg-12ubuntu2 [4801 kB]
200s Get:144 http://ftpmaster.internal/ubuntu oracular/main armhf libaom3 armhf 3.9.1-1 [1712 kB]
200s Get:145 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-aomdec armhf 1.17.6-3build1 [9700 B]
200s Get:146 http://ftpmaster.internal/ubuntu oracular/main armhf libde265-0 armhf 1.0.15-1build3 [158 kB]
200s Get:147 http://ftpmaster.internal/ubuntu oracular/main armhf libheif-plugin-libde265 armhf 1.17.6-3build1 [10.3 kB]
200s Get:148 http://ftpmaster.internal/ubuntu oracular/main armhf libheif1 armhf 1.17.6-3build1 [266 kB]
200s Get:149 http://ftpmaster.internal/ubuntu oracular/main armhf libxpm4 armhf 1:3.5.17-1build2 [30.1 kB]
200s Get:150 http://ftpmaster.internal/ubuntu oracular/main armhf libgd3 armhf 2.3.3-9ubuntu5 [108 kB]
200s Get:151 http://ftpmaster.internal/ubuntu oracular/main armhf libgd-perl armhf 2.78-1build3 [127 kB]
200s Get:152 http://ftpmaster.internal/ubuntu oracular/main armhf libdevel-symdump-perl all 2.18-5 [12.6 kB]
200s Get:153 http://ftpmaster.internal/ubuntu oracular/main armhf liburi-perl all 5.28-1 [88.1 kB]
200s Get:154 http://ftpmaster.internal/ubuntu oracular/main armhf libencode-locale-perl all 1.05-3 [11.6 kB]
200s Get:155 http://ftpmaster.internal/ubuntu oracular/main armhf libtimedate-perl all 2.3300-2 [34.0 kB]
200s Get:156 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-date-perl all 6.06-1 [10.2 kB]
200s Get:157 http://ftpmaster.internal/ubuntu oracular/main armhf libfile-listing-perl all 6.16-1 [11.3 kB]
200s Get:158 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-tagset-perl all 3.24-1 [14.1 kB]
200s Get:159 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-parser-perl armhf 3.82-1 [82.4 kB]
200s Get:160 http://ftpmaster.internal/ubuntu oracular/main armhf libhtml-tree-perl all 5.07-3 [200 kB]
200s Get:161 http://ftpmaster.internal/ubuntu oracular/main armhf libclone-perl armhf 0.46-1build3 [10.0 kB]
200s Get:162 http://ftpmaster.internal/ubuntu oracular/main armhf libio-html-perl all 1.004-3 [15.9 kB]
200s Get:163 http://ftpmaster.internal/ubuntu oracular/main armhf liblwp-mediatypes-perl all 6.04-2 [20.1 kB]
200s Get:164 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-message-perl all 6.45-1ubuntu1 [78.2 kB]
200s Get:165 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-cookies-perl all 6.11-1 [18.2 kB]
200s Get:166 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-negotiate-perl all 6.01-2 [12.4 kB]
200s Get:167 http://ftpmaster.internal/ubuntu oracular/main armhf perl-openssl-defaults armhf 7build3 [6628 B]
200s Get:168 http://ftpmaster.internal/ubuntu oracular/main armhf libnet-ssleay-perl armhf 1.94-1build4 [298 kB]
200s Get:169 http://ftpmaster.internal/ubuntu oracular/main armhf libio-socket-ssl-perl all 2.085-1 [195 kB]
200s Get:170 http://ftpmaster.internal/ubuntu oracular/main armhf libnet-http-perl all 6.23-1 [22.3 kB]
200s Get:171 http://ftpmaster.internal/ubuntu oracular/main armhf liblwp-protocol-https-perl all 6.14-1 [9040 B]
200s Get:172 http://ftpmaster.internal/ubuntu oracular/main armhf libtry-tiny-perl all 0.31-2 [20.8 kB]
200s Get:173 http://ftpmaster.internal/ubuntu oracular/main armhf libwww-robotrules-perl all 6.02-1 [12.6 kB]
200s Get:174 http://ftpmaster.internal/ubuntu oracular/main armhf libwww-perl all 6.77-1 [138 kB]
200s Get:175 http://ftpmaster.internal/ubuntu oracular/main armhf libapache2-mod-perl2 armhf 2.0.13-1build5 [757 kB]
200s Get:176 http://ftpmaster.internal/ubuntu oracular/main armhf libdbi-perl armhf 1.643-4build3 [714 kB]
200s Get:177 http://ftpmaster.internal/ubuntu oracular/universe armhf libapache-dbi-perl all 1.12-3 [40.5 kB]
200s Get:178 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-db-biofetch-perl all 1.7.3-4 [17.1 kB]
200s Get:179 http://ftpmaster.internal/ubuntu oracular/main armhf libcgi-pm-perl all 4.66-1 [185 kB]
200s Get:180 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-db-gff-perl all 1.7.4-1 [273 kB]
200s Get:181 http://ftpmaster.internal/ubuntu oracular/main armhf libpq5 armhf 16.3-1 [122 kB]
200s Get:182 http://ftpmaster.internal/ubuntu oracular/universe armhf libdbd-pg-perl armhf 3.18.0-1build3 [189 kB]
200s Get:183 http://ftpmaster.internal/ubuntu oracular/universe armhf libdbd-sqlite3-perl armhf 1.74-1build3 [155 kB]
200s Get:184 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-db-seqfeature-perl all 1.7.4-2 [169 kB]
200s Get:185 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-graphics-perl all 2.40-6 [601 kB]
200s Get:186 http://ftpmaster.internal/ubuntu oracular/universe armhf libbio-coordinate-perl all 1.7.1-4 [56.4 kB]
200s Get:187 http://ftpmaster.internal/ubuntu oracular/universe armhf libcgi-session-perl all 4.48-4 [108 kB]
200s Get:188 http://ftpmaster.internal/ubuntu oracular/main armhf libjson-perl all 4.10000-1 [81.9 kB]
200s Get:189 http://ftpmaster.internal/ubuntu oracular/main armhf libexporter-tiny-perl all 1.006002-1 [36.8 kB]
200s Get:190 http://ftpmaster.internal/ubuntu oracular/universe armhf liblist-moreutils-xs-perl armhf 0.430-4 [38.0 kB]
200s Get:191 http://ftpmaster.internal/ubuntu oracular/universe armhf liblist-moreutils-perl all 0.430-2 [38.2 kB]
200s Get:192 http://ftpmaster.internal/ubuntu oracular/universe armhf libstatistics-descriptive-perl all 3.0801-1 [58.7 kB]
201s Get:193 http://ftpmaster.internal/ubuntu oracular/main armhf libhttp-daemon-perl all 6.16-1 [22.4 kB]
201s Get:194 http://ftpmaster.internal/ubuntu oracular/main armhf libterm-readkey-perl armhf 2.38-2build4 [22.5 kB]
201s Get:195 http://ftpmaster.internal/ubuntu oracular/main armhf sqlite3 armhf 3.46.0-1 [141 kB]
201s Get:196 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-prototype all 1.7.3-1 [44.8 kB]
201s Get:197 http://ftpmaster.internal/ubuntu oracular/universe armhf libjs-scriptaculous all 1.9.0-3 [92.6 kB]
201s Get:198 http://ftpmaster.internal/ubuntu oracular/universe armhf libanyevent-perl armhf 7.170-2build6 [368 kB]
201s Get:199 http://ftpmaster.internal/ubuntu oracular/universe armhf libanyevent-cachedns-perl all 0.08-3 [7216 B]
201s Get:200 http://ftpmaster.internal/ubuntu oracular/main armhf libcommon-sense-perl armhf 3.75-3build3 [20.4 kB]
201s Get:201 http://ftpmaster.internal/ubuntu oracular/universe armhf libanyevent-http-perl all 2.25-2 [30.3 kB]
201s Get:202 http://ftpmaster.internal/ubuntu oracular/universe armhf libstring-approx-perl armhf 3.28-2build4 [32.6 kB]
201s Get:203 http://ftpmaster.internal/ubuntu oracular/main armhf libxml-namespacesupport-perl all 1.12-2 [13.5 kB]
201s Get:204 http://ftpmaster.internal/ubuntu oracular/main armhf libxml-sax-base-perl all 1.09-3 [18.9 kB]
201s Get:205 http://ftpmaster.internal/ubuntu oracular/main armhf libxml-sax-perl all 1.02+dfsg-3 [57.0 kB]
201s Get:206 http://ftpmaster.internal/ubuntu oracular/main armhf libxml-libxml-perl armhf 2.0207+dfsg+really+2.0134-2 [291 kB]
201s Get:207 http://ftpmaster.internal/ubuntu oracular/main armhf libxml-simple-perl all 2.25-2 [64.1 kB]
201s Get:208 http://ftpmaster.internal/ubuntu oracular/universe armhf libvm-ec2-perl all 1.28-4 [766 kB]
201s Get:209 http://ftpmaster.internal/ubuntu oracular/universe armhf gbrowse all 2.56+dfsg-12build3 [2181 kB]
201s Get:210 http://ftpmaster.internal/ubuntu oracular/universe armhf gff2aplot armhf 2.0-15 [257 kB]
201s Get:211 http://ftpmaster.internal/ubuntu oracular/universe armhf gff2ps all 0.98l-6 [63.1 kB]
201s Get:212 http://ftpmaster.internal/ubuntu oracular/universe armhf libgclib3t64 armhf 0.12.7+ds-5ubuntu3 [136 kB]
201s Get:213 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf gffread armhf 0.12.7-6 [58.2 kB]
201s Get:214 http://ftpmaster.internal/ubuntu oracular/universe armhf htslib-test all 1.20+ds-1 [1145 kB]
201s Get:215 http://ftpmaster.internal/ubuntu oracular/universe armhf liblua5.1-0 armhf 5.1.5-9build2 [91.9 kB]
201s Get:216 http://ftpmaster.internal/ubuntu oracular/universe armhf libtre5 armhf 0.8.0-7 [43.5 kB]
201s Get:217 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-argcomplete all 3.4.0-1 [34.6 kB]
201s Get:218 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-argh all 0.31.2-1 [26.9 kB]
201s Get:219 http://ftpmaster.internal/ubuntu oracular/main armhf python3-simplejson armhf 3.19.2-1build2 [52.0 kB]
202s Get:220 http://ftpmaster.internal/ubuntu oracular/universe armhf python3-gffutils all 0.13-1 [1081 kB]
202s Get:221 http://ftpmaster.internal/ubuntu oracular/universe armhf genometools-common all 1.6.5+ds-2.2 [194 kB]
202s Preconfiguring packages ...
202s Fetched 281 MB in 13s (22.1 MB/s)
202s Selecting previously unselected package libapr1t64:armhf.
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202s Preparing to unpack .../000-libapr1t64_1.7.2-3.2_armhf.deb ...
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202s Selecting previously unselected package libaprutil1t64:armhf.
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202s Selecting previously unselected package libaprutil1-dbd-sqlite3:armhf.
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207s Selecting previously unselected package libraqm0:armhf.
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207s Selecting previously unselected package libdeflate0:armhf.
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207s Selecting previously unselected package libsharpyuv0:armhf.
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207s Selecting previously unselected package libwebp7:armhf.
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207s Selecting previously unselected package libtiff6:armhf.
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207s Selecting previously unselected package python3-pil:armhf.
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207s Selecting previously unselected package libxcb-render0:armhf.
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209s Selecting previously unselected package python3-ufolib2.
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209s Selecting previously unselected package python3-fs.
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209s Selecting previously unselected package libxslt1.1:armhf.
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210s Selecting previously unselected package python3-unicodedata2.
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210s Selecting previously unselected package python3-fonttools.
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210s Selecting previously unselected package python3-kiwisolver.
210s Preparing to unpack .../103-python3-kiwisolver_1.4.5-1_armhf.deb ...
210s Unpacking python3-kiwisolver (1.4.5-1) ...
210s Selecting previously unselected package python3-packaging.
210s Preparing to unpack .../104-python3-packaging_24.0-1_all.deb ...
210s Unpacking python3-packaging (24.0-1) ...
210s Selecting previously unselected package libqhull-r8.0:armhf.
210s Preparing to unpack .../105-libqhull-r8.0_2020.2-6build1_armhf.deb ...
210s Unpacking libqhull-r8.0:armhf (2020.2-6build1) ...
210s Selecting previously unselected package python3-matplotlib.
210s Preparing to unpack .../106-python3-matplotlib_3.6.3-2ubuntu1_armhf.deb ...
210s Unpacking python3-matplotlib (3.6.3-2ubuntu1) ...
211s Selecting previously unselected package python3-pandas-lib:armhf.
211s Preparing to unpack .../107-python3-pandas-lib_2.1.4+dfsg-8_armhf.deb ...
211s Unpacking python3-pandas-lib:armhf (2.1.4+dfsg-8) ...
211s Selecting previously unselected package python3-pandas.
211s Preparing to unpack .../108-python3-pandas_2.1.4+dfsg-8_all.deb ...
211s Unpacking python3-pandas (2.1.4+dfsg-8) ...
211s Selecting previously unselected package python3-joblib.
211s Preparing to unpack .../109-python3-joblib_1.3.2-2_all.deb ...
211s Unpacking python3-joblib (1.3.2-2) ...
211s Selecting previously unselected package python3-networkx.
211s Preparing to unpack .../110-python3-networkx_3.2.1-4ubuntu1_all.deb ...
211s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
212s Selecting previously unselected package python3-pomegranate.
212s Preparing to unpack .../111-python3-pomegranate_0.14.8-6_armhf.deb ...
212s Unpacking python3-pomegranate (0.14.8-6) ...
212s Selecting previously unselected package python3-zipp.
212s Preparing to unpack .../112-python3-zipp_3.19.2-2_all.deb ...
212s Unpacking python3-zipp (3.19.2-2) ...
212s Selecting previously unselected package python3-importlib-metadata.
212s Preparing to unpack .../113-python3-importlib-metadata_8.0.0-2_all.deb ...
212s Unpacking python3-importlib-metadata (8.0.0-2) ...
212s Selecting previously unselected package python3-pyfaidx.
212s Preparing to unpack .../114-python3-pyfaidx_0.8.1.1-2_all.deb ...
212s Unpacking python3-pyfaidx (0.8.1.1-2) ...
212s Selecting previously unselected package libhtscodecs2:armhf.
212s Preparing to unpack .../115-libhtscodecs2_1.6.0-1build1_armhf.deb ...
212s Unpacking libhtscodecs2:armhf (1.6.0-1build1) ...
212s Selecting previously unselected package libhts3t64:armhf.
212s Preparing to unpack .../116-libhts3t64_1.20+ds-1_armhf.deb ...
212s Unpacking libhts3t64:armhf (1.20+ds-1) ...
212s Selecting previously unselected package python3-pysam.
212s Preparing to unpack .../117-python3-pysam_0.22.1+ds-2_armhf.deb ...
212s Unpacking python3-pysam (0.22.1+ds-2) ...
213s Selecting previously unselected package python3-threadpoolctl.
213s Preparing to unpack .../118-python3-threadpoolctl_3.1.0-1_all.deb ...
213s Unpacking python3-threadpoolctl (3.1.0-1) ...
213s Selecting previously unselected package python3-sklearn-lib:armhf.
213s Preparing to unpack .../119-python3-sklearn-lib_1.4.2+dfsg-3_armhf.deb ...
213s Unpacking python3-sklearn-lib:armhf (1.4.2+dfsg-3) ...
213s Selecting previously unselected package python3-sklearn.
213s Preparing to unpack .../120-python3-sklearn_1.4.2+dfsg-3_all.deb ...
213s Unpacking python3-sklearn (1.4.2+dfsg-3) ...
213s Selecting previously unselected package zip.
213s Preparing to unpack .../121-zip_3.0-13build1_armhf.deb ...
213s Unpacking zip (3.0-13build1) ...
213s Selecting previously unselected package unzip.
213s Preparing to unpack .../122-unzip_6.0-28ubuntu5_armhf.deb ...
213s Unpacking unzip (6.0-28ubuntu5) ...
213s Selecting previously unselected package libpaper1:armhf.
213s Preparing to unpack .../123-libpaper1_1.1.29build1_armhf.deb ...
213s Unpacking libpaper1:armhf (1.1.29build1) ...
213s Selecting previously unselected package libpaper-utils.
213s Preparing to unpack .../124-libpaper-utils_1.1.29build1_armhf.deb ...
213s Unpacking libpaper-utils (1.1.29build1) ...
213s Selecting previously unselected package xdg-utils.
213s Preparing to unpack .../125-xdg-utils_1.2.1-0ubuntu1_all.deb ...
213s Unpacking xdg-utils (1.2.1-0ubuntu1) ...
213s Selecting previously unselected package fontconfig.
213s Preparing to unpack .../126-fontconfig_2.15.0-1.1ubuntu2_armhf.deb ...
213s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
213s Selecting previously unselected package libthai-data.
213s Preparing to unpack .../127-libthai-data_0.1.29-2build1_all.deb ...
213s Unpacking libthai-data (0.1.29-2build1) ...
213s Selecting previously unselected package libdatrie1:armhf.
213s Preparing to unpack .../128-libdatrie1_0.2.13-3build1_armhf.deb ...
213s Unpacking libdatrie1:armhf (0.2.13-3build1) ...
213s Selecting previously unselected package libthai0:armhf.
213s Preparing to unpack .../129-libthai0_0.1.29-2build1_armhf.deb ...
213s Unpacking libthai0:armhf (0.1.29-2build1) ...
214s Selecting previously unselected package libpango-1.0-0:armhf.
214s Preparing to unpack .../130-libpango-1.0-0_1.54.0+ds-1_armhf.deb ...
214s Unpacking libpango-1.0-0:armhf (1.54.0+ds-1) ...
214s Selecting previously unselected package libpangoft2-1.0-0:armhf.
214s Preparing to unpack .../131-libpangoft2-1.0-0_1.54.0+ds-1_armhf.deb ...
214s Unpacking libpangoft2-1.0-0:armhf (1.54.0+ds-1) ...
214s Selecting previously unselected package libpangocairo-1.0-0:armhf.
214s Preparing to unpack .../132-libpangocairo-1.0-0_1.54.0+ds-1_armhf.deb ...
214s Unpacking libpangocairo-1.0-0:armhf (1.54.0+ds-1) ...
214s Selecting previously unselected package libice6:armhf.
214s Preparing to unpack .../133-libice6_2%3a1.0.10-1build3_armhf.deb ...
214s Unpacking libice6:armhf (2:1.0.10-1build3) ...
214s Selecting previously unselected package libsm6:armhf.
214s Preparing to unpack .../134-libsm6_2%3a1.2.3-1build3_armhf.deb ...
214s Unpacking libsm6:armhf (2:1.2.3-1build3) ...
214s Selecting previously unselected package libxt6t64:armhf.
214s Preparing to unpack .../135-libxt6t64_1%3a1.2.1-1.2build1_armhf.deb ...
214s Unpacking libxt6t64:armhf (1:1.2.1-1.2build1) ...
214s Selecting previously unselected package r-base-core.
214s Preparing to unpack .../136-r-base-core_4.4.1-1_armhf.deb ...
214s Unpacking r-base-core (4.4.1-1) ...
214s Selecting previously unselected package r-bioc-biocgenerics.
214s Preparing to unpack .../137-r-bioc-biocgenerics_0.48.1-2_all.deb ...
214s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
215s Selecting previously unselected package r-bioc-dnacopy.
215s Preparing to unpack .../138-r-bioc-dnacopy_1.76.0-1_armhf.deb ...
215s Unpacking r-bioc-dnacopy (1.76.0-1) ...
215s Selecting previously unselected package cnvkit.
215s Preparing to unpack .../139-cnvkit_0.9.10-2_all.deb ...
215s Unpacking cnvkit (0.9.10-2) ...
215s Selecting previously unselected package emboss-data.
215s Preparing to unpack .../140-emboss-data_6.6.0+dfsg-12ubuntu2_all.deb ...
215s Unpacking emboss-data (6.6.0+dfsg-12ubuntu2) ...
217s Selecting previously unselected package emboss-test.
217s Preparing to unpack .../141-emboss-test_6.6.0+dfsg-12ubuntu2_all.deb ...
217s Unpacking emboss-test (6.6.0+dfsg-12ubuntu2) ...
217s Selecting previously unselected package libaom3:armhf.
217s Preparing to unpack .../142-libaom3_3.9.1-1_armhf.deb ...
217s Unpacking libaom3:armhf (3.9.1-1) ...
218s Selecting previously unselected package libheif-plugin-aomdec:armhf.
218s Preparing to unpack .../143-libheif-plugin-aomdec_1.17.6-3build1_armhf.deb ...
218s Unpacking libheif-plugin-aomdec:armhf (1.17.6-3build1) ...
218s Selecting previously unselected package libde265-0:armhf.
218s Preparing to unpack .../144-libde265-0_1.0.15-1build3_armhf.deb ...
218s Unpacking libde265-0:armhf (1.0.15-1build3) ...
218s Selecting previously unselected package libheif-plugin-libde265:armhf.
218s Preparing to unpack .../145-libheif-plugin-libde265_1.17.6-3build1_armhf.deb ...
218s Unpacking libheif-plugin-libde265:armhf (1.17.6-3build1) ...
218s Selecting previously unselected package libheif1:armhf.
218s Preparing to unpack .../146-libheif1_1.17.6-3build1_armhf.deb ...
218s Unpacking libheif1:armhf (1.17.6-3build1) ...
218s Selecting previously unselected package libxpm4:armhf.
218s Preparing to unpack .../147-libxpm4_1%3a3.5.17-1build2_armhf.deb ...
218s Unpacking libxpm4:armhf (1:3.5.17-1build2) ...
218s Selecting previously unselected package libgd3:armhf.
218s Preparing to unpack .../148-libgd3_2.3.3-9ubuntu5_armhf.deb ...
218s Unpacking libgd3:armhf (2.3.3-9ubuntu5) ...
218s Selecting previously unselected package libgd-perl.
218s Preparing to unpack .../149-libgd-perl_2.78-1build3_armhf.deb ...
218s Unpacking libgd-perl (2.78-1build3) ...
218s Selecting previously unselected package libdevel-symdump-perl.
218s Preparing to unpack .../150-libdevel-symdump-perl_2.18-5_all.deb ...
218s Unpacking libdevel-symdump-perl (2.18-5) ...
218s Selecting previously unselected package liburi-perl.
218s Preparing to unpack .../151-liburi-perl_5.28-1_all.deb ...
218s Unpacking liburi-perl (5.28-1) ...
218s Selecting previously unselected package libencode-locale-perl.
218s Preparing to unpack .../152-libencode-locale-perl_1.05-3_all.deb ...
218s Unpacking libencode-locale-perl (1.05-3) ...
218s Selecting previously unselected package libtimedate-perl.
218s Preparing to unpack .../153-libtimedate-perl_2.3300-2_all.deb ...
218s Unpacking libtimedate-perl (2.3300-2) ...
218s Selecting previously unselected package libhttp-date-perl.
218s Preparing to unpack .../154-libhttp-date-perl_6.06-1_all.deb ...
218s Unpacking libhttp-date-perl (6.06-1) ...
218s Selecting previously unselected package libfile-listing-perl.
218s Preparing to unpack .../155-libfile-listing-perl_6.16-1_all.deb ...
218s Unpacking libfile-listing-perl (6.16-1) ...
218s Selecting previously unselected package libhtml-tagset-perl.
218s Preparing to unpack .../156-libhtml-tagset-perl_3.24-1_all.deb ...
218s Unpacking libhtml-tagset-perl (3.24-1) ...
218s Selecting previously unselected package libhtml-parser-perl:armhf.
218s Preparing to unpack .../157-libhtml-parser-perl_3.82-1_armhf.deb ...
218s Unpacking libhtml-parser-perl:armhf (3.82-1) ...
218s Selecting previously unselected package libhtml-tree-perl.
218s Preparing to unpack .../158-libhtml-tree-perl_5.07-3_all.deb ...
218s Unpacking libhtml-tree-perl (5.07-3) ...
218s Selecting previously unselected package libclone-perl:armhf.
218s Preparing to unpack .../159-libclone-perl_0.46-1build3_armhf.deb ...
218s Unpacking libclone-perl:armhf (0.46-1build3) ...
218s Selecting previously unselected package libio-html-perl.
218s Preparing to unpack .../160-libio-html-perl_1.004-3_all.deb ...
218s Unpacking libio-html-perl (1.004-3) ...
218s Selecting previously unselected package liblwp-mediatypes-perl.
218s Preparing to unpack .../161-liblwp-mediatypes-perl_6.04-2_all.deb ...
218s Unpacking liblwp-mediatypes-perl (6.04-2) ...
218s Selecting previously unselected package libhttp-message-perl.
218s Preparing to unpack .../162-libhttp-message-perl_6.45-1ubuntu1_all.deb ...
218s Unpacking libhttp-message-perl (6.45-1ubuntu1) ...
218s Selecting previously unselected package libhttp-cookies-perl.
218s Preparing to unpack .../163-libhttp-cookies-perl_6.11-1_all.deb ...
218s Unpacking libhttp-cookies-perl (6.11-1) ...
218s Selecting previously unselected package libhttp-negotiate-perl.
218s Preparing to unpack .../164-libhttp-negotiate-perl_6.01-2_all.deb ...
218s Unpacking libhttp-negotiate-perl (6.01-2) ...
219s Selecting previously unselected package perl-openssl-defaults:armhf.
219s Preparing to unpack .../165-perl-openssl-defaults_7build3_armhf.deb ...
219s Unpacking perl-openssl-defaults:armhf (7build3) ...
219s Selecting previously unselected package libnet-ssleay-perl:armhf.
219s Preparing to unpack .../166-libnet-ssleay-perl_1.94-1build4_armhf.deb ...
219s Unpacking libnet-ssleay-perl:armhf (1.94-1build4) ...
219s Selecting previously unselected package libio-socket-ssl-perl.
219s Preparing to unpack .../167-libio-socket-ssl-perl_2.085-1_all.deb ...
219s Unpacking libio-socket-ssl-perl (2.085-1) ...
219s Selecting previously unselected package libnet-http-perl.
219s Preparing to unpack .../168-libnet-http-perl_6.23-1_all.deb ...
219s Unpacking libnet-http-perl (6.23-1) ...
219s Selecting previously unselected package liblwp-protocol-https-perl.
219s Preparing to unpack .../169-liblwp-protocol-https-perl_6.14-1_all.deb ...
219s Unpacking liblwp-protocol-https-perl (6.14-1) ...
219s Selecting previously unselected package libtry-tiny-perl.
219s Preparing to unpack .../170-libtry-tiny-perl_0.31-2_all.deb ...
219s Unpacking libtry-tiny-perl (0.31-2) ...
219s Selecting previously unselected package libwww-robotrules-perl.
219s Preparing to unpack .../171-libwww-robotrules-perl_6.02-1_all.deb ...
219s Unpacking libwww-robotrules-perl (6.02-1) ...
219s Selecting previously unselected package libwww-perl.
219s Preparing to unpack .../172-libwww-perl_6.77-1_all.deb ...
219s Unpacking libwww-perl (6.77-1) ...
219s Selecting previously unselected package libapache2-mod-perl2.
219s Preparing to unpack .../173-libapache2-mod-perl2_2.0.13-1build5_armhf.deb ...
219s Unpacking libapache2-mod-perl2 (2.0.13-1build5) ...
219s Selecting previously unselected package libdbi-perl:armhf.
219s Preparing to unpack .../174-libdbi-perl_1.643-4build3_armhf.deb ...
219s Unpacking libdbi-perl:armhf (1.643-4build3) ...
219s Selecting previously unselected package libapache-dbi-perl.
219s Preparing to unpack .../175-libapache-dbi-perl_1.12-3_all.deb ...
219s Unpacking libapache-dbi-perl (1.12-3) ...
219s Selecting previously unselected package libbio-db-biofetch-perl.
219s Preparing to unpack .../176-libbio-db-biofetch-perl_1.7.3-4_all.deb ...
219s Unpacking libbio-db-biofetch-perl (1.7.3-4) ...
219s Selecting previously unselected package libcgi-pm-perl.
219s Preparing to unpack .../177-libcgi-pm-perl_4.66-1_all.deb ...
219s Unpacking libcgi-pm-perl (4.66-1) ...
219s Selecting previously unselected package libbio-db-gff-perl.
219s Preparing to unpack .../178-libbio-db-gff-perl_1.7.4-1_all.deb ...
219s Unpacking libbio-db-gff-perl (1.7.4-1) ...
219s Selecting previously unselected package libpq5:armhf.
219s Preparing to unpack .../179-libpq5_16.3-1_armhf.deb ...
219s Unpacking libpq5:armhf (16.3-1) ...
219s Selecting previously unselected package libdbd-pg-perl.
219s Preparing to unpack .../180-libdbd-pg-perl_3.18.0-1build3_armhf.deb ...
219s Unpacking libdbd-pg-perl (3.18.0-1build3) ...
219s Selecting previously unselected package libdbd-sqlite3-perl:armhf.
219s Preparing to unpack .../181-libdbd-sqlite3-perl_1.74-1build3_armhf.deb ...
219s Unpacking libdbd-sqlite3-perl:armhf (1.74-1build3) ...
219s Selecting previously unselected package libbio-db-seqfeature-perl.
219s Preparing to unpack .../182-libbio-db-seqfeature-perl_1.7.4-2_all.deb ...
219s Unpacking libbio-db-seqfeature-perl (1.7.4-2) ...
219s Selecting previously unselected package libbio-graphics-perl.
219s Preparing to unpack .../183-libbio-graphics-perl_2.40-6_all.deb ...
219s Unpacking libbio-graphics-perl (2.40-6) ...
219s Selecting previously unselected package libbio-coordinate-perl.
220s Preparing to unpack .../184-libbio-coordinate-perl_1.7.1-4_all.deb ...
220s Unpacking libbio-coordinate-perl (1.7.1-4) ...
220s Selecting previously unselected package libcgi-session-perl.
220s Preparing to unpack .../185-libcgi-session-perl_4.48-4_all.deb ...
220s Unpacking libcgi-session-perl (4.48-4) ...
220s Selecting previously unselected package libjson-perl.
220s Preparing to unpack .../186-libjson-perl_4.10000-1_all.deb ...
220s Unpacking libjson-perl (4.10000-1) ...
220s Selecting previously unselected package libexporter-tiny-perl.
220s Preparing to unpack .../187-libexporter-tiny-perl_1.006002-1_all.deb ...
220s Unpacking libexporter-tiny-perl (1.006002-1) ...
220s Selecting previously unselected package liblist-moreutils-xs-perl.
220s Preparing to unpack .../188-liblist-moreutils-xs-perl_0.430-4_armhf.deb ...
220s Unpacking liblist-moreutils-xs-perl (0.430-4) ...
220s Selecting previously unselected package liblist-moreutils-perl.
220s Preparing to unpack .../189-liblist-moreutils-perl_0.430-2_all.deb ...
220s Unpacking liblist-moreutils-perl (0.430-2) ...
220s Selecting previously unselected package libstatistics-descriptive-perl.
220s Preparing to unpack .../190-libstatistics-descriptive-perl_3.0801-1_all.deb ...
220s Unpacking libstatistics-descriptive-perl (3.0801-1) ...
220s Selecting previously unselected package libhttp-daemon-perl.
220s Preparing to unpack .../191-libhttp-daemon-perl_6.16-1_all.deb ...
220s Unpacking libhttp-daemon-perl (6.16-1) ...
220s Selecting previously unselected package libterm-readkey-perl.
220s Preparing to unpack .../192-libterm-readkey-perl_2.38-2build4_armhf.deb ...
220s Unpacking libterm-readkey-perl (2.38-2build4) ...
220s Selecting previously unselected package sqlite3.
220s Preparing to unpack .../193-sqlite3_3.46.0-1_armhf.deb ...
220s Unpacking sqlite3 (3.46.0-1) ...
220s Selecting previously unselected package libjs-prototype.
220s Preparing to unpack .../194-libjs-prototype_1.7.3-1_all.deb ...
220s Unpacking libjs-prototype (1.7.3-1) ...
220s Selecting previously unselected package libjs-scriptaculous.
220s Preparing to unpack .../195-libjs-scriptaculous_1.9.0-3_all.deb ...
220s Unpacking libjs-scriptaculous (1.9.0-3) ...
220s Selecting previously unselected package libanyevent-perl.
220s Preparing to unpack .../196-libanyevent-perl_7.170-2build6_armhf.deb ...
220s Unpacking libanyevent-perl (7.170-2build6) ...
220s Selecting previously unselected package libanyevent-cachedns-perl.
220s Preparing to unpack .../197-libanyevent-cachedns-perl_0.08-3_all.deb ...
220s Unpacking libanyevent-cachedns-perl (0.08-3) ...
220s Selecting previously unselected package libcommon-sense-perl:armhf.
220s Preparing to unpack .../198-libcommon-sense-perl_3.75-3build3_armhf.deb ...
220s Unpacking libcommon-sense-perl:armhf (3.75-3build3) ...
220s Selecting previously unselected package libanyevent-http-perl.
220s Preparing to unpack .../199-libanyevent-http-perl_2.25-2_all.deb ...
220s Unpacking libanyevent-http-perl (2.25-2) ...
220s Selecting previously unselected package libstring-approx-perl.
220s Preparing to unpack .../200-libstring-approx-perl_3.28-2build4_armhf.deb ...
220s Unpacking libstring-approx-perl (3.28-2build4) ...
220s Selecting previously unselected package libxml-namespacesupport-perl.
220s Preparing to unpack .../201-libxml-namespacesupport-perl_1.12-2_all.deb ...
220s Unpacking libxml-namespacesupport-perl (1.12-2) ...
220s Selecting previously unselected package libxml-sax-base-perl.
220s Preparing to unpack .../202-libxml-sax-base-perl_1.09-3_all.deb ...
220s Unpacking libxml-sax-base-perl (1.09-3) ...
220s Selecting previously unselected package libxml-sax-perl.
220s Preparing to unpack .../203-libxml-sax-perl_1.02+dfsg-3_all.deb ...
220s Unpacking libxml-sax-perl (1.02+dfsg-3) ...
220s Selecting previously unselected package libxml-libxml-perl.
220s Preparing to unpack .../204-libxml-libxml-perl_2.0207+dfsg+really+2.0134-2_armhf.deb ...
220s Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ...
220s Selecting previously unselected package libxml-simple-perl.
221s Preparing to unpack .../205-libxml-simple-perl_2.25-2_all.deb ...
221s Unpacking libxml-simple-perl (2.25-2) ...
221s Selecting previously unselected package libvm-ec2-perl.
221s Preparing to unpack .../206-libvm-ec2-perl_1.28-4_all.deb ...
221s Unpacking libvm-ec2-perl (1.28-4) ...
221s Selecting previously unselected package gbrowse.
221s Preparing to unpack .../207-gbrowse_2.56+dfsg-12build3_all.deb ...
221s Unpacking gbrowse (2.56+dfsg-12build3) ...
221s Selecting previously unselected package gff2aplot.
221s Preparing to unpack .../208-gff2aplot_2.0-15_armhf.deb ...
221s Unpacking gff2aplot (2.0-15) ...
221s Selecting previously unselected package gff2ps.
221s Preparing to unpack .../209-gff2ps_0.98l-6_all.deb ...
221s Unpacking gff2ps (0.98l-6) ...
221s Selecting previously unselected package libgclib3t64:armhf.
221s Preparing to unpack .../210-libgclib3t64_0.12.7+ds-5ubuntu3_armhf.deb ...
221s Unpacking libgclib3t64:armhf (0.12.7+ds-5ubuntu3) ...
221s Selecting previously unselected package gffread.
221s Preparing to unpack .../211-gffread_0.12.7-6_armhf.deb ...
221s Unpacking gffread (0.12.7-6) ...
221s Selecting previously unselected package htslib-test.
221s Preparing to unpack .../212-htslib-test_1.20+ds-1_all.deb ...
221s Unpacking htslib-test (1.20+ds-1) ...
221s Selecting previously unselected package liblua5.1-0:armhf.
221s Preparing to unpack .../213-liblua5.1-0_5.1.5-9build2_armhf.deb ...
221s Unpacking liblua5.1-0:armhf (5.1.5-9build2) ...
221s Selecting previously unselected package libtre5:armhf.
221s Preparing to unpack .../214-libtre5_0.8.0-7_armhf.deb ...
221s Unpacking libtre5:armhf (0.8.0-7) ...
221s Selecting previously unselected package python3-argcomplete.
221s Preparing to unpack .../215-python3-argcomplete_3.4.0-1_all.deb ...
221s Unpacking python3-argcomplete (3.4.0-1) ...
221s Selecting previously unselected package python3-argh.
221s Preparing to unpack .../216-python3-argh_0.31.2-1_all.deb ...
221s Unpacking python3-argh (0.31.2-1) ...
221s Selecting previously unselected package python3-simplejson.
221s Preparing to unpack .../217-python3-simplejson_3.19.2-1build2_armhf.deb ...
221s Unpacking python3-simplejson (3.19.2-1build2) ...
221s Selecting previously unselected package python3-gffutils.
221s Preparing to unpack .../218-python3-gffutils_0.13-1_all.deb ...
221s Unpacking python3-gffutils (0.13-1) ...
221s Selecting previously unselected package genometools-common.
221s Preparing to unpack .../219-genometools-common_1.6.5+ds-2.2_all.deb ...
221s Unpacking genometools-common (1.6.5+ds-2.2) ...
221s Selecting previously unselected package autopkgtest-satdep.
221s Preparing to unpack .../220-1-autopkgtest-satdep.deb ...
221s Unpacking autopkgtest-satdep (0) ...
222s Setting up libhtscodecs2:armhf (1.6.0-1build1) ...
222s Setting up libgclib3t64:armhf (0.12.7+ds-5ubuntu3) ...
222s Setting up libanyevent-perl (7.170-2build6) ...
222s Setting up libgraphite2-3:armhf (1.3.14-2ubuntu1) ...
222s Setting up liblcms2-2:armhf (2.14-2build1) ...
222s Setting up libpixman-1-0:armhf (0.42.2-1build1) ...
222s Setting up libstring-approx-perl (3.28-2build4) ...
222s Setting up python3-argh (0.31.2-1) ...
222s Setting up libsharpyuv0:armhf (1.4.0-0.1) ...
222s Setting up libpaper1:armhf (1.1.29build1) ...
222s 
222s Creating config file /etc/papersize with new version
222s Setting up libaom3:armhf (3.9.1-1) ...
222s Setting up gff2ps (0.98l-6) ...
222s Setting up gffread (0.12.7-6) ...
222s Setting up libtre5:armhf (0.8.0-7) ...
222s Setting up liblerc4:armhf (4.0.0+ds-4ubuntu2) ...
222s Setting up libxpm4:armhf (1:3.5.17-1build2) ...
222s Setting up libxrender1:armhf (1:0.9.10-1.1build1) ...
222s Setting up libdatrie1:armhf (0.2.13-3build1) ...
222s Setting up libtest-deep-perl (1.204-1) ...
222s Setting up python3-joblib (1.3.2-2) ...
222s Setting up python3-lz4 (4.0.2+dfsg-1build4) ...
222s Setting up libxcb-render0:armhf (1.17.0-2) ...
222s Setting up libclone-perl:armhf (0.46-1build3) ...
222s Setting up libalgorithm-diff-perl (1.201-1) ...
222s Setting up htslib-test (1.20+ds-1) ...
222s Setting up python3-unicodedata2 (15.1.0+ds-1build1) ...
222s Setting up fonts-lyx (2.4.1-1) ...
222s Setting up libhtml-tagset-perl (3.24-1) ...
222s Setting up unzip (6.0-28ubuntu5) ...
222s Setting up liblwp-mediatypes-perl (6.04-2) ...
222s Setting up python3-threadpoolctl (3.1.0-1) ...
223s Setting up x11-common (1:7.7+23ubuntu3) ...
223s Setting up libtry-tiny-perl (0.31-2) ...
223s Setting up libpq5:armhf (16.3-1) ...
223s Setting up libdeflate0:armhf (1.20-1) ...
223s Setting up perl-openssl-defaults:armhf (7build3) ...
223s Setting up libcommon-sense-perl:armhf (3.75-3build3) ...
223s Setting up libxml-namespacesupport-perl (1.12-2) ...
223s Setting up libanyevent-http-perl (2.25-2) ...
223s Setting up libqhull-r8.0:armhf (2020.2-6build1) ...
223s Setting up libencode-locale-perl (1.05-3) ...
223s Setting up libxcb-shm0:armhf (1.17.0-2) ...
223s Setting up libpaper-utils (1.1.29build1) ...
223s Setting up python3-zipp (3.19.2-2) ...
223s Setting up libgomp1:armhf (14.1.0-1ubuntu1) ...
223s Setting up emboss-data (6.6.0+dfsg-12ubuntu2) ...
223s Setting up python3-networkx (3.2.1-4ubuntu1) ...
224s Setting up libjbig0:armhf (2.1-6.1ubuntu2) ...
224s Setting up python3-tz (2024.1-2) ...
225s Setting up augustus-doc (3.5.0+dfsg-4build5) ...
225s Setting up unicode-data (15.1.0-1) ...
225s Setting up python3-simplejson (3.19.2-1build2) ...
225s Setting up libxml-sax-base-perl (1.09-3) ...
225s Setting up libio-string-perl (1.08-4) ...
225s Setting up python3-decorator (5.1.1-5) ...
225s Setting up zip (3.0-13build1) ...
225s Setting up libfontenc1:armhf (1:1.1.8-1build1) ...
225s Setting up libblas3:armhf (3.12.0-3build1) ...
225s update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
225s Setting up libclass-data-inheritable-perl (0.08-3) ...
225s Setting up python3-packaging (24.0-1) ...
225s Setting up libfreetype6:armhf (2.13.2+dfsg-1build3) ...
225s Setting up libtext-diff-perl (1.45-2) ...
225s Setting up python3-brotli (1.1.0-2build2) ...
225s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
225s Setting up python3-cycler (0.12.1-1) ...
225s Setting up libanyevent-cachedns-perl (0.08-3) ...
225s Setting up libimagequant0:armhf (2.18.0-1build1) ...
225s Setting up fonts-dejavu-mono (2.37-8) ...
225s Setting up python3-kiwisolver (1.4.5-1) ...
225s Setting up libio-html-perl (1.004-3) ...
225s Setting up libtcl8.6:armhf (8.6.14+dfsg-1build1) ...
225s Setting up fonts-dejavu-core (2.37-8) ...
225s Setting up liblist-moreutils-xs-perl (0.430-4) ...
225s Setting up emboss-test (6.6.0+dfsg-12ubuntu2) ...
225s Setting up libjpeg-turbo8:armhf (2.1.5-2ubuntu2) ...
225s Setting up libjs-prototype (1.7.3-1) ...
225s Setting up libgfortran5:armhf (14.1.0-1ubuntu1) ...
225s Setting up libwebp7:armhf (1.4.0-0.1) ...
225s Setting up libcapture-tiny-perl (0.48-2) ...
226s Setting up libtimedate-perl (2.3300-2) ...
226s Setting up libdata-stag-perl (0.14-3) ...
226s Setting up libapr1t64:armhf (1.7.2-3.2) ...
226s Setting up libjson-perl (4.10000-1) ...
226s Setting up liblua5.1-0:armhf (5.1.5-9build2) ...
226s Setting up libxslt1.1:armhf (1.1.39-0exp1build1) ...
226s Setting up libhts3t64:armhf (1.20+ds-1) ...
226s Setting up libsub-uplevel-perl (0.2800-3) ...
226s Setting up liblua5.4-0:armhf (5.4.6-3build2) ...
226s Setting up libopenjp2-7:armhf (2.5.0-2build3) ...
226s Setting up libharfbuzz0b:armhf (8.3.0-2build2) ...
226s Setting up libthai-data (0.1.29-2build1) ...
226s Setting up python3-dateutil (2.9.0-2) ...
226s Setting up sgml-base (1.31) ...
226s Setting up libdevel-stacktrace-perl (2.0500-1) ...
226s Setting up apache2-data (2.4.59-2ubuntu2) ...
226s Setting up libdevel-symdump-perl (2.18-5) ...
226s Setting up libbio-perl-perl (1.7.8-1) ...
226s Setting up libxss1:armhf (1:1.2.3-1build3) ...
226s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
226s Setting up bedtools-test (2.31.1+dfsg-2) ...
226s Setting up libexporter-tiny-perl (1.006002-1) ...
226s Setting up libterm-readkey-perl (2.38-2build4) ...
226s Setting up python3-mpmath (1.3.0-1) ...
226s Setting up libde265-0:armhf (1.0.15-1build3) ...
226s Setting up python3-argcomplete (3.4.0-1) ...
226s Setting up python-matplotlib-data (3.6.3-2ubuntu1) ...
226s Setting up libwebpmux3:armhf (1.4.0-0.1) ...
226s Setting up gff2aplot (2.0-15) ...
226s Setting up python3-appdirs (1.4.4-4) ...
227s Setting up xdg-utils (1.2.1-0ubuntu1) ...
227s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
227s Setting up liburi-perl (5.28-1) ...
227s Setting up sqlite3 (3.46.0-1) ...
227s Setting up libdbi-perl:armhf (1.643-4build3) ...
227s Setting up libnet-ssleay-perl:armhf (1.94-1build4) ...
227s Setting up libjpeg8:armhf (8c-2ubuntu11) ...
227s Setting up python3-sympy (1.12-8) ...
233s Setting up libaprutil1t64:armhf (1.6.3-2ubuntu1) ...
233s Setting up libice6:armhf (2:1.0.10-1build3) ...
233s Setting up libhttp-date-perl (6.06-1) ...
233s Setting up liblapack3:armhf (3.12.0-3build1) ...
233s update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
233s Setting up python3-pysam (0.22.1+ds-2) ...
233s Setting up libfile-listing-perl (6.16-1) ...
233s Setting up python3-importlib-metadata (8.0.0-2) ...
233s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
234s Setting up libjs-scriptaculous (1.9.0-3) ...
234s Setting up liblist-moreutils-perl (0.430-2) ...
234s Setting up libtest-warn-perl (0.37-2) ...
234s Setting up libwebpdemux2:armhf (1.4.0-0.1) ...
234s Setting up libtest-differences-perl (0.71-1) ...
234s Setting up libnet-http-perl (6.23-1) ...
234s Setting up libdbd-pg-perl (3.18.0-1build3) ...
234s Setting up libexception-class-perl (1.45-1) ...
234s Setting up libaprutil1-ldap:armhf (1.6.3-2ubuntu1) ...
234s Setting up python3-freetype (2.4.0-2) ...
234s Setting up xfonts-utils (1:7.7+6build3) ...
234s Setting up libaprutil1-dbd-sqlite3:armhf (1.6.3-2ubuntu1) ...
234s Setting up libxml-sax-perl (1.02+dfsg-3) ...
234s update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
234s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
234s 
234s Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
234s Setting up python3-fs (2.4.16-4) ...
234s Setting up libthai0:armhf (0.1.29-2build1) ...
234s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
234s Setting up libtest-exception-perl (0.43-3) ...
234s Setting up libraqm0:armhf (0.10.1-1build1) ...
234s Setting up python3-numpy (1:1.26.4+ds-10) ...
236s Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-2) ...
236s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
236s update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
236s update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
237s Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
237s Setting up libwww-robotrules-perl (6.02-1) ...
237s Setting up python3-lxml:armhf (5.2.1-1) ...
237s Setting up libtiff6:armhf (4.5.1+git230720-4ubuntu3) ...
237s Setting up xml-core (0.19) ...
237s Setting up libhtml-parser-perl:armhf (3.82-1) ...
237s Setting up python3-contourpy (1.0.7-3) ...
237s Setting up libdbd-sqlite3-perl:armhf (1.74-1build3) ...
237s Setting up libfontconfig1:armhf (2.15.0-1.1ubuntu2) ...
237s Setting up libsm6:armhf (2:1.2.3-1build3) ...
237s Setting up libio-socket-ssl-perl (2.085-1) ...
237s Setting up liblbfgsb0:armhf (3.0+dfsg.4-1build1) ...
237s Setting up libhttp-message-perl (6.45-1ubuntu1) ...
237s Setting up apache2-utils (2.4.59-2ubuntu2) ...
237s Setting up python3-pyfaidx (0.8.1.1-2) ...
237s Setting up libhttp-negotiate-perl (6.01-2) ...
237s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
240s Regenerating fonts cache... done.
240s Setting up libxft2:armhf (2.3.6-1build1) ...
240s Setting up libstatistics-descriptive-perl (3.0801-1) ...
240s Setting up python3-scipy (1.12.0-2) ...
243s Setting up libhttp-cookies-perl (6.11-1) ...
243s Setting up libtest-most-perl (0.38-1) ...
243s Setting up libhtml-tree-perl (5.07-3) ...
243s Setting up python3-pomegranate (0.14.8-6) ...
243s Setting up libtk8.6:armhf (8.6.14-1build1) ...
243s Setting up python3-pandas-lib:armhf (2.1.4+dfsg-8) ...
243s Setting up libpango-1.0-0:armhf (1.54.0+ds-1) ...
243s Setting up libcgi-pm-perl (4.66-1) ...
243s Setting up python3-sklearn-lib:armhf (1.4.2+dfsg-3) ...
243s Setting up fonts-urw-base35 (20200910-8) ...
244s Setting up apache2-bin (2.4.59-2ubuntu2) ...
244s Setting up libcairo2:armhf (1.18.0-3build1) ...
244s Setting up python3-pil:armhf (10.3.0-2) ...
244s Setting up python3-pandas (2.1.4+dfsg-8) ...
249s Setting up libcgi-session-perl (4.48-4) ...
249s Setting up libxt6t64:armhf (1:1.2.1-1.2build1) ...
249s Setting up python3-sklearn (1.4.2+dfsg-3) ...
251s Setting up libxml-simple-perl (2.25-2) ...
251s Setting up libhttp-daemon-perl (6.16-1) ...
251s Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-1) ...
251s Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-1) ...
251s Setting up bioperl (1.7.8-1) ...
251s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7build1) ...
251s Setting up python3-cairo (1.26.1-1) ...
252s Setting up apache2 (2.4.59-2ubuntu2) ...
252s Enabling module mpm_event.
252s Enabling module authz_core.
252s Enabling module authz_host.
252s Enabling module authn_core.
252s Enabling module auth_basic.
252s Enabling module access_compat.
252s Enabling module authn_file.
252s Enabling module authz_user.
252s Enabling module alias.
252s Enabling module dir.
252s Enabling module autoindex.
252s Enabling module env.
252s Enabling module mime.
252s Enabling module negotiation.
252s Enabling module setenvif.
253s Enabling module filter.
253s Enabling module deflate.
253s Enabling module status.
253s Enabling module reqtimeout.
253s Enabling conf charset.
253s Enabling conf localized-error-pages.
253s Enabling conf other-vhosts-access-log.
253s Enabling conf security.
253s Enabling conf serve-cgi-bin.
253s Enabling site 000-default.
254s Created symlink /etc/systemd/system/multi-user.target.wants/apache2.service → /usr/lib/systemd/system/apache2.service.

254s Created symlink /etc/systemd/system/multi-user.target.wants/apache-htcacheclean.service → /usr/lib/systemd/system/apache-htcacheclean.service.

255s Setting up blt (2.5.3+dfsg-7build1) ...
255s Setting up python3-tk:armhf (3.12.3-0ubuntu1) ...
255s Setting up libbio-coordinate-perl (1.7.1-4) ...
255s Setting up python3-pil.imagetk:armhf (10.3.0-2) ...
255s Setting up python3-rlpycairo (0.3.0-3) ...
255s Setting up r-base-core (4.4.1-1) ...
256s 
256s Creating config file /etc/R/Renviron with new version
256s Setting up python3-reportlab (4.2.2-1) ...
256s Setting up genometools-common (1.6.5+ds-2.2) ...
256s Setting up r-bioc-biocgenerics (0.48.1-2) ...
256s Setting up r-bioc-dnacopy (1.76.0-1) ...
256s Setting up liblwp-protocol-https-perl (6.14-1) ...
256s Setting up libheif-plugin-libde265:armhf (1.17.6-3build1) ...
256s Setting up libwww-perl (6.77-1) ...
256s Setting up libheif1:armhf (1.17.6-3build1) ...
256s Setting up python3-fonttools (4.46.0-1build2) ...
257s Setting up libapache2-mod-perl2 (2.0.13-1build5) ...
258s apache2_invoke: Enable module perl
258s Setting up libgd3:armhf (2.3.3-9ubuntu5) ...
258s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
258s Setting up libbio-db-biofetch-perl (1.7.3-4) ...
258s Setting up libheif-plugin-aomdec:armhf (1.17.6-3build1) ...
258s Setting up python3-matplotlib (3.6.3-2ubuntu1) ...
259s Setting up libvm-ec2-perl (1.28-4) ...
259s Setting up libapache-dbi-perl (1.12-3) ...
259s Setting up libgd-perl (2.78-1build3) ...
259s Setting up libbio-db-gff-perl (1.7.4-1) ...
259s Setting up libbio-db-seqfeature-perl (1.7.4-2) ...
259s Setting up libbio-graphics-perl (2.40-6) ...
259s Setting up gbrowse (2.56+dfsg-12build3) ...
260s apache2_invoke: Enable configuration gbrowse
260s Processing triggers for man-db (2.12.1-2) ...
262s Processing triggers for install-info (7.1-3build2) ...
262s Processing triggers for libc-bin (2.39-0ubuntu9) ...
262s Processing triggers for ufw (0.36.2-6) ...
262s Processing triggers for sgml-base (1.31) ...
262s Setting up w3c-sgml-lib (1.3-3) ...
287s Setting up python3-biopython (1.83+dfsg1-3) ...
288s Setting up python3-gffutils (0.13-1) ...
289s Setting up cnvkit (0.9.10-2) ...
289s Setting up autopkgtest-satdep (0) ...
325s (Reading database ... 84283 files and directories currently installed.)
325s Removing autopkgtest-satdep (0) ...
331s autopkgtest [21:40:45]: test run-tests: [-----------------------
333s /usr/share/doc/augustus/tutorial/data/hints.rnaseq.intron.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/abinitio-browser.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/augustus-ppx.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/hints.est.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/hints.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/hints.rnaseq.ep.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/output-abinitio.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/output-browser.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/output.gff: is okay.
333s /usr/share/doc/augustus/tutorial/results/scipio.gff: is okay.
333s /usr/share/bedtools/test/fisher/tumor.gff: is okay.
333s /usr/share/bedtools/test/intersect/b.issue311.gff: is okay.
333s /usr/share/bedtools/test/intersect/gdc.gff: is okay.
333s /usr/share/bedtools/test/map/test.gff: is okay.
333s /usr/share/bedtools/test/merge/a.gff: is okay.
333s /usr/share/doc/cnvkit/examples/test/formats/example.gff: is okay.
333s /usr/share/EMBOSS/data/Efeatures.gff2: is okay.
333s /usr/share/EMBOSS/data/Efeatures.gff3: is okay.
333s /usr/share/EMBOSS/data/Etags.gff2: is okay.
333s /usr/share/EMBOSS/data/Etags.gff3: is okay.
333s /usr/share/EMBOSS/test/data/bioperl.gff3: is okay.
333s /usr/share/EMBOSS/test/data/eden1.gff3: is okay.
333s /usr/share/EMBOSS/test/data/featexample1.gff3: is okay.
333s /usr/share/EMBOSS/test/data/gmod-align.gff3: is okay.
333s /usr/share/EMBOSS/test/data/gmod-discontinuous.gff3: Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	1050	1500	.	+	.	ID=Match1;Name=agt830.5;Target=agt830.5	1	451
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	3000	3202	.	+	.	ID=Match1;Name=agt830.5;Target=agt830.5	452	654
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	5410	5500	.	-	.	ID=Match2;Name=agt830.3;Target=agt830.3	505	595
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	7000	7503	.	-	.	ID=Match2;Name=agt830.3;Target=agt830.3	1	504
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	1050	1500	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	1	451
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	5000	5500	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	452	952
333s Warning: unexpected tab character in last column, line truncated:
333s ctg123	est	EST_match	7000	7300	.	+	.	ID=Match3;Name=agt221.5;Target=agt221.5	953	1253
333s is okay.
333s /usr/share/EMBOSS/test/data/gmod-eden1.gff3: is okay.
333s /usr/share/EMBOSS/test/data/gmod-sonic1.gff3: is okay.
333s /usr/share/EMBOSS/test/data/gmod-sonic2.gff3: is okay.
333s /usr/share/EMBOSS/test/data/gmod-sonic3.gff3: is okay.
333s /usr/share/EMBOSS/test/data/hba.gff: Warning: unexpected tab character in last column, line truncated:
333s ctg123	example	gene	1050	9000	.	+	.	ID=EDEN;Name=EDEN;Note=protein	kinase
333s is okay.
333s /usr/share/EMBOSS/test/data/noid.gff: is okay.
333s /usr/share/EMBOSS/test/data/paamir.gff: is okay.
333s /usr/share/EMBOSS/test/data/paamir.gff3: is okay.
333s /usr/share/EMBOSS/test/data/seqexample.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes_simple.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff: is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff: Warning: unexpected tab character in last column, line truncated:
333s ctgA	est	HSP	7000	7300	.	+	.	EST agt221.5	
333s Warning: unexpected tab character in last column, line truncated:
333s ctgA	est	HSP	7000	7200	.	+	.	EST agt767.5	
333s is okay.
333s /usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff: is okay.
333s /usr/share/genometools/gtdata/doc/csa_example_consensus_spliced_alignments.gff3: is okay.
333s /usr/share/genometools/gtdata/doc/csa_example_spliced_alignments.gff3: is okay.
333s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sgp1.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/mhcregion/hs.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/mhcregion/mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs-mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.hs.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.AG.mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs-mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.hs.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.GT.mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs_utr.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm_utr.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.aplot.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff: is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gff: Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	5219	5832	1405	+	.	Target "NM_005641";	Start 11597;	End 12218;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1719	2099	1122	+	.	Target "NM_005641";	Start 7067;	End 7448;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	664	1262	944	+	.	Target "NM_005641";	Start 5482;	End 6065;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	4851	5137	848	+	.	Target "NM_005641";	Start 11198;	End 11485;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2375	2778	834	+	.	Target "NM_005641";	Start 8002;	End 8402;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3109	3832	831	+	.	Target "NM_005641";	Start 8902;	End 9636;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	4535	4738	741	+	.	Target "NM_005641";	Start 10806;	End 11009;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1239	1462	724	+	.	Target "NM_005641";	Start 6393;	End 6618;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1	292	691	+	.	Target "NM_005641";	Start 5138;	End 5426;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2116	2390	654	+	.	Target "NM_005641";	Start 7444;	End 7714;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	550	675	460	+	.	Target "NM_005641";	Start 5378;	End 5504;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	5558	5878	357	+	.	Target "NM_005641";	Start 11954;	End 12278;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3086	3175	253	+	.	Target "NM_005641";	Start 6827;	End 6924;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3079	3192	252	+	.	Target "NM_005641";	Start 1490;	End 1610;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3058	3177	212	+	.	Target "NM_005641";	Start 10064;	End 10180;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3083	3204	205	+	.	Target "NM_005641";	Start 3564;	End 3694;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3056	3172	204	+	.	Target "NM_005641";	Start 3724;	End 3837;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3061	3172	200	+	.	Target "NM_005641";	Start 3416;	End 3528;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3114	3172	195	+	.	Target "NM_005641";	Start 2801;	End 2860;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3028	3190	179	+	.	Target "NM_005641";	Start 10323;	End 10493;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3104	3175	178	+	.	Target "NM_005641";	Start 8752;	End 8825;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3114	3172	177	+	.	Target "NM_005641";	Start 2194;	End 2253;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3111	3177	177	+	.	Target "NM_005641";	Start 1390;	End 1461;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2757	2926	172	+	.	Target "NM_005641";	Start 6007;	End 6180;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2769	2855	170	+	.	Target "NM_005641";	Start 9981;	End 10063;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3118	3192	169	+	.	Target "NM_005641";	Start 8633;	End 8708;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3109	3172	165	+	.	Target "NM_005641";	Start 10246;	End 10311;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2710	3013	164	+	.	Target "NM_005641";	Start 10244;	End 10543;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3111	3190	164	+	.	Target "NM_005641";	Start 913;	End 994;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2728	3006	156	+	.	Target "NM_005641";	Start 929;	End 1212;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2788	2855	151	+	.	Target "NM_005641";	Start 6612;	End 6673;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3118	3167	150	+	.	Target "NM_005641";	Start 6314;	End 6364;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	357	463	150	+	.	Target "NM_005641";	Start 1748;	End 1853;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3082	3156	149	+	.	Target "NM_005641";	Start 10512;	End 10581;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2710	2804	149	+	.	Target "NM_005641";	Start 4552;	End 4647;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2791	2855	142	+	.	Target "NM_005641";	Start 1283;	End 1342;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2797	2842	140	+	.	Target "NM_005641";	Start 3670;	End 3715;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2727	2911	139	+	.	Target "NM_005641";	Start 605;	End 791;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2804	2863	137	+	.	Target "NM_005641";	Start 8525;	End 8585;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	399	453	132	+	.	Target "NM_005641";	Start 9592;	End 9647;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2811	2950	128	+	.	Target "NM_005641";	Start 8839;	End 8979;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2783	3006	127	+	.	Target "NM_005641";	Start 1290;	End 1523;	Strand +;	Frame .;	
333s is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff: Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	5219	5832	1405	+	.	Target "NM_005641" 11597 12218 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1719	2099	1122	+	.	Target "NM_005641" 7067 7448 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	664	1262	944	+	.	Target "NM_005641" 5482 is okay.
333s /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff: is okay.
333s /usr/share/doc/gff2ps/test-data/Hsap_BTK_annotation.gff: is okay.
333s /usr/share/doc/gff2ps/test-data/Hsap_BTK_geneid.gff: is okay.
333s /usr/share/doc/gff2ps/test-data/Hsap_BTK_genscan.gff: is okay.
333s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgp3X.gff: is okay.
333s /usr/share/doc/gff2ps/test-data/Hsap_BTK_sgpFO.gff: is okay.
333s /usr/share/htslib-test/test/tabix/gff_file.gff: is okay.
333s 6065 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	4851	5137	848	+	.	Target "NM_005641" 11198 11485 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2375	2778	834	+	.	Target "NM_005641" 8002 8402 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3109	3832	831	+	.	Target "NM_005641" 8902 9636 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	4535	4738	741	+	.	Target "NM_005641" 10806 11009 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1239	1462	724	+	.	Target "NM_005641" 6393 6618 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	1	292	691	+	.	Target "NM_005641" 5138 5426 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2116	2390	654	+	.	Target "NM_005641" 7444 7714 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	550	675	460	+	.	Target "NM_005641" 5378 5504 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	5558	5878	357	+	.	Target "NM_005641" 11954 12278 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3086	3175	253	+	.	Target "NM_005641" 6827 6924 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3079	3192	252	+	.	Target "NM_005641" 1490 1610 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3058	3177	212	+	.	Target "NM_005641" 10064 10180 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3083	3204	205	+	.	Target "NM_005641" 3564 3694 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3056	3172	204	+	.	Target "NM_005641" 3724 3837 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3061	3172	200	+	.	Target "NM_005641" 3416 3528 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3114	3172	195	+	.	Target "NM_005641" 2801 2860 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3028	3190	179	+	.	Target "NM_005641" 10323 10493 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3104	3175	178	+	.	Target "NM_005641" 8752 8825 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3114	3172	177	+	.	Target "NM_005641" 2194 2253 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3111	3177	177	+	.	Target "NM_005641" 1390 1461 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2757	2926	172	+	.	Target "NM_005641" 6007 6180 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2769	2855	170	+	.	Target "NM_005641" 9981 10063 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3118	3192	169	+	.	Target "NM_005641" 8633 8708 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3109	3172	165	+	.	Target "NM_005641" 10246 10311 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2710	3013	164	+	.	Target "NM_005641" 10244 10543 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3111	3190	164	+	.	Target "NM_005641" 913 994 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2728	3006	156	+	.	Target "NM_005641" 929 1212 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2788	2855	151	+	.	Target "NM_005641" 6612 6673 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3118	3167	150	+	.	Target "NM_005641" 6314 6364 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	357	463	150	+	.	Target "NM_005641" 1748 1853 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	3082	3156	149	+	.	Target "NM_005641" 10512 10581 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2710	2804	149	+	.	Target "NM_005641" 4552 4647 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2791	2855	142	+	.	Target "NM_005641" 1283 1342 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2797	2842	140	+	.	Target "NM_005641" 3670 3715 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2727	2911	139	+	.	Target "NM_005641" 605 791 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2804	2863	137	+	.	Target "NM_005641" 8525 8585 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	399	453	132	+	.	Target "NM_005641" 9592 9647 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2811	2950	128	+	.	Target "NM_005641" 8839 8979 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	BLASTN	hsp	2783	3006	127	+	.	Target "NM_005641" 1290 1523 + .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4867	5778	839	+	.	Target "NM_005641";	Start 11212;	End 12162;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4874	5785	645	+	.	Target "NM_005641";	Start 11219;	End 12151;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2379	2621	344	+	.	Target "NM_005641";	Start 8006;	End 8248;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	673	1017	321	+	.	Target "NM_005641";	Start 5471;	End 5833;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4519	4773	315	+	.	Target "NM_005641";	Start 10778;	End 11065;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1719	1913	285	+	.	Target "NM_005641";	Start 7067;	End 7261;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2	172	262	+	.	Target "NM_005641";	Start 5139;	End 5309;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1212	1409	252	+	.	Target "NM_005641";	Start 6373;	End 6564;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	762	1061	252	+	.	Target "NM_005641";	Start 5572;	End 5880;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3432	3638	247	+	.	Target "NM_005641";	Start 9233;	End 9439;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2378	2605	227	+	.	Target "NM_005641";	Start 8005;	End 8232;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3140	3613	194	+	.	Target "NM_005641";	Start 8935;	End 9414;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2116	2373	190	+	.	Target "NM_005641";	Start 7444;	End 7698;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	6	173	188	+	.	Target "NM_005641";	Start 5143;	End 5310;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	505	738	187	+	.	Target "NM_005641";	Start 5322;	End 5579;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	7	174	184	+	.	Target "NM_005641";	Start 5144;	End 5311;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1228	1458	178	+	.	Target "NM_005641";	Start 6368;	End 6613;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1906	2100	159	+	.	Target "NM_005641";	Start 7265;	End 7450;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1980	2348	159	+	.	Target "NM_005641";	Start 7329;	End 7676;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1941	2126	136	+	.	Target "NM_005641";	Start 7288;	End 7482;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1104	1226	135	+	.	Target "NM_005641";	Start 5927;	End 6040;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5612	5878	94	+	.	Target "NM_005641";	Start 12030;	End 12278;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2791	2877	73	+	.	Target "NM_005641";	Start 676;	End 744;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3083	3175	71	+	.	Target "NM_005641";	Start 10044;	End 10178;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2773	2880	71	+	.	Target "NM_005641";	Start 1278;	End 1358;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	683	787	65	+	.	Target "NM_005641";	Start 3408;	End 3518;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3503	3724	63	+	.	Target "NM_005641";	Start 11672;	End 11920;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	405	464	61	+	.	Target "NM_005641";	Start 1930;	End 1989;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2790	3026	61	+	.	Target "NM_005641";	Start 6614;	End 6844;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4895	5158	60	+	.	Target "NM_005641";	Start 11942;	End 12223;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4097	60	+	.	Target "NM_005641";	Start 6339;	End 6395;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2785	2850	59	+	.	Target "NM_005641";	Start 10005;	End 10058;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	686	784	59	+	.	Target "NM_005641";	Start 6667;	End 6771;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3121	3186	59	+	.	Target "NM_005641";	Start 6873;	End 6935;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3028	3171	59	+	.	Target "NM_005641";	Start 3684;	End 3836;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3123	3182	59	+	.	Target "NM_005641";	Start 2946;	End 3005;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	304	519	55	+	.	Target "NM_005641";	Start 9309;	End 9518;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4100	54	+	.	Target "NM_005641";	Start 10281;	End 10340;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4047	4109	54	+	.	Target "NM_005641";	Start 8664;	End 8726;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3031	3174	53	+	.	Target "NM_005641";	Start 10322;	End 10477;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	686	772	53	+	.	Target "NM_005641";	Start 3720;	End 3812;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2770	2850	53	+	.	Target "NM_005641";	Start 6603;	End 6668;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3136	3177	53	+	.	Target "NM_005641";	Start 1110;	End 1151;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4579	4647	52	+	.	Target "NM_005641";	Start 8188;	End 8256;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3028	3141	52	+	.	Target "NM_005641";	Start 685;	End 810;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2804	2836	51	+	.	Target "NM_005641";	Start 8525;	End 8557;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3095	3175	51	+	.	Target "NM_005641";	Start 10407;	End 10478;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4002	4097	51	+	.	Target "NM_005641";	Start 4547;	End 4645;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4166	4249	50	+	.	Target "NM_005641";	Start 7241;	End 7333;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5536	5694	50	+	.	Target "NM_005641";	Start 11141;	End 11311;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	555	608	50	+	.	Target "NM_005641";	Start 7342;	End 7392;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	405	464	50	+	.	Target "NM_005641";	Start 7849;	End 7908;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1447	1500	49	+	.	Target "NM_005641";	Start 6928;	End 6978;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2916	3011	49	+	.	Target "NM_005641";	Start 10443;	End 10541;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	931	1125	49	+	.	Target "NM_005641";	Start 5746;	End 5943;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1501	1587	49	+	.	Target "NM_005641";	Start 7763;	End 7849;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3028	3168	49	+	.	Target "NM_005641";	Start 1465;	End 1587;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3121	3168	48	+	.	Target "NM_005641";	Start 6321;	End 6365;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2792	2842	48	+	.	Target "NM_005641";	Start 3674;	End 3715;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3083	3139	48	+	.	Target "NM_005641";	Start 4520;	End 4585;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4029	4091	48	+	.	Target "NM_005641";	Start 2821;	End 2880;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2913	2969	47	+	.	Target "NM_005641";	Start 8482;	End 8538;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3118	3150	47	+	.	Target "NM_005641";	Start 10544;	End 10576;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4047	4097	47	+	.	Target "NM_005641";	Start 8493;	End 8543;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	689	784	47	+	.	Target "NM_005641";	Start 4665;	End 4766;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3086	3115	47	+	.	Target "NM_005641";	Start 6827;	End 6856;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3083	3121	47	+	.	Target "NM_005641";	Start 6654;	End 6692;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3056	3211	47	+	.	Target "NM_005641";	Start 2989;	End 3156;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3136	3168	46	+	.	Target "NM_005641";	Start 10275;	End 10307;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	408	476	46	+	.	Target "NM_005641";	Start 1798;	End 1866;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4888	4950	46	+	.	Target "NM_005641";	Start 10422;	End 10484;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	546	590	46	+	.	Target "NM_005641";	Start 3051;	End 3086;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2806	2844	46	+	.	Target "NM_005641";	Start 6047;	End 6094;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5758	5823	46	+	.	Target "NM_005641";	Start 10842;	End 10907;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2794	2871	46	+	.	Target "NM_005641";	Start 3670;	End 3747;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3621	3713	46	+	.	Target "NM_005641";	Start 4612;	End 4704;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1143	1187	45	+	.	Target "NM_005641";	Start 8580;	End 8624;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3029	3121	45	+	.	Target "NM_005641";	Start 1299;	End 1361;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4047	4091	45	+	.	Target "NM_005641";	Start 3813;	End 3857;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4233	4304	45	+	.	Target "NM_005641";	Start 2166;	End 2240;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4353	4457	45	+	.	Target "NM_005641";	Start 2071;	End 2172;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3817	3882	44	+	.	Target "NM_005641";	Start 9908;	End 9973;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3012	3152	44	+	.	Target "NM_005641";	Start 8506;	End 8667;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3144	3176	44	+	.	Target "NM_005641";	Start 10447;	End 10479;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5430	5534	44	+	.	Target "NM_005641";	Sta/usr/share/doc/libbio-graphics-perl/examples/feature_data.gff: rt 9313;	End 9423;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4655	4735	44	+	.	Target "NM_005641";	Start 6495;	End 6575;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3793	3849	44	+	.	Target "NM_005641";	Start 5563;	End 5619;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3118	3165	44	+	.	Target "NM_005641";	Start 3610;	End 3654;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3083	3166	44	+	.	Target "NM_005641";	Start 1017;	End 1100;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5625	5684	44	+	.	Target "NM_005641";	Start 5493;	End 5552;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3138	3176	43	+	.	Target "NM_005641";	Start 8788;	End 8826;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3654	3728	43	+	.	Target "NM_005641";	Start 9429;	End 9503;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	405	476	43	+	.	Target "NM_005641";	Start 4206;	End 4277;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	856	978	43	+	.	Target "NM_005641";	Start 6448;	End 6570;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1600	1629	43	+	.	Target "NM_005641";	Start 4298;	End 4327;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5434	5481	43	+	.	Target "NM_005641";	Start 10718;	End 10765;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3075	3125	43	+	.	Target "NM_005641";	Start 11897;	End 11947;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2978	3019	43	+	.	Target "NM_005641";	Start 3874;	End 3915;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4091	43	+	.	Target "NM_005641";	Start 1561;	End 1608;	Strand +;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4866	5786	772	-	.	Target "NM_005641";	Start 11211;	End 12152;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2258	2611	309	-	.	Target "NM_005641";	Start 7852;	End 8238;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	762	1058	293	-	.	Target "NM_005641";	Start 5572;	End 5877;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4518	4721	290	-	.	Target "NM_005641";	Start 10777;	End 10992;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1718	1912	261	-	.	Target "NM_005641";	Start 7066;	End 7260;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3392	3643	250	-	.	Target "NM_005641";	Start 9172;	End 9441;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4	174	236	-	.	Target "NM_005641";	Start 5141;	End 5311;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1259	1408	235	-	.	Target "NM_005641";	Start 6414;	End 6563;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2116	2349	209	-	.	Target "NM_005641";	Start 7444;	End 7677;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3	173	192	-	.	Target "NM_005641";	Start 5140;	End 5310;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2	172	190	-	.	Target "NM_005641";	Start 5139;	End 5309;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2112	2345	166	-	.	Target "NM_005641";	Start 7440;	End 7673;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1998	2099	148	-	.	Target "NM_005641";	Start 7348;	End 7449;	Strand -;	Frame .;	
333s is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff: is okay.
333s /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3: is okay.
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3291	3386	137	-	.	Target "NM_005641";	Start 9067;	End 9162;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	554	769	135	-	.	Target "NM_005641";	Start 5386;	End 5583;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1118	1225	125	-	.	Target "NM_005641";	Start 5941;	End 6039;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5705	5878	83	-	.	Target "NM_005641";	Start 12081;	End 12278;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5677	5877	76	-	.	Target "NM_005641";	Start 12065;	End 12277;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3036	3185	73	-	.	Target "NM_005641";	Start 6791;	End 6934;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3030	3167	67	-	.	Target "NM_005641";	Start 6242;	End 6364;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	930	1091	66	-	.	Target "NM_005641";	Start 5745;	End 5909;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3052	3177	65	-	.	Target "NM_005641";	Start 10013;	End 10180;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4035	4103	65	-	.	Target "NM_005641";	Start 2824;	End 2886;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2978	3142	64	-	.	Target "NM_005641";	Start 2639;	End 2797;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3139	3177	61	-	.	Target "NM_005641";	Start 1113;	End 1151;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3915	4103	60	-	.	Target "NM_005641";	Start 8367;	End 8549;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2999	3148	60	-	.	Target "NM_005641";	Start 686;	End 817;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3136	3180	59	-	.	Target "NM_005641";	Start 10439;	End 10483;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3089	3190	58	-	.	Target "NM_005641";	Start 884;	End 994;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4103	57	-	.	Target "NM_005641";	Start 10281;	End 10340;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2769	2870	57	-	.	Target "NM_005641";	Start 5032;	End 5118;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4103	57	-	.	Target "NM_005641";	Start 3807;	End 3863;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3121	3177	56	-	.	Target "NM_005641";	Start 1405;	End 1461;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	638	715	56	-	.	Target "NM_005641";	Start 10988;	End 11065;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3115	3186	55	-	.	Target "NM_005641";	Start 6849;	End 6935;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3089	3166	55	-	.	Target "NM_005641";	Start 4821;	End 4907;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	399	542	54	-	.	Target "NM_005641";	Start 1789;	End 1911;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2789	2944	54	-	.	Target "NM_005641";	Start 1282;	End 1452;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3041	3163	54	-	.	Target "NM_005641";	Start 2112;	End 2240;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	5574	5693	53	-	.	Target "NM_005641";	Start 11203;	End 11310;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2728	3000	53	-	.	Target "NM_005641";	Start 4572;	End 4838;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2986	3189	53	-	.	Target "NM_005641";	Start 3493;	End 3678;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	399	503	53	-	.	Target "NM_005641";	Start 9591;	End 9707;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	405	467	52	-	.	Target "NM_005641";	Start 1930;	End 1992;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2785	3006	52	-	.	Target "NM_005641";	Start 2692;	End 2925;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3142	3171	52	-	.	Target "NM_005641";	Start 3807;	End 3836;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3139	3195	52	-	.	Target "NM_005641";	Start 1558;	End 1614;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	224	295	51	-	.	Target "NM_005641";	Start 298;	End 369;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2784	2855	51	-	.	Target "NM_005641";	Start 10004;	End 10063;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2787	2855	51	-	.	Target "NM_005641";	Start 6611;	End 6673;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3135	3176	51	-	.	Target "NM_005641";	Start 1109;	End 1150;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3032	3148	50	-	.	Target "NM_005641";	Start 8535;	End 8663;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3918	4088	50	-	.	Target "NM_005641";	Start 8541;	End 8705;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3122	3190	50	-	.	Target "NM_005641";	Start 2945;	End 3013;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3577	3663	50	-	.	Target "NM_005641";	Start 3545;	End 3634;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2659	2865	49	-	.	Target "NM_005641";	Start 5924;	End 6115;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3121	3171	49	-	.	Target "NM_005641";	Start 3480;	End 3527;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3118	3171	49	-	.	Target "NM_005641";	Start 2809;	End 2859;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	399	521	48	-	.	Target "NM_005641";	Start 4200;	End 4301;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3135	3173	48	-	.	Target "NM_005641";	Start 10438;	End 10476;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2905	3006	48	-	.	Target "NM_005641";	Start 6192;	End 6299;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4020	4103	48	-	.	Target "NM_005641";	Start 2202;	End 2279;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3139	3189	47	-	.	Target "NM_005641";	Start 10278;	End 10328;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1973	2083	47	-	.	Target "NM_005641";	Start 1531;	End 1635;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4043	4114	47	-	.	Target "NM_005641";	Start 3809;	End 3883;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4227	4262	46	-	.	Target "NM_005641";	Start 10701;	End 10736;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3142	3177	46	-	.	Target "NM_005641";	Start 8487;	End 8522;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2915	2968	46	-	.	Target "NM_005641";	Start 10442;	End 10495;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3577	3639	46	-	.	Target "NM_005641";	Start 10736;	End 10804;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3077	3163	46	-	.	Target "NM_005641";	Start 6691;	End 6771;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1179	1295	46	-	.	Target "NM_005641";	Start 7256;	End 7369;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4040	4096	46	-	.	Target "NM_005641";	Start 6338;	End 6394;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2915	2968	46	-	.	Target "NM_005641";	Start 3495;	End 3548;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	903	1046	45	-	.	Target "NM_005641";	Start 41;	End 181;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1882	1920	45	-	.	Target "NM_005641";	Start 9717;	End 9755;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2138	2248	45	-	.	Target "NM_005641";	Start 207;	End 329;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4556	4660	45	-	.	Target "NM_005641";	Start 6331;	End 6435;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2802	2915	45	-	.	Target "NM_005641";	Start 3675;	End 3797;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4041	4067	45	-	.	Target "NM_005641";	Start 812;	End 838;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3104	3148	44	-	.	Target "NM_005641";	Start 10530;	End 10574;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	949	984	44	-	.	Target "NM_005641";	Start 6325;	End 6360;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	2110	2166	44	-	.	Target "NM_005641";	Start 12002;	End 12058;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4348	4377	44	-	.	Target "NM_005641";	Start 2060;	End 2089;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3140	3181	43	-	.	Target "NM_005641";	Start 8790;	End 8831;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4529	4606	43	-	.	Target "NM_005641";	Start 10185;	End 10262;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	1189	1383	43	-	.	Target "NM_005641";	Start 6370;	End 6537;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3119	3193	43	-	.	Target "NM_005641";	Start 4864;	End 4938;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	3120	3167	43	-	.	Target "NM_005641";	Start 1542;	End 1586;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	632	706	43	-	.	Target "NM_005641";	Start 9145;	End 9219;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4355	4378	43	-	.	Target "NM_005641";	Start 2069;	End 2092;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4352	4402	43	-	.	Target "NM_005641";	Start 2070;	End 2120;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s NM_009315	TBLASTX	hsp	4639	4668	43	-	.	Target "NM_005641";	Start 3306;	End 3335;	Strand -;	Frame .;	
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	1728	1787	 0.09	-	0	gene_1	# AA 212:231
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	2506	2618	 2.93	-	2	gene_1	# AA 174:211
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	4112	4225	 0.50	-	2	gene_1	# AA 136:174
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	8833	8959	-0.24	-	0	gene_1	# AA  94:136
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	9956	10089	 1.98	-	2	gene_1	# AA  49: 93
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	13081	13159	 0.13	-	0	gene_1	# AA  23: 49
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	13984	14049	-0.61	-	0	gene_1	# AA   1: 22
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Terminal	17520	17785	 4.22	-	2	gene_2	# AA  86:174
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	19296	19551	14.31	-	0	gene_2	# AA   1: 86
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Terminal	76391	76462	 1.12	-	0	gene_3	# AA 636:659
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	79700	79857	 1.52	-	2	gene_3	# AA 583:635
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	80376	80494	 0.93	-	1	gene_3	# AA 543:583
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	81136	81200	 0.46	-	0	gene_3	# AA 522:543
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	82558	82774	 5.08	-	1	gene_3	# AA 449:521
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	83290	83533	 4.90	-	2	gene_3	# AA 368:449
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	84816	84943	 0.10	-	1	gene_3	# AA 325:368
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	85123	85202	 1.44	-	0	gene_3	# AA 299:325
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	85799	85853	 0.18	-	1	gene_3	# AA 280:298
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	86594	86656	 1.66	-	1	gene_3	# AA 259:280
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	87074	87261	 4.48	-	0	gene_3	# AA 197:259
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	88679	88746	-0.20	-	2	gene_3	# AA 174:196
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	89067	89195	 2.37	-	2	gene_3	# AA 131:174
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	96504	96585	-1.14	-	0	gene_3	# AA 104:131
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	98139	98207	 2.20	-	0	gene_3	# AA  81:103
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	101042	101140	 1.03	-	0	gene_3	# AA  48: 80
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	101650	101790	 2.04	-	0	gene_3	# AA   1: 47
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	117154	117294	-1.72	+	0	gene_4	# AA   1: 47
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	117965	118070	 4.71	+	0	gene_4	# AA  48: 83
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	118261	118328	 1.96	+	2	gene_4	# AA  83:105
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Terminal	122234	122254	-1.95	+	0	gene_4	# AA 106:112
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Terminal	124315	124605	 1.49	-	0	gene_5	# AA 321:417
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	124876	125073	 4.19	-	0	gene_5	# AA 255:320
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	125291	125452	 1.81	-	0	gene_5	# AA 201:254
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	128085	128315	 6.42	-	0	gene_5	# AA 124:200
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	130317	130491	 3.37	-	1	gene_5	# AA  65:123
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	134216	134409	 3.06	-	0	gene_5	# AA   1: 65
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Single	138576	139844	33.14	+	0	gene_6	# AA   1:423
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	First	144801	145043	 4.49	+	0	gene_7	# AA   1: 81
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	170448	170661	 4.00	+	0	gene_7	# AA  82:153
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	geneid_v1.0	Internal	172504	172550	 0.78	+	2	gene_7	# AA 153:168
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	4565	4627	8.56	-	0	gene_1	#	AA	149:169
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	9956	10143	23.75	-	2	gene_1	#	AA	86:148
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	19296	19551	15.97	-	0	gene_1	#	AA	1:	86
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	62698	62700	-9.86	+	0	gene_2	#	AA	1:	1
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	67179	67508	54.90	+	0	gene_2	#	AA	2:111
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	73005	73235	25.73	-	0	gene_3	#	AA	75:151
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	74949	75170	18.73	-	0	gene_3	#	AA	1:	74
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	79661	79857	26.63	-	2	gene_4	#	AA	643:708
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	80376	80494	21.80	-	1	gene_4	#	AA	603:643
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	81136	81200	-1.59	-	0	gene_4	#	AA	582:603
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	82558	82813	51.33	-	1	gene_4	#	AA	496:581
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	83290	83533	36.85	-	2	gene_4	#	AA	415:496
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	84015	84089	4.73	-	2	gene_4	#	AA	390:415
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	84816	84943	22.24	-	1	gene_4	#	AA	347:390
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	85123	85202	-0.04	-	0	gene_4	#	AA	321:347
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	85799	85853	7.75	-	1	gene_4	#	AA	302:320
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	86594	86656	13.00	-	1	gene_4	#	AA	281:302
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	87074	87261	30.63	-	0	gene_4	#	AA	219:281
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	88679	88746	2.93	-	2	gene_4	#	AA	196:218
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	89067	89195	23.15	-	2	gene_4	#	AA	153:196
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	96504	96585	8.97	-	0	gene_4	#	AA	126:153
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	98139	98207	0.53	-	0	gene_4	#	AA	103:125
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	101042	101140	16.57	-	0	gene_4	#	AA	70:102
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	101650	101856	25.46	-	0	gene_4	#	AA	1:	69
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	117550	117552	-2.98	+	0	gene_5	#	AA	1:	1
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	117965	118070	22.92	+	0	gene_5	#	AA	2:	37
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	118261	118328	16.58	+	2	gene_5	#	AA	37:	59
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	121841	121963	15.59	+	0	gene_5	#	AA	60:100
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	122234	122254	-4.89	+	0	gene_5	#	AA	101:107
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	124315	124605	22.92	-	0	gene_6	#	AA	299:395
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	124876	125073	18.14	-	0	gene_6	#	AA	233:298
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	125291	125439	21.75	-	2	gene_6	#	AA	183:232
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	128138	128315	26.47	-	0	gene_6	#	AA	124:183
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Internal	130317	130491	29.80	-	1	gene_6	#	AA	65:123
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	134216	134409	27.80	-	0	gene_6	#	AA	1:	65
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Single	138495	139844	385.08	+	0	gene_7	#	AA	1:450
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	First	143504	143527	-6.11	+	0	gene_8	#	AA	1:	8
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.3X	Terminal	170195	170470	60.77	+	0	gene_8	#	AA	9:100
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	2506	2618	3.13	-	2	gene_1	#	AA	86:123
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	19296	19551	15.97	-	0	gene_1	#	AA	1:	86
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Terminal	73005	73166	23.20	-	0	gene_2	#	AA	45:	98
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	75039	75170	14.19	-	0	gene_2	#	AA	1:	44
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Terminal	76391	76462	7.44	-	0	gene_3	#	AA	692:715
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	79700	79857	27.01	-	2	gene_3	#	AA	639:691
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	80376	80494	22.45	-	1	gene_3	#	AA	599:639
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	81136	81200	8.61	-	0	gene_3	#	AA	578:599
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	82558	82774	44.53	-	1	gene_3	#	AA	505:577
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	83290	83533	36.85	-	2	gene_3	#	AA	424:505
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	84015	84089	4.73	-	2	gene_3	#	AA	399:424
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	84816	84943	22.49	-	1	gene_3	#	AA	356:399
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	85123	85202	-0.04	-	0	gene_3	#	AA	330:356
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	85799	85853	7.75	-	1	gene_3	#	AA	311:329
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	86594	86656	13.00	-	1	gene_3	#	AA	290:311
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	87074	87261	30.63	-	0	gene_3	#	AA	228:290
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	88679	88746	2.93	-	2	gene_3	#	AA	205:227
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	89067	89195	23.15	-	2	gene_3	#	AA	162:205
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	96504	96585	8.97	-	0	gene_3	#	AA	135:162
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	98139	98207	9.18	-	0	gene_3	#	AA	112:134
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	101042	101140	16.57	-	0	gene_3	#	AA	79:111
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	101650	101839	30.76	-	1	gene_3	#	AA	15:	78
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	112445	112488	-1.77	-	0	gene_3	#	AA	1:	15
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	117550	117552	-2.98	+	0	gene_4	#	AA	1:	1
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	117965	118070	22.92	+	0	gene_4	#	AA	2:	37
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	118261	118328	16.58	+	2	gene_4	#	AA	37:	59
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	121841	121963	15.59	+	0	gene_4	#	AA	60:100
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Terminal	122234	122254	-4.89	+	0	gene_4	#	AA	101:107
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Terminal	124315	124605	22.92	-	0	gene_5	#	AA	334:430
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	124876	125073	37.51	-	0	gene_5	#	AA	268:333
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	125291	125452	26.77	-	0	gene_5	#	AA	214:267
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	127172	127263	5.78	-	2	gene_5	#	AA	183:213
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	128138	128315	37.95	-	0	gene_5	#	AA	124:183
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	130317	130491	30.15	-	1	gene_5	#	AA	65:123
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	134216	134409	27.80	-	0	gene_5	#	AA	1:	65
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Single	138495	139844	270.80	+	0	gene_6	#	AA	1:450
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	First	170637	170661	-0.90	+	0	gene_7	#	AA	1:	9
333s Warning: unexpected tab character in last column, line truncated:
333s Hsap_BTK	SGP.homol	Internal	172504	172550	2.43	+	2	gene_7	#	AA	9:	24
334s autopkgtest [21:40:48]: test run-tests: -----------------------]
338s run-tests            PASS
338s autopkgtest [21:40:52]: test run-tests:  - - - - - - - - - - results - - - - - - - - - -
344s autopkgtest [21:40:57]: @@@@@@@@@@@@@@@@@@@@ summary
344s run-tests            PASS