0s autopkgtest [11:50:42]: starting date and time: 2024-06-29 11:50:42+0000
  0s autopkgtest [11:50:42]: git checkout: 85adf9a1 setup-testbed: prevent /tmp from getting a tmpfs mount
  0s autopkgtest [11:50:42]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r6732v5p/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:gffread --apt-upgrade gffread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gffread/0.12.7-5 -- lxd -r lxd-armhf-10.145.243.39 lxd-armhf-10.145.243.39:autopkgtest/ubuntu/oracular/armhf
 25s autopkgtest [11:51:07]: testbed dpkg architecture: armhf
 27s autopkgtest [11:51:09]: testbed apt version: 2.9.5
 27s autopkgtest [11:51:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 35s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [110 kB]
 35s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B]
 35s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [7052 B]
 35s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [53.6 kB]
 35s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [370 kB]
 35s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [77.5 kB]
 35s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B]
 35s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [312 kB]
 35s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1768 B]
 35s Fetched 936 kB in 1s (1143 kB/s)
 35s Reading package lists...
 53s tee: /proc/self/fd/2: Permission denied
 74s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease
 74s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease
 74s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease
 74s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease
 75s Reading package lists...
 75s Reading package lists...
 75s Building dependency tree...
 75s Reading state information...
 76s Calculating upgrade...
 76s The following packages will be upgraded:
 76s   dracut-install
 76s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 76s Need to get 35.3 kB of archives.
 76s After this operation, 1024 B of additional disk space will be used.
 76s Get:1 http://ftpmaster.internal/ubuntu oracular/main armhf dracut-install armhf 102-3ubuntu3 [35.3 kB]
 76s Fetched 35.3 kB in 0s (169 kB/s)
 77s (Reading database ... 
(Reading database ... 5%
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(Reading database ... 75%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58374 files and directories currently installed.)
 77s Preparing to unpack .../dracut-install_102-3ubuntu3_armhf.deb ...
 77s Unpacking dracut-install (102-3ubuntu3) over (102-3ubuntu2) ...
 77s Setting up dracut-install (102-3ubuntu3) ...
 77s Reading package lists...
 77s Building dependency tree...
 77s Reading state information...
 77s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 79s autopkgtest [11:52:01]: rebooting testbed after setup commands that affected boot
122s autopkgtest [11:52:44]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun  3 16:28:24 UTC 2
153s autopkgtest [11:53:15]: @@@@@@@@@@@@@@@@@@@@ apt-source gffread
163s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (dsc) [2577 B]
163s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (tar) [404 kB]
163s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe gffread 0.12.7-5 (diff) [8940 B]
163s gpgv: Signature made Thu Jun 20 19:11:39 2024 UTC
163s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
163s gpgv:                issuer "emollier@debian.org"
163s gpgv: Can't check signature: No public key
163s dpkg-source: warning: cannot verify inline signature for ./gffread_0.12.7-5.dsc: no acceptable signature found
163s autopkgtest [11:53:25]: testing package gffread version 0.12.7-5
165s autopkgtest [11:53:27]: build not needed
167s autopkgtest [11:53:29]: test run-tests: preparing testbed
177s Reading package lists...
178s Building dependency tree...
178s Reading state information...
178s Starting pkgProblemResolver with broken count: 1
178s Starting 2 pkgProblemResolver with broken count: 1
178s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
178s Broken autopkgtest-satdep:armhf Depends on gffread:armhf < none | 0.12.7-5 @un uH >
178s   Considering gffread:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated libgclib3t64:armhf
178s   Re-Instated gffread:armhf
178s Broken autopkgtest-satdep:armhf Depends on augustus-doc:armhf < none | 3.5.0+dfsg-4build5 @un uH >
178s   Considering augustus-doc:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated augustus-doc:armhf
178s Broken autopkgtest-satdep:armhf Depends on bedtools-test:armhf < none | 2.31.1+dfsg-2 @un uH >
178s   Considering bedtools-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated bedtools-test:armhf
178s Broken autopkgtest-satdep:armhf Depends on emboss-data:armhf < none | 6.6.0+dfsg-12ubuntu2 @un uH >
178s   Considering emboss-data:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated emboss-data:armhf
178s Broken autopkgtest-satdep:armhf Depends on emboss-test:armhf < none | 6.6.0+dfsg-12ubuntu2 @un uH >
178s   Considering emboss-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated emboss-test:armhf
178s Broken autopkgtest-satdep:armhf Depends on gbrowse:armhf < none | 2.56+dfsg-12build3 @un uH >
178s   Considering gbrowse:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated libapr1t64:armhf
178s   Re-Instated libaprutil1t64:armhf
178s   Re-Instated libaprutil1-dbd-sqlite3:armhf
178s   Re-Instated libaprutil1-ldap:armhf
178s   Re-Instated liblua5.4-0:armhf
178s   Re-Instated apache2-bin:armhf
178s   Re-Instated apache2-data:armhf
178s   Re-Instated apache2-utils:armhf
178s   Re-Instated apache2:armhf
178s   Re-Instated libio-string-perl:armhf
178s   Re-Instated libdata-stag-perl:armhf
178s   Re-Instated libbio-perl-perl:armhf
178s   Re-Instated libclass-data-inheritable-perl:armhf
178s   Re-Instated libdevel-stacktrace-perl:armhf
178s   Re-Instated libexception-class-perl:armhf
178s   Re-Instated libtest-deep-perl:armhf
178s   Re-Instated libcapture-tiny-perl:armhf
178s   Re-Instated libalgorithm-diff-perl:armhf
178s   Re-Instated libtext-diff-perl:armhf
178s   Re-Instated libtest-differences-perl:armhf
178s   Re-Instated libsub-uplevel-perl:armhf
178s   Re-Instated libtest-exception-perl:armhf
178s   Re-Instated libtest-warn-perl:armhf
178s   Re-Instated libtest-most-perl:armhf
178s   Re-Instated bioperl:armhf
178s   Re-Instated libfreetype6:armhf
178s   Re-Instated fonts-dejavu-mono:armhf
178s   Re-Instated fonts-dejavu-core:armhf
178s   Re-Instated fontconfig-config:armhf
178s   Re-Instated libfontconfig1:armhf
178s   Re-Instated libsharpyuv0:armhf
178s   Re-Instated libaom3:armhf
178s   Re-Instated libheif-plugin-aomdec:armhf
178s   Re-Instated libde265-0:armhf
178s   Re-Instated libheif-plugin-libde265:armhf
178s   Re-Instated libheif1:armhf
178s   Re-Instated libjpeg-turbo8:armhf
178s   Re-Instated libjpeg8:armhf
178s   Re-Instated libdeflate0:armhf
178s   Re-Instated libjbig0:armhf
178s   Re-Instated liblerc4:armhf
178s   Re-Instated libwebp7:armhf
178s   Re-Instated libtiff6:armhf
178s   Re-Instated libxpm4:armhf
178s   Re-Instated libgd3:armhf
178s   Re-Instated libgd-perl:armhf
178s   Re-Instated libdevel-symdump-perl:armhf
178s   Re-Instated liburi-perl:armhf
178s   Re-Instated libencode-locale-perl:armhf
178s   Re-Instated libtimedate-perl:armhf
178s   Re-Instated libhttp-date-perl:armhf
178s   Re-Instated libfile-listing-perl:armhf
178s   Re-Instated libhtml-tagset-perl:armhf
178s   Re-Instated libhtml-parser-perl:armhf
178s   Re-Instated libhtml-tree-perl:armhf
178s   Re-Instated libclone-perl:armhf
178s   Re-Instated libio-html-perl:armhf
178s   Re-Instated liblwp-mediatypes-perl:armhf
178s   Re-Instated libhttp-message-perl:armhf
178s   Re-Instated libhttp-cookies-perl:armhf
178s   Re-Instated libhttp-negotiate-perl:armhf
178s   Re-Instated perl-openssl-defaults:armhf
178s   Re-Instated libnet-ssleay-perl:armhf
178s   Re-Instated libio-socket-ssl-perl:armhf
178s   Re-Instated libnet-http-perl:armhf
178s   Re-Instated liblwp-protocol-https-perl:armhf
178s   Re-Instated libtry-tiny-perl:armhf
178s   Re-Instated libwww-robotrules-perl:armhf
178s   Re-Instated libwww-perl:armhf
178s   Re-Instated libapache2-mod-perl2:armhf
178s   Re-Instated libdbi-perl:armhf
178s   Re-Instated libapache-dbi-perl:armhf
178s   Re-Instated libbio-db-biofetch-perl:armhf
178s   Re-Instated libcgi-pm-perl:armhf
178s   Re-Instated libbio-db-gff-perl:armhf
178s   Re-Instated libpq5:armhf
178s   Re-Instated libdbd-pg-perl:armhf
178s   Re-Instated libdbd-sqlite3-perl:armhf
178s   Re-Instated libbio-db-seqfeature-perl:armhf
178s   Re-Instated libbio-graphics-perl:armhf
178s   Re-Instated libbio-coordinate-perl:armhf
178s   Re-Instated libcgi-session-perl:armhf
178s   Re-Instated libjson-perl:armhf
178s   Re-Instated libexporter-tiny-perl:armhf
178s   Re-Instated liblist-moreutils-xs-perl:armhf
178s   Re-Instated liblist-moreutils-perl:armhf
178s   Re-Instated libstatistics-descriptive-perl:armhf
178s   Re-Instated libhttp-daemon-perl:armhf
178s   Re-Instated libterm-readkey-perl:armhf
178s   Re-Instated sqlite3:armhf
178s   Re-Instated libjs-prototype:armhf
178s   Re-Instated libjs-scriptaculous:armhf
178s   Re-Instated libanyevent-perl:armhf
178s   Re-Instated libanyevent-cachedns-perl:armhf
178s   Re-Instated libcommon-sense-perl:armhf
178s   Re-Instated libanyevent-http-perl:armhf
178s   Re-Instated libstring-approx-perl:armhf
178s   Re-Instated libxml-namespacesupport-perl:armhf
178s   Re-Instated libxml-sax-base-perl:armhf
178s   Re-Instated libxml-sax-perl:armhf
178s   Re-Instated libxml-libxml-perl:armhf
178s   Re-Instated libxml-simple-perl:armhf
178s   Re-Instated libvm-ec2-perl:armhf
178s   Re-Instated gbrowse:armhf
178s Broken autopkgtest-satdep:armhf Depends on genometools-common:armhf < none | 1.6.5+ds-2.2 @un uH >
178s   Considering genometools-common:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated liblua5.1-0:armhf
178s   Re-Instated libpixman-1-0:armhf
178s   Re-Instated libxcb-render0:armhf
178s   Re-Instated libxcb-shm0:armhf
178s   Re-Instated libxrender1:armhf
178s   Re-Instated libcairo2:armhf
178s   Re-Instated fontconfig:armhf
178s   Re-Instated libgraphite2-3:armhf
178s   Re-Instated libharfbuzz0b:armhf
178s   Re-Instated libthai-data:armhf
178s   Re-Instated libdatrie1:armhf
178s   Re-Instated libthai0:armhf
178s   Re-Instated libpango-1.0-0:armhf
178s   Re-Instated libpangoft2-1.0-0:armhf
178s   Re-Instated libpangocairo-1.0-0:armhf
178s   Re-Instated libtre5:armhf
178s   Re-Instated genometools-common:armhf
178s Broken autopkgtest-satdep:armhf Depends on gff2aplot:armhf < none | 2.0-15 @un uH >
178s   Considering gff2aplot:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated gff2aplot:armhf
178s Broken autopkgtest-satdep:armhf Depends on gff2ps:armhf < none | 0.98l-6 @un uH >
178s   Considering gff2ps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated gff2ps:armhf
178s Broken autopkgtest-satdep:armhf Depends on htslib-test:armhf < none | 1.20+ds-1 @un uH >
178s   Considering htslib-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated htslib-test:armhf
178s Broken autopkgtest-satdep:armhf Depends on python3-gffutils:armhf < none | 0.13-1 @un uH >
178s   Considering python3-gffutils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated python3-argcomplete:armhf
178s   Re-Instated python3-argh:armhf
178s   Re-Instated python3-zipp:armhf
178s   Re-Instated python3-importlib-metadata:armhf
178s   Re-Instated python3-pyfaidx:armhf
178s   Re-Instated python3-simplejson:armhf
178s   Re-Instated libblas3:armhf
178s   Re-Instated libgfortran5:armhf
178s   Re-Instated liblapack3:armhf
178s   Re-Instated python3-numpy:armhf
178s   Re-Instated libgomp1:armhf
178s   Re-Instated libimagequant0:armhf
178s   Re-Instated liblcms2-2:armhf
178s   Re-Instated libopenjp2-7:armhf
178s   Re-Instated libraqm0:armhf
178s   Re-Instated libwebpdemux2:armhf
178s   Re-Instated libwebpmux3:armhf
178s   Re-Instated python3-pil:armhf
178s   Re-Instated python3-cairo:armhf
178s   Re-Instated python3-freetype:armhf
178s   Re-Instated python3-rlpycairo:armhf
178s   Re-Instated libfontenc1:armhf
178s   Re-Instated x11-common:armhf
178s   Re-Instated xfonts-encodings:armhf
178s   Re-Instated xfonts-utils:armhf
178s   Re-Instated fonts-urw-base35:armhf
178s   Re-Instated python3-reportlab:armhf
178s   Re-Instated sgml-base:armhf
178s   Re-Instated xml-core:armhf
178s   Re-Instated w3c-sgml-lib:armhf
178s   Re-Instated python3-biopython:armhf
178s   Re-Instated python3-gffutils:armhf
178s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
178s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated zip:armhf
178s   Re-Instated unzip:armhf
178s   Re-Instated libpaper1:armhf
178s   Re-Instated libpaper-utils:armhf
178s   Re-Instated xdg-utils:armhf
178s   Re-Instated libtcl8.6:armhf
178s   Re-Instated libxft2:armhf
178s   Re-Instated libxss1:armhf
178s   Re-Instated libtk8.6:armhf
178s   Re-Instated libice6:armhf
178s   Re-Instated libsm6:armhf
178s   Re-Instated libxt6t64:armhf
178s   Re-Instated r-base-core:armhf
178s   Re-Instated r-bioc-biocgenerics:armhf
178s   Re-Instated r-bioc-s4vectors:armhf
178s   Re-Instated r-bioc-iranges:armhf
178s   Re-Instated r-cran-bitops:armhf
178s   Re-Instated r-cran-rcurl:armhf
178s   Re-Instated r-bioc-genomeinfodbdata:armhf
178s   Re-Instated r-bioc-genomeinfodb:armhf
178s   Re-Instated libc-dev-bin:armhf
178s   Re-Instated linux-libc-dev:armhf
178s   Re-Instated libcrypt-dev:armhf
178s   Re-Instated rpcsvc-proto:armhf
178s   Re-Instated libc6-dev:armhf
178s   Re-Instated zlib1g-dev:armhf
178s   Re-Instated r-bioc-zlibbioc:armhf
178s   Re-Instated r-bioc-xvector:armhf
178s   Re-Instated r-bioc-genomicranges:armhf
178s   Re-Instated r-bioc-biobase:armhf
178s   Re-Instated r-cran-dbi:armhf
178s   Re-Instated r-cran-bit:armhf
178s   Re-Instated r-cran-bit64:armhf
178s   Re-Instated r-cran-rlang:armhf
178s   Re-Instated r-cran-cli:armhf
178s   Re-Instated r-cran-glue:armhf
178s   Re-Instated r-cran-lifecycle:armhf
178s   Re-Instated r-cran-vctrs:armhf
178s   Re-Instated r-cran-blob:armhf
178s   Re-Instated r-cran-fastmap:armhf
178s   Re-Instated r-cran-cachem:armhf
178s   Re-Instated r-cran-memoise:armhf
178s   Re-Instated r-cran-pkgconfig:armhf
178s   Re-Instated r-cran-plogr:armhf
178s   Re-Instated r-cran-cpp11:armhf
178s   Re-Instated r-cran-rsqlite:armhf
178s   Re-Instated r-cran-curl:armhf
178s   Re-Instated r-cran-jsonlite:armhf
178s   Re-Instated r-cran-mime:armhf
178s   Re-Instated r-cran-sys:armhf
178s   Re-Instated r-cran-askpass:armhf
178s   Re-Instated r-cran-openssl:armhf
178s   Re-Instated r-cran-r6:armhf
178s   Re-Instated r-cran-httr:armhf
178s   Re-Instated r-cran-png:armhf
178s   Re-Instated r-cran-crayon:armhf
178s   Re-Instated r-bioc-biostrings:armhf
178s   Re-Instated r-bioc-keggrest:armhf
178s   Re-Instated r-bioc-annotationdbi:armhf
178s   Re-Instated r-bioc-biocio:armhf
178s     Reinst Failed early because of r-bioc-rtracklayer:armhf
178s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
178s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s     Reinst Failed early because of r-bioc-rtracklayer:armhf
178s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
178s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
178s Broken autopkgtest-satdep:armhf Depends on seqan-apps:armhf < none | 2.4.0+dfsg-16 @un uH >
178s   Considering seqan-apps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
178s   Re-Instated seqan-apps:armhf
178s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
178s Done
178s Some packages could not be installed. This may mean that you have
178s requested an impossible situation or if you are using the unstable
178s distribution that some required packages have not yet been created
178s or been moved out of Incoming.
178s The following information may help to resolve the situation:
178s 
178s The following packages have unmet dependencies:
178s  autopkgtest-satdep : Depends: r-bioc-genomicfeatures but it is not going to be installed
178s                       Depends: r-bioc-gviz but it is not going to be installed
178s                       Depends: r-bioc-rhtslib but it is not installable
178s                       Depends: r-bioc-rtracklayer but it is not installable
178s                       Depends: trinityrnaseq-examples but it is not installable
178s E: Unable to correct problems, you have held broken packages.
178s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from oracular-proposed
184s Reading package lists...
184s Building dependency tree...
184s Reading state information...
184s Starting pkgProblemResolver with broken count: 1
185s Starting 2 pkgProblemResolver with broken count: 1
185s Investigating (0) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
185s Broken autopkgtest-satdep:armhf Depends on gffread:armhf < none | 0.12.7-5 @un uH >
185s   Considering gffread:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated libgclib3t64:armhf
185s   Re-Instated gffread:armhf
185s Broken autopkgtest-satdep:armhf Depends on augustus-doc:armhf < none | 3.5.0+dfsg-4build5 @un uH >
185s   Considering augustus-doc:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated augustus-doc:armhf
185s Broken autopkgtest-satdep:armhf Depends on bedtools-test:armhf < none | 2.31.1+dfsg-2 @un uH >
185s   Considering bedtools-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated bedtools-test:armhf
185s Broken autopkgtest-satdep:armhf Depends on emboss-data:armhf < none | 6.6.0+dfsg-12ubuntu2 @un uH >
185s   Considering emboss-data:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated emboss-data:armhf
185s Broken autopkgtest-satdep:armhf Depends on emboss-test:armhf < none | 6.6.0+dfsg-12ubuntu2 @un uH >
185s   Considering emboss-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated emboss-test:armhf
185s Broken autopkgtest-satdep:armhf Depends on gbrowse:armhf < none | 2.56+dfsg-12build3 @un uH >
185s   Considering gbrowse:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated libapr1t64:armhf
185s   Re-Instated libaprutil1t64:armhf
185s   Re-Instated libaprutil1-dbd-sqlite3:armhf
185s   Re-Instated libaprutil1-ldap:armhf
185s   Re-Instated liblua5.4-0:armhf
185s   Re-Instated apache2-bin:armhf
185s   Re-Instated apache2-data:armhf
185s   Re-Instated apache2-utils:armhf
185s   Re-Instated apache2:armhf
185s   Re-Instated libio-string-perl:armhf
185s   Re-Instated libdata-stag-perl:armhf
185s   Re-Instated libbio-perl-perl:armhf
185s   Re-Instated libclass-data-inheritable-perl:armhf
185s   Re-Instated libdevel-stacktrace-perl:armhf
185s   Re-Instated libexception-class-perl:armhf
185s   Re-Instated libtest-deep-perl:armhf
185s   Re-Instated libcapture-tiny-perl:armhf
185s   Re-Instated libalgorithm-diff-perl:armhf
185s   Re-Instated libtext-diff-perl:armhf
185s   Re-Instated libtest-differences-perl:armhf
185s   Re-Instated libsub-uplevel-perl:armhf
185s   Re-Instated libtest-exception-perl:armhf
185s   Re-Instated libtest-warn-perl:armhf
185s   Re-Instated libtest-most-perl:armhf
185s   Re-Instated bioperl:armhf
185s   Re-Instated libfreetype6:armhf
185s   Re-Instated fonts-dejavu-mono:armhf
185s   Re-Instated fonts-dejavu-core:armhf
185s   Re-Instated fontconfig-config:armhf
185s   Re-Instated libfontconfig1:armhf
185s   Re-Instated libsharpyuv0:armhf
185s   Re-Instated libaom3:armhf
185s   Re-Instated libheif-plugin-aomdec:armhf
185s   Re-Instated libde265-0:armhf
185s   Re-Instated libheif-plugin-libde265:armhf
185s   Re-Instated libheif1:armhf
185s   Re-Instated libjpeg-turbo8:armhf
185s   Re-Instated libjpeg8:armhf
185s   Re-Instated libdeflate0:armhf
185s   Re-Instated libjbig0:armhf
185s   Re-Instated liblerc4:armhf
185s   Re-Instated libwebp7:armhf
185s   Re-Instated libtiff6:armhf
185s   Re-Instated libxpm4:armhf
185s   Re-Instated libgd3:armhf
185s   Re-Instated libgd-perl:armhf
185s   Re-Instated libdevel-symdump-perl:armhf
185s   Re-Instated liburi-perl:armhf
185s   Re-Instated libencode-locale-perl:armhf
185s   Re-Instated libtimedate-perl:armhf
185s   Re-Instated libhttp-date-perl:armhf
185s   Re-Instated libfile-listing-perl:armhf
185s   Re-Instated libhtml-tagset-perl:armhf
185s   Re-Instated libhtml-parser-perl:armhf
185s   Re-Instated libhtml-tree-perl:armhf
185s   Re-Instated libclone-perl:armhf
185s   Re-Instated libio-html-perl:armhf
185s   Re-Instated liblwp-mediatypes-perl:armhf
185s   Re-Instated libhttp-message-perl:armhf
185s   Re-Instated libhttp-cookies-perl:armhf
185s   Re-Instated libhttp-negotiate-perl:armhf
185s   Re-Instated perl-openssl-defaults:armhf
185s   Re-Instated libnet-ssleay-perl:armhf
185s   Re-Instated libio-socket-ssl-perl:armhf
185s   Re-Instated libnet-http-perl:armhf
185s   Re-Instated liblwp-protocol-https-perl:armhf
185s   Re-Instated libtry-tiny-perl:armhf
185s   Re-Instated libwww-robotrules-perl:armhf
185s   Re-Instated libwww-perl:armhf
185s   Re-Instated libapache2-mod-perl2:armhf
185s   Re-Instated libdbi-perl:armhf
185s   Re-Instated libapache-dbi-perl:armhf
185s   Re-Instated libbio-db-biofetch-perl:armhf
185s   Re-Instated libcgi-pm-perl:armhf
185s   Re-Instated libbio-db-gff-perl:armhf
185s   Re-Instated libpq5:armhf
185s   Re-Instated libdbd-pg-perl:armhf
185s   Re-Instated libdbd-sqlite3-perl:armhf
185s   Re-Instated libbio-db-seqfeature-perl:armhf
185s   Re-Instated libbio-graphics-perl:armhf
185s   Re-Instated libbio-coordinate-perl:armhf
185s   Re-Instated libcgi-session-perl:armhf
185s   Re-Instated libjson-perl:armhf
185s   Re-Instated libexporter-tiny-perl:armhf
185s   Re-Instated liblist-moreutils-xs-perl:armhf
185s   Re-Instated liblist-moreutils-perl:armhf
185s   Re-Instated libstatistics-descriptive-perl:armhf
185s   Re-Instated libhttp-daemon-perl:armhf
185s   Re-Instated libterm-readkey-perl:armhf
185s   Re-Instated sqlite3:armhf
185s   Re-Instated libjs-prototype:armhf
185s   Re-Instated libjs-scriptaculous:armhf
185s   Re-Instated libanyevent-perl:armhf
185s   Re-Instated libanyevent-cachedns-perl:armhf
185s   Re-Instated libcommon-sense-perl:armhf
185s   Re-Instated libanyevent-http-perl:armhf
185s   Re-Instated libstring-approx-perl:armhf
185s   Re-Instated libxml2:armhf
185s   Re-Instated libxml-namespacesupport-perl:armhf
185s   Re-Instated libxml-sax-base-perl:armhf
185s   Re-Instated libxml-sax-perl:armhf
185s   Re-Instated libxml-libxml-perl:armhf
185s   Re-Instated libxml-simple-perl:armhf
185s   Re-Instated libvm-ec2-perl:armhf
185s   Re-Instated gbrowse:armhf
185s Broken autopkgtest-satdep:armhf Depends on genometools-common:armhf < none | 1.6.5+ds-2.2 @un uH >
185s   Considering genometools-common:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated liblua5.1-0:armhf
185s   Re-Instated libpixman-1-0:armhf
185s   Re-Instated libxcb-render0:armhf
185s   Re-Instated libxcb-shm0:armhf
185s   Re-Instated libxrender1:armhf
185s   Re-Instated libcairo2:armhf
185s   Re-Instated fontconfig:armhf
185s   Re-Instated libgraphite2-3:armhf
185s   Re-Instated libharfbuzz0b:armhf
185s   Re-Instated libthai-data:armhf
185s   Re-Instated libdatrie1:armhf
185s   Re-Instated libthai0:armhf
185s   Re-Instated libpango-1.0-0:armhf
185s   Re-Instated libpangoft2-1.0-0:armhf
185s   Re-Instated libpangocairo-1.0-0:armhf
185s   Re-Instated libtre5:armhf
185s   Re-Instated genometools-common:armhf
185s Broken autopkgtest-satdep:armhf Depends on gff2aplot:armhf < none | 2.0-15 @un uH >
185s   Considering gff2aplot:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated gff2aplot:armhf
185s Broken autopkgtest-satdep:armhf Depends on gff2ps:armhf < none | 0.98l-6 @un uH >
185s   Considering gff2ps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated gff2ps:armhf
185s Broken autopkgtest-satdep:armhf Depends on htslib-test:armhf < none | 1.20+ds-1 @un uH >
185s   Considering htslib-test:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated htslib-test:armhf
185s Broken autopkgtest-satdep:armhf Depends on python3-gffutils:armhf < none | 0.13-1 @un uH >
185s   Considering python3-gffutils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated python3-argcomplete:armhf
185s   Re-Instated python3-argh:armhf
185s   Re-Instated python3-zipp:armhf
185s   Re-Instated python3-importlib-metadata:armhf
185s   Re-Instated python3-pyfaidx:armhf
185s   Re-Instated python3-simplejson:armhf
185s   Re-Instated libblas3:armhf
185s   Re-Instated gcc-14-base:armhf
185s   Re-Instated libgfortran5:armhf
185s   Re-Instated liblapack3:armhf
185s   Re-Instated python3-numpy:armhf
185s   Re-Instated libgomp1:armhf
185s   Re-Instated libimagequant0:armhf
185s   Re-Instated liblcms2-2:armhf
185s   Re-Instated libopenjp2-7:armhf
185s   Re-Instated libraqm0:armhf
185s   Re-Instated libwebpdemux2:armhf
185s   Re-Instated libwebpmux3:armhf
185s   Re-Instated python3-pil:armhf
185s   Re-Instated python3-cairo:armhf
185s   Re-Instated python3-freetype:armhf
185s   Re-Instated python3-rlpycairo:armhf
185s   Re-Instated libfontenc1:armhf
185s   Re-Instated x11-common:armhf
185s   Re-Instated xfonts-encodings:armhf
185s   Re-Instated xfonts-utils:armhf
185s   Re-Instated fonts-urw-base35:armhf
185s   Re-Instated python3-reportlab:armhf
185s   Re-Instated sgml-base:armhf
185s   Re-Instated xml-core:armhf
185s   Re-Instated w3c-sgml-lib:armhf
185s   Re-Instated python3-biopython:armhf
185s   Re-Instated python3-gffutils:armhf
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
185s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated zip:armhf
185s   Re-Instated unzip:armhf
185s   Re-Instated libpaper1:armhf
185s   Re-Instated libpaper-utils:armhf
185s   Re-Instated xdg-utils:armhf
185s   Re-Instated libtcl8.6:armhf
185s   Re-Instated libxft2:armhf
185s   Re-Instated libxss1:armhf
185s   Re-Instated libtk8.6:armhf
185s   Re-Instated libice6:armhf
185s   Re-Instated libsm6:armhf
185s   Re-Instated libxt6t64:armhf
185s   Re-Instated r-base-core:armhf
185s   Re-Instated r-bioc-biocgenerics:armhf
185s   Re-Instated r-bioc-s4vectors:armhf
185s   Re-Instated r-bioc-iranges:armhf
185s   Re-Instated r-cran-bitops:armhf
185s   Re-Instated r-cran-rcurl:armhf
185s   Re-Instated r-bioc-genomeinfodbdata:armhf
185s   Re-Instated r-bioc-genomeinfodb:armhf
185s   Re-Instated libc6:armhf
185s   Re-Instated libc-dev-bin:armhf
185s   Re-Instated linux-libc-dev:armhf
185s   Re-Instated libcrypt-dev:armhf
185s   Re-Instated rpcsvc-proto:armhf
185s   Re-Instated libc6-dev:armhf
185s   Re-Instated zlib1g-dev:armhf
185s   Re-Instated r-bioc-zlibbioc:armhf
185s   Re-Instated r-bioc-xvector:armhf
185s   Re-Instated r-bioc-genomicranges:armhf
185s   Re-Instated r-bioc-biobase:armhf
185s   Re-Instated r-cran-dbi:armhf
185s   Re-Instated r-cran-bit:armhf
185s   Re-Instated r-cran-bit64:armhf
185s   Re-Instated r-cran-rlang:armhf
185s   Re-Instated r-cran-cli:armhf
185s   Re-Instated r-cran-glue:armhf
185s   Re-Instated r-cran-lifecycle:armhf
185s   Re-Instated r-cran-vctrs:armhf
185s   Re-Instated r-cran-blob:armhf
185s   Re-Instated r-cran-fastmap:armhf
185s   Re-Instated r-cran-cachem:armhf
185s   Re-Instated r-cran-memoise:armhf
185s   Re-Instated r-cran-pkgconfig:armhf
185s   Re-Instated r-cran-plogr:armhf
185s   Re-Instated r-cran-cpp11:armhf
185s   Re-Instated r-cran-rsqlite:armhf
185s   Re-Instated r-cran-curl:armhf
185s   Re-Instated r-cran-jsonlite:armhf
185s   Re-Instated r-cran-mime:armhf
185s   Re-Instated r-cran-sys:armhf
185s   Re-Instated r-cran-askpass:armhf
185s   Re-Instated r-cran-openssl:armhf
185s   Re-Instated r-cran-r6:armhf
185s   Re-Instated r-cran-httr:armhf
185s   Re-Instated r-cran-png:armhf
185s   Re-Instated r-cran-crayon:armhf
185s   Re-Instated r-bioc-biostrings:armhf
185s   Re-Instated r-bioc-keggrest:armhf
185s   Re-Instated r-bioc-annotationdbi:armhf
185s   Re-Instated r-bioc-biocio:armhf
185s     Reinst Failed early because of r-bioc-rtracklayer:armhf
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
185s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s     Reinst Failed early because of r-bioc-rtracklayer:armhf
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on seqan-apps:armhf < none | 2.4.0+dfsg-16 @un uH >
185s   Considering seqan-apps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s   Re-Instated seqan-apps:armhf
185s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
185s Investigating (0) libgcc-s1:armhf < 14.1.0-1ubuntu1 | 14.1.0-2ubuntu1 @ii umH Ib >
185s Broken libgcc-s1:armhf Depends on gcc-14-base:armhf < 14.1.0-1ubuntu1 -> 14.1.0-2ubuntu1 @ii umU > (= 14.1.0-1ubuntu1)
185s   Considering gcc-14-base:armhf 144 as a solution to libgcc-s1:armhf 5677
185s   Added gcc-14-base:armhf to the remove list
185s   Fixing libgcc-s1:armhf via keep of gcc-14-base:armhf
185s Investigating (0) libgomp1:armhf < none -> 14.1.0-2ubuntu1 @un uN Ib >
185s Broken libgomp1:armhf Depends on gcc-14-base:armhf < 14.1.0-1ubuntu1 | 14.1.0-2ubuntu1 @ii umH > (= 14.1.0-2ubuntu1)
185s   Considering gcc-14-base:armhf 144 as a solution to libgomp1:armhf 0
185s   Holding Back libgomp1:armhf rather than change gcc-14-base:armhf
185s Investigating (0) libgfortran5:armhf < none -> 14.1.0-2ubuntu1 @un uN Ib >
185s Broken libgfortran5:armhf Depends on gcc-14-base:armhf < 14.1.0-1ubuntu1 | 14.1.0-2ubuntu1 @ii umH > (= 14.1.0-2ubuntu1)
185s   Considering gcc-14-base:armhf 144 as a solution to libgfortran5:armhf 0
185s   Holding Back libgfortran5:armhf rather than change gcc-14-base:armhf
185s Investigating (1) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
185s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
185s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
185s Investigating (1) seqan-apps:armhf < none -> 2.4.0+dfsg-16 @un uN Ib >
185s Broken seqan-apps:armhf Depends on libgomp1:armhf < none | 14.1.0-2ubuntu1 @un uH > (>= 6)
185s   Considering libgomp1:armhf 0 as a solution to seqan-apps:armhf 1
185s   Holding Back seqan-apps:armhf rather than change libgomp1:armhf
185s Investigating (1) libimagequant0:armhf < none -> 2.18.0-1build1 @un uN Ib >
185s Broken libimagequant0:armhf Depends on libgomp1:armhf < none | 14.1.0-2ubuntu1 @un uH > (>= 4.9)
185s   Considering libgomp1:armhf 0 as a solution to libimagequant0:armhf 0
185s   Holding Back libimagequant0:armhf rather than change libgomp1:armhf
185s Investigating (1) liblapack3:armhf < none -> 3.12.0-3build1 @un uN Ib >
185s Broken liblapack3:armhf Depends on libgfortran5:armhf < none | 14.1.0-2ubuntu1 @un uH > (>= 8)
185s   Considering libgfortran5:armhf 0 as a solution to liblapack3:armhf 0
185s   Holding Back liblapack3:armhf rather than change libgfortran5:armhf
185s Investigating (1) r-base-core:armhf < none -> 4.4.1-1 @un uN Ib >
185s Broken r-base-core:armhf Depends on libgomp1:armhf < none | 14.1.0-2ubuntu1 @un uH > (>= 4.9)
185s   Considering libgomp1:armhf 0 as a solution to r-base-core:armhf 0
185s   Holding Back r-base-core:armhf rather than change libgomp1:armhf
185s Investigating (1) r-cran-pkgconfig:armhf < none -> 2.0.3-2build1 @un uN Ib >
185s Broken r-cran-pkgconfig:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.0.0.20200528-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-pkgconfig:armhf 0
185s   Holding Back r-cran-pkgconfig:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-bit:armhf < none -> 4.0.5-1 @un uN Ib >
185s Broken r-cran-bit:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.2.2.20221110-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-bit:armhf 0
185s   Holding Back r-cran-bit:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-dbi:armhf < none -> 1.2.3-1 @un uN Ib >
185s Broken r-cran-dbi:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-dbi:armhf 0
185s   Holding Back r-cran-dbi:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-r6:armhf < none -> 2.5.1-1 @un uN Ib >
185s Broken r-cran-r6:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.1.1-2)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-r6:armhf 0
185s   Holding Back r-cran-r6:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-cli:armhf < none -> 3.6.2-1 @un uN Ib >
185s Broken r-cran-cli:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-cli:armhf 0
185s   Holding Back r-cran-cli:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-curl:armhf < none -> 5.2.1+dfsg-1 @un uN Ib >
185s Broken r-cran-curl:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-curl:armhf 0
185s   Holding Back r-cran-curl:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-bioc-biocio:armhf < none -> 1.12.0+dfsg-1 @un uN Ib >
185s Broken r-bioc-biocio:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-biocio:armhf 0
185s   Holding Back r-bioc-biocio:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-bioc-biobase:armhf < none -> 2.62.0-1 @un uN Ib >
185s Broken r-bioc-biobase:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-biobase:armhf 0
185s   Holding Back r-bioc-biobase:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-bitops:armhf < none -> 1.0-7-1 @un uN Ib >
185s Broken r-cran-bitops:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.1.1-2)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-bitops:armhf 0
185s   Holding Back r-cran-bitops:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-jsonlite:armhf < none -> 1.8.8+dfsg-1 @un uN Ib >
185s Broken r-cran-jsonlite:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-jsonlite:armhf 0
185s   Holding Back r-cran-jsonlite:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-httr:armhf < none -> 1.4.7+dfsg-1 @un uN Ib >
185s Broken r-cran-httr:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-httr:armhf 0
185s   Holding Back r-cran-httr:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-askpass:armhf < none -> 1.2.0-1 @un uN Ib >
185s Broken r-cran-askpass:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-askpass:armhf 0
185s   Holding Back r-cran-askpass:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-fastmap:armhf < none -> 1.1.1-1 @un uN Ib >
185s Broken r-cran-fastmap:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.2.2.20221110-2build1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-fastmap:armhf 0
185s   Holding Back r-cran-fastmap:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-bit64:armhf < none -> 4.0.5-1 @un uN Ib >
185s Broken r-cran-bit64:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.0.2-1build1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-bit64:armhf 0
185s   Holding Back r-cran-bit64:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-plogr:armhf < none -> 0.2.0-3build1 @un uN Ib >
185s Broken r-cran-plogr:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.0.0.20200528-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-plogr:armhf 0
185s   Holding Back r-cran-plogr:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-png:armhf < none -> 0.1-8-1build2 @un uN Ib >
185s Broken r-cran-png:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-png:armhf 0
185s   Holding Back r-cran-png:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-rlang:armhf < none -> 1.1.4-1 @un uN Ib >
185s Broken r-cran-rlang:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-rlang:armhf 0
185s   Holding Back r-cran-rlang:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-sys:armhf < none -> 3.4.2-1 @un uN Ib >
185s Broken r-cran-sys:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.3.1-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-sys:armhf 0
185s   Holding Back r-cran-sys:armhf rather than change r-base-core:armhf
185s Investigating (1) r-cran-cpp11:armhf < none -> 0.4.7-1 @un uN Ib >
185s Broken r-cran-cpp11:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-cpp11:armhf 0
185s   Holding Back r-cran-cpp11:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-cachem:armhf < none -> 1.0.8-1 @un uN Ib >
185s Broken r-cran-cachem:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.3.0-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-cachem:armhf 0
185s   Holding Back r-cran-cachem:armhf rather than change r-base-core:armhf
185s Investigating (1) r-bioc-genomeinfodbdata:armhf < none -> 1.2.11-2 @un uN Ib >
185s Broken r-bioc-genomeinfodbdata:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-genomeinfodbdata:armhf 0
185s   Holding Back r-bioc-genomeinfodbdata:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-openssl:armhf < none -> 2.1.1+dfsg-2build2 @un uN Ib >
185s Broken r-cran-openssl:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-openssl:armhf 0
185s   Holding Back r-cran-openssl:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-bioc-annotationdbi:armhf < none -> 1.64.1-1 @un uN Ib >
185s Broken r-bioc-annotationdbi:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-annotationdbi:armhf 0
185s   Holding Back r-bioc-annotationdbi:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-lifecycle:armhf < none -> 1.0.4+dfsg-1 @un uN Ib >
185s Broken r-cran-lifecycle:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-lifecycle:armhf 0
185s   Holding Back r-cran-lifecycle:armhf rather than change r-api-4.0:armhf
185s Investigating (1) r-cran-rsqlite:armhf < none -> 2.3.7-1 @un uN Ib >
185s Broken r-cran-rsqlite:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-rsqlite:armhf 0
185s   Holding Back r-cran-rsqlite:armhf rather than change r-api-4.0:armhf
185s Investigating (2) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
185s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
185s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on seqan-apps:armhf < none | 2.4.0+dfsg-16 @un uH >
185s   Considering seqan-apps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
185s Investigating (2) r-cran-vctrs:armhf < none -> 0.6.5-1 @un uN Ib >
185s Broken r-cran-vctrs:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-vctrs:armhf 0
185s   Holding Back r-cran-vctrs:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-xvector:armhf < none -> 0.42.0-1 @un uN Ib >
185s Broken r-bioc-xvector:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-xvector:armhf 0
185s   Holding Back r-bioc-xvector:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-keggrest:armhf < none -> 1.42.0+dfsg-1 @un uN Ib >
185s Broken r-bioc-keggrest:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-keggrest:armhf 0
185s   Holding Back r-bioc-keggrest:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-cran-memoise:armhf < none -> 2.0.1-1 @un uN Ib >
185s Broken r-cran-memoise:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.1.2-1ubuntu1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-memoise:armhf 0
185s   Holding Back r-cran-memoise:armhf rather than change r-base-core:armhf
185s Investigating (2) r-bioc-zlibbioc:armhf < none -> 1.48.0+dfsg-1 @un uN Ib >
185s Broken r-bioc-zlibbioc:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-zlibbioc:armhf 0
185s   Holding Back r-bioc-zlibbioc:armhf rather than change r-api-4.0:armhf
185s Investigating (2) python3-pil:armhf < none -> 10.3.0-2 @un uN Ib >
185s Broken python3-pil:armhf Depends on libimagequant0:armhf < none | 2.18.0-1build1 @un uH > (>= 2.11.10)
185s   Considering libimagequant0:armhf 0 as a solution to python3-pil:armhf 0
185s   Holding Back python3-pil:armhf rather than change libimagequant0:armhf
185s Investigating (2) r-cran-mime:armhf < none -> 0.12-2 @un uN Ib >
185s Broken r-cran-mime:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-mime:armhf 0
185s   Holding Back r-cran-mime:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-s4vectors:armhf < none -> 0.40.2+dfsg-1 @un uN Ib >
185s Broken r-bioc-s4vectors:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-s4vectors:armhf 0
185s   Holding Back r-bioc-s4vectors:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-cran-crayon:armhf < none -> 1.5.2-1 @un uN Ib >
185s Broken r-cran-crayon:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.2.2-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-crayon:armhf 0
185s   Holding Back r-cran-crayon:armhf rather than change r-base-core:armhf
185s Investigating (2) r-bioc-biocgenerics:armhf < none -> 0.48.1-2 @un uN Ib >
185s Broken r-bioc-biocgenerics:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-biocgenerics:armhf 0
185s   Holding Back r-bioc-biocgenerics:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-cran-blob:armhf < none -> 1.2.4-1 @un uN Ib >
185s Broken r-cran-blob:armhf Depends on r-base-core:armhf < none | 4.4.1-1 @un uH > (>= 4.3.0-1)
185s   Considering r-base-core:armhf 0 as a solution to r-cran-blob:armhf 0
185s   Holding Back r-cran-blob:armhf rather than change r-base-core:armhf
185s Investigating (2) r-cran-rcurl:armhf < none -> 1.98-1.14+dfsg-1build2 @un uN Ib >
185s Broken r-cran-rcurl:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-rcurl:armhf 0
185s   Holding Back r-cran-rcurl:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-iranges:armhf < none -> 2.36.0-1 @un uN Ib >
185s Broken r-bioc-iranges:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-iranges:armhf 0
185s   Holding Back r-bioc-iranges:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-cran-glue:armhf < none -> 1.7.0-1 @un uN Ib >
185s Broken r-cran-glue:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-cran-glue:armhf 0
185s   Holding Back r-cran-glue:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-genomicranges:armhf < none -> 1.54.1+dfsg-1 @un uN Ib >
185s Broken r-bioc-genomicranges:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-genomicranges:armhf 0
185s   Holding Back r-bioc-genomicranges:armhf rather than change r-api-4.0:armhf
185s Investigating (2) python3-numpy:armhf < none -> 1:1.26.4+ds-10 @un uN Ib >
185s Broken python3-numpy:armhf Depends on liblapack3:armhf < none | 3.12.0-3build1 @un uH >
185s   Considering liblapack3:armhf 0 as a solution to python3-numpy:armhf 0
185s   Holding Back python3-numpy:armhf rather than change liblapack3:armhf
185s Broken python3-numpy:armhf Depends on liblapack.so.3:armhf < none @un H >
185s   Considering libopenblas0-serial:armhf 0 as a solution to python3-numpy:armhf 0
185s   Holding Back python3-numpy:armhf rather than change liblapack.so.3:armhf
185s   Or group keep for python3-numpy:armhf
185s Investigating (2) r-bioc-genomeinfodb:armhf < none -> 1.38.6+dfsg-1 @un uN Ib >
185s Broken r-bioc-genomeinfodb:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-genomeinfodb:armhf 0
185s   Holding Back r-bioc-genomeinfodb:armhf rather than change r-api-4.0:armhf
185s Investigating (2) r-bioc-biostrings:armhf < none -> 2.70.3+dfsg-1 @un uN Ib >
185s Broken r-bioc-biostrings:armhf Depends on r-api-4.0:armhf < none @un H >
185s   Considering r-base-core:armhf 0 as a solution to r-bioc-biostrings:armhf 0
185s   Holding Back r-bioc-biostrings:armhf rather than change r-api-4.0:armhf
185s Investigating (2) python3-biopython:armhf < none -> 1.83+dfsg1-3 @un uN Ib >
185s Broken python3-biopython:armhf Depends on python3-numpy:armhf < none | 1:1.26.4+ds-10 @un uH > (>= 1:1.25.0)
185s   Considering python3-numpy:armhf 0 as a solution to python3-biopython:armhf 0
185s   Holding Back python3-biopython:armhf rather than change python3-numpy:armhf
185s Investigating (2) python3-reportlab:armhf < none -> 4.2.2-1 @un uN Ib >
185s Broken python3-reportlab:armhf Depends on python3-pil:armhf < none | 10.3.0-2 @un uH >
185s   Considering python3-pil:armhf 0 as a solution to python3-reportlab:armhf 0
185s   Holding Back python3-reportlab:armhf rather than change python3-pil:armhf
185s Investigating (3) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
185s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
185s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on seqan-apps:armhf < none | 2.4.0+dfsg-16 @un uH >
185s   Considering seqan-apps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
185s Investigating (3) python3-gffutils:armhf < none -> 0.13-1 @un uN Ib >
185s Broken python3-gffutils:armhf Depends on python3-biopython:armhf < none | 1.83+dfsg1-3 @un uH >
185s   Considering python3-biopython:armhf 0 as a solution to python3-gffutils:armhf 1
185s   Holding Back python3-gffutils:armhf rather than change python3-biopython:armhf
185s Investigating (4) autopkgtest-satdep:armhf < none -> 0 @un puN Ib >
185s Broken autopkgtest-satdep:armhf Depends on python3-gffutils:armhf < none | 0.13-1 @un uH >
185s   Considering python3-gffutils:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-genomicfeatures:armhf < none | 1.54.3+dfsg-1 @un uH >
185s   Considering r-bioc-genomicfeatures:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-gviz:armhf < none | 1.46.1+dfsg-1 @un uH >
185s   Considering r-bioc-gviz:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rhtslib:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on r-bioc-rtracklayer:armhf < none @un H >
185s Broken autopkgtest-satdep:armhf Depends on seqan-apps:armhf < none | 2.4.0+dfsg-16 @un uH >
185s   Considering seqan-apps:armhf 1 as a solution to autopkgtest-satdep:armhf 9998
185s Broken autopkgtest-satdep:armhf Depends on trinityrnaseq-examples:armhf < none @un H >
185s Done
185s Some packages could not be installed. This may mean that you have
185s requested an impossible situation or if you are using the unstable
185s distribution that some required packages have not yet been created
185s or been moved out of Incoming.
185s The following information may help to resolve the situation:
185s 
185s The following packages have unmet dependencies:
185s  autopkgtest-satdep : Depends: python3-gffutils but it is not going to be installed
185s                       Depends: r-bioc-genomicfeatures but it is not going to be installed
185s                       Depends: r-bioc-gviz but it is not going to be installed
185s                       Depends: r-bioc-rhtslib but it is not installable
185s                       Depends: r-bioc-rtracklayer but it is not installable
185s                       Depends: seqan-apps but it is not going to be installed
185s                       Depends: trinityrnaseq-examples but it is not installable
185s E: Unable to correct problems, you have held broken packages.
185s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Package r-bioc-rtracklayer is not available, but is referred to by another package.
187s This may mean that the package is missing, has been obsoleted, or
187s is only available from another source
187s 
187s E: Unable to locate package r-bioc-rhtslib
187s E: Package 'r-bioc-rtracklayer' has no installation candidate
187s E: Unable to locate package trinityrnaseq-examples
187s run-tests            FAIL badpkg
187s blame: gffread
187s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
187s autopkgtest [11:53:49]: @@@@@@@@@@@@@@@@@@@@ summary
187s run-tests            FAIL badpkg
187s blame: gffread
187s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.