0s autopkgtest [16:37:43]: starting date and time: 2024-07-12 16:37:43+0000 0s autopkgtest [16:37:43]: git checkout: fd3bed09 nova: allow more retries for quota issues 0s autopkgtest [16:37:43]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6o11nnz2/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:glibc --apt-upgrade fastdnaml --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.39-3.1ubuntu3 -- lxd -r lxd-armhf-10.145.243.183 lxd-armhf-10.145.243.183:autopkgtest/ubuntu/oracular/armhf 53s autopkgtest [16:38:36]: testbed dpkg architecture: armhf 55s autopkgtest [16:38:38]: testbed apt version: 2.9.6 55s autopkgtest [16:38:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [126 kB] 63s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [8548 B] 63s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [46.6 kB] 63s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2576 B] 63s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [343 kB] 63s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [58.3 kB] 63s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf c-n-f Metadata [1444 B] 63s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf Packages [1368 B] 63s Get:9 http://ftpmaster.internal/ubuntu oracular-proposed/restricted armhf c-n-f Metadata [120 B] 63s Get:10 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [303 kB] 63s Get:11 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf c-n-f Metadata [6176 B] 63s Get:12 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1448 B] 63s Get:13 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf c-n-f Metadata [120 B] 65s Fetched 899 kB in 1s (1210 kB/s) 65s Reading package lists... 83s tee: /proc/self/fd/2: Permission denied 105s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 105s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 106s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s Calculating upgrade... 107s The following packages will be upgraded: 107s inetutils-telnet libc-bin libc6 libssl3t64 locales openssh-client 107s openssh-server openssh-sftp-server openssl telnet 107s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 11.9 MB of archives. 107s After this operation, 285 kB of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc6 armhf 2.39-3.1ubuntu3 [2825 kB] 108s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf libc-bin armhf 2.39-3.1ubuntu3 [527 kB] 108s Get:3 http://ftpmaster.internal/ubuntu oracular/main armhf libssl3t64 armhf 3.2.2-1ubuntu1 [1729 kB] 108s Get:4 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-sftp-server armhf 1:9.6p1-3ubuntu17 [35.6 kB] 108s Get:5 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-server armhf 1:9.6p1-3ubuntu17 [502 kB] 108s Get:6 http://ftpmaster.internal/ubuntu oracular/main armhf openssh-client armhf 1:9.6p1-3ubuntu17 [888 kB] 108s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf locales all 2.39-3.1ubuntu3 [4220 kB] 108s Get:8 http://ftpmaster.internal/ubuntu oracular/main armhf openssl armhf 3.2.2-1ubuntu1 [1095 kB] 108s Get:9 http://ftpmaster.internal/ubuntu oracular/main armhf inetutils-telnet armhf 2:2.5-5ubuntu1 [94.4 kB] 108s Get:10 http://ftpmaster.internal/ubuntu oracular/main armhf telnet all 0.17+2.5-5ubuntu1 [3688 B] 108s Preconfiguring packages ... 108s Fetched 11.9 MB in 1s (12.4 MB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.39-3.1ubuntu3_armhf.deb ... 109s Unpacking libc6:armhf (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 109s Setting up libc6:armhf (2.39-3.1ubuntu3) ... 109s Error: Could not restart systemd, systemd binary not working 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.39-3.1ubuntu3_armhf.deb ... 109s Unpacking libc-bin (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 109s Setting up libc-bin (2.39-3.1ubuntu3) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 109s Preparing to unpack .../libssl3t64_3.2.2-1ubuntu1_armhf.deb ... 109s Unpacking libssl3t64:armhf (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 109s Setting up libssl3t64:armhf (3.2.2-1ubuntu1) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58437 files and directories currently installed.) 109s Preparing to unpack .../0-openssh-sftp-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 109s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 109s Preparing to unpack .../1-openssh-server_1%3a9.6p1-3ubuntu17_armhf.deb ... 109s Unpacking openssh-server (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 109s Preparing to unpack .../2-openssh-client_1%3a9.6p1-3ubuntu17_armhf.deb ... 109s Unpacking openssh-client (1:9.6p1-3ubuntu17) over (1:9.6p1-3ubuntu15) ... 109s Preparing to unpack .../3-locales_2.39-3.1ubuntu3_all.deb ... 109s Unpacking locales (2.39-3.1ubuntu3) over (2.39-0ubuntu9) ... 110s Preparing to unpack .../4-openssl_3.2.2-1ubuntu1_armhf.deb ... 110s Unpacking openssl (3.2.2-1ubuntu1) over (3.2.1-3ubuntu1) ... 110s Preparing to unpack .../5-inetutils-telnet_2%3a2.5-5ubuntu1_armhf.deb ... 110s Unpacking inetutils-telnet (2:2.5-5ubuntu1) over (2:2.5-3ubuntu4) ... 110s Preparing to unpack .../6-telnet_0.17+2.5-5ubuntu1_all.deb ... 110s Unpacking telnet (0.17+2.5-5ubuntu1) over (0.17+2.5-3ubuntu4) ... 110s Setting up openssh-client (1:9.6p1-3ubuntu17) ... 110s Setting up inetutils-telnet (2:2.5-5ubuntu1) ... 110s Setting up locales (2.39-3.1ubuntu3) ... 110s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up openssl (3.2.2-1ubuntu1) ... 112s Installing new version of config file /etc/ssl/openssl.cnf ... 112s Setting up openssh-sftp-server (1:9.6p1-3ubuntu17) ... 112s Setting up telnet (0.17+2.5-5ubuntu1) ... 112s Setting up openssh-server (1:9.6p1-3ubuntu17) ... 112s Installing new version of config file /etc/pam.d/sshd ... 114s Processing triggers for ufw (0.36.2-6) ... 114s Processing triggers for systemd (256-1ubuntu1) ... 114s Processing triggers for man-db (2.12.1-2) ... 115s Processing triggers for libc-bin (2.39-3.1ubuntu3) ... 115s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [16:39:41]: rebooting testbed after setup commands that affected boot 187s autopkgtest [16:40:50]: testbed running kernel: Linux 6.5.0-41-generic #41~22.04.2-Ubuntu SMP PREEMPT_DYNAMIC Mon Jun 3 16:28:24 UTC 2 215s autopkgtest [16:41:18]: @@@@@@@@@@@@@@@@@@@@ apt-source fastdnaml 225s Get:1 http://ftpmaster.internal/ubuntu oracular/universe fastdnaml 1.2.2-16 (dsc) [1407 B] 225s Get:2 http://ftpmaster.internal/ubuntu oracular/universe fastdnaml 1.2.2-16 (tar) [70.0 kB] 225s Get:3 http://ftpmaster.internal/ubuntu oracular/universe fastdnaml 1.2.2-16 (diff) [8544 B] 225s gpgv: Signature made Sun Apr 7 09:24:25 2024 UTC 225s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 225s gpgv: Can't check signature: No public key 225s dpkg-source: warning: cannot verify inline signature for ./fastdnaml_1.2.2-16.dsc: no acceptable signature found 225s autopkgtest [16:41:28]: testing package fastdnaml version 1.2.2-16 227s autopkgtest [16:41:30]: build not needed 229s autopkgtest [16:41:32]: test Makefile: preparing testbed 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s Starting pkgProblemResolver with broken count: 0 240s Starting 2 pkgProblemResolver with broken count: 0 240s Done 241s The following additional packages will be installed: 241s fastdnaml 241s Suggested packages: 241s phylip 241s The following NEW packages will be installed: 241s autopkgtest-satdep fastdnaml 241s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 241s Need to get 56.8 kB/57.5 kB of archives. 241s After this operation, 220 kB of additional disk space will be used. 241s Get:1 /tmp/autopkgtest.qB82ZE/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [704 B] 241s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf fastdnaml armhf 1.2.2-16 [56.8 kB] 241s Fetched 56.8 kB in 0s (187 kB/s) 241s Selecting previously unselected package fastdnaml. 241s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58436 files and directories currently installed.) 241s Preparing to unpack .../fastdnaml_1.2.2-16_armhf.deb ... 241s Unpacking fastdnaml (1.2.2-16) ... 241s Selecting previously unselected package autopkgtest-satdep. 241s Preparing to unpack .../1-autopkgtest-satdep.deb ... 241s Unpacking autopkgtest-satdep (0) ... 242s Setting up fastdnaml (1.2.2-16) ... 242s Setting up autopkgtest-satdep (0) ... 242s Processing triggers for man-db (2.12.1-2) ... 253s (Reading database ... 58516 files and directories currently installed.) 253s Removing autopkgtest-satdep (0) ... 259s autopkgtest [16:42:02]: test Makefile: [----------------------- 261s cat /usr/share/doc/fastdnaml/examples/tests/fastdnaml.data | fastDNAml-util printdata | fastDNAml > fastdnaml.out ; fastDNAml-util clean_checkpoints 261s cat /usr/share/doc/fastdnaml/examples/tests/fastdnaml.data | fastDNAml-util printdata > fastdnaml.data.tmp; fastDNAml-util fastDNAml_boot -out -boots 2 -max 2 fastdnaml.data.tmp 2 261s /tmp/autopkgtest.qB82ZE/wrapper.sh: Killing leaked background processes: 1057 261s PID TTY STAT TIME COMMAND 261s 1057 ? S 0:00 /bin/sh /usr/lib/fastdnaml/bin/fastDNAml_boot -boots 1 -max 2 -out -nice 10 fastdnaml.data.tmp 2 261s autopkgtest [16:42:04]: test Makefile: -----------------------] 265s autopkgtest [16:42:08]: test Makefile: - - - - - - - - - - results - - - - - - - - - - 265s Makefile PASS 269s autopkgtest [16:42:12]: @@@@@@@@@@@@@@@@@@@@ summary 269s Makefile PASS