0s autopkgtest [06:55:48]: starting date and time: 2024-05-29 06:55:48+0000 0s autopkgtest [06:55:48]: git checkout: d60bd36 autopkgtest-build-lxd: Add missing remote prefix in get_boot_id(). 0s autopkgtest [06:55:48]: host juju-7f2275-prod-proposed-migration-environment-9; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ed5zbr6x/out --timeout-copy=6000 --setup-commands 'ln -s /dev/null /etc/systemd/system/bluetooth.service; printf "http_proxy=http://squid.internal:3128\nhttps_proxy=http://squid.internal:3128\nno_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com\n" >> /etc/environment' --apt-pocket=proposed=src:dazzdb --apt-upgrade daligner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dazzdb/1.0+git20240115.be65e59-1 -- lxd -r lxd-armhf-10.145.243.252 lxd-armhf-10.145.243.252:autopkgtest/ubuntu/oracular/armhf 34s autopkgtest [06:56:22]: testbed dpkg architecture: armhf 36s autopkgtest [06:56:24]: testbed apt version: 2.9.3 36s autopkgtest [06:56:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 46s Get:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease [73.9 kB] 46s Get:2 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse Sources [2568 B] 46s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/restricted Sources [1964 B] 46s Get:4 http://ftpmaster.internal/ubuntu oracular-proposed/universe Sources [508 kB] 47s Get:5 http://ftpmaster.internal/ubuntu oracular-proposed/main Sources [58.2 kB] 47s Get:6 http://ftpmaster.internal/ubuntu oracular-proposed/main armhf Packages [99.0 kB] 47s Get:7 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf Packages [488 kB] 47s Get:8 http://ftpmaster.internal/ubuntu oracular-proposed/multiverse armhf Packages [1392 B] 47s Fetched 1233 kB in 2s (560 kB/s) 47s Reading package lists... 67s tee: /proc/self/fd/2: Permission denied 91s Hit:1 http://ftpmaster.internal/ubuntu oracular-proposed InRelease 91s Hit:2 http://ftpmaster.internal/ubuntu oracular InRelease 91s Hit:3 http://ftpmaster.internal/ubuntu oracular-updates InRelease 91s Hit:4 http://ftpmaster.internal/ubuntu oracular-security InRelease 93s Reading package lists... 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s Calculating upgrade... 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s autopkgtest [06:57:27]: rebooting testbed after setup commands that affected boot 143s autopkgtest [06:58:11]: testbed running kernel: Linux 6.5.0-35-generic #35~22.04.1-Ubuntu SMP PREEMPT_DYNAMIC Tue May 7 11:19:33 UTC 2 170s autopkgtest [06:58:38]: @@@@@@@@@@@@@@@@@@@@ apt-source daligner 191s Get:1 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (dsc) [2287 B] 191s Get:2 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (tar) [128 kB] 191s Get:3 http://ftpmaster.internal/ubuntu oracular/universe daligner 1.0+git20240119.335105d-2 (diff) [6212 B] 192s gpgv: Signature made Wed Mar 13 20:41:30 2024 UTC 192s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 192s gpgv: issuer "emollier@debian.org" 192s gpgv: Can't check signature: No public key 192s dpkg-source: warning: cannot verify inline signature for ./daligner_1.0+git20240119.335105d-2.dsc: no acceptable signature found 193s autopkgtest [06:59:01]: testing package daligner version 1.0+git20240119.335105d-2 195s autopkgtest [06:59:03]: build not needed 197s autopkgtest [06:59:05]: test run-unit-test: preparing testbed 207s Reading package lists... 207s Building dependency tree... 208s Reading state information... 208s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following additional packages will be installed: 209s daligner dazzdb 209s Suggested packages: 209s dascrubber 210s The following NEW packages will be installed: 210s autopkgtest-satdep daligner dazzdb 210s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 210s Need to get 457 kB/458 kB of archives. 210s After this operation, 2457 kB of additional disk space will be used. 210s Get:1 /tmp/autopkgtest.VLCrOu/1-autopkgtest-satdep.deb autopkgtest-satdep armhf 0 [708 B] 211s Get:2 http://ftpmaster.internal/ubuntu oracular/universe armhf daligner armhf 1.0+git20240119.335105d-2 [231 kB] 211s Get:3 http://ftpmaster.internal/ubuntu oracular-proposed/universe armhf dazzdb armhf 1.0+git20240115.be65e59-1 [226 kB] 212s Fetched 457 kB in 1s (441 kB/s) 212s Selecting previously unselected package daligner. 213s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58333 files and directories currently installed.) 213s Preparing to unpack .../daligner_1.0+git20240119.335105d-2_armhf.deb ... 213s Unpacking daligner (1.0+git20240119.335105d-2) ... 213s Selecting previously unselected package dazzdb. 213s Preparing to unpack .../dazzdb_1.0+git20240115.be65e59-1_armhf.deb ... 213s Unpacking dazzdb (1.0+git20240115.be65e59-1) ... 213s Selecting previously unselected package autopkgtest-satdep. 213s Preparing to unpack .../1-autopkgtest-satdep.deb ... 213s Unpacking autopkgtest-satdep (0) ... 213s Setting up dazzdb (1.0+git20240115.be65e59-1) ... 213s Setting up daligner (1.0+git20240119.335105d-2) ... 213s Setting up autopkgtest-satdep (0) ... 213s Processing triggers for man-db (2.12.1-1) ... 228s (Reading database ... 58410 files and directories currently installed.) 228s Removing autopkgtest-satdep (0) ... 233s autopkgtest [06:59:41]: test run-unit-test: [----------------------- 238s You are about to overwrite the current partition settings. This 238s will invalidate any tracks, overlaps, and other derivative files. 239s Are you sure you want to proceed? [Y/N] 239s Statistics for all reads in the data set 239s 239s 1,873 reads out of 1,873 (100.0%) 239s 20,006,850 base pairs out of 20,006,850 (100.0%) 239s 239s 10,681 average read length 239s 2,159 standard deviation 239s 239s Base composition: 0.250(A) 0.250(C) 0.250(G) 0.250(T) 239s 239s Distribution of Read Lengths (Bin size = 1,000) 239s 239s Bin: Count % Reads % Bases Average 239s 19,000: 2 0.1 0.2 19450 239s 18,000: 5 0.4 0.7 18903 239s 17,000: 9 0.9 1.4 18030 239s 16,000: 15 1.7 2.7 17344 239s 15,000: 42 3.9 5.9 16242 239s 14,000: 79 8.1 11.6 15327 239s 13,000: 110 14.0 19.0 14544 239s 12,000: 178 23.5 30.1 13700 239s 11,000: 287 38.8 46.6 12819 239s 10,000: 390 59.6 67.0 12002 239s 9,000: 350 78.3 83.7 11408 239s 8,000: 251 91.7 94.4 10990 239s 7,000: 114 97.8 98.7 10776 239s 6,000: 35 99.7 99.8 10697 239s 5,000: 6 100.0 100.0 10681 239s DBstats: Warning: -mdust option given but no track found. 239s files = 1 239s 1873 G Sim 239s blocks = 2 239s size = 11000000 cutoff = 0 all = 0 239s 0 0 239s 1025 1025 239s 1873 1873 239s # Daligner jobs (2) 239s daligner -t5 -mdust G.1 G.@1-1 242s LAmerge: Out of memory (Allocating LAmerge blocks) 242s 242s daligner2.0: Command Failed: 242s LAmerge G.1.G.1.las /tmp/daligner.897/G.1.G.1.N@.S 242s daligner -t5 -mdust G.2 G.@1-2 248s LAmerge: Out of memory (Allocating LAmerge blocks) 248s 248s daligner2.0: Command Failed: 248s LAmerge G.2.G.1.las /tmp/daligner.968/G.2.G.1.N@.S 248s # Check initial .las files jobs (2) (optional but recommended) 248s LAcheck -vS G G.1.G.@ 248s LAcheck -vS G G.2.G.@ 248s # Merge jobs (2) 248s LAmerge G.1 G.1.G.@ && LAcheck -vS G G.1 248s LAmerge: Out of memory (Allocating LAmerge blocks) 248s LAmerge G.2 G.2.G.@ && LAcheck -vS G G.2 248s LAmerge: Out of memory (Allocating LAmerge blocks) 248s # Remove block .las files (optional) 248s rm G.1.G.*.las 248s rm: cannot remove 'G.1.G.*.las': No such file or directory 248s rm G.2.G.*.las 248s rm: cannot remove 'G.2.G.*.las': No such file or directory 248s autopkgtest [06:59:56]: test run-unit-test: -----------------------] 252s autopkgtest [07:00:00]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 252s run-unit-test FAIL non-zero exit status 1 256s autopkgtest [07:00:04]: @@@@@@@@@@@@@@@@@@@@ summary 256s run-unit-test FAIL non-zero exit status 1